[1] "ofn"       "-oTLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/15115118/LGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/15716583/transformed.cor.cli.txt"

nPatients in clinical file=516, in cluster file=513, common to both=513
[1] "Reduce the number of clustering variables from 148 to 146."
[1] 146 513
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
           398            115 
  IDH1 MUTATED IDH1 WILD-TYPE 
           398            115 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           248            265 
  TP53 MUTATED TP53 WILD-TYPE 
           248            265 
[1] "ATRX MUTATION ANALYSIS"
[1] 3
  ATRX MUTATED ATRX WILD-TYPE 
           195            318 
  ATRX MUTATED ATRX WILD-TYPE 
           195            318 
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
          108           405 
  CIC MUTATED CIC WILD-TYPE 
          108           405 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              42              471 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              42              471 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            35            478 
  EGFR MUTATED EGFR WILD-TYPE 
            35            478 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              22              491 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              22              491 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            493 
  IDH2 MUTATED IDH2 WILD-TYPE 
            20            493 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           33           480 
  NF1 MUTATED NF1 WILD-TYPE 
           33           480 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            24            489 
  PTEN MUTATED PTEN WILD-TYPE 
            24            489 
[1] "FUBP1 MUTATION ANALYSIS"
[1] 3
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             466 
  FUBP1 MUTATED FUBP1 WILD-TYPE 
             47             466 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              20              493 
  ARID1A MUTATED ARID1A WILD-TYPE 
              20              493 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              44              469 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              44              469 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
             10             503 
  STK19 MUTATED STK19 WILD-TYPE 
             10             503 
[1] "NIPBL MUTATION ANALYSIS"
[1] 3
  NIPBL MUTATED NIPBL WILD-TYPE 
             18             495 
  NIPBL MUTATED NIPBL WILD-TYPE 
             18             495 
[1] "CREBZF MUTATION ANALYSIS"
[1] 3
  CREBZF MUTATED CREBZF WILD-TYPE 
               7              506 
  CREBZF MUTATED CREBZF WILD-TYPE 
               7              506 
[1] "TCF12 MUTATION ANALYSIS"
[1] 3
  TCF12 MUTATED TCF12 WILD-TYPE 
             15             498 
  TCF12 MUTATED TCF12 WILD-TYPE 
             15             498 
[1] "TRERF1 MUTATION ANALYSIS"
[1] 3
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               6              507 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               6              507 
[1] "SRPX MUTATION ANALYSIS"
[1] 3
  SRPX MUTATED SRPX WILD-TYPE 
             4            509 
  SRPX MUTATED SRPX WILD-TYPE 
             4            509 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               26               487 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               26               487 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             7            506 
  EMG1 MUTATED EMG1 WILD-TYPE 
             7            506 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
              18              495 
  FAM47C MUTATED FAM47C WILD-TYPE 
              18              495 
[1] "TNRC18 MUTATION ANALYSIS"
[1] 3
  TNRC18 MUTATED TNRC18 WILD-TYPE 
              10              503 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
              10              503 
[1] "DNMT3A MUTATION ANALYSIS"
[1] 3
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              503 
  DNMT3A MUTATED DNMT3A WILD-TYPE 
              10              503 
[1] "HTRA2 MUTATION ANALYSIS"
[1] 3
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             508 
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              5             508 
[1] "ZNF709 MUTATION ANALYSIS"
[1] 3
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               4              509 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               4              509 
[1] "RBPJ MUTATION ANALYSIS"
[1] 3
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            506 
  RBPJ MUTATED RBPJ WILD-TYPE 
             7            506 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             4            509 
  NRAS MUTATED NRAS WILD-TYPE 
             4            509 
[1] "ZNF292 MUTATION ANALYSIS"
[1] 3
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              14              499 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              14              499 
[1] "PTPN11 MUTATION ANALYSIS"
[1] 3
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               7              506 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               7              506 
[1] "GAGE2D MUTATION ANALYSIS"
[1] 3
  GAGE2D MUTATED GAGE2D WILD-TYPE 
               5              508 
  GAGE2D MUTATED GAGE2D WILD-TYPE 
               5              508 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             11             502 
  ARID2 MUTATED ARID2 WILD-TYPE 
             11             502 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              9             504 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              9             504 
[1] "PDGFRA MUTATION ANALYSIS"
[1] 3
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              10              503 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              10              503 
[1] "ZNF512B MUTATION ANALYSIS"
[1] 3
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               508 
  ZNF512B MUTATED ZNF512B WILD-TYPE 
                5               508 
[1] "PPL MUTATION ANALYSIS"
[1] 3
  PPL MUTATED PPL WILD-TYPE 
            6           507 
  PPL MUTATED PPL WILD-TYPE 
            6           507 
[1] "PRX MUTATION ANALYSIS"
[1] 3
  PRX MUTATED PRX WILD-TYPE 
           10           503 
  PRX MUTATED PRX WILD-TYPE 
           10           503 
[1] "NKD2 MUTATION ANALYSIS"
[1] 3
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            509 
  NKD2 MUTATED NKD2 WILD-TYPE 
             4            509 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
             7            506 
  IRS4 MUTATED IRS4 WILD-TYPE 
             7            506 
[1] "SPTAN1 MUTATION ANALYSIS"
[1] 3
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               5              508 
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               5              508 
[1] "CIB1 MUTATION ANALYSIS"
[1] 3
  CIB1 MUTATED CIB1 WILD-TYPE 
             4            509 
  CIB1 MUTATED CIB1 WILD-TYPE 
             4            509 
[1] "EIF1AX MUTATION ANALYSIS"
[1] 3
  EIF1AX MUTATED EIF1AX WILD-TYPE 
               4              509 
  EIF1AX MUTATED EIF1AX WILD-TYPE 
               4              509 
[1] "WRN MUTATION ANALYSIS"
[1] 3
  WRN MUTATED WRN WILD-TYPE 
            5           508 
  WRN MUTATED WRN WILD-TYPE 
            5           508 
[1] "SCN4A MUTATION ANALYSIS"
[1] 3
  SCN4A MUTATED SCN4A WILD-TYPE 
              6             507 
  SCN4A MUTATED SCN4A WILD-TYPE 
              6             507 
[1] "PLCG1 MUTATION ANALYSIS"
[1] 3
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              6             507 
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              6             507 
[1] "DLC1 MUTATION ANALYSIS"
[1] 3
  DLC1 MUTATED DLC1 WILD-TYPE 
             6            507 
  DLC1 MUTATED DLC1 WILD-TYPE 
             6            507 
[1] "TMEM216 MUTATION ANALYSIS"
[1] 3
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               510 
  TMEM216 MUTATED TMEM216 WILD-TYPE 
                3               510 
[1] "MYT1 MUTATION ANALYSIS"
[1] 3
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            507 
  MYT1 MUTATED MYT1 WILD-TYPE 
             6            507 
[1] "SMARCB1 MUTATION ANALYSIS"
[1] 3
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                4               509 
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
                4               509 
[1] "RIPK4 MUTATION ANALYSIS"
[1] 3
  RIPK4 MUTATED RIPK4 WILD-TYPE 
              8             505 
  RIPK4 MUTATED RIPK4 WILD-TYPE 
              8             505 
[1] "NEU2 MUTATION ANALYSIS"
[1] 3
  NEU2 MUTATED NEU2 WILD-TYPE 
             5            508 
  NEU2 MUTATED NEU2 WILD-TYPE 
             5            508 
[1] "PTPRH MUTATION ANALYSIS"
[1] 3
  PTPRH MUTATED PTPRH WILD-TYPE 
              8             505 
  PTPRH MUTATED PTPRH WILD-TYPE 
              8             505 
[1] "MAPK15 MUTATION ANALYSIS"
[1] 3
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               4              509 
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               4              509 
[1] "TPX2 MUTATION ANALYSIS"
[1] 3
  TPX2 MUTATED TPX2 WILD-TYPE 
             5            508 
  TPX2 MUTATED TPX2 WILD-TYPE 
             5            508 
[1] "SLC12A7 MUTATION ANALYSIS"
[1] 3
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                7               506 
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                7               506 
[1] "PLXNA3 MUTATION ANALYSIS"
[1] 3
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               9              504 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               9              504 
[1] "RET MUTATION ANALYSIS"
[1] 3
  RET MUTATED RET WILD-TYPE 
            7           506 
  RET MUTATED RET WILD-TYPE 
            7           506 
[1] "ZNF148 MUTATION ANALYSIS"
[1] 3
  ZNF148 MUTATED ZNF148 WILD-TYPE 
               4              509 
  ZNF148 MUTATED ZNF148 WILD-TYPE 
               4              509 
[1] "HDAC2 MUTATION ANALYSIS"
[1] 3
  HDAC2 MUTATED HDAC2 WILD-TYPE 
              4             509 
  HDAC2 MUTATED HDAC2 WILD-TYPE 
              4             509 
[1] "RBBP6 MUTATION ANALYSIS"
[1] 3
  RBBP6 MUTATED RBBP6 WILD-TYPE 
              6             507 
  RBBP6 MUTATED RBBP6 WILD-TYPE 
              6             507 
[1] "MED9 MUTATION ANALYSIS"
[1] 3
  MED9 MUTATED MED9 WILD-TYPE 
             3            510 
  MED9 MUTATED MED9 WILD-TYPE 
             3            510 
[1] "DDX5 MUTATION ANALYSIS"
[1] 3
  DDX5 MUTATED DDX5 WILD-TYPE 
             5            508 
  DDX5 MUTATED DDX5 WILD-TYPE 
             5            508 
[1] "ZC3H11A MUTATION ANALYSIS"
[1] 3
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                5               508 
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                5               508 
[1] "SLC6A3 MUTATION ANALYSIS"
[1] 3
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               9              504 
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               9              504 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              5             508 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              5             508 
[1] "C4BPA MUTATION ANALYSIS"
[1] 3
  C4BPA MUTATED C4BPA WILD-TYPE 
              6             507 
  C4BPA MUTATED C4BPA WILD-TYPE 
              6             507 
[1] "MATK MUTATION ANALYSIS"
[1] 3
  MATK MUTATED MATK WILD-TYPE 
             6            507 
  MATK MUTATED MATK WILD-TYPE 
             6            507 
[1] "SMOC1 MUTATION ANALYSIS"
[1] 3
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              3             510 
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              3             510 
[1] "NAP1L2 MUTATION ANALYSIS"
[1] 3
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               4              509 
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               4              509 
[1] "CD99L2 MUTATION ANALYSIS"
[1] 3
  CD99L2 MUTATED CD99L2 WILD-TYPE 
               4              509 
  CD99L2 MUTATED CD99L2 WILD-TYPE 
               4              509 
[1] "SELE MUTATION ANALYSIS"
[1] 3
  SELE MUTATED SELE WILD-TYPE 
             6            507 
  SELE MUTATED SELE WILD-TYPE 
             6            507 
[1] "TMEM184A MUTATION ANALYSIS"
[1] 3
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                510 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 3                510 
[1] "FHOD1 MUTATION ANALYSIS"
[1] 3
  FHOD1 MUTATED FHOD1 WILD-TYPE 
              6             507 
  FHOD1 MUTATED FHOD1 WILD-TYPE 
              6             507 
[1] "HTR3A MUTATION ANALYSIS"
[1] 3
  HTR3A MUTATED HTR3A WILD-TYPE 
              7             506 
  HTR3A MUTATED HTR3A WILD-TYPE 
              7             506 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            6           507 
  RB1 MUTATED RB1 WILD-TYPE 
            6           507 
[1] "FGD6 MUTATION ANALYSIS"
[1] 3
  FGD6 MUTATED FGD6 WILD-TYPE 
             4            509 
  FGD6 MUTATED FGD6 WILD-TYPE 
             4            509 
[1] "CD72 MUTATION ANALYSIS"
[1] 3
  CD72 MUTATED CD72 WILD-TYPE 
             3            510 
  CD72 MUTATED CD72 WILD-TYPE 
             3            510 
[1] "NKPD1 MUTATION ANALYSIS"
[1] 3
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              3             510 
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              3             510 
[1] "MTMR1 MUTATION ANALYSIS"
[1] 3
  MTMR1 MUTATED MTMR1 WILD-TYPE 
              4             509 
  MTMR1 MUTATED MTMR1 WILD-TYPE 
              4             509 
[1] "GPR133 MUTATION ANALYSIS"
[1] 3
  GPR133 MUTATED GPR133 WILD-TYPE 
               4              509 
  GPR133 MUTATED GPR133 WILD-TYPE 
               4              509 
[1] "CNOT4 MUTATION ANALYSIS"
[1] 3
  CNOT4 MUTATED CNOT4 WILD-TYPE 
              5             508 
  CNOT4 MUTATED CNOT4 WILD-TYPE 
              5             508 
[1] "ZBTB20 MUTATION ANALYSIS"
[1] 3
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              21              492 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              21              492 
[1] "ROBO3 MUTATION ANALYSIS"
[1] 3
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             508 
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              5             508 
[1] "PDE8A MUTATION ANALYSIS"
[1] 3
  PDE8A MUTATED PDE8A WILD-TYPE 
              6             507 
  PDE8A MUTATED PDE8A WILD-TYPE 
              6             507 
[1] "EEF1D MUTATION ANALYSIS"
[1] 3
  EEF1D MUTATED EEF1D WILD-TYPE 
              3             510 
  EEF1D MUTATED EEF1D WILD-TYPE 
              3             510 
[1] "MET MUTATION ANALYSIS"
[1] 3
  MET MUTATED MET WILD-TYPE 
            7           506 
  MET MUTATED MET WILD-TYPE 
            7           506 
[1] "CUL4B MUTATION ANALYSIS"
[1] 3
  CUL4B MUTATED CUL4B WILD-TYPE 
             10             503 
  CUL4B MUTATED CUL4B WILD-TYPE 
             10             503 
[1] "SNX31 MUTATION ANALYSIS"
[1] 3
  SNX31 MUTATED SNX31 WILD-TYPE 
              4             509 
  SNX31 MUTATED SNX31 WILD-TYPE 
              4             509 
[1] "PHF3 MUTATION ANALYSIS"
[1] 3
  PHF3 MUTATED PHF3 WILD-TYPE 
             8            505 
  PHF3 MUTATED PHF3 WILD-TYPE 
             8            505 
[1] "G6PC MUTATION ANALYSIS"
[1] 3
  G6PC MUTATED G6PC WILD-TYPE 
             6            507 
  G6PC MUTATED G6PC WILD-TYPE 
             6            507 
[1] "FOXQ1 MUTATION ANALYSIS"
[1] 3
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              4             509 
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              4             509 
[1] "AEBP1 MUTATION ANALYSIS"
[1] 3
  AEBP1 MUTATED AEBP1 WILD-TYPE 
              4             509 
  AEBP1 MUTATED AEBP1 WILD-TYPE 
              4             509 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             10             503 
  SETD2 MUTATED SETD2 WILD-TYPE 
             10             503 
[1] "DST MUTATION ANALYSIS"
[1] 3
  DST MUTATED DST WILD-TYPE 
           12           501 
  DST MUTATED DST WILD-TYPE 
           12           501 
[1] "USP6 MUTATION ANALYSIS"
[1] 3
  USP6 MUTATED USP6 WILD-TYPE 
             6            507 
  USP6 MUTATED USP6 WILD-TYPE 
             6            507 
[1] "TPM1 MUTATION ANALYSIS"
[1] 3
  TPM1 MUTATED TPM1 WILD-TYPE 
             5            508 
  TPM1 MUTATED TPM1 WILD-TYPE 
             5            508 
[1] "GLYAT MUTATION ANALYSIS"
[1] 3
  GLYAT MUTATED GLYAT WILD-TYPE 
              4             509 
  GLYAT MUTATED GLYAT WILD-TYPE 
              4             509 
[1] "DIAPH1 MUTATION ANALYSIS"
[1] 3
  DIAPH1 MUTATED DIAPH1 WILD-TYPE 
               4              509 
  DIAPH1 MUTATED DIAPH1 WILD-TYPE 
               4              509 
[1] "ZMYM2 MUTATION ANALYSIS"
[1] 3
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              7             506 
  ZMYM2 MUTATED ZMYM2 WILD-TYPE 
              7             506 
[1] "HCFC1 MUTATION ANALYSIS"
[1] 3
  HCFC1 MUTATED HCFC1 WILD-TYPE 
              7             506 
  HCFC1 MUTATED HCFC1 WILD-TYPE 
              7             506 
[1] "MST1 MUTATION ANALYSIS"
[1] 3
  MST1 MUTATED MST1 WILD-TYPE 
             4            509 
  MST1 MUTATED MST1 WILD-TYPE 
             4            509 
[1] "TNFSF14 MUTATION ANALYSIS"
[1] 3
  TNFSF14 MUTATED TNFSF14 WILD-TYPE 
                5               508 
  TNFSF14 MUTATED TNFSF14 WILD-TYPE 
                5               508 
[1] "DNAH7 MUTATION ANALYSIS"
[1] 3
  DNAH7 MUTATED DNAH7 WILD-TYPE 
             10             503 
  DNAH7 MUTATED DNAH7 WILD-TYPE 
             10             503 
[1] "ENGASE MUTATION ANALYSIS"
[1] 3
  ENGASE MUTATED ENGASE WILD-TYPE 
               5              508 
  ENGASE MUTATED ENGASE WILD-TYPE 
               5              508 
[1] "MYH8 MUTATION ANALYSIS"
[1] 3
  MYH8 MUTATED MYH8 WILD-TYPE 
            14            499 
  MYH8 MUTATED MYH8 WILD-TYPE 
            14            499 
[1] "VSIG4 MUTATION ANALYSIS"
[1] 3
  VSIG4 MUTATED VSIG4 WILD-TYPE 
              6             507 
  VSIG4 MUTATED VSIG4 WILD-TYPE 
              6             507 
[1] "KRT3 MUTATION ANALYSIS"
[1] 3
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            509 
  KRT3 MUTATED KRT3 WILD-TYPE 
             4            509 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
              4             509 
  STAG2 MUTATED STAG2 WILD-TYPE 
              4             509 
[1] "MUC17 MUTATION ANALYSIS"
[1] 3
  MUC17 MUTATED MUC17 WILD-TYPE 
             27             486 
  MUC17 MUTATED MUC17 WILD-TYPE 
             27             486 
[1] "ABCA7 MUTATION ANALYSIS"
[1] 3
  ABCA7 MUTATED ABCA7 WILD-TYPE 
              9             504 
  ABCA7 MUTATED ABCA7 WILD-TYPE 
              9             504 
[1] "FOXK1 MUTATION ANALYSIS"
[1] 3
  FOXK1 MUTATED FOXK1 WILD-TYPE 
              4             509 
  FOXK1 MUTATED FOXK1 WILD-TYPE 
              4             509 
[1] "SLFN11 MUTATION ANALYSIS"
[1] 3
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               4              509 
  SLFN11 MUTATED SLFN11 WILD-TYPE 
               4              509 
[1] "MX2 MUTATION ANALYSIS"
[1] 3
  MX2 MUTATED MX2 WILD-TYPE 
            4           509 
  MX2 MUTATED MX2 WILD-TYPE 
            4           509 
[1] "SLC6A4 MUTATION ANALYSIS"
[1] 3
  SLC6A4 MUTATED SLC6A4 WILD-TYPE 
               5              508 
  SLC6A4 MUTATED SLC6A4 WILD-TYPE 
               5              508 
[1] "KRT15 MUTATION ANALYSIS"
[1] 3
  KRT15 MUTATED KRT15 WILD-TYPE 
              6             507 
  KRT15 MUTATED KRT15 WILD-TYPE 
              6             507 
[1] "F8 MUTATION ANALYSIS"
[1] 3
  F8 MUTATED F8 WILD-TYPE 
           9          504 
  F8 MUTATED F8 WILD-TYPE 
           9          504 
[1] "HOOK1 MUTATION ANALYSIS"
[1] 3
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              3             510 
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              3             510 
[1] "FMR1 MUTATION ANALYSIS"
[1] 3
  FMR1 MUTATED FMR1 WILD-TYPE 
             5            508 
  FMR1 MUTATED FMR1 WILD-TYPE 
             5            508 
[1] "SON MUTATION ANALYSIS"
[1] 3
  SON MUTATED SON WILD-TYPE 
            8           505 
  SON MUTATED SON WILD-TYPE 
            8           505 
[1] "TTC30B MUTATION ANALYSIS"
[1] 3
  TTC30B MUTATED TTC30B WILD-TYPE 
               6              507 
  TTC30B MUTATED TTC30B WILD-TYPE 
               6              507 
[1] "FANCD2 MUTATION ANALYSIS"
[1] 3
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              506 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              506 
[1] "RGL2 MUTATION ANALYSIS"
[1] 3
  RGL2 MUTATED RGL2 WILD-TYPE 
             4            509 
  RGL2 MUTATED RGL2 WILD-TYPE 
             4            509 
[1] "NR1H3 MUTATION ANALYSIS"
[1] 3
  NR1H3 MUTATED NR1H3 WILD-TYPE 
              4             509 
  NR1H3 MUTATED NR1H3 WILD-TYPE 
              4             509 
[1] "TYRP1 MUTATION ANALYSIS"
[1] 3
  TYRP1 MUTATED TYRP1 WILD-TYPE 
              4             509 
  TYRP1 MUTATED TYRP1 WILD-TYPE 
              4             509 
[1] "SLC25A5 MUTATION ANALYSIS"
[1] 3
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                4               509 
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                4               509 
[1] "AGBL1 MUTATION ANALYSIS"
[1] 3
  AGBL1 MUTATED AGBL1 WILD-TYPE 
              5             508 
  AGBL1 MUTATED AGBL1 WILD-TYPE 
              5             508 
[1] "AMPD1 MUTATION ANALYSIS"
[1] 3
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              4             509 
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              4             509 
[1] "NGEF MUTATION ANALYSIS"
[1] 3
  NGEF MUTATED NGEF WILD-TYPE 
             6            507 
  NGEF MUTATED NGEF WILD-TYPE 
             6            507 
[1] "YIPF1 MUTATION ANALYSIS"
[1] 3
  YIPF1 MUTATED YIPF1 WILD-TYPE 
              3             510 
  YIPF1 MUTATED YIPF1 WILD-TYPE 
              3             510 
[1] "PDHA1 MUTATION ANALYSIS"
[1] 3
  PDHA1 MUTATED PDHA1 WILD-TYPE 
              5             508 
  PDHA1 MUTATED PDHA1 WILD-TYPE 
              5             508 
[1] "ASXL2 MUTATION ANALYSIS"
[1] 3
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              3             510 
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              3             510 
[1] "HLA-DRA MUTATION ANALYSIS"
[1] 3
  HLA-DRA MUTATED HLA-DRA WILD-TYPE 
                3               510 
  HLA-DRA MUTATED HLA-DRA WILD-TYPE 
                3               510 
[1] "ALPP MUTATION ANALYSIS"
[1] 3
  ALPP MUTATED ALPP WILD-TYPE 
             5            508 
  ALPP MUTATED ALPP WILD-TYPE 
             5            508 
[1] "CDH3 MUTATION ANALYSIS"
[1] 3
  CDH3 MUTATED CDH3 WILD-TYPE 
             3            510 
  CDH3 MUTATED CDH3 WILD-TYPE 
             3            510 
[1] "NADSYN1 MUTATION ANALYSIS"
[1] 3
  NADSYN1 MUTATED NADSYN1 WILD-TYPE 
                3               510 
  NADSYN1 MUTATED NADSYN1 WILD-TYPE 
                3               510 
[1] "LHFPL1 MUTATION ANALYSIS"
[1] 3
  LHFPL1 MUTATED LHFPL1 WILD-TYPE 
               4              509 
  LHFPL1 MUTATED LHFPL1 WILD-TYPE 
               4              509 
[1] "SLC10A7 MUTATION ANALYSIS"
[1] 3
  SLC10A7 MUTATED SLC10A7 WILD-TYPE 
                3               510 
  SLC10A7 MUTATED SLC10A7 WILD-TYPE 
                3               510 
[1] "CXCR2 MUTATION ANALYSIS"
[1] 3
  CXCR2 MUTATED CXCR2 WILD-TYPE 
              4             509 
  CXCR2 MUTATED CXCR2 WILD-TYPE 
              4             509 
[1] "SEC14L4 MUTATION ANALYSIS"
[1] 3
  SEC14L4 MUTATED SEC14L4 WILD-TYPE 
                3               510 
  SEC14L4 MUTATED SEC14L4 WILD-TYPE 
                3               510 
[1] "ANKRD17 MUTATION ANALYSIS"
[1] 3
  ANKRD17 MUTATED ANKRD17 WILD-TYPE 
                6               507 
  ANKRD17 MUTATED ANKRD17 WILD-TYPE 
                6               507 
[1] "MAST3 MUTATION ANALYSIS"
[1] 3
  MAST3 MUTATED MAST3 WILD-TYPE 
              5             508 
  MAST3 MUTATED MAST3 WILD-TYPE 
              5             508 
[1] "AMMECR1 MUTATION ANALYSIS"
[1] 3
  AMMECR1 MUTATED AMMECR1 WILD-TYPE 
                5               508 
  AMMECR1 MUTATED AMMECR1 WILD-TYPE 
                5               508 
[1] "NEO1 MUTATION ANALYSIS"
[1] 3
  NEO1 MUTATED NEO1 WILD-TYPE 
             7            506 
  NEO1 MUTATED NEO1 WILD-TYPE 
             7            506 
[1] "IGSF8 MUTATION ANALYSIS"
[1] 3
  IGSF8 MUTATED IGSF8 WILD-TYPE 
              4             509 
  IGSF8 MUTATED IGSF8 WILD-TYPE 
              4             509 
[1] "PACS1 MUTATION ANALYSIS"
[1] 3
  PACS1 MUTATED PACS1 WILD-TYPE 
              3             510 
  PACS1 MUTATED PACS1 WILD-TYPE 
              3             510 
[1] "RGS3 MUTATION ANALYSIS"
[1] 3
  RGS3 MUTATED RGS3 WILD-TYPE 
             6            507 
  RGS3 MUTATED RGS3 WILD-TYPE 
             6            507 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 513 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 513 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = IDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        9      7      7
  IDH1 WILD-TYPE      0      3      1
D1V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            9              0
  CLUS_2            7              3
  CLUS_3            7              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        6      6      5      6
  IDH1 WILD-TYPE      1      1      2      0
D1V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            6              1
  CLUS_2            6              1
  CLUS_3            5              2
  CLUS_4            6              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED      158     45    193
  IDH1 WILD-TYPE     11     75     28
D1V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          158             11
  CLUS_2           45             75
  CLUS_3          193             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED      218      6    155     19
  IDH1 WILD-TYPE      4     75     13     23
D1V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          218              4
  CLUS_2            6             75
  CLUS_3          155             13
  CLUS_4           19             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       42     31     63     58
  IDH1 WILD-TYPE     10     31      5     16
D1V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           42             10
  CLUS_2           31             31
  CLUS_3           63              5
  CLUS_4           58             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED       61     91     42
  IDH1 WILD-TYPE      6     40     16
D1V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           61              6
  CLUS_2           91             40
  CLUS_3           42             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH1 MUTATED      130     34    101    109     24
  IDH1 WILD-TYPE      2     75      8     24      6
D1V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          130              2
  CLUS_2           34             75
  CLUS_3          101              8
  CLUS_4          109             24
  CLUS_5           24              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDH1 MUTATED      132      2     32     50     84     37     61
  IDH1 WILD-TYPE      2     69      4     16      7      4     13
D1V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          132              2
  CLUS_2            2             69
  CLUS_3           32              4
  CLUS_4           50             16
  CLUS_5           84              7
  CLUS_6           37              4
  CLUS_7           61             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       97     73    146     78
  IDH1 WILD-TYPE     39     34     37      5
D1V9, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           97             39
  CLUS_2           73             34
  CLUS_3          146             37
  CLUS_4           78              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED      207    152     35
  IDH1 WILD-TYPE     15     32     68
D1V10, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          207             15
  CLUS_2          152             32
  CLUS_3           35             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED      114    153    124
  IDH1 WILD-TYPE     70      9     35
D1V11, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1          114             70
  CLUS_2          153              9
  CLUS_3          124             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       84    129    161     17
  IDH1 WILD-TYPE      6      9     27     72
D1V12, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           84              6
  CLUS_2          129              9
  CLUS_3          161             27
  CLUS_4           17             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        8      4      4
  TP53 WILD-TYPE      1      6      4
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            8              1
  CLUS_2            4              6
  CLUS_3            4              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        5      7      1      3
  TP53 WILD-TYPE      2      0      6      3
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            5              2
  CLUS_2            7              0
  CLUS_3            1              6
  CLUS_4            3              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      156     47     45
  TP53 WILD-TYPE     13     73    176
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          156             13
  CLUS_2           47             73
  CLUS_3           45            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      213     15      7     13
  TP53 WILD-TYPE      9     66    161     29
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          213              9
  CLUS_2           15             66
  CLUS_3            7            161
  CLUS_4           13             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       33     30     41     30
  TP53 WILD-TYPE     19     32     27     44
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           33             19
  CLUS_2           30             32
  CLUS_3           41             27
  CLUS_4           30             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       37     70     27
  TP53 WILD-TYPE     30     61     31
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           37             30
  CLUS_2           70             61
  CLUS_3           27             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED      129     40      7     58     14
  TP53 WILD-TYPE      3     69    102     75     16
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          129              3
  CLUS_2           40             69
  CLUS_3            7            102
  CLUS_4           58             75
  CLUS_5           14             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED      129      8      1     48      4     38     20
  TP53 WILD-TYPE      5     63     35     18     87      3     54
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          129              5
  CLUS_2            8             63
  CLUS_3            1             35
  CLUS_4           48             18
  CLUS_5            4             87
  CLUS_6           38              3
  CLUS_7           20             54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       82     70     74     18
  TP53 WILD-TYPE     54     37    109     65
D2V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           82             54
  CLUS_2           70             37
  CLUS_3           74            109
  CLUS_4           18             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      133     71     40
  TP53 WILD-TYPE     89    113     63
D2V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          133             89
  CLUS_2           71            113
  CLUS_3           40             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       98     79     64
  TP53 WILD-TYPE     86     83     95
D2V11, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           98             86
  CLUS_2           79             83
  CLUS_3           64             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       79     56     85     21
  TP53 WILD-TYPE     11     82    103     68
D2V12, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           79             11
  CLUS_2           56             82
  CLUS_3           85            103
  CLUS_4           21             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = ATRX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED        8      3      3
  ATRX WILD-TYPE      1      7      5
D3V1, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            8              1
  CLUS_2            3              7
  CLUS_3            3              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        5      5      1      3
  ATRX WILD-TYPE      2      2      6      3
D3V2, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            5              2
  CLUS_2            5              2
  CLUS_3            1              6
  CLUS_4            3              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED      129     34     32
  ATRX WILD-TYPE     40     86    189
D3V3, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          129             40
  CLUS_2           34             86
  CLUS_3           32            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED      171      8      3     13
  ATRX WILD-TYPE     51     73    165     29
D3V4, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          171             51
  CLUS_2            8             73
  CLUS_3            3            165
  CLUS_4           13             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       27     23     34     27
  ATRX WILD-TYPE     25     39     34     47
D3V5, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           27             25
  CLUS_2           23             39
  CLUS_3           34             34
  CLUS_4           27             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED       31     55     25
  ATRX WILD-TYPE     36     76     33
D3V6, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           31             36
  CLUS_2           55             76
  CLUS_3           25             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRX MUTATED      107     27      2     48     11
  ATRX WILD-TYPE     25     82    107     85     19
D3V7, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          107             25
  CLUS_2           27             82
  CLUS_3            2            107
  CLUS_4           48             85
  CLUS_5           11             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATRX MUTATED      108      4      1     38      1     26     17
  ATRX WILD-TYPE     26     67     35     28     90     15     57
D3V8, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          108             26
  CLUS_2            4             67
  CLUS_3            1             35
  CLUS_4           38             28
  CLUS_5            1             90
  CLUS_6           26             15
  CLUS_7           17             57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       60     60     59     12
  ATRX WILD-TYPE     76     47    124     71
D3V9, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           60             76
  CLUS_2           60             47
  CLUS_3           59            124
  CLUS_4           12             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED      108     58     25
  ATRX WILD-TYPE    114    126     78
D3V10, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1          108            114
  CLUS_2           58            126
  CLUS_3           25             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED       76     60     52
  ATRX WILD-TYPE    108    102    107
D3V11, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           76            108
  CLUS_2           60            102
  CLUS_3           52            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       62     43     69     14
  ATRX WILD-TYPE     28     95    119     75
D3V12, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           62             28
  CLUS_2           43             95
  CLUS_3           69            119
  CLUS_4           14             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = CIC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        0      5      2
  CIC WILD-TYPE      9      5      6
D4V1, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0             9
  CLUS_2           5             5
  CLUS_3           2             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        0      0      5      2
  CIC WILD-TYPE      7      7      2      4
D4V2, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             7
  CLUS_3           5             2
  CLUS_4           2             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        1      5    102
  CIC WILD-TYPE    168    115    119
D4V3, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           1           168
  CLUS_2           5           115
  CLUS_3         102           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        0      1    104      3
  CIC WILD-TYPE    222     80     64     39
D4V4, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           222
  CLUS_2           1            80
  CLUS_3         104            64
  CLUS_4           3            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        2      6     22     15
  CIC WILD-TYPE     50     56     46     59
D4V5, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           2            50
  CLUS_2           6            56
  CLUS_3          22            46
  CLUS_4          15            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       10     25     10
  CIC WILD-TYPE     57    106     48
D4V6, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          10            57
  CLUS_2          25           106
  CLUS_3          10            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        0      1     74     28      5
  CIC WILD-TYPE    132    108     35    105     25
D4V7, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           132
  CLUS_2           1           108
  CLUS_3          74            35
  CLUS_4          28           105
  CLUS_5           5            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIC MUTATED        0      0     23      0     60      1     24
  CIC WILD-TYPE    134     71     13     66     31     40     50
D4V8, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0           134
  CLUS_2           0            71
  CLUS_3          23            13
  CLUS_4           0            66
  CLUS_5          60            31
  CLUS_6           1            40
  CLUS_7          24            50
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED       15      4     43     46
  CIC WILD-TYPE    121    103    140     37
D4V9, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          15           121
  CLUS_2           4           103
  CLUS_3          43           140
  CLUS_4          46            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       55     51      2
  CIC WILD-TYPE    167    133    101
D4V10, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          55           167
  CLUS_2          51           133
  CLUS_3           2           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       11     61     36
  CIC WILD-TYPE    173    101    123
D4V11, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          11           173
  CLUS_2          61           101
  CLUS_3          36           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        2     62     43      1
  CIC WILD-TYPE     88     76    145     88
D4V12, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           2            88
  CLUS_2          62            76
  CLUS_3          43           145
  CLUS_4           1            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = NOTCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        0      2      1
  NOTCH1 WILD-TYPE      9      8      7
D5V1, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2                8
  CLUS_3              1                7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        0      0      2      1
  NOTCH1 WILD-TYPE      7      7      5      5
D5V2, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                7
  CLUS_3              2                5
  CLUS_4              1                5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        6      5     31
  NOTCH1 WILD-TYPE    163    115    190
D5V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              6              163
  CLUS_2              5              115
  CLUS_3             31              190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        9      1     32      0
  NOTCH1 WILD-TYPE    213     80    136     42
D5V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              9              213
  CLUS_2              1               80
  CLUS_3             32              136
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        4      6      9      9
  NOTCH1 WILD-TYPE     48     56     59     65
D5V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              6               56
  CLUS_3              9               59
  CLUS_4              9               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        6     15      7
  NOTCH1 WILD-TYPE     61    116     51
D5V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              6               61
  CLUS_2             15              116
  CLUS_3              7               51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH1 MUTATED        3      3     21     15      0
  NOTCH1 WILD-TYPE    129    106     88    118     30
D5V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3              129
  CLUS_2              3              106
  CLUS_3             21               88
  CLUS_4             15              118
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH1 MUTATED        3      0     13      1      9      3     13
  NOTCH1 WILD-TYPE    131     71     23     65     82     38     61
D5V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              0               71
  CLUS_3             13               23
  CLUS_4              1               65
  CLUS_5              9               82
  CLUS_6              3               38
  CLUS_7             13               61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        4      3     21     13
  NOTCH1 WILD-TYPE    132    104    162     70
D5V9, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              4              132
  CLUS_2              3              104
  CLUS_3             21              162
  CLUS_4             13               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED       16     23      2
  NOTCH1 WILD-TYPE    206    161    101
D5V10, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             16              206
  CLUS_2             23              161
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        6     13     22
  NOTCH1 WILD-TYPE    178    149    137
D5V11, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              6              178
  CLUS_2             13              149
  CLUS_3             22              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        3     14     24      0
  NOTCH1 WILD-TYPE     87    124    164     89
D5V12, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3               87
  CLUS_2             14              124
  CLUS_3             24              164
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = EGFR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0      0      0
  EGFR WILD-TYPE      9     10      8
D6V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0      0      0      0
  EGFR WILD-TYPE      7      7      7      6
D6V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0     32      3
  EGFR WILD-TYPE    169     88    218
D6V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            169
  CLUS_2           32             88
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0     30      2      3
  EGFR WILD-TYPE    222     51    166     39
D6V4, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            222
  CLUS_2           30             51
  CLUS_3            2            166
  CLUS_4            3             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        1      9      2      4
  EGFR WILD-TYPE     51     53     66     70
D6V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            1             51
  CLUS_2            9             53
  CLUS_3            2             66
  CLUS_4            4             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        0     12      4
  EGFR WILD-TYPE     67    119     54
D6V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0             67
  CLUS_2           12            119
  CLUS_3            4             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGFR MUTATED        0     26      2      5      2
  EGFR WILD-TYPE    132     83    107    128     28
D6V7, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            132
  CLUS_2           26             83
  CLUS_3            2            107
  CLUS_4            5            128
  CLUS_5            2             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EGFR MUTATED        0     25      1      6      0      1      2
  EGFR WILD-TYPE    134     46     35     60     91     40     72
D6V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0            134
  CLUS_2           25             46
  CLUS_3            1             35
  CLUS_4            6             60
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            2             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       11     11     13      0
  EGFR WILD-TYPE    125     96    170     83
D6V9, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           11            125
  CLUS_2           11             96
  CLUS_3           13            170
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        1      9     25
  EGFR WILD-TYPE    221    175     78
D6V10, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            1            221
  CLUS_2            9            175
  CLUS_3           25             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       23      0     12
  EGFR WILD-TYPE    161    162    147
D6V11, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           23            161
  CLUS_2            0            162
  CLUS_3           12            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        0      0      8     27
  EGFR WILD-TYPE     90    138    180     62
D6V12, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            0             90
  CLUS_2            0            138
  CLUS_3            8            180
  CLUS_4           27             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = PIK3R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        2      1      0
  PIK3R1 WILD-TYPE      7      9      8
D7V1, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2                7
  CLUS_2              1                9
  CLUS_3              0                8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        2      0      1      0
  PIK3R1 WILD-TYPE      5      7      6      6
D7V2, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              0                7
  CLUS_3              1                6
  CLUS_4              0                6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        2      5     15
  PIK3R1 WILD-TYPE    167    115    206
D7V3, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              5              115
  CLUS_3             15              206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        3      5     14      0
  PIK3R1 WILD-TYPE    219     76    154     42
D7V4, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              5               76
  CLUS_3             14              154
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        3      2      5      4
  PIK3R1 WILD-TYPE     49     60     63     70
D7V5, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               60
  CLUS_3              5               63
  CLUS_4              4               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        3      8      3
  PIK3R1 WILD-TYPE     64    123     55
D7V6, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              8              123
  CLUS_3              3               55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R1 MUTATED        2      6      8      4      2
  PIK3R1 WILD-TYPE    130    103    101    129     28
D7V7, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              6              103
  CLUS_3              8              101
  CLUS_4              4              129
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3R1 MUTATED        3      2      1      0      9      3      4
  PIK3R1 WILD-TYPE    131     69     35     66     82     38     70
D7V8, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              2               69
  CLUS_3              1               35
  CLUS_4              0               66
  CLUS_5              9               82
  CLUS_6              3               38
  CLUS_7              4               70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        6      3      5      8
  PIK3R1 WILD-TYPE    130    104    178     75
D7V9, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              6              130
  CLUS_2              3              104
  CLUS_3              5              178
  CLUS_4              8               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED       12      7      3
  PIK3R1 WILD-TYPE    210    177    100
D7V10, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             12              210
  CLUS_2              7              177
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        9      7      6
  PIK3R1 WILD-TYPE    175    155    153
D7V11, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              9              175
  CLUS_2              7              155
  CLUS_3              6              153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        3      8      9      2
  PIK3R1 WILD-TYPE     87    130    179     87
D7V12, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               87
  CLUS_2              8              130
  CLUS_3              9              179
  CLUS_4              2               87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = IDH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        0      2      0
  IDH2 WILD-TYPE      9      8      8
D8V1, multiclass
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5322 
"IDH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        0      0      2      0
  IDH2 WILD-TYPE      7      7      5      6
D8V2, multiclass
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-E1-5322 
"IDH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        1      3     16
  IDH2 WILD-TYPE    168    117    205
D8V3, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            168
  CLUS_2            3            117
  CLUS_3           16            205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        3      0     13      4
  IDH2 WILD-TYPE    219     81    155     38
D8V4, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            0             81
  CLUS_3           13            155
  CLUS_4            4             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        1      4      2      5
  IDH2 WILD-TYPE     51     58     66     69
D8V5, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            4             58
  CLUS_3            2             66
  CLUS_4            5             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        1      6      5
  IDH2 WILD-TYPE     66    125     53
D8V6, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            6            125
  CLUS_3            5             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        1      1      8      9      1
  IDH2 WILD-TYPE    131    108    101    124     29
D8V7, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            1            108
  CLUS_3            8            101
  CLUS_4            9            124
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDH2 MUTATED        1      0      4      1      6      0      8
  IDH2 WILD-TYPE    133     71     32     65     85     41     66
D8V8, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            0             71
  CLUS_3            4             32
  CLUS_4            1             65
  CLUS_5            6             85
  CLUS_6            0             41
  CLUS_7            8             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        3      0     12      5
  IDH2 WILD-TYPE    133    107    171     78
D8V9, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            133
  CLUS_2            0            107
  CLUS_3           12            171
  CLUS_4            5             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        5     15      0
  IDH2 WILD-TYPE    217    169    103
D8V10, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            5            217
  CLUS_2           15            169
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        1      8     11
  IDH2 WILD-TYPE    183    154    148
D8V11, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            8            154
  CLUS_3           11            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        2      6     12      0
  IDH2 WILD-TYPE     88    132    176     89
D8V12, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            2             88
  CLUS_2            6            132
  CLUS_3           12            176
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = NF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        0      1      0
  NF1 WILD-TYPE      9      9      8
D9V1, multiclass
[1] "Remove cluster labels:" "NF1 MUTATED"           
clus
  NF1 MUTATED NF1 WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5322 
"NF1 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        0      1      0      0
  NF1 WILD-TYPE      7      6      7      6
D9V2, multiclass
[1] "Remove cluster labels:" "NF1 MUTATED"           
clus
  NF1 MUTATED NF1 WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-E1-5322 
"NF1 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        6     17     10
  NF1 WILD-TYPE    163    103    211
D9V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           6           163
  CLUS_2          17           103
  CLUS_3          10           211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1     19      8      5
  NF1 WILD-TYPE    221     62    160     37
D9V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           221
  CLUS_2          19            62
  CLUS_3           8           160
  CLUS_4           5            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1      9      3      4
  NF1 WILD-TYPE     51     53     65     70
D9V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            51
  CLUS_2           9            53
  CLUS_3           3            65
  CLUS_4           4            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        4     12      1
  NF1 WILD-TYPE     63    119     57
D9V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           4            63
  CLUS_2          12           119
  CLUS_3           1            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        1     20      6      4      2
  NF1 WILD-TYPE    131     89    103    129     28
D9V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           131
  CLUS_2          20            89
  CLUS_3           6           103
  CLUS_4           4           129
  CLUS_5           2            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NF1 MUTATED        1     16      1      3      6      4      2
  NF1 WILD-TYPE    133     55     35     63     85     37     72
D9V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1           133
  CLUS_2          16            55
  CLUS_3           1            35
  CLUS_4           3            63
  CLUS_5           6            85
  CLUS_6           4            37
  CLUS_7           2            72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        9     11      9      4
  NF1 WILD-TYPE    127     96    174     79
D9V9, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           9           127
  CLUS_2          11            96
  CLUS_3           9           174
  CLUS_4           4            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       10      6     17
  NF1 WILD-TYPE    212    178     86
D9V10, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          10           212
  CLUS_2           6           178
  CLUS_3          17            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       21      6      6
  NF1 WILD-TYPE    163    156    153
D9V11, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          21           163
  CLUS_2           6           156
  CLUS_3           6           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1      6      7     19
  NF1 WILD-TYPE     89    132    181     70
D9V12, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            89
  CLUS_2           6           132
  CLUS_3           7           181
  CLUS_4          19            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      0      1
  PTEN WILD-TYPE      9     10      7
D10V1, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      0      0      0
  PTEN WILD-TYPE      6      7      7      6
D10V2, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        3     20      1
  PTEN WILD-TYPE    166    100    220
D10V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            166
  CLUS_2           20            100
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        3     18      1      2
  PTEN WILD-TYPE    219     63    167     40
D10V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            219
  CLUS_2           18             63
  CLUS_3            1            167
  CLUS_4            2             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      8      1      0
  PTEN WILD-TYPE     51     54     67     74
D10V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             51
  CLUS_2            8             54
  CLUS_3            1             67
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0     10      0
  PTEN WILD-TYPE     67    121     58
D10V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             67
  CLUS_2           10            121
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        3     19      1      0      1
  PTEN WILD-TYPE    129     90    108    133     29
D10V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            129
  CLUS_2           19             90
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTEN MUTATED        2     18      0      1      1      2      0
  PTEN WILD-TYPE    132     53     36     65     90     39     74
D10V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            132
  CLUS_2           18             53
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       12      8      3      1
  PTEN WILD-TYPE    124     99    180     82
D10V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           12            124
  CLUS_2            8             99
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        6      1     17
  PTEN WILD-TYPE    216    183     86
D10V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6            216
  CLUS_2            1            183
  CLUS_3           17             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       20      2      2
  PTEN WILD-TYPE    164    160    157
D10V11, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           20            164
  CLUS_2            2            160
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        3      3      1     17
  PTEN WILD-TYPE     87    135    187     72
D10V12, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             87
  CLUS_2            3            135
  CLUS_3            1            187
  CLUS_4           17             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = FUBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        0      4      0
  FUBP1 WILD-TYPE      9      6      8
D11V1, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             4               6
  CLUS_3             0               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        0      0      4      0
  FUBP1 WILD-TYPE      7      7      3      6
D11V2, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               7
  CLUS_3             4               3
  CLUS_4             0               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        0      1     46
  FUBP1 WILD-TYPE    169    119    175
D11V3, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3            46             175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        0      1     46      0
  FUBP1 WILD-TYPE    222     80    122     42
D11V4, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             1              80
  CLUS_3            46             122
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        1      2     10      9
  FUBP1 WILD-TYPE     51     60     58     65
D11V5, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              60
  CLUS_3            10              58
  CLUS_4             9              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        7     11      4
  FUBP1 WILD-TYPE     60    120     54
D11V6, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             7              60
  CLUS_2            11             120
  CLUS_3             4              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUBP1 MUTATED        0      1     32     11      3
  FUBP1 WILD-TYPE    132    108     77    122     27
D11V7, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3            32              77
  CLUS_4            11             122
  CLUS_5             3              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FUBP1 MUTATED        0      0     12      0     22      1     12
  FUBP1 WILD-TYPE    134     71     24     66     69     40     62
D11V8, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3            12              24
  CLUS_4             0              66
  CLUS_5            22              69
  CLUS_6             1              40
  CLUS_7            12              62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        6      1     22     18
  FUBP1 WILD-TYPE    130    106    161     65
D11V9, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             6             130
  CLUS_2             1             106
  CLUS_3            22             161
  CLUS_4            18              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED       24     22      1
  FUBP1 WILD-TYPE    198    162    102
D11V10, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1            24             198
  CLUS_2            22             162
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP1 MUTATED        8     22     17
  FUBP1 WILD-TYPE    176    140    142
D11V11, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             8             176
  CLUS_2            22             140
  CLUS_3            17             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP1 MUTATED        0     23     24      0
  FUBP1 WILD-TYPE     90    115    164     89
D11V12, multiclass
        clus
vv       FUBP1 MUTATED FUBP1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2            23             115
  CLUS_3            24             164
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        0      1      0
  ARID1A WILD-TYPE      9      9      8
D12V1, multiclass
[1] "Remove cluster labels:" "ARID1A MUTATED"        
clus
  ARID1A MUTATED ARID1A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5276       TCGA-DB-5277 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        0      1      0      0
  ARID1A WILD-TYPE      7      6      7      6
D12V2, multiclass
[1] "Remove cluster labels:" "ARID1A MUTATED"        
clus
  ARID1A MUTATED ARID1A WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5276       TCGA-DB-5277 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        6      3     10
  ARID1A WILD-TYPE    163    117    211
D12V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6              163
  CLUS_2              3              117
  CLUS_3             10              211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        6      2     12      0
  ARID1A WILD-TYPE    216     79    156     42
D12V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6              216
  CLUS_2              2               79
  CLUS_3             12              156
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        2      1      6      4
  ARID1A WILD-TYPE     50     61     62     70
D12V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               50
  CLUS_2              1               61
  CLUS_3              6               62
  CLUS_4              4               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        2      8      3
  ARID1A WILD-TYPE     65    123     55
D12V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               65
  CLUS_2              8              123
  CLUS_3              3               55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        4      1     10      5      0
  ARID1A WILD-TYPE    128    108     99    128     30
D12V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4              128
  CLUS_2              1              108
  CLUS_3             10               99
  CLUS_4              5              128
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        4      0      3      2      7      1      3
  ARID1A WILD-TYPE    130     71     33     64     84     40     71
D12V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4              130
  CLUS_2              0               71
  CLUS_3              3               33
  CLUS_4              2               64
  CLUS_5              7               84
  CLUS_6              1               40
  CLUS_7              3               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        5      2      7      6
  ARID1A WILD-TYPE    131    105    176     77
D12V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              5              131
  CLUS_2              2              105
  CLUS_3              7              176
  CLUS_4              6               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       10      8      2
  ARID1A WILD-TYPE    212    176    101
D12V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             10              212
  CLUS_2              8              176
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        3     10      7
  ARID1A WILD-TYPE    181    152    152
D12V11, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3              181
  CLUS_2             10              152
  CLUS_3              7              152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        1     11      7      1
  ARID1A WILD-TYPE     89    127    181     88
D12V12, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              1               89
  CLUS_2             11              127
  CLUS_3              7              181
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        0      0      0
  PIK3CA WILD-TYPE      9     10      8
D13V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      0      0      0
  PIK3CA WILD-TYPE      7      7      7      6
D13V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        3     13     28
  PIK3CA WILD-TYPE    166    107    193
D13V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3              166
  CLUS_2             13              107
  CLUS_3             28              193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        5     11     25      3
  PIK3CA WILD-TYPE    217     70    143     39
D13V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5              217
  CLUS_2             11               70
  CLUS_3             25              143
  CLUS_4              3               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        3      7      5      8
  PIK3CA WILD-TYPE     49     55     63     66
D13V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3               49
  CLUS_2              7               55
  CLUS_3              5               63
  CLUS_4              8               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        7     11      5
  PIK3CA WILD-TYPE     60    120     53
D13V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              7               60
  CLUS_2             11              120
  CLUS_3              5               53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        2     14     15     10      3
  PIK3CA WILD-TYPE    130     95     94    123     27
D13V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2              130
  CLUS_2             14               95
  CLUS_3             15               94
  CLUS_4             10              123
  CLUS_5              3               27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED        1     11      2      2     15      4      9
  PIK3CA WILD-TYPE    133     60     34     64     76     37     65
D13V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              133
  CLUS_2             11               60
  CLUS_3              2               34
  CLUS_4              2               64
  CLUS_5             15               76
  CLUS_6              4               37
  CLUS_7              9               65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        5     14     13     12
  PIK3CA WILD-TYPE    131     93    170     71
D13V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5              131
  CLUS_2             14               93
  CLUS_3             13              170
  CLUS_4             12               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       13     16     15
  PIK3CA WILD-TYPE    209    168     88
D13V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             13              209
  CLUS_2             16              168
  CLUS_3             15               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       17     10     17
  PIK3CA WILD-TYPE    167    152    142
D13V11, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             17              167
  CLUS_2             10              152
  CLUS_3             17              142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0     15     17     12
  PIK3CA WILD-TYPE     90    123    171     77
D13V12, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               90
  CLUS_2             15              123
  CLUS_3             17              171
  CLUS_4             12               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = STK19 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        0      0      0
  STK19 WILD-TYPE      9     10      8
D14V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        0      0      0      0
  STK19 WILD-TYPE      7      7      7      6
D14V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        3      4      3
  STK19 WILD-TYPE    166    116    218
D14V3, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3             166
  CLUS_2             4             116
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        4      3      1      2
  STK19 WILD-TYPE    218     78    167     40
D14V4, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             4             218
  CLUS_2             3              78
  CLUS_3             1             167
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        4      0      1      2
  STK19 WILD-TYPE     48     62     67     72
D14V5, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             0              62
  CLUS_3             1              67
  CLUS_4             2              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        3      2      2
  STK19 WILD-TYPE     64    129     56
D14V6, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2             129
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK19 MUTATED        2      3      0      4      1
  STK19 WILD-TYPE    130    106    109    129     29
D14V7, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             3             106
  CLUS_3             0             109
  CLUS_4             4             129
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK19 MUTATED        2      2      0      3      1      1      1
  STK19 WILD-TYPE    132     69     36     63     90     40     73
D14V8, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             3              63
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        1      4      5      0
  STK19 WILD-TYPE    135    103    178     83
D14V9, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             4             103
  CLUS_3             5             178
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        3      4      3
  STK19 WILD-TYPE    219    180    100
D14V10, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             4             180
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK19 MUTATED        3      4      3
  STK19 WILD-TYPE    181    158    156
D14V11, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             3             181
  CLUS_2             4             158
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK19 MUTATED        1      2      5      2
  STK19 WILD-TYPE     89    136    183     87
D14V12, multiclass
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             5             183
  CLUS_4             2              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = NIPBL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        0      1      0
  NIPBL WILD-TYPE      9      9      8
D15V1, multiclass
[1] "Remove cluster labels:" "NIPBL MUTATED"         
clus
  NIPBL MUTATED NIPBL WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        0      0      1      0
  NIPBL WILD-TYPE      7      7      6      6
D15V2, multiclass
[1] "Remove cluster labels:" "NIPBL MUTATED"         
clus
  NIPBL MUTATED NIPBL WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"NIPBL WILD-TYPE" "NIPBL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        2      3     13
  NIPBL WILD-TYPE    167    117    208
D15V3, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             167
  CLUS_2             3             117
  CLUS_3            13             208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        2      2     14      0
  NIPBL WILD-TYPE    220     79    154     42
D15V4, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3            14             154
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        0      1      3      1
  NIPBL WILD-TYPE     52     61     65     73
D15V5, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             3              65
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        1      4      0
  NIPBL WILD-TYPE     66    127     58
D15V6, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             1              66
  CLUS_2             4             127
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIPBL MUTATED        1      3     10      2      2
  NIPBL WILD-TYPE    131    106     99    131     28
D15V7, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             1             131
  CLUS_2             3             106
  CLUS_3            10              99
  CLUS_4             2             131
  CLUS_5             2              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIPBL MUTATED        2      1      2      0     10      1      2
  NIPBL WILD-TYPE    132     70     34     66     81     40     72
D15V8, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2             132
  CLUS_2             1              70
  CLUS_3             2              34
  CLUS_4             0              66
  CLUS_5            10              81
  CLUS_6             1              40
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        5      4      4      5
  NIPBL WILD-TYPE    131    103    179     78
D15V9, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             5             131
  CLUS_2             4             103
  CLUS_3             4             179
  CLUS_4             5              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED       12      4      2
  NIPBL WILD-TYPE    210    180    101
D15V10, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            12             210
  CLUS_2             4             180
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        3     12      3
  NIPBL WILD-TYPE    181    150    156
D15V11, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3             181
  CLUS_2            12             150
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        3     10      4      1
  NIPBL WILD-TYPE     87    128    184     88
D15V12, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3              87
  CLUS_2            10             128
  CLUS_3             4             184
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = CREBZF MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      0      0
  CREBZF WILD-TYPE      9     10      8
D16V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      0      0      0
  CREBZF WILD-TYPE      7      7      7      6
D16V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      1      6
  CREBZF WILD-TYPE    169    119    215
D16V3, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              169
  CLUS_2              1              119
  CLUS_3              6              215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      0      6      1
  CREBZF WILD-TYPE    222     81    162     41
D16V4, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              222
  CLUS_2              0               81
  CLUS_3              6              162
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      1      0      4
  CREBZF WILD-TYPE     52     61     68     70
D16V5, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0               52
  CLUS_2              1               61
  CLUS_3              0               68
  CLUS_4              4               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        1      0      4
  CREBZF WILD-TYPE     66    131     54
D16V6, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              1               66
  CLUS_2              0              131
  CLUS_3              4               54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBZF MUTATED        0      1      2      4      0
  CREBZF WILD-TYPE    132    108    107    129     30
D16V7, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              132
  CLUS_2              1              108
  CLUS_3              2              107
  CLUS_4              4              129
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CREBZF MUTATED        0      1      2      1      0      0      3
  CREBZF WILD-TYPE    134     70     34     65     91     41     71
D16V8, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              134
  CLUS_2              1               70
  CLUS_3              2               34
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              3               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      1      5      1
  CREBZF WILD-TYPE    136    106    178     82
D16V9, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              136
  CLUS_2              1              106
  CLUS_3              5              178
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        0      6      1
  CREBZF WILD-TYPE    222    178    102
D16V10, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0              222
  CLUS_2              6              178
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBZF MUTATED        1      1      5
  CREBZF WILD-TYPE    183    161    154
D16V11, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              1              183
  CLUS_2              1              161
  CLUS_3              5              154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBZF MUTATED        0      0      6      1
  CREBZF WILD-TYPE     90    138    182     88
D16V12, multiclass
        clus
vv       CREBZF MUTATED CREBZF WILD-TYPE
  CLUS_1              0               90
  CLUS_2              0              138
  CLUS_3              6              182
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = TCF12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        0      0      1
  TCF12 WILD-TYPE      9     10      7
D17V1, multiclass
[1] "Remove cluster labels:" "TCF12 MUTATED"         
clus
  TCF12 MUTATED TCF12 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5273 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        0      0      0      1
  TCF12 WILD-TYPE      7      7      7      5
D17V2, multiclass
[1] "Remove cluster labels:" "TCF12 MUTATED"         
clus
  TCF12 MUTATED TCF12 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5273 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"TCF12 WILD-TYPE" "TCF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        5      2      8
  TCF12 WILD-TYPE    164    118    213
D17V3, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             5             164
  CLUS_2             2             118
  CLUS_3             8             213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        6      1      6      2
  TCF12 WILD-TYPE    216     80    162     40
D17V4, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             6             216
  CLUS_2             1              80
  CLUS_3             6             162
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        1      1      5      2
  TCF12 WILD-TYPE     51     61     63     72
D17V5, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             1              61
  CLUS_3             5              63
  CLUS_4             2              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        1      6      2
  TCF12 WILD-TYPE     66    125     56
D17V6, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             6             125
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF12 MUTATED        4      3      5      3      0
  TCF12 WILD-TYPE    128    106    104    130     30
D17V7, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4             128
  CLUS_2             3             106
  CLUS_3             5             104
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCF12 MUTATED        4      1      3      2      2      2      1
  TCF12 WILD-TYPE    130     70     33     64     89     39     73
D17V8, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4             130
  CLUS_2             1              70
  CLUS_3             3              33
  CLUS_4             2              64
  CLUS_5             2              89
  CLUS_6             2              39
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        4      2      5      4
  TCF12 WILD-TYPE    132    105    178     79
D17V9, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4             132
  CLUS_2             2             105
  CLUS_3             5             178
  CLUS_4             4              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        8      6      1
  TCF12 WILD-TYPE    214    178    102
D17V10, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             8             214
  CLUS_2             6             178
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF12 MUTATED        5      5      5
  TCF12 WILD-TYPE    179    157    154
D17V11, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             5             179
  CLUS_2             5             157
  CLUS_3             5             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF12 MUTATED        4      3      7      1
  TCF12 WILD-TYPE     86    135    181     88
D17V12, multiclass
        clus
vv       TCF12 MUTATED TCF12 WILD-TYPE
  CLUS_1             4              86
  CLUS_2             3             135
  CLUS_3             7             181
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = TRERF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        0      0      0
  TRERF1 WILD-TYPE      9     10      8
D18V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        0      0      0      0
  TRERF1 WILD-TYPE      7      7      7      6
D18V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        4      1      1
  TRERF1 WILD-TYPE    165    119    220
D18V3, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              4              165
  CLUS_2              1              119
  CLUS_3              1              220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        3      2      0      1
  TRERF1 WILD-TYPE    219     79    168     41
D18V4, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              2               79
  CLUS_3              0              168
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        1      0      1      2
  TRERF1 WILD-TYPE     51     62     67     72
D18V5, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              0               62
  CLUS_3              1               67
  CLUS_4              2               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        1      1      2
  TRERF1 WILD-TYPE     66    130     56
D18V6, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              1              130
  CLUS_3              2               56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRERF1 MUTATED        2      2      0      1      1
  TRERF1 WILD-TYPE    130    107    109    132     29
D18V7, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              2              107
  CLUS_3              0              109
  CLUS_4              1              132
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRERF1 MUTATED        3      1      0      1      0      1      0
  TRERF1 WILD-TYPE    131     70     36     65     91     40     74
D18V8, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              1               70
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        1      3      2      0
  TRERF1 WILD-TYPE    135    104    181     83
D18V9, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              3              104
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        2      2      2
  TRERF1 WILD-TYPE    220    182    101
D18V10, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              2              182
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRERF1 MUTATED        2      0      4
  TRERF1 WILD-TYPE    182    162    155
D18V11, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              0              162
  CLUS_3              4              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRERF1 MUTATED        1      0      4      1
  TRERF1 WILD-TYPE     89    138    184     88
D18V12, multiclass
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              0              138
  CLUS_3              4              184
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = SRPX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        0      1      0
  SRPX WILD-TYPE      9      9      8
D19V1, multiclass
[1] "Remove cluster labels:" "SRPX MUTATED"          
clus
  SRPX MUTATED SRPX WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      0      1      0
  SRPX WILD-TYPE      7      7      6      6
D19V2, multiclass
[1] "Remove cluster labels:" "SRPX MUTATED"          
clus
  SRPX MUTATED SRPX WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        0      2      2
  SRPX WILD-TYPE    169    118    219
D19V3, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            169
  CLUS_2            2            118
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      2      2      0
  SRPX WILD-TYPE    222     79    166     42
D19V4, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            222
  CLUS_2            2             79
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      1      2      0
  SRPX WILD-TYPE     52     61     66     74
D19V5, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0             52
  CLUS_2            1             61
  CLUS_3            2             66
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        1      2      0
  SRPX WILD-TYPE     66    129     58
D19V6, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             66
  CLUS_2            2            129
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        0      2      2      0      0
  SRPX WILD-TYPE    132    107    107    133     30
D19V7, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            132
  CLUS_2            2            107
  CLUS_3            2            107
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRPX MUTATED        0      2      1      0      1      0      0
  SRPX WILD-TYPE    134     69     35     66     90     41     74
D19V8, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0            134
  CLUS_2            2             69
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        2      1      0      1
  SRPX WILD-TYPE    134    106    183     82
D19V9, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            134
  CLUS_2            1            106
  CLUS_3            0            183
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        2      0      2
  SRPX WILD-TYPE    220    184    101
D19V10, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            220
  CLUS_2            0            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        3      1      0
  SRPX WILD-TYPE    181    161    159
D19V11, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            3            181
  CLUS_2            1            161
  CLUS_3            0            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      2      0      2
  SRPX WILD-TYPE     90    136    188     87
D19V12, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0             90
  CLUS_2            2            136
  CLUS_3            0            188
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = SMARCA4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        0      0      0
  SMARCA4 WILD-TYPE      9     10      8
D20V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        0      0      0      0
  SMARCA4 WILD-TYPE      7      7      7      6
D20V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       16      4      6
  SMARCA4 WILD-TYPE    153    116    215
D20V3, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              16               153
  CLUS_2               4               116
  CLUS_3               6               215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED       17      2      7      0
  SMARCA4 WILD-TYPE    205     79    161     42
D20V4, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              17               205
  CLUS_2               2                79
  CLUS_3               7               161
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        0      3      5      4
  SMARCA4 WILD-TYPE     52     59     63     70
D20V5, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               3                59
  CLUS_3               5                63
  CLUS_4               4                70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        2      7      3
  SMARCA4 WILD-TYPE     65    124     55
D20V6, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               2                65
  CLUS_2               7               124
  CLUS_3               3                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCA4 MUTATED        9      2      7      6      2
  SMARCA4 WILD-TYPE    123    107    102    127     28
D20V7, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               9               123
  CLUS_2               2               107
  CLUS_3               7               102
  CLUS_4               6               127
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCA4 MUTATED       11      1      2      4      4      2      2
  SMARCA4 WILD-TYPE    123     70     34     62     87     39     72
D20V8, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              11               123
  CLUS_2               1                70
  CLUS_3               2                34
  CLUS_4               4                62
  CLUS_5               4                87
  CLUS_6               2                39
  CLUS_7               2                72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        8      2      9      6
  SMARCA4 WILD-TYPE    128    105    174     77
D20V9, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               8               128
  CLUS_2               2               105
  CLUS_3               9               174
  CLUS_4               6                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       14      9      2
  SMARCA4 WILD-TYPE    208    175    101
D20V10, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              14               208
  CLUS_2               9               175
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        8      9      8
  SMARCA4 WILD-TYPE    176    153    151
D20V11, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               8               176
  CLUS_2               9               153
  CLUS_3               8               151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        7      6     11      1
  SMARCA4 WILD-TYPE     83    132    177     88
D20V12, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               7                83
  CLUS_2               6               132
  CLUS_3              11               177
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      0      0
  EMG1 WILD-TYPE      9     10      8
D21V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      0      0      0
  EMG1 WILD-TYPE      7      7      7      6
D21V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      1      4
  EMG1 WILD-TYPE    167    119    217
D21V3, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            4            217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        3      0      4      0
  EMG1 WILD-TYPE    219     81    164     42
D21V4, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            0             81
  CLUS_3            4            164
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        2      0      1      0
  EMG1 WILD-TYPE     50     62     67     74
D21V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            0             62
  CLUS_3            1             67
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        1      2      0
  EMG1 WILD-TYPE     66    129     58
D21V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            2            129
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        1      0      3      2      1
  EMG1 WILD-TYPE    131    109    106    131     29
D21V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            0            109
  CLUS_3            3            106
  CLUS_4            2            131
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        1      0      0      2      4      0      0
  EMG1 WILD-TYPE    133     71     36     64     87     41     74
D21V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            2             64
  CLUS_5            4             87
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      0      3      3
  EMG1 WILD-TYPE    135    107    180     80
D21V9, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            0            107
  CLUS_3            3            180
  CLUS_4            3             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        5      2      0
  EMG1 WILD-TYPE    217    182    103
D21V10, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            5            217
  CLUS_2            2            182
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        2      3      2
  EMG1 WILD-TYPE    182    159    157
D21V11, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            182
  CLUS_2            3            159
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      4      2      0
  EMG1 WILD-TYPE     89    134    186     89
D21V12, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            4            134
  CLUS_3            2            186
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = FAM47C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        0      0      0
  FAM47C WILD-TYPE      9     10      8
D22V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        0      0      0      0
  FAM47C WILD-TYPE      7      7      7      6
D22V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        3      5     10
  FAM47C WILD-TYPE    166    115    211
D22V3, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              166
  CLUS_2              5              115
  CLUS_3             10              211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        7      2      7      2
  FAM47C WILD-TYPE    215     79    161     40
D22V4, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              7              215
  CLUS_2              2               79
  CLUS_3              7              161
  CLUS_4              2               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        1      1      2      5
  FAM47C WILD-TYPE     51     61     66     69
D22V5, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1               51
  CLUS_2              1               61
  CLUS_3              2               66
  CLUS_4              5               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        1      4      4
  FAM47C WILD-TYPE     66    127     54
D22V6, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1               66
  CLUS_2              4              127
  CLUS_3              4               54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        2      3      5      8      0
  FAM47C WILD-TYPE    130    106    104    125     30
D22V7, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2              130
  CLUS_2              3              106
  CLUS_3              5              104
  CLUS_4              8              125
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM47C MUTATED        0      2      0      5      5      1      5
  FAM47C WILD-TYPE    134     69     36     61     86     40     69
D22V8, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              0              134
  CLUS_2              2               69
  CLUS_3              0               36
  CLUS_4              5               61
  CLUS_5              5               86
  CLUS_6              1               40
  CLUS_7              5               69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        3      4      9      2
  FAM47C WILD-TYPE    133    103    174     81
D22V9, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              133
  CLUS_2              4              103
  CLUS_3              9              174
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        5     11      2
  FAM47C WILD-TYPE    217    173    101
D22V10, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              5              217
  CLUS_2             11              173
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        3      3     12
  FAM47C WILD-TYPE    181    159    147
D22V11, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              3              181
  CLUS_2              3              159
  CLUS_3             12              147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        0      3     14      1
  FAM47C WILD-TYPE     90    135    174     88
D22V12, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              0               90
  CLUS_2              3              135
  CLUS_3             14              174
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = TNRC18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        0      0      0
  TNRC18 WILD-TYPE      9     10      8
D23V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      0      0      0
  TNRC18 WILD-TYPE      7      7      7      6
D23V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      3      5
  TNRC18 WILD-TYPE    167    117    216
D23V3, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              3              117
  CLUS_3              5              216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        4      4      1      1
  TNRC18 WILD-TYPE    218     77    167     41
D23V4, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              4              218
  CLUS_2              4               77
  CLUS_3              1              167
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      1      2      1
  TNRC18 WILD-TYPE     52     61     66     73
D23V5, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              1               61
  CLUS_3              2               66
  CLUS_4              1               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        0      3      1
  TNRC18 WILD-TYPE     67    128     57
D23V6, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              3              128
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC18 MUTATED        1      4      0      4      1
  TNRC18 WILD-TYPE    131    105    109    129     29
D23V7, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              4              105
  CLUS_3              0              109
  CLUS_4              4              129
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNRC18 MUTATED        2      3      0      2      0      1      2
  TNRC18 WILD-TYPE    132     68     36     64     91     40     72
D23V8, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              3               68
  CLUS_3              0               36
  CLUS_4              2               64
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              2               72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        4      2      4      0
  TNRC18 WILD-TYPE    132    105    179     83
D23V9, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              4              132
  CLUS_2              2              105
  CLUS_3              4              179
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      4      4
  TNRC18 WILD-TYPE    220    180     99
D23V10, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              4              180
  CLUS_3              4               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        3      3      3
  TNRC18 WILD-TYPE    181    159    156
D23V11, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              3              181
  CLUS_2              3              159
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      2      4      3
  TNRC18 WILD-TYPE     90    136    184     86
D23V12, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              2              136
  CLUS_3              4              184
  CLUS_4              3               86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DNMT3A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        0      0      0
  DNMT3A WILD-TYPE      9     10      8
D24V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        0      0      0      0
  DNMT3A WILD-TYPE      7      7      7      6
D24V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        4      3      3
  DNMT3A WILD-TYPE    165    117    218
D24V3, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              165
  CLUS_2              3              117
  CLUS_3              3              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        4      3      3      0
  DNMT3A WILD-TYPE    218     78    165     42
D24V4, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              218
  CLUS_2              3               78
  CLUS_3              3              165
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        1      0      2      2
  DNMT3A WILD-TYPE     51     62     66     72
D24V5, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1               51
  CLUS_2              0               62
  CLUS_3              2               66
  CLUS_4              2               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        2      2      1
  DNMT3A WILD-TYPE     65    129     57
D24V6, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              2               65
  CLUS_2              2              129
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNMT3A MUTATED        4      2      3      1      0
  DNMT3A WILD-TYPE    128    107    106    132     30
D24V7, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              4              128
  CLUS_2              2              107
  CLUS_3              3              106
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNMT3A MUTATED        3      1      1      2      1      1      1
  DNMT3A WILD-TYPE    131     70     35     64     90     40     73
D24V8, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              3              131
  CLUS_2              1               70
  CLUS_3              1               35
  CLUS_4              2               64
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        1      2      6      1
  DNMT3A WILD-TYPE    135    105    177     82
D24V9, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1              135
  CLUS_2              2              105
  CLUS_3              6              177
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        1      5      4
  DNMT3A WILD-TYPE    221    179     99
D24V10, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1              221
  CLUS_2              5              179
  CLUS_3              4               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNMT3A MUTATED        3      4      3
  DNMT3A WILD-TYPE    181    158    156
D24V11, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              3              181
  CLUS_2              4              158
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT3A MUTATED        1      3      4      2
  DNMT3A WILD-TYPE     89    135    184     87
D24V12, multiclass
        clus
vv       DNMT3A MUTATED DNMT3A WILD-TYPE
  CLUS_1              1               89
  CLUS_2              3              135
  CLUS_3              4              184
  CLUS_4              2               87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = HTRA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        0      0      0
  HTRA2 WILD-TYPE      9     10      8
D25V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        0      0      0      0
  HTRA2 WILD-TYPE      7      7      7      6
D25V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        4      1      0
  HTRA2 WILD-TYPE    165    119    221
D25V3, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             4             165
  CLUS_2             1             119
  CLUS_3             0             221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        3      0      1      1
  HTRA2 WILD-TYPE    219     81    167     41
D25V4, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0              81
  CLUS_3             1             167
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        2      1      0      1
  HTRA2 WILD-TYPE     50     61     68     73
D25V5, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              61
  CLUS_3             0              68
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        1      2      1
  HTRA2 WILD-TYPE     66    129     57
D25V6, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTRA2 MUTATED        2      1      1      1      0
  HTRA2 WILD-TYPE    130    108    108    132     30
D25V7, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTRA2 MUTATED        2      1      1      0      0      0      1
  HTRA2 WILD-TYPE    132     70     35     66     91     41     73
D25V8, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             1              70
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        3      0      1      1
  HTRA2 WILD-TYPE    133    107    182     82
D25V9, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             133
  CLUS_2             0             107
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        3      2      0
  HTRA2 WILD-TYPE    219    182    103
D25V10, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             2             182
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        2      2      0
  HTRA2 WILD-TYPE    182    160    159
D25V11, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             2             160
  CLUS_3             0             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        2      1      1      0
  HTRA2 WILD-TYPE     88    137    187     89
D25V12, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             2              88
  CLUS_2             1             137
  CLUS_3             1             187
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = ZNF709 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        0      0      0
  ZNF709 WILD-TYPE      9     10      8
D26V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        0      0      0      0
  ZNF709 WILD-TYPE      7      7      7      6
D26V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        2      0      2
  ZNF709 WILD-TYPE    167    120    219
D26V3, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              0              120
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        2      0      2      0
  ZNF709 WILD-TYPE    220     81    166     42
D26V4, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              0               81
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      1      1      1
  ZNF709 WILD-TYPE     51     61     67     73
D26V5, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              1               61
  CLUS_3              1               67
  CLUS_4              1               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        1      2      1
  ZNF709 WILD-TYPE     66    129     57
D26V6, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              2              129
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        1      0      0      2      1
  ZNF709 WILD-TYPE    131    109    109    131     29
D26V7, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              0              109
  CLUS_3              0              109
  CLUS_4              2              131
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF709 MUTATED        0      0      0      0      2      1      1
  ZNF709 WILD-TYPE    134     71     36     66     89     40     73
D26V8, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0              134
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              2               89
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      1      2      0
  ZNF709 WILD-TYPE    135    106    181     83
D26V9, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1              106
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        1      2      1
  ZNF709 WILD-TYPE    221    182    102
D26V10, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              2              182
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        3      0      1
  ZNF709 WILD-TYPE    181    162    158
D26V11, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              3              181
  CLUS_2              0              162
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      1      2      0
  ZNF709 WILD-TYPE     89    137    186     89
D26V12, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              1              137
  CLUS_3              2              186
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = RBPJ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      0      0
  RBPJ WILD-TYPE      9     10      8
D27V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      0      0      0
  RBPJ WILD-TYPE      7      7      7      6
D27V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        2      2      3
  RBPJ WILD-TYPE    167    118    218
D27V3, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            2            167
  CLUS_2            2            118
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        1      1      5      0
  RBPJ WILD-TYPE    221     80    163     42
D27V4, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            1            221
  CLUS_2            1             80
  CLUS_3            5            163
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      2      2      0
  RBPJ WILD-TYPE     52     60     66     74
D27V5, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             60
  CLUS_3            2             66
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      4      0
  RBPJ WILD-TYPE     67    127     58
D27V6, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             67
  CLUS_2            4            127
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBPJ MUTATED        0      2      3      2      0
  RBPJ WILD-TYPE    132    107    106    131     30
D27V7, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            132
  CLUS_2            2            107
  CLUS_3            3            106
  CLUS_4            2            131
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBPJ MUTATED        0      0      4      0      1      2      0
  RBPJ WILD-TYPE    134     71     32     66     90     39     74
D27V8, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            4             32
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      2      4      1
  RBPJ WILD-TYPE    136    105    179     82
D27V9, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            4            179
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        0      5      2
  RBPJ WILD-TYPE    222    179    101
D27V10, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0            222
  CLUS_2            5            179
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        1      1      5
  RBPJ WILD-TYPE    183    161    154
D27V11, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            5            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        0      1      4      2
  RBPJ WILD-TYPE     90    137    184     87
D27V12, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            4            184
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        0      1      0
  NRAS WILD-TYPE      9      9      8
D28V1, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5394 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      0      1      0
  NRAS WILD-TYPE      7      7      6      6
D28V2, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5394 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1      0      3
  NRAS WILD-TYPE    168    120    218
D28V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            168
  CLUS_2            0            120
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        1      0      3      0
  NRAS WILD-TYPE    221     81    165     42
D28V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            221
  CLUS_2            0             81
  CLUS_3            3            165
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      0      0      1
  NRAS WILD-TYPE     52     62     68     73
D28V5, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             1            255 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396     TCGA-CS-5397 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665     TCGA-CS-6666 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140     TCGA-DH-5141 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DU-5847 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1      0      0
  NRAS WILD-TYPE     66    131     58
D28V6, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             1            255 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396     TCGA-CS-5397 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665     TCGA-CS-6666 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140     TCGA-DH-5141 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DU-5847 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        0      0      2      2      0
  NRAS WILD-TYPE    132    109    107    131     30
D28V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            132
  CLUS_2            0            109
  CLUS_3            2            107
  CLUS_4            2            131
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAS MUTATED        0      0      1      1      0      1      1
  NRAS WILD-TYPE    134     71     35     65     91     40     73
D28V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      0      3      1
  NRAS WILD-TYPE    136    107    180     82
D28V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            136
  CLUS_2            0            107
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1      2      1
  NRAS WILD-TYPE    221    182    102
D28V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            221
  CLUS_2            2            182
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        0      2      2
  NRAS WILD-TYPE    184    160    157
D28V11, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            184
  CLUS_2            2            160
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      2      2      0
  NRAS WILD-TYPE     90    136    186     89
D28V12, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             90
  CLUS_2            2            136
  CLUS_3            2            186
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = ZNF292 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        1      0      0
  ZNF292 WILD-TYPE      8     10      8
D29V1, multiclass
[1] "Remove cluster labels:" "ZNF292 MUTATED"        
clus
  ZNF292 MUTATED ZNF292 WILD-TYPE 
               1               26 
      TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390       TCGA-CS-5394 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        1      0      0      0
  ZNF292 WILD-TYPE      6      7      7      6
D29V2, multiclass
[1] "Remove cluster labels:" "ZNF292 MUTATED"        
clus
  ZNF292 MUTATED ZNF292 WILD-TYPE 
               1               26 
      TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390       TCGA-CS-5394 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        2      2     10
  ZNF292 WILD-TYPE    167    118    211
D29V3, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              2              118
  CLUS_3             10              211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        3      2      8      1
  ZNF292 WILD-TYPE    219     79    160     41
D29V4, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              2               79
  CLUS_3              8              160
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        1      0      3      4
  ZNF292 WILD-TYPE     51     62     65     70
D29V5, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              0               62
  CLUS_3              3               65
  CLUS_4              4               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        1      4      3
  ZNF292 WILD-TYPE     66    127     55
D29V6, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              4              127
  CLUS_3              3               55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED        3      2      5      4      0
  ZNF292 WILD-TYPE    129    107    104    129     30
D29V7, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3              129
  CLUS_2              2              107
  CLUS_3              5              104
  CLUS_4              4              129
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF292 MUTATED        3      0      3      0      2      2      4
  ZNF292 WILD-TYPE    131     71     33     66     89     39     70
D29V8, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              0               71
  CLUS_3              3               33
  CLUS_4              0               66
  CLUS_5              2               89
  CLUS_6              2               39
  CLUS_7              4               70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        2      3      8      1
  ZNF292 WILD-TYPE    134    104    175     82
D29V9, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2              134
  CLUS_2              3              104
  CLUS_3              8              175
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        4      8      2
  ZNF292 WILD-TYPE    218    176    101
D29V10, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              4              218
  CLUS_2              8              176
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        2      4      8
  ZNF292 WILD-TYPE    182    158    151
D29V11, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              4              158
  CLUS_3              8              151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        0      3     10      1
  ZNF292 WILD-TYPE     90    135    178     88
D29V12, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              3              135
  CLUS_3             10              178
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = PTPN11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        0      0      1
  PTPN11 WILD-TYPE      9     10      7
D30V1, multiclass
[1] "Remove cluster labels:" "PTPN11 MUTATED"        
clus
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      0      0      0
  PTPN11 WILD-TYPE      6      7      7      6
D30V2, multiclass
[1] "Remove cluster labels:" "PTPN11 MUTATED"        
clus
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5396       TCGA-DB-5270       TCGA-DB-5273 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PTPN11 WILD-TYPE" "PTPN11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        2      3      2
  PTPN11 WILD-TYPE    167    117    219
D30V3, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              3              117
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      4      1      1
  PTPN11 WILD-TYPE    221     77    167     41
D30V4, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              4               77
  CLUS_3              1              167
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      2      1      0
  PTPN11 WILD-TYPE     51     60     67     74
D30V5, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               60
  CLUS_3              1               67
  CLUS_4              0               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        2      2      0
  PTPN11 WILD-TYPE     65    129     58
D30V6, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              2              129
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN11 MUTATED        1      5      0      1      0
  PTPN11 WILD-TYPE    131    104    109    132     30
D30V7, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              5              104
  CLUS_3              0              109
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN11 MUTATED        1      3      0      2      0      0      1
  PTPN11 WILD-TYPE    133     68     36     64     91     41     73
D30V8, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              3               68
  CLUS_3              0               36
  CLUS_4              2               64
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        3      3      1      0
  PTPN11 WILD-TYPE    133    104    182     83
D30V9, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              3              104
  CLUS_3              1              182
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        1      1      5
  PTPN11 WILD-TYPE    221    183     98
D30V10, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              1              183
  CLUS_3              5               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        6      0      1
  PTPN11 WILD-TYPE    178    162    158
D30V11, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              6              178
  CLUS_2              0              162
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      0      1      5
  PTPN11 WILD-TYPE     89    138    187     84
D30V12, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              0              138
  CLUS_3              1              187
  CLUS_4              5               84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = GAGE2D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        1      0      0
  GAGE2D WILD-TYPE      8     10      8
D31V1, multiclass
[1] "Remove cluster labels:" "GAGE2D MUTATED"        
clus
  GAGE2D MUTATED GAGE2D WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-DH-5144       TCGA-E1-5302       TCGA-E1-5304       TCGA-E1-5311 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2D MUTATED        1      0      0      0
  GAGE2D WILD-TYPE      6      7      7      6
D31V2, multiclass
[1] "Remove cluster labels:" "GAGE2D MUTATED"        
clus
  GAGE2D MUTATED GAGE2D WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-DH-5144       TCGA-E1-5302       TCGA-E1-5304       TCGA-E1-5311 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"GAGE2D WILD-TYPE" "GAGE2D WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        2      1      2
  GAGE2D WILD-TYPE    167    119    219
D31V3, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              2              167
  CLUS_2              1              119
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2D MUTATED        2      1      2      0
  GAGE2D WILD-TYPE    220     80    166     42
D31V4, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1               80
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2D MUTATED        0      0      2      2
  GAGE2D WILD-TYPE     52     62     66     72
D31V5, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              0               52
  CLUS_2              0               62
  CLUS_3              2               66
  CLUS_4              2               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        1      2      1
  GAGE2D WILD-TYPE     66    129     57
D31V6, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              1               66
  CLUS_2              2              129
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2D MUTATED        1      1      1      1      1
  GAGE2D WILD-TYPE    131    108    108    132     29
D31V7, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              1              131
  CLUS_2              1              108
  CLUS_3              1              108
  CLUS_4              1              132
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAGE2D MUTATED        2      1      0      0      0      0      2
  GAGE2D WILD-TYPE    132     70     36     66     91     41     72
D31V8, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              2              132
  CLUS_2              1               70
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              2               72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2D MUTATED        1      2      2      0
  GAGE2D WILD-TYPE    135    105    181     83
D31V9, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              1              135
  CLUS_2              2              105
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        2      2      1
  GAGE2D WILD-TYPE    220    182    102
D31V10, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              2              220
  CLUS_2              2              182
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2D MUTATED        1      2      2
  GAGE2D WILD-TYPE    183    160    157
D31V11, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              1              183
  CLUS_2              2              160
  CLUS_3              2              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2D MUTATED        2      0      2      1
  GAGE2D WILD-TYPE     88    138    186     88
D31V12, multiclass
        clus
vv       GAGE2D MUTATED GAGE2D WILD-TYPE
  CLUS_1              2               88
  CLUS_2              0              138
  CLUS_3              2              186
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = ARID2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        1      0      0
  ARID2 WILD-TYPE      8     10      8
D32V1, multiclass
[1] "Remove cluster labels:" "ARID2 MUTATED"         
clus
  ARID2 MUTATED ARID2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5144      TCGA-E1-5302      TCGA-E1-5304      TCGA-E1-5311 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        1      0      0      0
  ARID2 WILD-TYPE      6      7      7      6
D32V2, multiclass
[1] "Remove cluster labels:" "ARID2 MUTATED"         
clus
  ARID2 MUTATED ARID2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-DH-5144      TCGA-E1-5302      TCGA-E1-5304      TCGA-E1-5311 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        4      3      4
  ARID2 WILD-TYPE    165    117    217
D32V3, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4             165
  CLUS_2             3             117
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        5      4      2      0
  ARID2 WILD-TYPE    217     77    166     42
D32V4, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             5             217
  CLUS_2             4              77
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        0      2      2      0
  ARID2 WILD-TYPE     52     60     66     74
D32V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             2              60
  CLUS_3             2              66
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        0      4      0
  ARID2 WILD-TYPE     67    127     58
D32V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             4             127
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        3      4      2      1      1
  ARID2 WILD-TYPE    129    105    107    132     29
D32V7, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             129
  CLUS_2             4             105
  CLUS_3             2             107
  CLUS_4             1             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID2 MUTATED        3      2      1      1      2      2      0
  ARID2 WILD-TYPE    131     69     35     65     89     39     74
D32V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             131
  CLUS_2             2              69
  CLUS_3             1              35
  CLUS_4             1              65
  CLUS_5             2              89
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        2      4      3      1
  ARID2 WILD-TYPE    134    103    180     82
D32V9, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             4             103
  CLUS_3             3             180
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        3      3      4
  ARID2 WILD-TYPE    219    181     99
D32V10, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             3             181
  CLUS_3             4              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        3      2      5
  ARID2 WILD-TYPE    181    160    154
D32V11, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             3             181
  CLUS_2             2             160
  CLUS_3             5             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        1      1      5      3
  ARID2 WILD-TYPE     89    137    183     86
D32V12, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             1             137
  CLUS_3             5             183
  CLUS_4             3              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = ZMIZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        0      0      0
  ZMIZ1 WILD-TYPE      9     10      8
D33V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      0      0      0
  ZMIZ1 WILD-TYPE      7      7      7      6
D33V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        0      3      6
  ZMIZ1 WILD-TYPE    169    117    215
D33V3, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             3             117
  CLUS_3             6             215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        2      2      5      0
  ZMIZ1 WILD-TYPE    220     79    163     42
D33V4, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             5             163
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      0      1      2
  ZMIZ1 WILD-TYPE     52     62     67     72
D33V5, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             0              62
  CLUS_3             1              67
  CLUS_4             2              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      1      1
  ZMIZ1 WILD-TYPE     66    130     57
D33V6, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             1             130
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        1      1      3      3      1
  ZMIZ1 WILD-TYPE    131    108    106    130     29
D33V7, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             3             106
  CLUS_4             3             130
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMIZ1 MUTATED        1      0      0      2      4      1      1
  ZMIZ1 WILD-TYPE    133     71     36     64     87     40     73
D33V8, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             2              64
  CLUS_5             4              87
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        1      2      3      3
  ZMIZ1 WILD-TYPE    135    105    180     80
D33V9, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2             105
  CLUS_3             3             180
  CLUS_4             3              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        5      2      2
  ZMIZ1 WILD-TYPE    217    182    101
D33V10, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             5             217
  CLUS_2             2             182
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        0      6      3
  ZMIZ1 WILD-TYPE    184    156    156
D33V11, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             6             156
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      4      4      1
  ZMIZ1 WILD-TYPE     90    134    184     88
D33V12, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             4             134
  CLUS_3             4             184
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = PDGFRA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        0      0      0
  PDGFRA WILD-TYPE      9     10      8
D34V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        0      0      0      0
  PDGFRA WILD-TYPE      7      7      7      6
D34V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        5      3      2
  PDGFRA WILD-TYPE    164    117    219
D34V3, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              5              164
  CLUS_2              3              117
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        3      5      2      0
  PDGFRA WILD-TYPE    219     76    166     42
D34V4, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              3              219
  CLUS_2              5               76
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        1      2      2      0
  PDGFRA WILD-TYPE     51     60     66     74
D34V5, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               60
  CLUS_3              2               66
  CLUS_4              0               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        1      4      0
  PDGFRA WILD-TYPE     66    127     58
D34V6, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1               66
  CLUS_2              4              127
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDGFRA MUTATED        1      7      2      0      0
  PDGFRA WILD-TYPE    131    102    107    133     30
D34V7, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1              131
  CLUS_2              7              102
  CLUS_3              2              107
  CLUS_4              0              133
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDGFRA MUTATED        0      3      1      0      1      5      0
  PDGFRA WILD-TYPE    134     68     35     66     90     36     74
D34V8, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              0              134
  CLUS_2              3               68
  CLUS_3              1               35
  CLUS_4              0               66
  CLUS_5              1               90
  CLUS_6              5               36
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        1      7      0      2
  PDGFRA WILD-TYPE    135    100    183     81
D34V9, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              1              135
  CLUS_2              7              100
  CLUS_3              0              183
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        2      1      7
  PDGFRA WILD-TYPE    220    183     96
D34V10, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1              183
  CLUS_3              7               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        3      3      4
  PDGFRA WILD-TYPE    181    159    155
D34V11, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              3              181
  CLUS_2              3              159
  CLUS_3              4              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        0      2      4      4
  PDGFRA WILD-TYPE     90    136    184     85
D34V12, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              0               90
  CLUS_2              2              136
  CLUS_3              4              184
  CLUS_4              4               85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = ZNF512B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        0      0      0
  ZNF512B WILD-TYPE      9     10      8
D35V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        0      0      0      0
  ZNF512B WILD-TYPE      7      7      7      6
D35V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        3      1      1
  ZNF512B WILD-TYPE    166    119    220
D35V3, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               3               166
  CLUS_2               1               119
  CLUS_3               1               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        3      1      1      0
  ZNF512B WILD-TYPE    219     80    167     42
D35V4, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               3               219
  CLUS_2               1                80
  CLUS_3               1               167
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        0      0      1      2
  ZNF512B WILD-TYPE     52     62     67     72
D35V5, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               0                52
  CLUS_2               0                62
  CLUS_3               1                67
  CLUS_4               2                72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        0      2      1
  ZNF512B WILD-TYPE     67    129     57
D35V6, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               0                67
  CLUS_2               2               129
  CLUS_3               1                57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF512B MUTATED        1      1      1      2      0
  ZNF512B WILD-TYPE    131    108    108    131     30
D35V7, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               131
  CLUS_2               1               108
  CLUS_3               1               108
  CLUS_4               2               131
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF512B MUTATED        1      0      0      1      1      1      1
  ZNF512B WILD-TYPE    133     71     36     65     90     40     73
D35V8, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               1                65
  CLUS_5               1                90
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        1      1      2      1
  ZNF512B WILD-TYPE    135    106    181     82
D35V9, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               135
  CLUS_2               1               106
  CLUS_3               2               181
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        2      2      1
  ZNF512B WILD-TYPE    220    182    102
D35V10, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               2               220
  CLUS_2               2               182
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF512B MUTATED        1      1      3
  ZNF512B WILD-TYPE    183    161    156
D35V11, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1               183
  CLUS_2               1               161
  CLUS_3               3               156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512B MUTATED        1      0      4      0
  ZNF512B WILD-TYPE     89    138    184     89
D35V12, multiclass
        clus
vv       ZNF512B MUTATED ZNF512B WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               4               184
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = PPL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        0      0      0
  PPL WILD-TYPE      9     10      8
D36V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        0      0      0      0
  PPL WILD-TYPE      7      7      7      6
D36V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        3      1      2
  PPL WILD-TYPE    166    119    219
D36V3, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3           166
  CLUS_2           1           119
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        3      1      2      0
  PPL WILD-TYPE    219     80    166     42
D36V4, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3           219
  CLUS_2           1            80
  CLUS_3           2           166
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        0      0      1      0
  PPL WILD-TYPE     52     62     67     74
D36V5, multiclass
[1] "Remove cluster labels:" "PPL MUTATED"           
clus
  PPL MUTATED PPL WILD-TYPE 
            1           255 
   TCGA-CS-4938    TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-CS-5393    TCGA-CS-5394    TCGA-CS-5396    TCGA-CS-5397    TCGA-CS-6186 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-CS-6188    TCGA-CS-6665    TCGA-CS-6666    TCGA-CS-6668    TCGA-CS-6669 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-CS-6670    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274    TCGA-DB-5275 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5279    TCGA-DB-5280 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DB-5281    TCGA-DB-A4X9    TCGA-DB-A4XA    TCGA-DB-A4XB    TCGA-DB-A4XC 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DB-A4XD    TCGA-DB-A4XE    TCGA-DB-A4XF    TCGA-DB-A4XG    TCGA-DB-A4XH 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-5847    TCGA-DU-5849    TCGA-DU-5851    TCGA-DU-5852    TCGA-DU-5853 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-5854    TCGA-DU-5855    TCGA-DU-5870    TCGA-DU-5871    TCGA-DU-5872 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-5874    TCGA-DU-6393    TCGA-DU-6394    TCGA-DU-6395    TCGA-DU-6396 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-6397    TCGA-DU-6399    TCGA-DU-6400    TCGA-DU-6401    TCGA-DU-6402 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-6403    TCGA-DU-6404    TCGA-DU-6405    TCGA-DU-6406    TCGA-DU-6407 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-6408    TCGA-DU-6410    TCGA-DU-6542    TCGA-DU-7006    TCGA-DU-7007 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-7008    TCGA-DU-7009    TCGA-DU-7010    TCGA-DU-7011    TCGA-DU-7012 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-7013    TCGA-DU-7015    TCGA-DU-7018    TCGA-DU-7019    TCGA-DU-7290 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-7292    TCGA-DU-7294    TCGA-DU-7298    TCGA-DU-7300    TCGA-DU-7301 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-7302    TCGA-DU-7304    TCGA-DU-7306    TCGA-DU-7309    TCGA-DU-8158 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-8161    TCGA-DU-8162    TCGA-DU-8163    TCGA-DU-8164    TCGA-DU-8165 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-8166    TCGA-DU-8167    TCGA-DU-8168    TCGA-DU-A5TP    TCGA-DU-A5TR 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-A5TS    TCGA-DU-A5TT    TCGA-DU-A5TU    TCGA-DU-A5TW    TCGA-DU-A5TY 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5305    TCGA-E1-5307 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5319    TCGA-E1-5322    TCGA-EZ-7264 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-5962    TCGA-FG-5963    TCGA-FG-5964    TCGA-FG-5965    TCGA-FG-6688 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-6689    TCGA-FG-6690    TCGA-FG-6691    TCGA-FG-7634    TCGA-FG-7636 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-7637    TCGA-FG-7638    TCGA-FG-7641    TCGA-FG-7643    TCGA-FG-8181 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-8182    TCGA-FG-8185    TCGA-FG-8186    TCGA-FG-8187    TCGA-FG-8188 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-8189    TCGA-FG-8191    TCGA-FG-A4MT    TCGA-FG-A4MU    TCGA-FG-A4MW 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-A4MX    TCGA-FG-A4MY    TCGA-FG-A60J    TCGA-HT-7467    TCGA-HT-7468 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7469    TCGA-HT-7470    TCGA-HT-7471    TCGA-HT-7472    TCGA-HT-7473 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7474    TCGA-HT-7475    TCGA-HT-7476    TCGA-HT-7477    TCGA-HT-7478 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7479    TCGA-HT-7480    TCGA-HT-7481    TCGA-HT-7482    TCGA-HT-7483 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7485    TCGA-HT-7601    TCGA-HT-7602    TCGA-HT-7603    TCGA-HT-7604 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7605    TCGA-HT-7606    TCGA-HT-7607    TCGA-HT-7608    TCGA-HT-7609 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7610    TCGA-HT-7611    TCGA-HT-7616    TCGA-HT-7620    TCGA-HT-7676 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7677    TCGA-HT-7680    TCGA-HT-7681    TCGA-HT-7684    TCGA-HT-7686 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7687    TCGA-HT-7688    TCGA-HT-7689    TCGA-HT-7690    TCGA-HT-7691 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7692    TCGA-HT-7693    TCGA-HT-7694    TCGA-HT-7695    TCGA-HT-7854 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7855    TCGA-HT-7856    TCGA-HT-7857    TCGA-HT-7858    TCGA-HT-7860 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7873    TCGA-HT-7874    TCGA-HT-7875    TCGA-HT-7877    TCGA-HT-7879 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7880    TCGA-HT-7881    TCGA-HT-7882    TCGA-HT-7884    TCGA-HT-7902 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-8010    TCGA-HT-8011    TCGA-HT-8012    TCGA-HT-8013    TCGA-HT-8015 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-8018    TCGA-HT-8019    TCGA-HT-8104    TCGA-HT-8105    TCGA-HT-8106 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-8107    TCGA-HT-8109    TCGA-HT-8110    TCGA-HT-8111    TCGA-HT-8113 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-8114    TCGA-HT-8558    TCGA-HT-8564    TCGA-HT-A4DV    TCGA-HT-A5R5 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-A5R7    TCGA-HT-A5R9    TCGA-HT-A5RB    TCGA-HW-7486    TCGA-HW-7487 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HW-7489    TCGA-HW-7490    TCGA-HW-7491    TCGA-HW-7495    TCGA-HW-8319 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HW-8320    TCGA-HW-8321    TCGA-HW-8322    TCGA-HW-A5KJ    TCGA-HW-A5KK 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HW-A5KM    TCGA-IK-7675    TCGA-IK-8125    TCGA-P5-A5ET    TCGA-P5-A5EU 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-P5-A5EV    TCGA-P5-A5EW    TCGA-P5-A5EX    TCGA-P5-A5EY    TCGA-P5-A5EZ 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-P5-A5F0    TCGA-P5-A5F1    TCGA-P5-A5F2    TCGA-P5-A5F4    TCGA-P5-A5F6 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        0      1      0
  PPL WILD-TYPE     67    130     58
D36V6, multiclass
[1] "Remove cluster labels:" "PPL MUTATED"           
clus
  PPL MUTATED PPL WILD-TYPE 
            1           255 
   TCGA-CS-4938    TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-CS-5393    TCGA-CS-5394    TCGA-CS-5396    TCGA-CS-5397    TCGA-CS-6186 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-CS-6188    TCGA-CS-6665    TCGA-CS-6666    TCGA-CS-6668    TCGA-CS-6669 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-CS-6670    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274    TCGA-DB-5275 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5279    TCGA-DB-5280 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DB-5281    TCGA-DB-A4X9    TCGA-DB-A4XA    TCGA-DB-A4XB    TCGA-DB-A4XC 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DB-A4XD    TCGA-DB-A4XE    TCGA-DB-A4XF    TCGA-DB-A4XG    TCGA-DB-A4XH 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-5847    TCGA-DU-5849    TCGA-DU-5851    TCGA-DU-5852    TCGA-DU-5853 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-5854    TCGA-DU-5855    TCGA-DU-5870    TCGA-DU-5871    TCGA-DU-5872 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-5874    TCGA-DU-6393    TCGA-DU-6394    TCGA-DU-6395    TCGA-DU-6396 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-6397    TCGA-DU-6399    TCGA-DU-6400    TCGA-DU-6401    TCGA-DU-6402 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-6403    TCGA-DU-6404    TCGA-DU-6405    TCGA-DU-6406    TCGA-DU-6407 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-6408    TCGA-DU-6410    TCGA-DU-6542    TCGA-DU-7006    TCGA-DU-7007 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-7008    TCGA-DU-7009    TCGA-DU-7010    TCGA-DU-7011    TCGA-DU-7012 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-7013    TCGA-DU-7015    TCGA-DU-7018    TCGA-DU-7019    TCGA-DU-7290 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-7292    TCGA-DU-7294    TCGA-DU-7298    TCGA-DU-7300    TCGA-DU-7301 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-7302    TCGA-DU-7304    TCGA-DU-7306    TCGA-DU-7309    TCGA-DU-8158 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-8161    TCGA-DU-8162    TCGA-DU-8163    TCGA-DU-8164    TCGA-DU-8165 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-8166    TCGA-DU-8167    TCGA-DU-8168    TCGA-DU-A5TP    TCGA-DU-A5TR 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-DU-A5TS    TCGA-DU-A5TT    TCGA-DU-A5TU    TCGA-DU-A5TW    TCGA-DU-A5TY 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5305    TCGA-E1-5307 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5319    TCGA-E1-5322    TCGA-EZ-7264 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-5962    TCGA-FG-5963    TCGA-FG-5964    TCGA-FG-5965    TCGA-FG-6688 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-6689    TCGA-FG-6690    TCGA-FG-6691    TCGA-FG-7634    TCGA-FG-7636 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-7637    TCGA-FG-7638    TCGA-FG-7641    TCGA-FG-7643    TCGA-FG-8181 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-8182    TCGA-FG-8185    TCGA-FG-8186    TCGA-FG-8187    TCGA-FG-8188 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-8189    TCGA-FG-8191    TCGA-FG-A4MT    TCGA-FG-A4MU    TCGA-FG-A4MW 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-FG-A4MX    TCGA-FG-A4MY    TCGA-FG-A60J    TCGA-HT-7467    TCGA-HT-7468 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7469    TCGA-HT-7470    TCGA-HT-7471    TCGA-HT-7472    TCGA-HT-7473 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7474    TCGA-HT-7475    TCGA-HT-7476    TCGA-HT-7477    TCGA-HT-7478 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7479    TCGA-HT-7480    TCGA-HT-7481    TCGA-HT-7482    TCGA-HT-7483 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7485    TCGA-HT-7601    TCGA-HT-7602    TCGA-HT-7603    TCGA-HT-7604 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7605    TCGA-HT-7606    TCGA-HT-7607    TCGA-HT-7608    TCGA-HT-7609 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7610    TCGA-HT-7611    TCGA-HT-7616    TCGA-HT-7620    TCGA-HT-7676 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7677    TCGA-HT-7680    TCGA-HT-7681    TCGA-HT-7684    TCGA-HT-7686 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7687    TCGA-HT-7688    TCGA-HT-7689    TCGA-HT-7690    TCGA-HT-7691 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7692    TCGA-HT-7693    TCGA-HT-7694    TCGA-HT-7695    TCGA-HT-7854 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7855    TCGA-HT-7856    TCGA-HT-7857    TCGA-HT-7858    TCGA-HT-7860 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7873    TCGA-HT-7874    TCGA-HT-7875    TCGA-HT-7877    TCGA-HT-7879 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-7880    TCGA-HT-7881    TCGA-HT-7882    TCGA-HT-7884    TCGA-HT-7902 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-8010    TCGA-HT-8011    TCGA-HT-8012    TCGA-HT-8013    TCGA-HT-8015 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-8018    TCGA-HT-8019    TCGA-HT-8104    TCGA-HT-8105    TCGA-HT-8106 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-8107    TCGA-HT-8109    TCGA-HT-8110    TCGA-HT-8111    TCGA-HT-8113 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-8114    TCGA-HT-8558    TCGA-HT-8564    TCGA-HT-A4DV    TCGA-HT-A5R5 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HT-A5R7    TCGA-HT-A5R9    TCGA-HT-A5RB    TCGA-HW-7486    TCGA-HW-7487 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HW-7489    TCGA-HW-7490    TCGA-HW-7491    TCGA-HW-7495    TCGA-HW-8319 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HW-8320    TCGA-HW-8321    TCGA-HW-8322    TCGA-HW-A5KJ    TCGA-HW-A5KK 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-HW-A5KM    TCGA-IK-7675    TCGA-IK-8125    TCGA-P5-A5ET    TCGA-P5-A5EU 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-P5-A5EV    TCGA-P5-A5EW    TCGA-P5-A5EX    TCGA-P5-A5EY    TCGA-P5-A5EZ 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
   TCGA-P5-A5F0    TCGA-P5-A5F1    TCGA-P5-A5F2    TCGA-P5-A5F4    TCGA-P5-A5F6 
"PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" "PPL WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        1      2      2      1      0
  PPL WILD-TYPE    131    107    107    132     30
D36V7, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           131
  CLUS_2           2           107
  CLUS_3           2           107
  CLUS_4           1           132
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPL MUTATED        1      0      0      1      2      2      0
  PPL WILD-TYPE    133     71     36     65     89     39     74
D36V8, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           133
  CLUS_2           0            71
  CLUS_3           0            36
  CLUS_4           1            65
  CLUS_5           2            89
  CLUS_6           2            39
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        0      3      3      0
  PPL WILD-TYPE    136    104    180     83
D36V9, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           0           136
  CLUS_2           3           104
  CLUS_3           3           180
  CLUS_4           0            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        2      2      2
  PPL WILD-TYPE    220    182    101
D36V10, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           2           220
  CLUS_2           2           182
  CLUS_3           2           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        1      4      1
  PPL WILD-TYPE    183    158    158
D36V11, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1           183
  CLUS_2           4           158
  CLUS_3           1           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        1      3      2      0
  PPL WILD-TYPE     89    135    186     89
D36V12, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            89
  CLUS_2           3           135
  CLUS_3           2           186
  CLUS_4           0            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = PRX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        0      0      0
  PRX WILD-TYPE      9     10      8
D37V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        0      0      0      0
  PRX WILD-TYPE      7      7      7      6
D37V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        3      5      2
  PRX WILD-TYPE    166    115    219
D37V3, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           3           166
  CLUS_2           5           115
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        2      5      2      1
  PRX WILD-TYPE    220     76    166     41
D37V4, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           2           220
  CLUS_2           5            76
  CLUS_3           2           166
  CLUS_4           1            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        1      0      1      4
  PRX WILD-TYPE     51     62     67     70
D37V5, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1            51
  CLUS_2           0            62
  CLUS_3           1            67
  CLUS_4           4            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        0      2      4
  PRX WILD-TYPE     67    129     54
D37V6, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           0            67
  CLUS_2           2           129
  CLUS_3           4            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRX MUTATED        1      4      1      3      1
  PRX WILD-TYPE    131    105    108    130     29
D37V7, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           131
  CLUS_2           4           105
  CLUS_3           1           108
  CLUS_4           3           130
  CLUS_5           1            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRX MUTATED        1      4      0      2      0      2      1
  PRX WILD-TYPE    133     67     36     64     91     39     73
D37V8, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           133
  CLUS_2           4            67
  CLUS_3           0            36
  CLUS_4           2            64
  CLUS_5           0            91
  CLUS_6           2            39
  CLUS_7           1            73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        1      3      5      1
  PRX WILD-TYPE    135    104    178     82
D37V9, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           135
  CLUS_2           3           104
  CLUS_3           5           178
  CLUS_4           1            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        1      2      7
  PRX WILD-TYPE    221    182     96
D37V10, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1           221
  CLUS_2           2           182
  CLUS_3           7            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PRX MUTATED        2      2      6
  PRX WILD-TYPE    182    160    153
D37V11, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           2           182
  CLUS_2           2           160
  CLUS_3           6           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRX MUTATED        1      1      3      5
  PRX WILD-TYPE     89    137    185     84
D37V12, multiclass
        clus
vv       PRX MUTATED PRX WILD-TYPE
  CLUS_1           1            89
  CLUS_2           1           137
  CLUS_3           3           185
  CLUS_4           5            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = NKD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        0      0      0
  NKD2 WILD-TYPE      9     10      8
D38V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      0      0      0
  NKD2 WILD-TYPE      7      7      7      6
D38V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        1      1      2
  NKD2 WILD-TYPE    168    119    219
D38V3, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1            168
  CLUS_2            1            119
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        2      1      1      0
  NKD2 WILD-TYPE    220     80    167     42
D38V4, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      0      1      0
  NKD2 WILD-TYPE     52     62     67     74
D38V5, multiclass
[1] "Remove cluster labels:" "NKD2 MUTATED"          
clus
  NKD2 MUTATED NKD2 WILD-TYPE 
             1            255 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140     TCGA-DH-5141 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DU-5847 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        0      1      0
  NKD2 WILD-TYPE     67    130     58
D38V6, multiclass
[1] "Remove cluster labels:" "NKD2 MUTATED"          
clus
  NKD2 MUTATED NKD2 WILD-TYPE 
             1            255 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140     TCGA-DH-5141 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DU-5847 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"NKD2 WILD-TYPE" "NKD2 WILD-TYPE" "NKD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKD2 MUTATED        2      1      1      0      0
  NKD2 WILD-TYPE    130    108    108    133     30
D38V7, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NKD2 MUTATED        1      1      1      1      0      0      0
  NKD2 WILD-TYPE    133     70     35     65     91     41     74
D38V8, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        0      2      1      1
  NKD2 WILD-TYPE    136    105    182     82
D38V9, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            1            182
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        2      1      1
  NKD2 WILD-TYPE    220    183    102
D38V10, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1            183
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKD2 MUTATED        2      1      1
  NKD2 WILD-TYPE    182    161    158
D38V11, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            2            182
  CLUS_2            1            161
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKD2 MUTATED        1      1      1      1
  NKD2 WILD-TYPE     89    137    187     88
D38V12, multiclass
        clus
vv       NKD2 MUTATED NKD2 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            1            187
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        0      1      0
  IRS4 WILD-TYPE      9      9      8
D39V1, multiclass
[1] "Remove cluster labels:" "IRS4 MUTATED"          
clus
  IRS4 MUTATED IRS4 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        0      1      0      0
  IRS4 WILD-TYPE      7      6      7      6
D39V2, multiclass
[1] "Remove cluster labels:" "IRS4 MUTATED"          
clus
  IRS4 MUTATED IRS4 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"IRS4 WILD-TYPE" "IRS4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      4      1
  IRS4 WILD-TYPE    167    116    220
D39V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            4            116
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3      2      1      1
  IRS4 WILD-TYPE    219     79    167     41
D39V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            2             79
  CLUS_3            1            167
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        0      1      2      1
  IRS4 WILD-TYPE     52     61     66     73
D39V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            1             61
  CLUS_3            2             66
  CLUS_4            1             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        0      2      2
  IRS4 WILD-TYPE     67    129     56
D39V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            2            129
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        3      2      0      2      0
  IRS4 WILD-TYPE    129    107    109    131     30
D39V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            129
  CLUS_2            2            107
  CLUS_3            0            109
  CLUS_4            2            131
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS4 MUTATED        3      0      1      1      0      2      0
  IRS4 WILD-TYPE    131     71     35     65     91     39     74
D39V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3            131
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        1      3      3      0
  IRS4 WILD-TYPE    135    104    180     83
D39V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            3            104
  CLUS_3            3            180
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        2      3      2
  IRS4 WILD-TYPE    220    181    101
D39V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            3            181
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        1      2      4
  IRS4 WILD-TYPE    183    160    155
D39V11, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            2            160
  CLUS_3            4            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        1      2      3      1
  IRS4 WILD-TYPE     89    136    185     88
D39V12, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            2            136
  CLUS_3            3            185
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = SPTAN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        1      0      0
  SPTAN1 WILD-TYPE      8     10      8
D40V1, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5141       TCGA-DH-5143       TCGA-DH-5144 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        0      1      0      0
  SPTAN1 WILD-TYPE      7      6      7      6
D40V2, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-CS-5396       TCGA-DB-5270 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-DH-5140       TCGA-DH-5141       TCGA-DH-5143       TCGA-DH-5144 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        1      2      2
  SPTAN1 WILD-TYPE    168    118    219
D40V3, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              1              168
  CLUS_2              2              118
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        2      2      1      0
  SPTAN1 WILD-TYPE    220     79    167     42
D40V4, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              2               79
  CLUS_3              1              167
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        0      1      2      1
  SPTAN1 WILD-TYPE     52     61     66     73
D40V5, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              1               61
  CLUS_3              2               66
  CLUS_4              1               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      3      1
  SPTAN1 WILD-TYPE     67    128     57
D40V6, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              3              128
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTAN1 MUTATED        2      1      0      2      0
  SPTAN1 WILD-TYPE    130    108    109    131     30
D40V7, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              1              108
  CLUS_3              0              109
  CLUS_4              2              131
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPTAN1 MUTATED        1      0      0      1      0      2      1
  SPTAN1 WILD-TYPE    133     71     36     65     91     39     73
D40V8, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              2               39
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        1      2      2      0
  SPTAN1 WILD-TYPE    135    105    181     83
D40V9, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              2              105
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        2      1      2
  SPTAN1 WILD-TYPE    220    183    101
D40V10, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1              183
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        1      1      3
  SPTAN1 WILD-TYPE    183    161    156
D40V11, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              1              183
  CLUS_2              1              161
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        1      1      2      1
  SPTAN1 WILD-TYPE     89    137    186     88
D40V12, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              1              137
  CLUS_3              2              186
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = CIB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      0      0
  CIB1 WILD-TYPE      9     10      8
D41V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      0      0      0
  CIB1 WILD-TYPE      7      7      7      6
D41V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        2      1      1
  CIB1 WILD-TYPE    167    119    220
D41V3, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        2      0      2      0
  CIB1 WILD-TYPE    220     81    166     42
D41V4, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            0             81
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      2      0      1
  CIB1 WILD-TYPE     52     60     68     73
D41V5, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             60
  CLUS_3            0             68
  CLUS_4            1             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      2      1
  CIB1 WILD-TYPE     67    129     57
D41V6, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            2            129
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIB1 MUTATED        0      1      2      1      0
  CIB1 WILD-TYPE    132    108    107    132     30
D41V7, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            132
  CLUS_2            1            108
  CLUS_3            2            107
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIB1 MUTATED        0      0      1      0      1      1      1
  CIB1 WILD-TYPE    134     71     35     66     90     40     73
D41V8, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      1      1      2
  CIB1 WILD-TYPE    136    106    182     81
D41V9, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1            106
  CLUS_3            1            182
  CLUS_4            2             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      4      0
  CIB1 WILD-TYPE    222    180    103
D41V10, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            222
  CLUS_2            4            180
  CLUS_3            0            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB1 MUTATED        0      3      1
  CIB1 WILD-TYPE    184    159    158
D41V11, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            3            159
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB1 MUTATED        0      3      1      0
  CIB1 WILD-TYPE     90    135    187     89
D41V12, multiclass
        clus
vv       CIB1 MUTATED CIB1 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            3            135
  CLUS_3            1            187
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = EIF1AX MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF1AX MUTATED        0      0      0
  EIF1AX WILD-TYPE      9     10      8
D42V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        0      0      0      0
  EIF1AX WILD-TYPE      7      7      7      6
D42V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF1AX MUTATED        0      1      3
  EIF1AX WILD-TYPE    169    119    218
D42V3, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              0              169
  CLUS_2              1              119
  CLUS_3              3              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        4      0      0      0
  EIF1AX WILD-TYPE    218     81    168     42
D42V4, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              4              218
  CLUS_2              0               81
  CLUS_3              0              168
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        0      0      2      2
  EIF1AX WILD-TYPE     52     62     66     72
D42V5, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              0               52
  CLUS_2              0               62
  CLUS_3              2               66
  CLUS_4              2               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF1AX MUTATED        0      2      2
  EIF1AX WILD-TYPE     67    129     56
D42V6, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              0               67
  CLUS_2              2              129
  CLUS_3              2               56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF1AX MUTATED        2      1      0      1      0
  EIF1AX WILD-TYPE    130    108    109    132     30
D42V7, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              2              130
  CLUS_2              1              108
  CLUS_3              0              109
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF1AX MUTATED        2      0      0      1      0      1      0
  EIF1AX WILD-TYPE    132     71     36     65     91     40     74
D42V8, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              2              132
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        2      1      1      0
  EIF1AX WILD-TYPE    134    106    182     83
D42V9, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              2              134
  CLUS_2              1              106
  CLUS_3              1              182
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF1AX MUTATED        3      0      1
  EIF1AX WILD-TYPE    219    184    102
D42V10, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              3              219
  CLUS_2              0              184
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF1AX MUTATED        3      1      0
  EIF1AX WILD-TYPE    181    161    159
D42V11, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              3              181
  CLUS_2              1              161
  CLUS_3              0              159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        2      2      0      0
  EIF1AX WILD-TYPE     88    136    188     89
D42V12, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              2               88
  CLUS_2              2              136
  CLUS_3              0              188
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = WRN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      0      0
  WRN WILD-TYPE      9     10      8
D43V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      0      0      0
  WRN WILD-TYPE      7      7      7      6
D43V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      1      4
  WRN WILD-TYPE    169    119    217
D43V3, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           169
  CLUS_2           1           119
  CLUS_3           4           217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      4      0
  WRN WILD-TYPE    222     80    164     42
D43V4, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           222
  CLUS_2           1            80
  CLUS_3           4           164
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      0      1      0
  WRN WILD-TYPE     52     62     67     74
D43V5, multiclass
[1] "Remove cluster labels:" "WRN MUTATED"           
clus
  WRN MUTATED WRN WILD-TYPE 
            1           255 
   TCGA-CS-4938    TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-CS-5393    TCGA-CS-5394    TCGA-CS-5396    TCGA-CS-5397    TCGA-CS-6186 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-CS-6188    TCGA-CS-6665    TCGA-CS-6666    TCGA-CS-6668    TCGA-CS-6669 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-CS-6670    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274    TCGA-DB-5275 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5279    TCGA-DB-5280 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DB-5281    TCGA-DB-A4X9    TCGA-DB-A4XA    TCGA-DB-A4XB    TCGA-DB-A4XC 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DB-A4XD    TCGA-DB-A4XE    TCGA-DB-A4XF    TCGA-DB-A4XG    TCGA-DB-A4XH 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-5847    TCGA-DU-5849    TCGA-DU-5851    TCGA-DU-5852    TCGA-DU-5853 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-5854    TCGA-DU-5855    TCGA-DU-5870    TCGA-DU-5871    TCGA-DU-5872 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-5874    TCGA-DU-6393    TCGA-DU-6394    TCGA-DU-6395    TCGA-DU-6396 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-6397    TCGA-DU-6399    TCGA-DU-6400    TCGA-DU-6401    TCGA-DU-6402 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-6403    TCGA-DU-6404    TCGA-DU-6405    TCGA-DU-6406    TCGA-DU-6407 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-6408    TCGA-DU-6410    TCGA-DU-6542    TCGA-DU-7006    TCGA-DU-7007 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-7008    TCGA-DU-7009    TCGA-DU-7010    TCGA-DU-7011    TCGA-DU-7012 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-7013    TCGA-DU-7015    TCGA-DU-7018    TCGA-DU-7019    TCGA-DU-7290 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-7292    TCGA-DU-7294    TCGA-DU-7298    TCGA-DU-7300    TCGA-DU-7301 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-7302    TCGA-DU-7304    TCGA-DU-7306    TCGA-DU-7309    TCGA-DU-8158 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-8161    TCGA-DU-8162    TCGA-DU-8163    TCGA-DU-8164    TCGA-DU-8165 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-8166    TCGA-DU-8167    TCGA-DU-8168    TCGA-DU-A5TP    TCGA-DU-A5TR 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-A5TS    TCGA-DU-A5TT    TCGA-DU-A5TU    TCGA-DU-A5TW    TCGA-DU-A5TY 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5305    TCGA-E1-5307 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5319    TCGA-E1-5322    TCGA-EZ-7264 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-5962    TCGA-FG-5963    TCGA-FG-5964    TCGA-FG-5965    TCGA-FG-6688 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-6689    TCGA-FG-6690    TCGA-FG-6691    TCGA-FG-7634    TCGA-FG-7636 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-7637    TCGA-FG-7638    TCGA-FG-7641    TCGA-FG-7643    TCGA-FG-8181 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-8182    TCGA-FG-8185    TCGA-FG-8186    TCGA-FG-8187    TCGA-FG-8188 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-8189    TCGA-FG-8191    TCGA-FG-A4MT    TCGA-FG-A4MU    TCGA-FG-A4MW 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-A4MX    TCGA-FG-A4MY    TCGA-FG-A60J    TCGA-HT-7467    TCGA-HT-7468 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7469    TCGA-HT-7470    TCGA-HT-7471    TCGA-HT-7472    TCGA-HT-7473 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7474    TCGA-HT-7475    TCGA-HT-7476    TCGA-HT-7477    TCGA-HT-7478 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7479    TCGA-HT-7480    TCGA-HT-7481    TCGA-HT-7482    TCGA-HT-7483 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7485    TCGA-HT-7601    TCGA-HT-7602    TCGA-HT-7603    TCGA-HT-7604 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7605    TCGA-HT-7606    TCGA-HT-7607    TCGA-HT-7608    TCGA-HT-7609 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7610    TCGA-HT-7611    TCGA-HT-7616    TCGA-HT-7620    TCGA-HT-7676 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7677    TCGA-HT-7680    TCGA-HT-7681    TCGA-HT-7684    TCGA-HT-7686 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7687    TCGA-HT-7688    TCGA-HT-7689    TCGA-HT-7690    TCGA-HT-7691 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7692    TCGA-HT-7693    TCGA-HT-7694    TCGA-HT-7695    TCGA-HT-7854 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7855    TCGA-HT-7856    TCGA-HT-7857    TCGA-HT-7858    TCGA-HT-7860 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7873    TCGA-HT-7874    TCGA-HT-7875    TCGA-HT-7877    TCGA-HT-7879 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7880    TCGA-HT-7881    TCGA-HT-7882    TCGA-HT-7884    TCGA-HT-7902 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-8010    TCGA-HT-8011    TCGA-HT-8012    TCGA-HT-8013    TCGA-HT-8015 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-8018    TCGA-HT-8019    TCGA-HT-8104    TCGA-HT-8105    TCGA-HT-8106 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-8107    TCGA-HT-8109    TCGA-HT-8110    TCGA-HT-8111    TCGA-HT-8113 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-8114    TCGA-HT-8558    TCGA-HT-8564    TCGA-HT-A4DV    TCGA-HT-A5R5 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-A5R7    TCGA-HT-A5R9    TCGA-HT-A5RB    TCGA-HW-7486    TCGA-HW-7487 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HW-7489    TCGA-HW-7490    TCGA-HW-7491    TCGA-HW-7495    TCGA-HW-8319 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HW-8320    TCGA-HW-8321    TCGA-HW-8322    TCGA-HW-A5KJ    TCGA-HW-A5KK 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HW-A5KM    TCGA-IK-7675    TCGA-IK-8125    TCGA-P5-A5ET    TCGA-P5-A5EU 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-P5-A5EV    TCGA-P5-A5EW    TCGA-P5-A5EX    TCGA-P5-A5EY    TCGA-P5-A5EZ 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-P5-A5F0    TCGA-P5-A5F1    TCGA-P5-A5F2    TCGA-P5-A5F4    TCGA-P5-A5F6 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      1      0
  WRN WILD-TYPE     67    130     58
D43V6, multiclass
[1] "Remove cluster labels:" "WRN MUTATED"           
clus
  WRN MUTATED WRN WILD-TYPE 
            1           255 
   TCGA-CS-4938    TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-CS-5393    TCGA-CS-5394    TCGA-CS-5396    TCGA-CS-5397    TCGA-CS-6186 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-CS-6188    TCGA-CS-6665    TCGA-CS-6666    TCGA-CS-6668    TCGA-CS-6669 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-CS-6670    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274    TCGA-DB-5275 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5279    TCGA-DB-5280 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DB-5281    TCGA-DB-A4X9    TCGA-DB-A4XA    TCGA-DB-A4XB    TCGA-DB-A4XC 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DB-A4XD    TCGA-DB-A4XE    TCGA-DB-A4XF    TCGA-DB-A4XG    TCGA-DB-A4XH 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-5847    TCGA-DU-5849    TCGA-DU-5851    TCGA-DU-5852    TCGA-DU-5853 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-5854    TCGA-DU-5855    TCGA-DU-5870    TCGA-DU-5871    TCGA-DU-5872 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-5874    TCGA-DU-6393    TCGA-DU-6394    TCGA-DU-6395    TCGA-DU-6396 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-6397    TCGA-DU-6399    TCGA-DU-6400    TCGA-DU-6401    TCGA-DU-6402 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-6403    TCGA-DU-6404    TCGA-DU-6405    TCGA-DU-6406    TCGA-DU-6407 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-6408    TCGA-DU-6410    TCGA-DU-6542    TCGA-DU-7006    TCGA-DU-7007 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-7008    TCGA-DU-7009    TCGA-DU-7010    TCGA-DU-7011    TCGA-DU-7012 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-7013    TCGA-DU-7015    TCGA-DU-7018    TCGA-DU-7019    TCGA-DU-7290 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-7292    TCGA-DU-7294    TCGA-DU-7298    TCGA-DU-7300    TCGA-DU-7301 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-7302    TCGA-DU-7304    TCGA-DU-7306    TCGA-DU-7309    TCGA-DU-8158 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-8161    TCGA-DU-8162    TCGA-DU-8163    TCGA-DU-8164    TCGA-DU-8165 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-8166    TCGA-DU-8167    TCGA-DU-8168    TCGA-DU-A5TP    TCGA-DU-A5TR 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-DU-A5TS    TCGA-DU-A5TT    TCGA-DU-A5TU    TCGA-DU-A5TW    TCGA-DU-A5TY 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5305    TCGA-E1-5307 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5319    TCGA-E1-5322    TCGA-EZ-7264 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-5962    TCGA-FG-5963    TCGA-FG-5964    TCGA-FG-5965    TCGA-FG-6688 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-6689    TCGA-FG-6690    TCGA-FG-6691    TCGA-FG-7634    TCGA-FG-7636 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-7637    TCGA-FG-7638    TCGA-FG-7641    TCGA-FG-7643    TCGA-FG-8181 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-8182    TCGA-FG-8185    TCGA-FG-8186    TCGA-FG-8187    TCGA-FG-8188 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-8189    TCGA-FG-8191    TCGA-FG-A4MT    TCGA-FG-A4MU    TCGA-FG-A4MW 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-FG-A4MX    TCGA-FG-A4MY    TCGA-FG-A60J    TCGA-HT-7467    TCGA-HT-7468 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7469    TCGA-HT-7470    TCGA-HT-7471    TCGA-HT-7472    TCGA-HT-7473 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7474    TCGA-HT-7475    TCGA-HT-7476    TCGA-HT-7477    TCGA-HT-7478 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7479    TCGA-HT-7480    TCGA-HT-7481    TCGA-HT-7482    TCGA-HT-7483 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7485    TCGA-HT-7601    TCGA-HT-7602    TCGA-HT-7603    TCGA-HT-7604 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7605    TCGA-HT-7606    TCGA-HT-7607    TCGA-HT-7608    TCGA-HT-7609 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7610    TCGA-HT-7611    TCGA-HT-7616    TCGA-HT-7620    TCGA-HT-7676 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7677    TCGA-HT-7680    TCGA-HT-7681    TCGA-HT-7684    TCGA-HT-7686 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7687    TCGA-HT-7688    TCGA-HT-7689    TCGA-HT-7690    TCGA-HT-7691 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7692    TCGA-HT-7693    TCGA-HT-7694    TCGA-HT-7695    TCGA-HT-7854 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7855    TCGA-HT-7856    TCGA-HT-7857    TCGA-HT-7858    TCGA-HT-7860 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7873    TCGA-HT-7874    TCGA-HT-7875    TCGA-HT-7877    TCGA-HT-7879 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-7880    TCGA-HT-7881    TCGA-HT-7882    TCGA-HT-7884    TCGA-HT-7902 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-8010    TCGA-HT-8011    TCGA-HT-8012    TCGA-HT-8013    TCGA-HT-8015 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-8018    TCGA-HT-8019    TCGA-HT-8104    TCGA-HT-8105    TCGA-HT-8106 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-8107    TCGA-HT-8109    TCGA-HT-8110    TCGA-HT-8111    TCGA-HT-8113 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-8114    TCGA-HT-8558    TCGA-HT-8564    TCGA-HT-A4DV    TCGA-HT-A5R5 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HT-A5R7    TCGA-HT-A5R9    TCGA-HT-A5RB    TCGA-HW-7486    TCGA-HW-7487 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HW-7489    TCGA-HW-7490    TCGA-HW-7491    TCGA-HW-7495    TCGA-HW-8319 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HW-8320    TCGA-HW-8321    TCGA-HW-8322    TCGA-HW-A5KJ    TCGA-HW-A5KK 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HW-A5KM    TCGA-IK-7675    TCGA-IK-8125    TCGA-P5-A5ET    TCGA-P5-A5EU 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-P5-A5EV    TCGA-P5-A5EW    TCGA-P5-A5EX    TCGA-P5-A5EY    TCGA-P5-A5EZ 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-P5-A5F0    TCGA-P5-A5F1    TCGA-P5-A5F2    TCGA-P5-A5F4    TCGA-P5-A5F6 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WRN MUTATED        0      1      4      0      0
  WRN WILD-TYPE    132    108    105    133     30
D43V7, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           132
  CLUS_2           1           108
  CLUS_3           4           105
  CLUS_4           0           133
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WRN MUTATED        0      0      2      0      2      1      0
  WRN WILD-TYPE    134     71     34     66     89     40     74
D43V8, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           134
  CLUS_2           0            71
  CLUS_3           2            34
  CLUS_4           0            66
  CLUS_5           2            89
  CLUS_6           1            40
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      1      1      3
  WRN WILD-TYPE    136    106    182     80
D43V9, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           136
  CLUS_2           1           106
  CLUS_3           1           182
  CLUS_4           3            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      2      1
  WRN WILD-TYPE    220    182    102
D43V10, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2           220
  CLUS_2           2           182
  CLUS_3           1           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      4      1
  WRN WILD-TYPE    184    158    158
D43V11, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0           184
  CLUS_2           4           158
  CLUS_3           1           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        0      3      2      0
  WRN WILD-TYPE     90    135    186     89
D43V12, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0            90
  CLUS_2           3           135
  CLUS_3           2           186
  CLUS_4           0            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = SCN4A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        0      1      0
  SCN4A WILD-TYPE      9      9      8
D44V1, multiclass
[1] "Remove cluster labels:" "SCN4A MUTATED"         
clus
  SCN4A MUTATED SCN4A WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        0      0      1      0
  SCN4A WILD-TYPE      7      7      6      6
D44V2, multiclass
[1] "Remove cluster labels:" "SCN4A MUTATED"         
clus
  SCN4A MUTATED SCN4A WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SCN4A WILD-TYPE" "SCN4A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        0      1      5
  SCN4A WILD-TYPE    169    119    216
D44V3, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3             5             216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        1      1      3      1
  SCN4A WILD-TYPE    221     80    165     41
D44V4, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             3             165
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        1      0      1      2
  SCN4A WILD-TYPE     51     62     67     72
D44V5, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              62
  CLUS_3             1              67
  CLUS_4             2              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        1      2      1
  SCN4A WILD-TYPE     66    129     57
D44V6, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN4A MUTATED        0      1      2      3      0
  SCN4A WILD-TYPE    132    108    107    130     30
D44V7, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3             2             107
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCN4A MUTATED        0      0      0      1      1      1      3
  SCN4A WILD-TYPE    134     71     36     65     90     40     71
D44V8, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             3              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        1      1      4      0
  SCN4A WILD-TYPE    135    106    179     83
D44V9, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1             106
  CLUS_3             4             179
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        2      3      1
  SCN4A WILD-TYPE    220    181    102
D44V10, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             2             220
  CLUS_2             3             181
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN4A MUTATED        0      2      4
  SCN4A WILD-TYPE    184    160    155
D44V11, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0             184
  CLUS_2             2             160
  CLUS_3             4             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN4A MUTATED        0      2      4      0
  SCN4A WILD-TYPE     90    136    184     89
D44V12, multiclass
        clus
vv       SCN4A MUTATED SCN4A WILD-TYPE
  CLUS_1             0              90
  CLUS_2             2             136
  CLUS_3             4             184
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = PLCG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        0      0      1
  PLCG1 WILD-TYPE      9     10      7
D45V1, multiclass
[1] "Remove cluster labels:" "PLCG1 MUTATED"         
clus
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        1      0      0      0
  PLCG1 WILD-TYPE      6      7      7      6
D45V2, multiclass
[1] "Remove cluster labels:" "PLCG1 MUTATED"         
clus
  PLCG1 MUTATED PLCG1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"PLCG1 WILD-TYPE" "PLCG1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        0      5      1
  PLCG1 WILD-TYPE    169    115    220
D45V3, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             5             115
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        1      4      1      0
  PLCG1 WILD-TYPE    221     77    167     42
D45V4, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             4              77
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        0      3      0      0
  PLCG1 WILD-TYPE     52     59     68     74
D45V5, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              59
  CLUS_3             0              68
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        0      3      0
  PLCG1 WILD-TYPE     67    128     58
D45V6, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             3             128
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLCG1 MUTATED        1      4      0      0      1
  PLCG1 WILD-TYPE    131    105    109    133     29
D45V7, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             4             105
  CLUS_3             0             109
  CLUS_4             0             133
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLCG1 MUTATED        1      3      0      1      1      0      0
  PLCG1 WILD-TYPE    133     68     36     65     90     41     74
D45V8, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             3              68
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        5      0      1      0
  PLCG1 WILD-TYPE    131    107    182     83
D45V9, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             5             131
  CLUS_2             0             107
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        3      0      3
  PLCG1 WILD-TYPE    219    184    100
D45V10, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0             184
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        5      1      0
  PLCG1 WILD-TYPE    179    161    159
D45V11, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             5             179
  CLUS_2             1             161
  CLUS_3             0             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        0      2      1      3
  PLCG1 WILD-TYPE     90    136    187     86
D45V12, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             2             136
  CLUS_3             1             187
  CLUS_4             3              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DLC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        0      0      0
  DLC1 WILD-TYPE      9     10      8
D46V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        0      0      0      0
  DLC1 WILD-TYPE      7      7      7      6
D46V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        1      4      1
  DLC1 WILD-TYPE    168    116    220
D46V3, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            168
  CLUS_2            4            116
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        2      3      1      0
  DLC1 WILD-TYPE    220     78    167     42
D46V4, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            3             78
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        1      1      2      0
  DLC1 WILD-TYPE     51     61     66     74
D46V5, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             61
  CLUS_3            2             66
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        1      2      1
  DLC1 WILD-TYPE     66    129     57
D46V6, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            2            129
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLC1 MUTATED        2      3      0      1      0
  DLC1 WILD-TYPE    130    106    109    132     30
D46V7, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            3            106
  CLUS_3            0            109
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLC1 MUTATED        2      2      0      0      0      1      1
  DLC1 WILD-TYPE    132     69     36     66     91     40     73
D46V8, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            2             69
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        1      2      2      1
  DLC1 WILD-TYPE    135    105    181     82
D46V9, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            2            105
  CLUS_3            2            181
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        1      2      3
  DLC1 WILD-TYPE    221    182    100
D46V10, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            2            182
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        3      1      2
  DLC1 WILD-TYPE    181    161    157
D46V11, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            3            181
  CLUS_2            1            161
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        0      0      4      2
  DLC1 WILD-TYPE     90    138    184     87
D46V12, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            0            138
  CLUS_3            4            184
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = TMEM216 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        0      0      0
  TMEM216 WILD-TYPE      9     10      8
D47V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      0      0      0
  TMEM216 WILD-TYPE      7      7      7      6
D47V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        2      1      0
  TMEM216 WILD-TYPE    167    119    221
D47V3, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               2               167
  CLUS_2               1               119
  CLUS_3               0               221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        2      0      1      0
  TMEM216 WILD-TYPE    220     81    167     42
D47V4, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               0                81
  CLUS_3               1               167
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        1      1      0      1
  TMEM216 WILD-TYPE     51     61     68     73
D47V5, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               1                61
  CLUS_3               0                68
  CLUS_4               1                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        1      1      1
  TMEM216 WILD-TYPE     66    130     57
D47V6, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1                66
  CLUS_2               1               130
  CLUS_3               1                57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM216 MUTATED        1      0      1      1      0
  TMEM216 WILD-TYPE    131    109    108    132     30
D47V7, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               0               109
  CLUS_3               1               108
  CLUS_4               1               132
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM216 MUTATED        1      0      1      0      0      0      1
  TMEM216 WILD-TYPE    133     71     35     66     91     41     73
D47V8, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               1                35
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               0                41
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      1      1      1
  TMEM216 WILD-TYPE    136    106    182     82
D47V9, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0               136
  CLUS_2               1               106
  CLUS_3               1               182
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        1      2      0
  TMEM216 WILD-TYPE    221    182    103
D47V10, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               2               182
  CLUS_3               0               103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM216 MUTATED        0      2      1
  TMEM216 WILD-TYPE    184    160    158
D47V11, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0               184
  CLUS_2               2               160
  CLUS_3               1               158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM216 MUTATED        0      2      1      0
  TMEM216 WILD-TYPE     90    136    187     89
D47V12, multiclass
        clus
vv       TMEM216 MUTATED TMEM216 WILD-TYPE
  CLUS_1               0                90
  CLUS_2               2               136
  CLUS_3               1               187
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = MYT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        0      0      0
  MYT1 WILD-TYPE      9     10      8
D48V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      0      0      0
  MYT1 WILD-TYPE      7      7      7      6
D48V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        5      1      0
  MYT1 WILD-TYPE    164    119    221
D48V3, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            5            164
  CLUS_2            1            119
  CLUS_3            0            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        4      1      0      1
  MYT1 WILD-TYPE    218     80    168     41
D48V4, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            4            218
  CLUS_2            1             80
  CLUS_3            0            168
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      0      1      1
  MYT1 WILD-TYPE     52     62     67     73
D48V5, multiclass
[1] "Remove cluster labels:" "MYT1 MUTATED"          
clus
  MYT1 MUTATED MYT1 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8019     TCGA-HT-8104 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        0      1      1
  MYT1 WILD-TYPE     67    130     57
D48V6, multiclass
[1] "Remove cluster labels:" "MYT1 MUTATED"          
clus
  MYT1 MUTATED MYT1 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8019     TCGA-HT-8104 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"MYT1 WILD-TYPE" "MYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYT1 MUTATED        2      3      0      1      0
  MYT1 WILD-TYPE    130    106    109    132     30
D48V7, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            3            106
  CLUS_3            0            109
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYT1 MUTATED        2      0      0      1      0      3      0
  MYT1 WILD-TYPE    132     71     36     65     91     38     74
D48V8, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            3             38
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        0      2      3      1
  MYT1 WILD-TYPE    136    105    180     82
D48V9, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        2      2      2
  MYT1 WILD-TYPE    220    182    101
D48V10, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            2            182
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYT1 MUTATED        1      2      3
  MYT1 WILD-TYPE    183    160    156
D48V11, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            2            160
  CLUS_3            3            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYT1 MUTATED        1      1      3      1
  MYT1 WILD-TYPE     89    137    185     88
D48V12, multiclass
        clus
vv       MYT1 MUTATED MYT1 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            3            185
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = SMARCB1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      0      0
  SMARCB1 WILD-TYPE      9     10      8
D49V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      0      0      0
  SMARCB1 WILD-TYPE      7      7      7      6
D49V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        2      1      1
  SMARCB1 WILD-TYPE    167    119    220
D49V3, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               167
  CLUS_2               1               119
  CLUS_3               1               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        2      1      1      0
  SMARCB1 WILD-TYPE    220     80    167     42
D49V4, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1                80
  CLUS_3               1               167
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      0      3      0
  SMARCB1 WILD-TYPE     52     62     65     74
D49V5, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               0                62
  CLUS_3               3                65
  CLUS_4               0                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      3      0
  SMARCB1 WILD-TYPE     67    128     58
D49V6, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                67
  CLUS_2               3               128
  CLUS_3               0                58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        1      1      0      2      0
  SMARCB1 WILD-TYPE    131    108    109    131     30
D49V7, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               1               108
  CLUS_3               0               109
  CLUS_4               2               131
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCB1 MUTATED        2      0      0      0      0      1      1
  SMARCB1 WILD-TYPE    132     71     36     66     91     40     73
D49V8, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               132
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      1      3      0
  SMARCB1 WILD-TYPE    136    106    180     83
D49V9, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0               136
  CLUS_2               1               106
  CLUS_3               3               180
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        1      2      1
  SMARCB1 WILD-TYPE    221    182    102
D49V10, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               2               182
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      1      3
  SMARCB1 WILD-TYPE    184    161    156
D49V11, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0               184
  CLUS_2               1               161
  CLUS_3               3               156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      0      3      0
  SMARCB1 WILD-TYPE     89    138    185     89
D49V12, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               3               185
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = RIPK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIPK4 MUTATED        0      0      0
  RIPK4 WILD-TYPE      9     10      8
D50V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        0      0      0      0
  RIPK4 WILD-TYPE      7      7      7      6
D50V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIPK4 MUTATED        0      5      3
  RIPK4 WILD-TYPE    169    115    218
D50V3, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             5             115
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        0      5      3      0
  RIPK4 WILD-TYPE    222     76    165     42
D50V4, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             5              76
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        2      1      1      0
  RIPK4 WILD-TYPE     50     61     67     74
D50V5, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              61
  CLUS_3             1              67
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIPK4 MUTATED        1      3      0
  RIPK4 WILD-TYPE     66    128     58
D50V6, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3             128
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIPK4 MUTATED        0      5      2      0      1
  RIPK4 WILD-TYPE    132    104    107    133     29
D50V7, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             5             104
  CLUS_3             2             107
  CLUS_4             0             133
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIPK4 MUTATED        0      4      1      0      2      1      0
  RIPK4 WILD-TYPE    134     67     35     66     89     40     74
D50V8, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             4              67
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             2              89
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        1      4      2      1
  RIPK4 WILD-TYPE    135    103    181     82
D50V9, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             4             103
  CLUS_3             2             181
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIPK4 MUTATED        1      2      5
  RIPK4 WILD-TYPE    221    182     98
D50V10, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2             182
  CLUS_3             5              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIPK4 MUTATED        4      1      3
  RIPK4 WILD-TYPE    180    161    156
D50V11, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             4             180
  CLUS_2             1             161
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIPK4 MUTATED        0      2      2      4
  RIPK4 WILD-TYPE     90    136    186     85
D50V12, multiclass
        clus
vv       RIPK4 MUTATED RIPK4 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = NEU2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        0      0      0
  NEU2 WILD-TYPE      9     10      8
D51V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      0      0      0
  NEU2 WILD-TYPE      7      7      7      6
D51V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        2      2      1
  NEU2 WILD-TYPE    167    118    220
D51V3, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            2            118
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        3      1      1      0
  NEU2 WILD-TYPE    219     80    167     42
D51V4, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      1      1      0
  NEU2 WILD-TYPE     52     61     67     74
D51V5, multiclass
[1] "Remove cluster labels:" "NEU2 MUTATED"          
clus
  NEU2 MUTATED NEU2 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-6393     TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-6397     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        1      1      0
  NEU2 WILD-TYPE     66    130     58
D51V6, multiclass
[1] "Remove cluster labels:" "NEU2 MUTATED"          
clus
  NEU2 MUTATED NEU2 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-6393     TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-6397     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"NEU2 WILD-TYPE" "NEU2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEU2 MUTATED        3      0      1      0      1
  NEU2 WILD-TYPE    129    109    108    133     29
D51V7, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            129
  CLUS_2            0            109
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEU2 MUTATED        3      1      0      0      1      0      0
  NEU2 WILD-TYPE    131     70     36     66     90     41     74
D51V8, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            3            131
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      1      2      2
  NEU2 WILD-TYPE    136    106    181     81
D51V9, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1            106
  CLUS_3            2            181
  CLUS_4            2             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        2      2      1
  NEU2 WILD-TYPE    220    182    102
D51V10, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            2            182
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEU2 MUTATED        1      1      3
  NEU2 WILD-TYPE    183    161    156
D51V11, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            3            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEU2 MUTATED        0      1      3      1
  NEU2 WILD-TYPE     90    137    185     88
D51V12, multiclass
        clus
vv       NEU2 MUTATED NEU2 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            3            185
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = PTPRH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRH MUTATED        0      0      0
  PTPRH WILD-TYPE      9     10      8
D52V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRH MUTATED        0      0      0      0
  PTPRH WILD-TYPE      7      7      7      6
D52V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRH MUTATED        3      3      2
  PTPRH WILD-TYPE    166    117    219
D52V3, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             3             166
  CLUS_2             3             117
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRH MUTATED        5      2      1      0
  PTPRH WILD-TYPE    217     79    167     42
D52V4, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             5             217
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRH MUTATED        0      3      1      2
  PTPRH WILD-TYPE     52     59     67     72
D52V5, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              59
  CLUS_3             1              67
  CLUS_4             2              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRH MUTATED        2      2      2
  PTPRH WILD-TYPE     65    129     56
D52V6, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             2              65
  CLUS_2             2             129
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRH MUTATED        1      5      0      2      0
  PTPRH WILD-TYPE    131    104    109    131     30
D52V7, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             1             131
  CLUS_2             5             104
  CLUS_3             0             109
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRH MUTATED        0      1      0      1      0      4      2
  PTPRH WILD-TYPE    134     70     36     65     91     37     72
D52V8, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             0             134
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             0              91
  CLUS_6             4              37
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRH MUTATED        0      4      4      0
  PTPRH WILD-TYPE    136    103    179     83
D52V9, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             0             136
  CLUS_2             4             103
  CLUS_3             4             179
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRH MUTATED        0      3      5
  PTPRH WILD-TYPE    222    181     98
D52V10, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             0             222
  CLUS_2             3             181
  CLUS_3             5              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRH MUTATED        2      1      5
  PTPRH WILD-TYPE    182    161    154
D52V11, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             2             182
  CLUS_2             1             161
  CLUS_3             5             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRH MUTATED        0      0      4      4
  PTPRH WILD-TYPE     90    138    184     85
D52V12, multiclass
        clus
vv       PTPRH MUTATED PTPRH WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0             138
  CLUS_3             4             184
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = MAPK15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        0      0      0
  MAPK15 WILD-TYPE      9     10      8
D53V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        0      0      0      0
  MAPK15 WILD-TYPE      7      7      7      6
D53V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        0      1      3
  MAPK15 WILD-TYPE    169    119    218
D53V3, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0              169
  CLUS_2              1              119
  CLUS_3              3              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        1      1      2      0
  MAPK15 WILD-TYPE    221     80    166     42
D53V4, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              1               80
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        1      2      0      0
  MAPK15 WILD-TYPE     51     60     68     74
D53V5, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               60
  CLUS_3              0               68
  CLUS_4              0               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        1      2      0
  MAPK15 WILD-TYPE     66    129     58
D53V6, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              2              129
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK15 MUTATED        1      1      1      1      0
  MAPK15 WILD-TYPE    131    108    108    132     30
D53V7, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              1              108
  CLUS_3              1              108
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAPK15 MUTATED        1      1      0      0      1      0      1
  MAPK15 WILD-TYPE    133     70     36     66     90     41     73
D53V8, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              1               70
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              1               90
  CLUS_6              0               41
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        2      0      1      1
  MAPK15 WILD-TYPE    134    107    182     82
D53V9, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              2              134
  CLUS_2              0              107
  CLUS_3              1              182
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        1      1      2
  MAPK15 WILD-TYPE    221    183    101
D53V10, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              1              183
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        2      1      1
  MAPK15 WILD-TYPE    182    161    158
D53V11, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              1              161
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        1      0      2      1
  MAPK15 WILD-TYPE     89    138    186     88
D53V12, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              0              138
  CLUS_3              2              186
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = TPX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        0      0      0
  TPX2 WILD-TYPE      9     10      8
D54V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        0      0      0      0
  TPX2 WILD-TYPE      7      7      7      6
D54V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        2      1      2
  TPX2 WILD-TYPE    167    119    219
D54V3, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        3      1      1      0
  TPX2 WILD-TYPE    219     80    167     42
D54V4, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        0      0      1      1
  TPX2 WILD-TYPE     52     62     67     73
D54V5, multiclass
[1] "Remove cluster labels:" "TPX2 MUTATED"          
clus
  TPX2 MUTATED TPX2 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        0      1      1
  TPX2 WILD-TYPE     67    130     57
D54V6, multiclass
[1] "Remove cluster labels:" "TPX2 MUTATED"          
clus
  TPX2 MUTATED TPX2 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"TPX2 WILD-TYPE" "TPX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPX2 MUTATED        2      1      0      2      0
  TPX2 WILD-TYPE    130    108    109    131     30
D54V7, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            0            109
  CLUS_4            2            131
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPX2 MUTATED        2      0      1      0      0      1      1
  TPX2 WILD-TYPE    132     71     35     66     91     40     73
D54V8, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        0      1      3      1
  TPX2 WILD-TYPE    136    106    180     82
D54V9, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1            106
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        0      4      1
  TPX2 WILD-TYPE    222    180    102
D54V10, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0            222
  CLUS_2            4            180
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPX2 MUTATED        0      2      3
  TPX2 WILD-TYPE    184    160    156
D54V11, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            2            160
  CLUS_3            3            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPX2 MUTATED        0      1      4      0
  TPX2 WILD-TYPE     90    137    184     89
D54V12, multiclass
        clus
vv       TPX2 MUTATED TPX2 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            4            184
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = SLC12A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        0      1      0
  SLC12A7 WILD-TYPE      9      9      8
D55V1, multiclass
[1] "Remove cluster labels:" "SLC12A7 MUTATED"       
clus
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5394 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        0      0      1      0
  SLC12A7 WILD-TYPE      7      7      6      6
D55V2, multiclass
[1] "Remove cluster labels:" "SLC12A7 MUTATED"       
clus
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5394 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC12A7 WILD-TYPE" "SLC12A7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        1      4      2
  SLC12A7 WILD-TYPE    168    116    219
D55V3, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1               168
  CLUS_2               4               116
  CLUS_3               2               219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        2      2      2      1
  SLC12A7 WILD-TYPE    220     79    166     41
D55V4, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               2                79
  CLUS_3               2               166
  CLUS_4               1                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        0      0      3      1
  SLC12A7 WILD-TYPE     52     62     65     73
D55V5, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               0                62
  CLUS_3               3                65
  CLUS_4               1                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        1      3      0
  SLC12A7 WILD-TYPE     66    128     58
D55V6, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1                66
  CLUS_2               3               128
  CLUS_3               0                58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        2      2      2      1      0
  SLC12A7 WILD-TYPE    130    107    107    132     30
D55V7, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               130
  CLUS_2               2               107
  CLUS_3               2               107
  CLUS_4               1               132
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC12A7 MUTATED        2      1      1      0      1      1      1
  SLC12A7 WILD-TYPE    132     70     35     66     90     40     73
D55V8, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               132
  CLUS_2               1                70
  CLUS_3               1                35
  CLUS_4               0                66
  CLUS_5               1                90
  CLUS_6               1                40
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        3      1      2      1
  SLC12A7 WILD-TYPE    133    106    181     82
D55V9, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3               133
  CLUS_2               1               106
  CLUS_3               2               181
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        3      2      2
  SLC12A7 WILD-TYPE    219    182    101
D55V10, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3               219
  CLUS_2               2               182
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        2      3      2
  SLC12A7 WILD-TYPE    182    159    157
D55V11, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2               182
  CLUS_2               3               159
  CLUS_3               2               157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        1      2      3      1
  SLC12A7 WILD-TYPE     89    136    185     88
D55V12, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               2               136
  CLUS_3               3               185
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = PLXNA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        0      1      0
  PLXNA3 WILD-TYPE      9      9      8
D56V1, multiclass
[1] "Remove cluster labels:" "PLXNA3 MUTATED"        
clus
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-DB-5270       TCGA-DB-5273 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        0      0      1      0
  PLXNA3 WILD-TYPE      7      7      6      6
D56V2, multiclass
[1] "Remove cluster labels:" "PLXNA3 MUTATED"        
clus
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               1               26 
      TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944       TCGA-CS-5390 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-CS-5394       TCGA-CS-5395       TCGA-DB-5270       TCGA-DB-5273 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5274       TCGA-DB-5275       TCGA-DB-5276       TCGA-DB-5277 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DB-5278       TCGA-DB-5280       TCGA-DB-5281       TCGA-DH-5140 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304       TCGA-E1-5311 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5322 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        1      4      4
  PLXNA3 WILD-TYPE    168    116    217
D56V3, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1              168
  CLUS_2              4              116
  CLUS_3              4              217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        2      3      4      0
  PLXNA3 WILD-TYPE    220     78    164     42
D56V4, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              3               78
  CLUS_3              4              164
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        1      2      3      0
  PLXNA3 WILD-TYPE     51     60     65     74
D56V5, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               60
  CLUS_3              3               65
  CLUS_4              0               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        1      5      0
  PLXNA3 WILD-TYPE     66    126     58
D56V6, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              5              126
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA3 MUTATED        2      3      3      0      1
  PLXNA3 WILD-TYPE    130    106    106    133     29
D56V7, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              3              106
  CLUS_3              3              106
  CLUS_4              0              133
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLXNA3 MUTATED        2      2      0      0      4      1      0
  PLXNA3 WILD-TYPE    132     69     36     66     87     40     74
D56V8, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              2               69
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              4               87
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        3      3      1      2
  PLXNA3 WILD-TYPE    133    104    182     81
D56V9, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              3              104
  CLUS_3              1              182
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        5      1      3
  PLXNA3 WILD-TYPE    217    183    100
D56V10, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              5              217
  CLUS_2              1              183
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        4      4      1
  PLXNA3 WILD-TYPE    180    158    158
D56V11, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              4              180
  CLUS_2              4              158
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        1      3      3      2
  PLXNA3 WILD-TYPE     89    135    185     87
D56V12, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              3              135
  CLUS_3              3              185
  CLUS_4              2               87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = RET MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        0      0      0
  RET WILD-TYPE      9     10      8
D57V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        0      0      0      0
  RET WILD-TYPE      7      7      7      6
D57V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        2      3      2
  RET WILD-TYPE    167    117    219
D57V3, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           167
  CLUS_2           3           117
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        2      3      2      0
  RET WILD-TYPE    220     78    166     42
D57V4, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           220
  CLUS_2           3            78
  CLUS_3           2           166
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        0      2      1      0
  RET WILD-TYPE     52     60     67     74
D57V5, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           0            52
  CLUS_2           2            60
  CLUS_3           1            67
  CLUS_4           0            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        0      3      0
  RET WILD-TYPE     67    128     58
D57V6, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           0            67
  CLUS_2           3           128
  CLUS_3           0            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RET MUTATED        1      3      0      3      0
  RET WILD-TYPE    131    106    109    130     30
D57V7, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           131
  CLUS_2           3           106
  CLUS_3           0           109
  CLUS_4           3           130
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RET MUTATED        1      2      1      1      0      1      1
  RET WILD-TYPE    133     69     35     65     91     40     73
D57V8, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           133
  CLUS_2           2            69
  CLUS_3           1            35
  CLUS_4           1            65
  CLUS_5           0            91
  CLUS_6           1            40
  CLUS_7           1            73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        2      1      4      0
  RET WILD-TYPE    134    106    179     83
D57V9, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           2           134
  CLUS_2           1           106
  CLUS_3           4           179
  CLUS_4           0            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        1      3      3
  RET WILD-TYPE    221    181    100
D57V10, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1           221
  CLUS_2           3           181
  CLUS_3           3           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RET MUTATED        3      0      4
  RET WILD-TYPE    181    162    155
D57V11, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           3           181
  CLUS_2           0           162
  CLUS_3           4           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RET MUTATED        1      0      4      2
  RET WILD-TYPE     89    138    184     87
D57V12, multiclass
        clus
vv       RET MUTATED RET WILD-TYPE
  CLUS_1           1            89
  CLUS_2           0           138
  CLUS_3           4           184
  CLUS_4           2            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = ZNF148 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        0      0      0
  ZNF148 WILD-TYPE      9     10      8
D58V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        0      0      0      0
  ZNF148 WILD-TYPE      7      7      7      6
D58V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        0      2      2
  ZNF148 WILD-TYPE    169    118    219
D58V3, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0              169
  CLUS_2              2              118
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        0      1      3      0
  ZNF148 WILD-TYPE    222     80    165     42
D58V4, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0              222
  CLUS_2              1               80
  CLUS_3              3              165
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        0      0      2      0
  ZNF148 WILD-TYPE     52     62     66     74
D58V5, multiclass
[1] "Remove cluster labels:" "ZNF148 MUTATED"        
clus
  ZNF148 MUTATED ZNF148 WILD-TYPE 
               2              254 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7290 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7300 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165       TCGA-DU-8166 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU       TCGA-DU-A5TW 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264       TCGA-FG-5962 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965       TCGA-FG-6688 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7636 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-7637       TCGA-FG-7638       TCGA-FG-7641       TCGA-FG-7643 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-8181       TCGA-FG-8182       TCGA-FG-8185       TCGA-FG-8186 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-8191 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-A4MT       TCGA-FG-A4MU       TCGA-FG-A4MW       TCGA-FG-A4MX 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-A4MY       TCGA-FG-A60J       TCGA-HT-7467       TCGA-HT-7468 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471       TCGA-HT-7472 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475       TCGA-HT-7476 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479       TCGA-HT-7480 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483       TCGA-HT-7485 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603       TCGA-HT-7604 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607       TCGA-HT-7608 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611       TCGA-HT-7616 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677       TCGA-HT-7680 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686       TCGA-HT-7687 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690       TCGA-HT-7691 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7695 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7857 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873       TCGA-HT-7874 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879       TCGA-HT-7880 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884       TCGA-HT-7902 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012       TCGA-HT-8013 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019       TCGA-HT-8104 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107       TCGA-HT-8109 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113       TCGA-HT-8114 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R5 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB       TCGA-HW-7486 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490       TCGA-HW-7491 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320       TCGA-HW-8321 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK       TCGA-HW-A5KM 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET       TCGA-P5-A5EU 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5EY 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1       TCGA-P5-A5F2 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-P5-A5F4       TCGA-P5-A5F6 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        1      1      0
  ZNF148 WILD-TYPE     66    130     58
D58V6, multiclass
[1] "Remove cluster labels:" "ZNF148 MUTATED"        
clus
  ZNF148 MUTATED ZNF148 WILD-TYPE 
               2              254 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7290 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7300 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165       TCGA-DU-8166 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU       TCGA-DU-A5TW 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264       TCGA-FG-5962 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965       TCGA-FG-6688 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7636 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-7637       TCGA-FG-7638       TCGA-FG-7641       TCGA-FG-7643 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-8181       TCGA-FG-8182       TCGA-FG-8185       TCGA-FG-8186 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-8191 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-A4MT       TCGA-FG-A4MU       TCGA-FG-A4MW       TCGA-FG-A4MX 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-FG-A4MY       TCGA-FG-A60J       TCGA-HT-7467       TCGA-HT-7468 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471       TCGA-HT-7472 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475       TCGA-HT-7476 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479       TCGA-HT-7480 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483       TCGA-HT-7485 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603       TCGA-HT-7604 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607       TCGA-HT-7608 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611       TCGA-HT-7616 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677       TCGA-HT-7680 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686       TCGA-HT-7687 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690       TCGA-HT-7691 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7695 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7857 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873       TCGA-HT-7874 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879       TCGA-HT-7880 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884       TCGA-HT-7902 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012       TCGA-HT-8013 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019       TCGA-HT-8104 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107       TCGA-HT-8109 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113       TCGA-HT-8114 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R5 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB       TCGA-HW-7486 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490       TCGA-HW-7491 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320       TCGA-HW-8321 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK       TCGA-HW-A5KM 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET       TCGA-P5-A5EU 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5EY 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1       TCGA-P5-A5F2 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
      TCGA-P5-A5F4       TCGA-P5-A5F6 
"ZNF148 WILD-TYPE" "ZNF148 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF148 MUTATED        0      1      2      1      0
  ZNF148 WILD-TYPE    132    108    107    132     30
D58V7, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0              132
  CLUS_2              1              108
  CLUS_3              2              107
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF148 MUTATED        0      0      0      0      2      1      1
  ZNF148 WILD-TYPE    134     71     36     66     89     40     73
D58V8, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0              134
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              2               89
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        1      2      1      0
  ZNF148 WILD-TYPE    135    105    182     83
D58V9, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              2              105
  CLUS_3              1              182
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        3      0      1
  ZNF148 WILD-TYPE    219    184    102
D58V10, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              0              184
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF148 MUTATED        1      1      2
  ZNF148 WILD-TYPE    183    161    157
D58V11, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              1              183
  CLUS_2              1              161
  CLUS_3              2              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF148 MUTATED        0      2      2      0
  ZNF148 WILD-TYPE     90    136    186     89
D58V12, multiclass
        clus
vv       ZNF148 MUTATED ZNF148 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              2              136
  CLUS_3              2              186
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = HDAC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC2 MUTATED        0      0      0
  HDAC2 WILD-TYPE      9     10      8
D59V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC2 MUTATED        0      0      0      0
  HDAC2 WILD-TYPE      7      7      7      6
D59V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC2 MUTATED        0      1      3
  HDAC2 WILD-TYPE    169    119    218
D59V3, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC2 MUTATED        0      1      3      0
  HDAC2 WILD-TYPE    222     80    165     42
D59V4, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             1              80
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC2 MUTATED        0      2      1      1
  HDAC2 WILD-TYPE     52     60     67     73
D59V5, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             2              60
  CLUS_3             1              67
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC2 MUTATED        0      2      2
  HDAC2 WILD-TYPE     67    129     56
D59V6, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2             129
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDAC2 MUTATED        0      1      2      1      0
  HDAC2 WILD-TYPE    132    108    107    132     30
D59V7, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3             2             107
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HDAC2 MUTATED        0      0      1      0      1      1      1
  HDAC2 WILD-TYPE    134     71     35     66     90     40     73
D59V8, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC2 MUTATED        0      1      1      2
  HDAC2 WILD-TYPE    136    106    182     81
D59V9, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             1             182
  CLUS_4             2              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC2 MUTATED        1      2      1
  HDAC2 WILD-TYPE    221    182    102
D59V10, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2             182
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC2 MUTATED        1      0      3
  HDAC2 WILD-TYPE    183    162    156
D59V11, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             0             162
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC2 MUTATED        0      0      4      0
  HDAC2 WILD-TYPE     90    138    184     89
D59V12, multiclass
        clus
vv       HDAC2 MUTATED HDAC2 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0             138
  CLUS_3             4             184
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = RBBP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        0      0      0
  RBBP6 WILD-TYPE      9     10      8
D60V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      0      0      0
  RBBP6 WILD-TYPE      7      7      7      6
D60V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        1      1      4
  RBBP6 WILD-TYPE    168    119    217
D60V3, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             1             119
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        1      1      4      0
  RBBP6 WILD-TYPE    221     80    164     42
D60V4, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             4             164
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      1      1      0
  RBBP6 WILD-TYPE     52     61     67     74
D60V5, multiclass
[1] "Remove cluster labels:" "RBBP6 MUTATED"         
clus
  RBBP6 MUTATED RBBP6 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        1      1      0
  RBBP6 WILD-TYPE     66    130     58
D60V6, multiclass
[1] "Remove cluster labels:" "RBBP6 MUTATED"         
clus
  RBBP6 MUTATED RBBP6 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"RBBP6 WILD-TYPE" "RBBP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBBP6 MUTATED        0      2      4      0      0
  RBBP6 WILD-TYPE    132    107    105    133     30
D60V7, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             2             107
  CLUS_3             4             105
  CLUS_4             0             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBBP6 MUTATED        0      0      0      0      4      2      0
  RBBP6 WILD-TYPE    134     71     36     66     87     39     74
D60V8, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             4              87
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      1      3      2
  RBBP6 WILD-TYPE    136    106    180     81
D60V9, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             3             180
  CLUS_4             2              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        3      0      3
  RBBP6 WILD-TYPE    219    184    100
D60V10, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0             184
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP6 MUTATED        0      4      2
  RBBP6 WILD-TYPE    184    158    157
D60V11, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             4             158
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP6 MUTATED        0      4      1      1
  RBBP6 WILD-TYPE     90    134    187     88
D60V12, multiclass
        clus
vv       RBBP6 MUTATED RBBP6 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             4             134
  CLUS_3             1             187
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = MED9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      0      0
  MED9 WILD-TYPE      9     10      8
D61V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        0      0      0      0
  MED9 WILD-TYPE      7      7      7      6
D61V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      2      1
  MED9 WILD-TYPE    169    118    220
D61V3, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0            169
  CLUS_2            2            118
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      0      1      1
  MED9 WILD-TYPE    221     81    167     41
D61V4, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            0             81
  CLUS_3            1            167
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      0      0      0
  MED9 WILD-TYPE     51     62     68     74
D61V5, multiclass
[1] "Remove cluster labels:" "MED9 MUTATED"          
clus
  MED9 MUTATED MED9 WILD-TYPE 
             1            255 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6393     TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6397     TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6402     TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6406     TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6542     TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7009     TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7013     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        1      0      0
  MED9 WILD-TYPE     66    131     58
D61V6, multiclass
[1] "Remove cluster labels:" "MED9 MUTATED"          
clus
  MED9 MUTATED MED9 WILD-TYPE 
             1            255 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6393     TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6397     TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6402     TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6406     TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-6542     TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7009     TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7013     TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7290     TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7300     TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-7306     TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-8162     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED9 MUTATED        1      0      0      1      1
  MED9 WILD-TYPE    131    109    109    132     29
D61V7, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            0            109
  CLUS_3            0            109
  CLUS_4            1            132
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED9 MUTATED        1      1      0      0      0      0      1
  MED9 WILD-TYPE    133     70     36     66     91     41     73
D61V8, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            0             41
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      0      2      0
  MED9 WILD-TYPE    135    107    181     83
D61V9, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            0            107
  CLUS_3            2            181
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        1      1      1
  MED9 WILD-TYPE    221    183    102
D61V10, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            1            183
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        2      0      1
  MED9 WILD-TYPE    182    162    158
D61V11, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2            182
  CLUS_2            0            162
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        0      0      2      1
  MED9 WILD-TYPE     90    138    186     88
D61V12, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            0            138
  CLUS_3            2            186
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DDX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        1      0      0
  DDX5 WILD-TYPE      8     10      8
D62V1, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5394 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      1      0      0
  DDX5 WILD-TYPE      7      6      7      6
D62V2, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4944     TCGA-CS-5390     TCGA-CS-5394 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        2      1      2
  DDX5 WILD-TYPE    167    119    219
D62V3, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        2      1      2      0
  DDX5 WILD-TYPE    220     80    166     42
D62V4, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        1      1      2      1
  DDX5 WILD-TYPE     51     61     66     73
D62V5, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             61
  CLUS_3            2             66
  CLUS_4            1             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        2      2      1
  DDX5 WILD-TYPE     65    129     57
D62V6, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2            129
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX5 MUTATED        2      1      2      0      0
  DDX5 WILD-TYPE    130    108    107    133     30
D62V7, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            2            107
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX5 MUTATED        2      0      1      0      1      1      0
  DDX5 WILD-TYPE    132     71     35     66     90     40     74
D62V8, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      2      3      0
  DDX5 WILD-TYPE    136    105    180     83
D62V9, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        1      3      1
  DDX5 WILD-TYPE    221    181    102
D62V10, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            3            181
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        0      1      4
  DDX5 WILD-TYPE    184    161    155
D62V11, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            1            161
  CLUS_3            4            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      1      4      0
  DDX5 WILD-TYPE     90    137    184     89
D62V12, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            4            184
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = ZC3H11A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        0      0      0
  ZC3H11A WILD-TYPE      9     10      8
D63V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        0      0      0      0
  ZC3H11A WILD-TYPE      7      7      7      6
D63V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        0      5      0
  ZC3H11A WILD-TYPE    169    115    221
D63V3, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0               169
  CLUS_2               5               115
  CLUS_3               0               221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        0      5      0      0
  ZC3H11A WILD-TYPE    222     76    168     42
D63V4, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0               222
  CLUS_2               5                76
  CLUS_3               0               168
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        1      0      1      0
  ZC3H11A WILD-TYPE     51     62     67     74
D63V5, multiclass
[1] "Remove cluster labels:" "ZC3H11A MUTATED"       
clus
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6393 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MX 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467        TCGA-HT-7468 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        0      2      0
  ZC3H11A WILD-TYPE     67    129     58
D63V6, multiclass
[1] "Remove cluster labels:" "ZC3H11A MUTATED"       
clus
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6393 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MX 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467        TCGA-HT-7468 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H11A MUTATED        0      5      0      0      0
  ZC3H11A WILD-TYPE    132    104    109    133     30
D63V7, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0               132
  CLUS_2               5               104
  CLUS_3               0               109
  CLUS_4               0               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H11A MUTATED        0      4      0      0      0      1      0
  ZC3H11A WILD-TYPE    134     67     36     66     91     40     74
D63V8, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0               134
  CLUS_2               4                67
  CLUS_3               0                36
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        1      3      1      0
  ZC3H11A WILD-TYPE    135    104    182     83
D63V9, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               1               135
  CLUS_2               3               104
  CLUS_3               1               182
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        1      0      4
  ZC3H11A WILD-TYPE    221    184     99
D63V10, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               1               221
  CLUS_2               0               184
  CLUS_3               4                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        3      0      2
  ZC3H11A WILD-TYPE    181    162    157
D63V11, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               3               181
  CLUS_2               0               162
  CLUS_3               2               157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        1      0      1      3
  ZC3H11A WILD-TYPE     89    138    187     86
D63V12, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               1               187
  CLUS_4               3                86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = SLC6A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        0      0      0
  SLC6A3 WILD-TYPE      9     10      8
D64V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        0      0      0      0
  SLC6A3 WILD-TYPE      7      7      7      6
D64V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        3      3      3
  SLC6A3 WILD-TYPE    166    117    218
D64V3, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              166
  CLUS_2              3              117
  CLUS_3              3              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        4      2      3      0
  SLC6A3 WILD-TYPE    218     79    165     42
D64V4, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              4              218
  CLUS_2              2               79
  CLUS_3              3              165
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        0      1      4      2
  SLC6A3 WILD-TYPE     52     61     64     72
D64V5, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              1               61
  CLUS_3              4               64
  CLUS_4              2               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        0      7      0
  SLC6A3 WILD-TYPE     67    124     58
D64V6, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              7              124
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A3 MUTATED        3      2      3      1      0
  SLC6A3 WILD-TYPE    129    107    106    132     30
D64V7, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              129
  CLUS_2              2              107
  CLUS_3              3              106
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC6A3 MUTATED        3      1      2      1      1      1      0
  SLC6A3 WILD-TYPE    131     70     34     65     90     40     74
D64V8, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              131
  CLUS_2              1               70
  CLUS_3              2               34
  CLUS_4              1               65
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        2      4      1      2
  SLC6A3 WILD-TYPE    134    103    182     81
D64V9, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              2              134
  CLUS_2              4              103
  CLUS_3              1              182
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        4      2      3
  SLC6A3 WILD-TYPE    218    182    100
D64V10, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              4              218
  CLUS_2              2              182
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        3      2      4
  SLC6A3 WILD-TYPE    181    160    155
D64V11, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              181
  CLUS_2              2              160
  CLUS_3              4              155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        3      1      4      1
  SLC6A3 WILD-TYPE     87    137    184     88
D64V12, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3               87
  CLUS_2              1              137
  CLUS_3              4              184
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = TPTE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        0      0      0
  TPTE2 WILD-TYPE      9     10      8
D65V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        0      0      0      0
  TPTE2 WILD-TYPE      7      7      7      6
D65V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        5      0      0
  TPTE2 WILD-TYPE    164    120    221
D65V3, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             5             164
  CLUS_2             0             120
  CLUS_3             0             221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        5      0      0      0
  TPTE2 WILD-TYPE    217     81    168     42
D65V4, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             5             217
  CLUS_2             0              81
  CLUS_3             0             168
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        0      1      1      0
  TPTE2 WILD-TYPE     52     61     67     74
D65V5, multiclass
[1] "Remove cluster labels:" "TPTE2 MUTATED"         
clus
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392      TCGA-DU-6393 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        0      2      0
  TPTE2 WILD-TYPE     67    129     58
D65V6, multiclass
[1] "Remove cluster labels:" "TPTE2 MUTATED"         
clus
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392      TCGA-DU-6393 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        3      0      0      1      1
  TPTE2 WILD-TYPE    129    109    109    132     29
D65V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3             129
  CLUS_2             0             109
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPTE2 MUTATED        4      0      0      1      0      0      0
  TPTE2 WILD-TYPE    130     71     36     65     91     41     74
D65V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4             130
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        1      1      2      1
  TPTE2 WILD-TYPE    135    106    181     82
D65V9, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1             106
  CLUS_3             2             181
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        3      1      1
  TPTE2 WILD-TYPE    219    183    102
D65V10, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        1      3      1
  TPTE2 WILD-TYPE    183    159    158
D65V11, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             3             159
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        1      2      2      0
  TPTE2 WILD-TYPE     89    136    186     89
D65V12, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = C4BPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        0      0      0
  C4BPA WILD-TYPE      9     10      8
D66V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        0      0      0      0
  C4BPA WILD-TYPE      7      7      7      6
D66V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        1      3      2
  C4BPA WILD-TYPE    168    117    219
D66V3, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             1             168
  CLUS_2             3             117
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        2      2      1      1
  C4BPA WILD-TYPE    220     79    167     41
D66V4, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        0      0      1      1
  C4BPA WILD-TYPE     52     62     67     73
D66V5, multiclass
[1] "Remove cluster labels:" "C4BPA MUTATED"         
clus
  C4BPA MUTATED C4BPA WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8163 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        0      1      1
  C4BPA WILD-TYPE     67    130     57
D66V6, multiclass
[1] "Remove cluster labels:" "C4BPA MUTATED"         
clus
  C4BPA MUTATED C4BPA WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8163 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C4BPA MUTATED        2      2      1      1      0
  C4BPA WILD-TYPE    130    107    108    132     30
D66V7, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             130
  CLUS_2             2             107
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C4BPA MUTATED        1      1      0      1      1      2      0
  C4BPA WILD-TYPE    133     70     36     65     90     39     74
D66V8, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        2      2      1      1
  C4BPA WILD-TYPE    134    105    182     82
D66V9, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             134
  CLUS_2             2             105
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        3      1      2
  C4BPA WILD-TYPE    219    183    101
D66V10, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1             183
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C4BPA MUTATED        2      2      2
  C4BPA WILD-TYPE    182    160    157
D66V11, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             2             182
  CLUS_2             2             160
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4BPA MUTATED        1      2      2      1
  C4BPA WILD-TYPE     89    136    186     88
D66V12, multiclass
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = MATK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MATK MUTATED        0      0      1
  MATK WILD-TYPE      9     10      7
D67V1, multiclass
[1] "Remove cluster labels:" "MATK MUTATED"          
clus
  MATK MUTATED MATK WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"MATK WILD-TYPE" "MATK WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATK MUTATED        0      1      0      0
  MATK WILD-TYPE      7      6      7      6
D67V2, multiclass
[1] "Remove cluster labels:" "MATK MUTATED"          
clus
  MATK MUTATED MATK WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" "MATK WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"MATK WILD-TYPE" "MATK WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MATK MUTATED        2      1      3
  MATK WILD-TYPE    167    119    218
D67V3, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATK MUTATED        2      1      3      0
  MATK WILD-TYPE    220     80    165     42
D67V4, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            3            165
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATK MUTATED        0      1      2      1
  MATK WILD-TYPE     52     61     66     73
D67V5, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            0             52
  CLUS_2            1             61
  CLUS_3            2             66
  CLUS_4            1             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MATK MUTATED        1      2      1
  MATK WILD-TYPE     66    129     57
D67V6, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            1             66
  CLUS_2            2            129
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MATK MUTATED        0      1      1      4      0
  MATK WILD-TYPE    132    108    108    129     30
D67V7, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            0            132
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            4            129
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MATK MUTATED        0      0      0      2      1      1      2
  MATK WILD-TYPE    134     71     36     64     90     40     72
D67V8, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            2             64
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            2             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATK MUTATED        0      2      3      1
  MATK WILD-TYPE    136    105    180     82
D67V9, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MATK MUTATED        2      3      1
  MATK WILD-TYPE    220    181    102
D67V10, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            2            220
  CLUS_2            3            181
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MATK MUTATED        1      2      3
  MATK WILD-TYPE    183    160    156
D67V11, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            1            183
  CLUS_2            2            160
  CLUS_3            3            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATK MUTATED        0      2      4      0
  MATK WILD-TYPE     90    136    184     89
D67V12, multiclass
        clus
vv       MATK MUTATED MATK WILD-TYPE
  CLUS_1            0             90
  CLUS_2            2            136
  CLUS_3            4            184
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = SMOC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        1      0      0
  SMOC1 WILD-TYPE      8     10      8
D68V1, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390      TCGA-CS-5394 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        1      0      0      0
  SMOC1 WILD-TYPE      6      7      7      6
D68V2, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390      TCGA-CS-5394 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        1      1      1
  SMOC1 WILD-TYPE    168    119    220
D68V3, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             1             119
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        2      0      1      0
  SMOC1 WILD-TYPE    220     81    167     42
D68V4, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             0              81
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        0      0      1      1
  SMOC1 WILD-TYPE     52     62     67     73
D68V5, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140      TCGA-DH-5141 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144      TCGA-DU-5847 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392      TCGA-DU-6393 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7476 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        0      1      1
  SMOC1 WILD-TYPE     67    130     57
D68V6, multiclass
[1] "Remove cluster labels:" "SMOC1 MUTATED"         
clus
  SMOC1 MUTATED SMOC1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-5390 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140      TCGA-DH-5141 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144      TCGA-DU-5847 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392      TCGA-DU-6393 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7476 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"SMOC1 WILD-TYPE" "SMOC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMOC1 MUTATED        1      1      0      1      0
  SMOC1 WILD-TYPE    131    108    109    132     30
D68V7, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMOC1 MUTATED        2      0      0      0      0      0      1
  SMOC1 WILD-TYPE    132     71     36     66     91     41     73
D68V8, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        2      0      1      0
  SMOC1 WILD-TYPE    134    107    182     83
D68V9, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             0             107
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        2      1      0
  SMOC1 WILD-TYPE    220    183    103
D68V10, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1             183
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMOC1 MUTATED        2      0      1
  SMOC1 WILD-TYPE    182    162    158
D68V11, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             0             162
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOC1 MUTATED        2      0      1      0
  SMOC1 WILD-TYPE     88    138    187     89
D68V12, multiclass
        clus
vv       SMOC1 MUTATED SMOC1 WILD-TYPE
  CLUS_1             2              88
  CLUS_2             0             138
  CLUS_3             1             187
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = NAP1L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        0      0      0
  NAP1L2 WILD-TYPE      9     10      8
D69V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        0      0      0      0
  NAP1L2 WILD-TYPE      7      7      7      6
D69V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      0      2
  NAP1L2 WILD-TYPE    167    120    219
D69V3, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              0              120
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        2      0      2      0
  NAP1L2 WILD-TYPE    220     81    166     42
D69V4, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              0               81
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      0      0      0
  NAP1L2 WILD-TYPE     51     62     68     74
D69V5, multiclass
[1] "Remove cluster labels:" "NAP1L2 MUTATED"        
clus
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               1              255 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6392 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6393       TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6397       TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6402       TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6406       TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6542       TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7009       TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7013       TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7290       TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-8166       TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-A5TR       TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-A5TW       TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-5962       TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-6688       TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-7634       TCGA-FG-7636       TCGA-FG-7637       TCGA-FG-7638 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-7641       TCGA-FG-7643       TCGA-FG-8181       TCGA-FG-8182 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-8185       TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-8189       TCGA-FG-8191       TCGA-FG-A4MT       TCGA-FG-A4MU 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A4MY       TCGA-FG-A60J 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7467       TCGA-HT-7468       TCGA-HT-7469       TCGA-HT-7470 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7471       TCGA-HT-7472       TCGA-HT-7473       TCGA-HT-7474 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7475       TCGA-HT-7476       TCGA-HT-7477       TCGA-HT-7478 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7479       TCGA-HT-7480       TCGA-HT-7481       TCGA-HT-7482 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7483       TCGA-HT-7485       TCGA-HT-7601       TCGA-HT-7602 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7603       TCGA-HT-7604       TCGA-HT-7605       TCGA-HT-7606 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7607       TCGA-HT-7608       TCGA-HT-7609       TCGA-HT-7610 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7611       TCGA-HT-7616       TCGA-HT-7620       TCGA-HT-7676 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7677       TCGA-HT-7680       TCGA-HT-7681       TCGA-HT-7684 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7686       TCGA-HT-7687       TCGA-HT-7688       TCGA-HT-7689 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7690       TCGA-HT-7691       TCGA-HT-7692       TCGA-HT-7693 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7694       TCGA-HT-7695       TCGA-HT-7854       TCGA-HT-7855 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7856       TCGA-HT-7857       TCGA-HT-7858       TCGA-HT-7860 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7873       TCGA-HT-7874       TCGA-HT-7875       TCGA-HT-7877 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7879       TCGA-HT-7880       TCGA-HT-7881       TCGA-HT-7882 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7884       TCGA-HT-7902       TCGA-HT-8010       TCGA-HT-8011 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-8012       TCGA-HT-8013       TCGA-HT-8015       TCGA-HT-8018 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-8019       TCGA-HT-8104       TCGA-HT-8105       TCGA-HT-8106 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-8107       TCGA-HT-8109       TCGA-HT-8110       TCGA-HT-8111 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-8113       TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-A5R5       TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HW-7486       TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HW-7491       TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HW-8321       TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HW-A5KM       TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-P5-A5EY       TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        0      1      0
  NAP1L2 WILD-TYPE     67    130     58
D69V6, multiclass
[1] "Remove cluster labels:" "NAP1L2 MUTATED"        
clus
  NAP1L2 MUTATED NAP1L2 WILD-TYPE 
               1              255 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6392 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6393       TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6397       TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6402       TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6406       TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-6542       TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7009       TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7013       TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7290       TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-8166       TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-A5TR       TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-DU-A5TW       TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-5962       TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-6688       TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-7634       TCGA-FG-7636       TCGA-FG-7637       TCGA-FG-7638 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-7641       TCGA-FG-7643       TCGA-FG-8181       TCGA-FG-8182 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-8185       TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-8189       TCGA-FG-8191       TCGA-FG-A4MT       TCGA-FG-A4MU 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A4MY       TCGA-FG-A60J 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7467       TCGA-HT-7468       TCGA-HT-7469       TCGA-HT-7470 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7471       TCGA-HT-7472       TCGA-HT-7473       TCGA-HT-7474 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7475       TCGA-HT-7476       TCGA-HT-7477       TCGA-HT-7478 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7479       TCGA-HT-7480       TCGA-HT-7481       TCGA-HT-7482 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7483       TCGA-HT-7485       TCGA-HT-7601       TCGA-HT-7602 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7603       TCGA-HT-7604       TCGA-HT-7605       TCGA-HT-7606 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7607       TCGA-HT-7608       TCGA-HT-7609       TCGA-HT-7610 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7611       TCGA-HT-7616       TCGA-HT-7620       TCGA-HT-7676 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7677       TCGA-HT-7680       TCGA-HT-7681       TCGA-HT-7684 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7686       TCGA-HT-7687       TCGA-HT-7688       TCGA-HT-7689 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7690       TCGA-HT-7691       TCGA-HT-7692       TCGA-HT-7693 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7694       TCGA-HT-7695       TCGA-HT-7854       TCGA-HT-7855 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7856       TCGA-HT-7857       TCGA-HT-7858       TCGA-HT-7860 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7873       TCGA-HT-7874       TCGA-HT-7875       TCGA-HT-7877 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7879       TCGA-HT-7880       TCGA-HT-7881       TCGA-HT-7882 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-7884       TCGA-HT-7902       TCGA-HT-8010       TCGA-HT-8011 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-8012       TCGA-HT-8013       TCGA-HT-8015       TCGA-HT-8018 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-8019       TCGA-HT-8104       TCGA-HT-8105       TCGA-HT-8106 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-8107       TCGA-HT-8109       TCGA-HT-8110       TCGA-HT-8111 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-8113       TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HT-A5R5       TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HW-7486       TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HW-7491       TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HW-8321       TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-HW-A5KM       TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-P5-A5EY       TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
      TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" "NAP1L2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAP1L2 MUTATED        2      0      2      0      0
  NAP1L2 WILD-TYPE    130    109    107    133     30
D69V7, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              0              109
  CLUS_3              2              107
  CLUS_4              0              133
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L2 MUTATED        2      0      2      0      0      0      0
  NAP1L2 WILD-TYPE    132     71     34     66     91     41     74
D69V8, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              0               71
  CLUS_3              2               34
  CLUS_4              0               66
  CLUS_5              0               91
  CLUS_6              0               41
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      1      2      0
  NAP1L2 WILD-TYPE    135    106    181     83
D69V9, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1              106
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      2      0
  NAP1L2 WILD-TYPE    220    182    103
D69V10, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              2              182
  CLUS_3              0              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L2 MUTATED        2      1      1
  NAP1L2 WILD-TYPE    182    161    158
D69V11, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              1              161
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L2 MUTATED        1      1      2      0
  NAP1L2 WILD-TYPE     89    137    186     89
D69V12, multiclass
        clus
vv       NAP1L2 MUTATED NAP1L2 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              1              137
  CLUS_3              2              186
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = CD99L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD99L2 MUTATED        0      0      0
  CD99L2 WILD-TYPE      9     10      8
D70V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD99L2 MUTATED        0      0      0      0
  CD99L2 WILD-TYPE      7      7      7      6
D70V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD99L2 MUTATED        0      1      3
  CD99L2 WILD-TYPE    169    119    218
D70V3, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              0              169
  CLUS_2              1              119
  CLUS_3              3              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD99L2 MUTATED        0      1      2      1
  CD99L2 WILD-TYPE    222     80    166     41
D70V4, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              0              222
  CLUS_2              1               80
  CLUS_3              2              166
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD99L2 MUTATED        0      0      1      2
  CD99L2 WILD-TYPE     52     62     67     72
D70V5, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              0               62
  CLUS_3              1               67
  CLUS_4              2               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD99L2 MUTATED        0      2      1
  CD99L2 WILD-TYPE     67    129     57
D70V6, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              2              129
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD99L2 MUTATED        0      1      2      1      0
  CD99L2 WILD-TYPE    132    108    107    132     30
D70V7, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              0              132
  CLUS_2              1              108
  CLUS_3              2              107
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD99L2 MUTATED        0      0      0      0      2      1      1
  CD99L2 WILD-TYPE    134     71     36     66     89     40     73
D70V8, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              0              134
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              2               89
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD99L2 MUTATED        0      1      1      2
  CD99L2 WILD-TYPE    136    106    182     81
D70V9, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              0              136
  CLUS_2              1              106
  CLUS_3              1              182
  CLUS_4              2               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD99L2 MUTATED        2      1      1
  CD99L2 WILD-TYPE    220    183    102
D70V10, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1              183
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD99L2 MUTATED        1      1      2
  CD99L2 WILD-TYPE    183    161    157
D70V11, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              1              183
  CLUS_2              1              161
  CLUS_3              2              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD99L2 MUTATED        0      1      3      0
  CD99L2 WILD-TYPE     90    137    185     89
D70V12, multiclass
        clus
vv       CD99L2 MUTATED CD99L2 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              1              137
  CLUS_3              3              185
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = SELE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SELE MUTATED        0      1      0
  SELE WILD-TYPE      9      9      8
D71V1, multiclass
[1] "Remove cluster labels:" "SELE MUTATED"          
clus
  SELE MUTATED SELE WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-E1-5311     TCGA-E1-5322 
"SELE WILD-TYPE" "SELE WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELE MUTATED        0      0      1      0
  SELE WILD-TYPE      7      7      6      6
D71V2, multiclass
[1] "Remove cluster labels:" "SELE MUTATED"          
clus
  SELE MUTATED SELE WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" "SELE WILD-TYPE" 
    TCGA-E1-5311     TCGA-E1-5322 
"SELE WILD-TYPE" "SELE WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SELE MUTATED        2      3      1
  SELE WILD-TYPE    167    117    220
D71V3, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            2            167
  CLUS_2            3            117
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELE MUTATED        2      3      1      0
  SELE WILD-TYPE    220     78    167     42
D71V4, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            2            220
  CLUS_2            3             78
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELE MUTATED        2      1      1      0
  SELE WILD-TYPE     50     61     67     74
D71V5, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             61
  CLUS_3            1             67
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SELE MUTATED        2      2      0
  SELE WILD-TYPE     65    129     58
D71V6, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2            129
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SELE MUTATED        1      3      1      1      0
  SELE WILD-TYPE    131    106    108    132     30
D71V7, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            1            131
  CLUS_2            3            106
  CLUS_3            1            108
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SELE MUTATED        1      1      0      1      1      2      0
  SELE WILD-TYPE    133     70     36     65     90     39     74
D71V8, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELE MUTATED        2      2      1      1
  SELE WILD-TYPE    134    105    182     82
D71V9, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            2            134
  CLUS_2            2            105
  CLUS_3            1            182
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SELE MUTATED        3      0      3
  SELE WILD-TYPE    219    184    100
D71V10, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            3            219
  CLUS_2            0            184
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SELE MUTATED        1      2      3
  SELE WILD-TYPE    183    160    156
D71V11, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            1            183
  CLUS_2            2            160
  CLUS_3            3            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELE MUTATED        1      2      2      1
  SELE WILD-TYPE     89    136    186     88
D71V12, multiclass
        clus
vv       SELE MUTATED SELE WILD-TYPE
  CLUS_1            1             89
  CLUS_2            2            136
  CLUS_3            2            186
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = TMEM184A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      0      0
  TMEM184A WILD-TYPE      9     10      8
D72V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      0      0      0
  TMEM184A WILD-TYPE      7      7      7      6
D72V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      1      2
  TMEM184A WILD-TYPE    169    119    219
D72V3, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                169
  CLUS_2                1                119
  CLUS_3                2                219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      1      2      0
  TMEM184A WILD-TYPE    222     80    166     42
D72V4, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                222
  CLUS_2                1                 80
  CLUS_3                2                166
  CLUS_4                0                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      1      1      0
  TMEM184A WILD-TYPE     52     61     67     74
D72V5, multiclass
[1] "Remove cluster labels:" "TMEM184A MUTATED"      
clus
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 2                254 
        TCGA-CS-4938         TCGA-CS-4942         TCGA-CS-4943 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-4944         TCGA-CS-5390         TCGA-CS-5393 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-5394         TCGA-CS-5396         TCGA-CS-5397 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-6186         TCGA-CS-6188         TCGA-CS-6665 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-6666         TCGA-CS-6668         TCGA-CS-6669 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-6670         TCGA-DB-5270         TCGA-DB-5273 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-5274         TCGA-DB-5275         TCGA-DB-5276 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-5277         TCGA-DB-5278         TCGA-DB-5279 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-5280         TCGA-DB-5281         TCGA-DB-A4X9 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A4XA         TCGA-DB-A4XB         TCGA-DB-A4XC 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A4XD         TCGA-DB-A4XE         TCGA-DB-A4XF 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A4XG         TCGA-DB-A4XH         TCGA-DH-5140 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DH-5141         TCGA-DH-5142         TCGA-DH-5143 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DH-5144         TCGA-DU-5847         TCGA-DU-5849 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5851         TCGA-DU-5852         TCGA-DU-5853 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5854         TCGA-DU-5855         TCGA-DU-5870 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5871         TCGA-DU-5872         TCGA-DU-5874 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6392         TCGA-DU-6393         TCGA-DU-6394 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6395         TCGA-DU-6396         TCGA-DU-6397 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6399         TCGA-DU-6400         TCGA-DU-6401 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6402         TCGA-DU-6403         TCGA-DU-6404 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6405         TCGA-DU-6406         TCGA-DU-6407 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6408         TCGA-DU-6410         TCGA-DU-6542 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7006         TCGA-DU-7007         TCGA-DU-7008 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7009         TCGA-DU-7010         TCGA-DU-7011 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7013         TCGA-DU-7015         TCGA-DU-7018 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7019         TCGA-DU-7290         TCGA-DU-7292 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7294         TCGA-DU-7298         TCGA-DU-7300 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7301         TCGA-DU-7302         TCGA-DU-7304 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7306         TCGA-DU-7309         TCGA-DU-8158 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8161         TCGA-DU-8162         TCGA-DU-8163 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8164         TCGA-DU-8165         TCGA-DU-8166 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8167         TCGA-DU-8168         TCGA-DU-A5TP 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A5TR         TCGA-DU-A5TS         TCGA-DU-A5TT 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A5TU         TCGA-DU-A5TW         TCGA-DU-A5TY 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5302         TCGA-E1-5303         TCGA-E1-5304 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5305         TCGA-E1-5307         TCGA-E1-5311 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5318         TCGA-E1-5319         TCGA-E1-5322 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-EZ-7264         TCGA-FG-5962         TCGA-FG-5963 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-5964         TCGA-FG-5965         TCGA-FG-6688 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-6689         TCGA-FG-6690         TCGA-FG-6691 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-7634         TCGA-FG-7636         TCGA-FG-7637 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-7638         TCGA-FG-7641         TCGA-FG-7643 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-8181         TCGA-FG-8182         TCGA-FG-8185 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-8186         TCGA-FG-8187         TCGA-FG-8188 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-8189         TCGA-FG-8191         TCGA-FG-A4MT 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-A4MU         TCGA-FG-A4MW         TCGA-FG-A4MX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-A4MY         TCGA-FG-A60J         TCGA-HT-7467 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7468         TCGA-HT-7469         TCGA-HT-7470 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7471         TCGA-HT-7472         TCGA-HT-7473 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7474         TCGA-HT-7475         TCGA-HT-7476 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7477         TCGA-HT-7478         TCGA-HT-7479 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7480         TCGA-HT-7481         TCGA-HT-7482 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7483         TCGA-HT-7485         TCGA-HT-7601 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7602         TCGA-HT-7603         TCGA-HT-7604 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7605         TCGA-HT-7606         TCGA-HT-7607 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7608         TCGA-HT-7609         TCGA-HT-7610 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7611         TCGA-HT-7616         TCGA-HT-7620 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7676         TCGA-HT-7677         TCGA-HT-7680 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7681         TCGA-HT-7684         TCGA-HT-7686 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7687         TCGA-HT-7688         TCGA-HT-7689 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7690         TCGA-HT-7691         TCGA-HT-7692 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7693         TCGA-HT-7694         TCGA-HT-7695 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7854         TCGA-HT-7855         TCGA-HT-7856 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7857         TCGA-HT-7858         TCGA-HT-7860 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7873         TCGA-HT-7874         TCGA-HT-7877 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7879         TCGA-HT-7880         TCGA-HT-7881 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7882         TCGA-HT-7884         TCGA-HT-7902 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8010         TCGA-HT-8011         TCGA-HT-8012 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8013         TCGA-HT-8015         TCGA-HT-8018 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8019         TCGA-HT-8104         TCGA-HT-8105 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8106         TCGA-HT-8107         TCGA-HT-8109 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8110         TCGA-HT-8111         TCGA-HT-8113 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8114         TCGA-HT-8558         TCGA-HT-8564 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-A4DV         TCGA-HT-A5R5         TCGA-HT-A5R7 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-A5R9         TCGA-HT-A5RB         TCGA-HW-7486 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HW-7487         TCGA-HW-7489         TCGA-HW-7490 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HW-7491         TCGA-HW-7495         TCGA-HW-8319 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HW-8320         TCGA-HW-8321         TCGA-HW-8322 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HW-A5KJ         TCGA-HW-A5KK         TCGA-HW-A5KM 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IK-7675         TCGA-IK-8125         TCGA-P5-A5ET 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5EU         TCGA-P5-A5EV         TCGA-P5-A5EW 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5EX         TCGA-P5-A5EY         TCGA-P5-A5EZ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5F0         TCGA-P5-A5F1         TCGA-P5-A5F2 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5F4         TCGA-P5-A5F6 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      2      0
  TMEM184A WILD-TYPE     67    129     58
D72V6, multiclass
[1] "Remove cluster labels:" "TMEM184A MUTATED"      
clus
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 2                254 
        TCGA-CS-4938         TCGA-CS-4942         TCGA-CS-4943 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-4944         TCGA-CS-5390         TCGA-CS-5393 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-5394         TCGA-CS-5396         TCGA-CS-5397 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-6186         TCGA-CS-6188         TCGA-CS-6665 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-6666         TCGA-CS-6668         TCGA-CS-6669 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-CS-6670         TCGA-DB-5270         TCGA-DB-5273 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-5274         TCGA-DB-5275         TCGA-DB-5276 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-5277         TCGA-DB-5278         TCGA-DB-5279 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-5280         TCGA-DB-5281         TCGA-DB-A4X9 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A4XA         TCGA-DB-A4XB         TCGA-DB-A4XC 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A4XD         TCGA-DB-A4XE         TCGA-DB-A4XF 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DB-A4XG         TCGA-DB-A4XH         TCGA-DH-5140 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DH-5141         TCGA-DH-5142         TCGA-DH-5143 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DH-5144         TCGA-DU-5847         TCGA-DU-5849 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5851         TCGA-DU-5852         TCGA-DU-5853 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5854         TCGA-DU-5855         TCGA-DU-5870 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-5871         TCGA-DU-5872         TCGA-DU-5874 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6392         TCGA-DU-6393         TCGA-DU-6394 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6395         TCGA-DU-6396         TCGA-DU-6397 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6399         TCGA-DU-6400         TCGA-DU-6401 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6402         TCGA-DU-6403         TCGA-DU-6404 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6405         TCGA-DU-6406         TCGA-DU-6407 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-6408         TCGA-DU-6410         TCGA-DU-6542 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7006         TCGA-DU-7007         TCGA-DU-7008 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7009         TCGA-DU-7010         TCGA-DU-7011 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7013         TCGA-DU-7015         TCGA-DU-7018 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7019         TCGA-DU-7290         TCGA-DU-7292 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7294         TCGA-DU-7298         TCGA-DU-7300 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7301         TCGA-DU-7302         TCGA-DU-7304 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-7306         TCGA-DU-7309         TCGA-DU-8158 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8161         TCGA-DU-8162         TCGA-DU-8163 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8164         TCGA-DU-8165         TCGA-DU-8166 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-8167         TCGA-DU-8168         TCGA-DU-A5TP 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A5TR         TCGA-DU-A5TS         TCGA-DU-A5TT 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-DU-A5TU         TCGA-DU-A5TW         TCGA-DU-A5TY 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5302         TCGA-E1-5303         TCGA-E1-5304 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5305         TCGA-E1-5307         TCGA-E1-5311 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-E1-5318         TCGA-E1-5319         TCGA-E1-5322 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-EZ-7264         TCGA-FG-5962         TCGA-FG-5963 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-5964         TCGA-FG-5965         TCGA-FG-6688 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-6689         TCGA-FG-6690         TCGA-FG-6691 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-7634         TCGA-FG-7636         TCGA-FG-7637 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-7638         TCGA-FG-7641         TCGA-FG-7643 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-8181         TCGA-FG-8182         TCGA-FG-8185 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-8186         TCGA-FG-8187         TCGA-FG-8188 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-8189         TCGA-FG-8191         TCGA-FG-A4MT 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-A4MU         TCGA-FG-A4MW         TCGA-FG-A4MX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FG-A4MY         TCGA-FG-A60J         TCGA-HT-7467 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7468         TCGA-HT-7469         TCGA-HT-7470 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7471         TCGA-HT-7472         TCGA-HT-7473 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7474         TCGA-HT-7475         TCGA-HT-7476 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7477         TCGA-HT-7478         TCGA-HT-7479 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7480         TCGA-HT-7481         TCGA-HT-7482 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7483         TCGA-HT-7485         TCGA-HT-7601 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7602         TCGA-HT-7603         TCGA-HT-7604 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7605         TCGA-HT-7606         TCGA-HT-7607 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7608         TCGA-HT-7609         TCGA-HT-7610 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7611         TCGA-HT-7616         TCGA-HT-7620 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7676         TCGA-HT-7677         TCGA-HT-7680 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7681         TCGA-HT-7684         TCGA-HT-7686 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7687         TCGA-HT-7688         TCGA-HT-7689 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7690         TCGA-HT-7691         TCGA-HT-7692 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7693         TCGA-HT-7694         TCGA-HT-7695 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7854         TCGA-HT-7855         TCGA-HT-7856 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7857         TCGA-HT-7858         TCGA-HT-7860 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7873         TCGA-HT-7874         TCGA-HT-7877 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7879         TCGA-HT-7880         TCGA-HT-7881 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-7882         TCGA-HT-7884         TCGA-HT-7902 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8010         TCGA-HT-8011         TCGA-HT-8012 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8013         TCGA-HT-8015         TCGA-HT-8018 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8019         TCGA-HT-8104         TCGA-HT-8105 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8106         TCGA-HT-8107         TCGA-HT-8109 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8110         TCGA-HT-8111         TCGA-HT-8113 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-8114         TCGA-HT-8558         TCGA-HT-8564 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-A4DV         TCGA-HT-A5R5         TCGA-HT-A5R7 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HT-A5R9         TCGA-HT-A5RB         TCGA-HW-7486 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HW-7487         TCGA-HW-7489         TCGA-HW-7490 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HW-7491         TCGA-HW-7495         TCGA-HW-8319 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HW-8320         TCGA-HW-8321         TCGA-HW-8322 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HW-A5KJ         TCGA-HW-A5KK         TCGA-HW-A5KM 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IK-7675         TCGA-IK-8125         TCGA-P5-A5ET 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5EU         TCGA-P5-A5EV         TCGA-P5-A5EW 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5EX         TCGA-P5-A5EY         TCGA-P5-A5EZ 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5F0         TCGA-P5-A5F1         TCGA-P5-A5F2 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-P5-A5F4         TCGA-P5-A5F6 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        0      1      0      2      0
  TMEM184A WILD-TYPE    132    108    109    131     30
D72V7, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                132
  CLUS_2                1                108
  CLUS_3                0                109
  CLUS_4                2                131
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM184A MUTATED        0      1      0      0      0      0      2
  TMEM184A WILD-TYPE    134     70     36     66     91     41     72
D72V8, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                134
  CLUS_2                1                 70
  CLUS_3                0                 36
  CLUS_4                0                 66
  CLUS_5                0                 91
  CLUS_6                0                 41
  CLUS_7                2                 72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        1      0      2      0
  TMEM184A WILD-TYPE    135    107    181     83
D72V9, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                135
  CLUS_2                0                107
  CLUS_3                2                181
  CLUS_4                0                 83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        0      2      1
  TMEM184A WILD-TYPE    222    182    102
D72V10, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                222
  CLUS_2                2                182
  CLUS_3                1                102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        1      0      2
  TMEM184A WILD-TYPE    183    162    157
D72V11, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                183
  CLUS_2                0                162
  CLUS_3                2                157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      0      2      1
  TMEM184A WILD-TYPE     90    138    186     88
D72V12, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                 90
  CLUS_2                0                138
  CLUS_3                2                186
  CLUS_4                1                 88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = FHOD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD1 MUTATED        0      0      0
  FHOD1 WILD-TYPE      9     10      8
D73V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD1 MUTATED        0      0      0      0
  FHOD1 WILD-TYPE      7      7      7      6
D73V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD1 MUTATED        1      2      3
  FHOD1 WILD-TYPE    168    118    218
D73V3, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD1 MUTATED        1      2      3      0
  FHOD1 WILD-TYPE    221     79    165     42
D73V4, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2              79
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD1 MUTATED        0      1      1      1
  FHOD1 WILD-TYPE     52     61     67     73
D73V5, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             1              67
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD1 MUTATED        0      2      1
  FHOD1 WILD-TYPE     67    129     57
D73V6, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHOD1 MUTATED        1      2      1      2      0
  FHOD1 WILD-TYPE    131    107    108    131     30
D73V7, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             2             107
  CLUS_3             1             108
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FHOD1 MUTATED        1      1      0      0      2      1      1
  FHOD1 WILD-TYPE    133     70     36     66     89     40     73
D73V8, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             2              89
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD1 MUTATED        1      2      2      1
  FHOD1 WILD-TYPE    135    105    181     82
D73V9, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2             105
  CLUS_3             2             181
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD1 MUTATED        2      2      2
  FHOD1 WILD-TYPE    220    182    101
D73V10, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2             182
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD1 MUTATED        1      2      3
  FHOD1 WILD-TYPE    183    160    156
D73V11, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             2             160
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD1 MUTATED        0      3      2      1
  FHOD1 WILD-TYPE     90    135    186     88
D73V12, multiclass
        clus
vv       FHOD1 MUTATED FHOD1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             3             135
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = HTR3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        0      0      0
  HTR3A WILD-TYPE      9     10      8
D74V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        0      0      0      0
  HTR3A WILD-TYPE      7      7      7      6
D74V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        1      2      4
  HTR3A WILD-TYPE    168    118    217
D74V3, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        1      3      3      0
  HTR3A WILD-TYPE    221     78    165     42
D74V4, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3              78
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        0      2      2      0
  HTR3A WILD-TYPE     52     60     66     74
D74V5, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             0              52
  CLUS_2             2              60
  CLUS_3             2              66
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        1      3      0
  HTR3A WILD-TYPE     66    128     58
D74V6, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3             128
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR3A MUTATED        1      3      2      1      0
  HTR3A WILD-TYPE    131    106    107    132     30
D74V7, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             131
  CLUS_2             3             106
  CLUS_3             2             107
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTR3A MUTATED        1      2      1      0      2      1      0
  HTR3A WILD-TYPE    133     69     35     66     89     40     74
D74V8, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             133
  CLUS_2             2              69
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             2              89
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        1      2      1      3
  HTR3A WILD-TYPE    135    105    182     80
D74V9, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2             105
  CLUS_3             1             182
  CLUS_4             3              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        3      1      3
  HTR3A WILD-TYPE    219    183    100
D74V10, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1             183
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR3A MUTATED        4      2      1
  HTR3A WILD-TYPE    180    160    158
D74V11, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             4             180
  CLUS_2             2             160
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR3A MUTATED        1      2      2      2
  HTR3A WILD-TYPE     89    136    186     87
D74V12, multiclass
        clus
vv       HTR3A MUTATED HTR3A WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             2              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      0      0
  RB1 WILD-TYPE      9     10      8
D75V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      0      0      0
  RB1 WILD-TYPE      7      7      7      6
D75V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        0      6      0
  RB1 WILD-TYPE    169    114    221
D75V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           169
  CLUS_2           6           114
  CLUS_3           0           221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      5      1      0
  RB1 WILD-TYPE    222     76    167     42
D75V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           222
  CLUS_2           5            76
  CLUS_3           1           167
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        1      2      1      0
  RB1 WILD-TYPE     51     60     67     74
D75V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            51
  CLUS_2           2            60
  CLUS_3           1            67
  CLUS_4           0            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      3      0
  RB1 WILD-TYPE     66    128     58
D75V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            66
  CLUS_2           3           128
  CLUS_3           0            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        0      4      1      0      1
  RB1 WILD-TYPE    132    105    108    133     29
D75V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           132
  CLUS_2           4           105
  CLUS_3           1           108
  CLUS_4           0           133
  CLUS_5           1            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RB1 MUTATED        0      3      0      1      1      1      0
  RB1 WILD-TYPE    134     68     36     65     90     40     74
D75V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0           134
  CLUS_2           3            68
  CLUS_3           0            36
  CLUS_4           1            65
  CLUS_5           1            90
  CLUS_6           1            40
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        3      1      1      1
  RB1 WILD-TYPE    133    106    182     82
D75V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           133
  CLUS_2           1           106
  CLUS_3           1           182
  CLUS_4           1            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      1      4
  RB1 WILD-TYPE    221    183     99
D75V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1           221
  CLUS_2           1           183
  CLUS_3           4            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        3      1      2
  RB1 WILD-TYPE    181    161    157
D75V11, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           181
  CLUS_2           1           161
  CLUS_3           2           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        0      1      2      3
  RB1 WILD-TYPE     90    137    186     86
D75V12, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            90
  CLUS_2           1           137
  CLUS_3           2           186
  CLUS_4           3            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = FGD6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD6 MUTATED        0      0      0
  FGD6 WILD-TYPE      9     10      8
D76V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD6 MUTATED        0      0      0      0
  FGD6 WILD-TYPE      7      7      7      6
D76V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD6 MUTATED        0      2      2
  FGD6 WILD-TYPE    169    118    219
D76V3, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            0            169
  CLUS_2            2            118
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD6 MUTATED        2      1      1      0
  FGD6 WILD-TYPE    220     80    167     42
D76V4, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD6 MUTATED        0      2      2      0
  FGD6 WILD-TYPE     52     60     66     74
D76V5, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             60
  CLUS_3            2             66
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD6 MUTATED        0      4      0
  FGD6 WILD-TYPE     67    127     58
D76V6, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            4            127
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGD6 MUTATED        1      2      1      0      0
  FGD6 WILD-TYPE    131    107    108    133     30
D76V7, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            2            107
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FGD6 MUTATED        2      0      0      0      1      1      0
  FGD6 WILD-TYPE    132     71     36     66     90     40     74
D76V8, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD6 MUTATED        2      1      0      1
  FGD6 WILD-TYPE    134    106    183     82
D76V9, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            2            134
  CLUS_2            1            106
  CLUS_3            0            183
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD6 MUTATED        3      0      1
  FGD6 WILD-TYPE    219    184    102
D76V10, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            0            184
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD6 MUTATED        2      1      1
  FGD6 WILD-TYPE    182    161    158
D76V11, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            2            182
  CLUS_2            1            161
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD6 MUTATED        1      1      2      0
  FGD6 WILD-TYPE     89    137    186     89
D76V12, multiclass
        clus
vv       FGD6 MUTATED FGD6 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            2            186
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = CD72 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD72 MUTATED        0      0      0
  CD72 WILD-TYPE      9     10      8
D77V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD72 MUTATED        0      0      0      0
  CD72 WILD-TYPE      7      7      7      6
D77V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD72 MUTATED        1      1      1
  CD72 WILD-TYPE    168    119    220
D77V3, multiclass
        clus
vv       CD72 MUTATED CD72 WILD-TYPE
  CLUS_1            1            168
  CLUS_2            1            119
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD72 MUTATED        2      1      0      0
  CD72 WILD-TYPE    220     80    168     42
D77V4, multiclass
        clus
vv       CD72 MUTATED CD72 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            0            168
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD72 MUTATED        0      0      0      0
  CD72 WILD-TYPE     52     62     68     74
D77V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD72 MUTATED        0      0      0
  CD72 WILD-TYPE     67    131     58
D77V6, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD72 MUTATED        1      2      0      0      0
  CD72 WILD-TYPE    131    107    109    133     30
D77V7, multiclass
        clus
vv       CD72 MUTATED CD72 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            2            107
  CLUS_3            0            109
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD72 MUTATED        1      1      0      0      0      1      0
  CD72 WILD-TYPE    133     70     36     66     91     40     74
D77V8, multiclass
        clus
vv       CD72 MUTATED CD72 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD72 MUTATED        1      2      0      0
  CD72 WILD-TYPE    135    105    183     83
D77V9, multiclass
        clus
vv       CD72 MUTATED CD72 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            2            105
  CLUS_3            0            183
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD72 MUTATED        1      0      2
  CD72 WILD-TYPE    221    184    101
D77V10, multiclass
        clus
vv       CD72 MUTATED CD72 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            0            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD72 MUTATED        3      0      0
  CD72 WILD-TYPE    181    162    159
D77V11, multiclass
        clus
vv       CD72 MUTATED CD72 WILD-TYPE
  CLUS_1            3            181
  CLUS_2            0            162
  CLUS_3            0            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD72 MUTATED        1      0      0      2
  CD72 WILD-TYPE     89    138    188     87
D77V12, multiclass
        clus
vv       CD72 MUTATED CD72 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            0            138
  CLUS_3            0            188
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = NKPD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NKPD1 MUTATED        0      0      0
  NKPD1 WILD-TYPE      9     10      8
D78V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKPD1 MUTATED        0      0      0      0
  NKPD1 WILD-TYPE      7      7      7      6
D78V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NKPD1 MUTATED        2      0      1
  NKPD1 WILD-TYPE    167    120    220
D78V3, multiclass
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  CLUS_1             2             167
  CLUS_2             0             120
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKPD1 MUTATED        2      0      1      0
  NKPD1 WILD-TYPE    220     81    167     42
D78V4, multiclass
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             0              81
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKPD1 MUTATED        0      1      0      1
  NKPD1 WILD-TYPE     52     61     68     73
D78V5, multiclass
[1] "Remove cluster labels:" "NKPD1 MUTATED"         
clus
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NKPD1 MUTATED        2      0      0
  NKPD1 WILD-TYPE     65    131     58
D78V6, multiclass
[1] "Remove cluster labels:" "NKPD1 MUTATED"         
clus
  NKPD1 MUTATED NKPD1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"NKPD1 WILD-TYPE" "NKPD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKPD1 MUTATED        1      1      0      1      0
  NKPD1 WILD-TYPE    131    108    109    132     30
D78V7, multiclass
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NKPD1 MUTATED        1      0      0      0      0      1      1
  NKPD1 WILD-TYPE    133     71     36     66     91     40     73
D78V8, multiclass
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKPD1 MUTATED        0      1      2      0
  NKPD1 WILD-TYPE    136    106    181     83
D78V9, multiclass
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             2             181
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NKPD1 MUTATED        1      1      1
  NKPD1 WILD-TYPE    221    183    102
D78V10, multiclass
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NKPD1 MUTATED        0      1      2
  NKPD1 WILD-TYPE    184    161    157
D78V11, multiclass
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             161
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKPD1 MUTATED        0      1      1      1
  NKPD1 WILD-TYPE     90    137    187     88
D78V12, multiclass
        clus
vv       NKPD1 MUTATED NKPD1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             1             187
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = MTMR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        0      0      0
  MTMR1 WILD-TYPE      9     10      8
D79V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        0      0      0      0
  MTMR1 WILD-TYPE      7      7      7      6
D79V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        0      3      1
  MTMR1 WILD-TYPE    169    117    220
D79V3, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             3             117
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        1      2      1      0
  MTMR1 WILD-TYPE    221     79    167     42
D79V4, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        0      0      1      0
  MTMR1 WILD-TYPE     52     62     67     74
D79V5, multiclass
[1] "Remove cluster labels:" "MTMR1 MUTATED"         
clus
  MTMR1 MUTATED MTMR1 WILD-TYPE 
              1             255 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-P5-A5EY      TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        0      1      0
  MTMR1 WILD-TYPE     67    130     58
D79V6, multiclass
[1] "Remove cluster labels:" "MTMR1 MUTATED"         
clus
  MTMR1 MUTATED MTMR1 WILD-TYPE 
              1             255 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-P5-A5EY      TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR1 MUTATED        1      1      1      1      0
  MTMR1 WILD-TYPE    131    108    108    132     30
D79V7, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTMR1 MUTATED        0      0      1      2      0      1      0
  MTMR1 WILD-TYPE    134     71     35     64     91     40     74
D79V8, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             2              64
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        0      1      3      0
  MTMR1 WILD-TYPE    136    106    180     83
D79V9, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             3             180
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        0      2      2
  MTMR1 WILD-TYPE    222    182    101
D79V10, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             2             182
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        0      2      2
  MTMR1 WILD-TYPE    184    160    157
D79V11, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             2             160
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        0      1      2      1
  MTMR1 WILD-TYPE     90    137    186     88
D79V12, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = GPR133 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        0      0      0
  GPR133 WILD-TYPE      9     10      8
D80V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        0      0      0      0
  GPR133 WILD-TYPE      7      7      7      6
D80V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        1      2      1
  GPR133 WILD-TYPE    168    118    220
D80V3, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              168
  CLUS_2              2              118
  CLUS_3              1              220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        1      2      1      0
  GPR133 WILD-TYPE    221     79    167     42
D80V4, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              2               79
  CLUS_3              1              167
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        0      0      2      0
  GPR133 WILD-TYPE     52     62     66     74
D80V5, multiclass
[1] "Remove cluster labels:" "GPR133 MUTATED"        
clus
  GPR133 MUTATED GPR133 WILD-TYPE 
               2              254 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7290 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7300 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165       TCGA-DU-8166 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU       TCGA-DU-A5TW 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264       TCGA-FG-5962 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965       TCGA-FG-6688 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7634 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-7636       TCGA-FG-7637       TCGA-FG-7638       TCGA-FG-7641 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-7643       TCGA-FG-8181       TCGA-FG-8182       TCGA-FG-8185 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-8191       TCGA-FG-A4MT       TCGA-FG-A4MU       TCGA-FG-A4MW 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-A4MX       TCGA-FG-A60J       TCGA-HT-7467       TCGA-HT-7468 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471       TCGA-HT-7472 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475       TCGA-HT-7476 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479       TCGA-HT-7480 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483       TCGA-HT-7485 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603       TCGA-HT-7604 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607       TCGA-HT-7608 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611       TCGA-HT-7616 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677       TCGA-HT-7680 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686       TCGA-HT-7687 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690       TCGA-HT-7691 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7695 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7857 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873       TCGA-HT-7874 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879       TCGA-HT-7880 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884       TCGA-HT-7902 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012       TCGA-HT-8013 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019       TCGA-HT-8104 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107       TCGA-HT-8109 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113       TCGA-HT-8114 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R5 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB       TCGA-HW-7486 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490       TCGA-HW-7491 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320       TCGA-HW-8321 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK       TCGA-HW-A5KM 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET       TCGA-P5-A5EU 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5EY 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1       TCGA-P5-A5F2 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-P5-A5F4       TCGA-P5-A5F6 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        0      2      0
  GPR133 WILD-TYPE     67    129     58
D80V6, multiclass
[1] "Remove cluster labels:" "GPR133 MUTATED"        
clus
  GPR133 MUTATED GPR133 WILD-TYPE 
               2              254 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7290 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7300 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165       TCGA-DU-8166 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU       TCGA-DU-A5TW 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264       TCGA-FG-5962 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965       TCGA-FG-6688 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7634 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-7636       TCGA-FG-7637       TCGA-FG-7638       TCGA-FG-7641 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-7643       TCGA-FG-8181       TCGA-FG-8182       TCGA-FG-8185 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-8191       TCGA-FG-A4MT       TCGA-FG-A4MU       TCGA-FG-A4MW 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-FG-A4MX       TCGA-FG-A60J       TCGA-HT-7467       TCGA-HT-7468 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471       TCGA-HT-7472 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475       TCGA-HT-7476 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479       TCGA-HT-7480 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483       TCGA-HT-7485 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603       TCGA-HT-7604 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607       TCGA-HT-7608 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611       TCGA-HT-7616 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677       TCGA-HT-7680 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686       TCGA-HT-7687 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690       TCGA-HT-7691 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7695 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7857 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873       TCGA-HT-7874 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879       TCGA-HT-7880 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884       TCGA-HT-7902 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012       TCGA-HT-8013 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019       TCGA-HT-8104 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107       TCGA-HT-8109 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113       TCGA-HT-8114 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R5 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB       TCGA-HW-7486 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490       TCGA-HW-7491 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320       TCGA-HW-8321 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK       TCGA-HW-A5KM 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET       TCGA-P5-A5EU 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5EY 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1       TCGA-P5-A5F2 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
      TCGA-P5-A5F4       TCGA-P5-A5F6 
"GPR133 WILD-TYPE" "GPR133 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR133 MUTATED        0      1      0      1      2
  GPR133 WILD-TYPE    132    108    109    132     28
D80V7, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              0              132
  CLUS_2              1              108
  CLUS_3              0              109
  CLUS_4              1              132
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR133 MUTATED        1      0      0      1      0      1      1
  GPR133 WILD-TYPE    133     71     36     65     91     40     73
D80V8, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              1               40
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        1      1      2      0
  GPR133 WILD-TYPE    135    106    181     83
D80V9, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              1              106
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        1      2      1
  GPR133 WILD-TYPE    221    182    102
D80V10, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              2              182
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR133 MUTATED        0      1      3
  GPR133 WILD-TYPE    184    161    156
D80V11, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              0              184
  CLUS_2              1              161
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR133 MUTATED        1      0      3      0
  GPR133 WILD-TYPE     89    138    185     89
D80V12, multiclass
        clus
vv       GPR133 MUTATED GPR133 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              0              138
  CLUS_3              3              185
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = CNOT4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT4 MUTATED        0      0      0
  CNOT4 WILD-TYPE      9     10      8
D81V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT4 MUTATED        0      0      0      0
  CNOT4 WILD-TYPE      7      7      7      6
D81V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT4 MUTATED        0      2      3
  CNOT4 WILD-TYPE    169    118    218
D81V3, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             2             118
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT4 MUTATED        2      1      1      1
  CNOT4 WILD-TYPE    220     80    167     41
D81V4, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1              80
  CLUS_3             1             167
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT4 MUTATED        1      0      1      1
  CNOT4 WILD-TYPE     51     62     67     73
D81V5, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              62
  CLUS_3             1              67
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT4 MUTATED        0      2      1
  CNOT4 WILD-TYPE     67    129     57
D81V6, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT4 MUTATED        0      3      1      1      0
  CNOT4 WILD-TYPE    132    106    108    132     30
D81V7, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             3             106
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNOT4 MUTATED        0      0      0      0      1      3      1
  CNOT4 WILD-TYPE    134     71     36     66     90     38     73
D81V8, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             3              38
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT4 MUTATED        0      3      1      1
  CNOT4 WILD-TYPE    136    104    182     82
D81V9, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             3             104
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT4 MUTATED        1      1      3
  CNOT4 WILD-TYPE    221    183    100
D81V10, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT4 MUTATED        3      0      2
  CNOT4 WILD-TYPE    181    162    157
D81V11, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             3             181
  CLUS_2             0             162
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT4 MUTATED        0      3      2      0
  CNOT4 WILD-TYPE     90    135    186     89
D81V12, multiclass
        clus
vv       CNOT4 MUTATED CNOT4 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             3             135
  CLUS_3             2             186
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = ZBTB20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        0      0      0
  ZBTB20 WILD-TYPE      9     10      8
D82V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        0      0      0      0
  ZBTB20 WILD-TYPE      7      7      7      6
D82V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        3      2     16
  ZBTB20 WILD-TYPE    166    118    205
D82V3, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              166
  CLUS_2              2              118
  CLUS_3             16              205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      2     16      0
  ZBTB20 WILD-TYPE    219     79    152     42
D82V4, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              2               79
  CLUS_3             16              152
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      1      3      4
  ZBTB20 WILD-TYPE     49     61     65     70
D82V5, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              1               61
  CLUS_3              3               65
  CLUS_4              4               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        4      4      3
  ZBTB20 WILD-TYPE     63    127     55
D82V6, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              4               63
  CLUS_2              4              127
  CLUS_3              3               55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        1      2      5     11      2
  ZBTB20 WILD-TYPE    131    107    104    122     28
D82V7, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              2              107
  CLUS_3              5              104
  CLUS_4             11              122
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB20 MUTATED        1      0      4      2      6      2      6
  ZBTB20 WILD-TYPE    133     71     32     64     85     39     68
D82V8, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              4               32
  CLUS_4              2               64
  CLUS_5              6               85
  CLUS_6              2               39
  CLUS_7              6               68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      2     12      4
  ZBTB20 WILD-TYPE    133    105    171     79
D82V9, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              2              105
  CLUS_3             12              171
  CLUS_4              4               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        5     14      2
  ZBTB20 WILD-TYPE    217    170    101
D82V10, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              5              217
  CLUS_2             14              170
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        3      7     11
  ZBTB20 WILD-TYPE    181    155    148
D82V11, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3              181
  CLUS_2              7              155
  CLUS_3             11              148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        1      5     14      1
  ZBTB20 WILD-TYPE     89    133    174     88
D82V12, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              5              133
  CLUS_3             14              174
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = ROBO3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        0      0      0
  ROBO3 WILD-TYPE      9     10      8
D83V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        0      0      0      0
  ROBO3 WILD-TYPE      7      7      7      6
D83V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        2      0      3
  ROBO3 WILD-TYPE    167    120    218
D83V3, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             167
  CLUS_2             0             120
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        3      0      2      0
  ROBO3 WILD-TYPE    219     81    166     42
D83V4, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0              81
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        2      0      0      0
  ROBO3 WILD-TYPE     50     62     68     74
D83V5, multiclass
[1] "Remove cluster labels:" "ROBO3 MUTATED"         
clus
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7467      TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7471      TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7479      TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7483      TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7603      TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7611      TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7677 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-P5-A5EY      TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        1      1      0
  ROBO3 WILD-TYPE     66    130     58
D83V6, multiclass
[1] "Remove cluster labels:" "ROBO3 MUTATED"         
clus
  ROBO3 MUTATED ROBO3 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7467      TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7471      TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7479      TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7483      TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7603      TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7611      TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7677 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-P5-A5EY      TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"ROBO3 WILD-TYPE" "ROBO3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO3 MUTATED        2      0      1      2      0
  ROBO3 WILD-TYPE    130    109    108    131     30
D83V7, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             0             109
  CLUS_3             1             108
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ROBO3 MUTATED        2      0      1      1      1      0      0
  ROBO3 WILD-TYPE    132     71     35     65     90     41     74
D83V8, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        1      0      2      2
  ROBO3 WILD-TYPE    135    107    181     81
D83V9, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             0             107
  CLUS_3             2             181
  CLUS_4             2              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        4      1      0
  ROBO3 WILD-TYPE    218    183    103
D83V10, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             4             218
  CLUS_2             1             183
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO3 MUTATED        2      2      1
  ROBO3 WILD-TYPE    182    160    158
D83V11, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             2             160
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO3 MUTATED        1      2      2      0
  ROBO3 WILD-TYPE     89    136    186     89
D83V12, multiclass
        clus
vv       ROBO3 MUTATED ROBO3 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = PDE8A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE8A MUTATED        0      0      0
  PDE8A WILD-TYPE      9     10      8
D84V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDE8A MUTATED        0      0      0      0
  PDE8A WILD-TYPE      7      7      7      6
D84V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE8A MUTATED        2      3      1
  PDE8A WILD-TYPE    167    117    220
D84V3, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             2             167
  CLUS_2             3             117
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDE8A MUTATED        2      3      1      0
  PDE8A WILD-TYPE    220     78    167     42
D84V4, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             2             220
  CLUS_2             3              78
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDE8A MUTATED        0      1      2      1
  PDE8A WILD-TYPE     52     61     66     73
D84V5, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             2              66
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE8A MUTATED        0      3      1
  PDE8A WILD-TYPE     67    128     57
D84V6, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             0              67
  CLUS_2             3             128
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDE8A MUTATED        1      3      1      1      0
  PDE8A WILD-TYPE    131    106    108    132     30
D84V7, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             1             131
  CLUS_2             3             106
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDE8A MUTATED        1      2      0      0      1      1      1
  PDE8A WILD-TYPE    133     69     36     66     90     40     73
D84V8, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             1             133
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDE8A MUTATED        2      2      1      1
  PDE8A WILD-TYPE    134    105    182     82
D84V9, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             2             134
  CLUS_2             2             105
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE8A MUTATED        2      1      3
  PDE8A WILD-TYPE    220    183    100
D84V10, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1             183
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE8A MUTATED        3      1      2
  PDE8A WILD-TYPE    181    161    157
D84V11, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             3             181
  CLUS_2             1             161
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDE8A MUTATED        1      1      2      2
  PDE8A WILD-TYPE     89    137    186     87
D84V12, multiclass
        clus
vv       PDE8A MUTATED PDE8A WILD-TYPE
  CLUS_1             1              89
  CLUS_2             1             137
  CLUS_3             2             186
  CLUS_4             2              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = EEF1D MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        0      0      0
  EEF1D WILD-TYPE      9     10      8
D85V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        0      0      0      0
  EEF1D WILD-TYPE      7      7      7      6
D85V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        1      1      1
  EEF1D WILD-TYPE    168    119    220
D85V3, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             1             168
  CLUS_2             1             119
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        2      1      0      0
  EEF1D WILD-TYPE    220     80    168     42
D85V4, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1              80
  CLUS_3             0             168
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        0      1      1      1
  EEF1D WILD-TYPE     52     61     67     73
D85V5, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             1              67
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        0      2      1
  EEF1D WILD-TYPE     67    129     57
D85V6, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF1D MUTATED        0      2      0      1      0
  EEF1D WILD-TYPE    132    107    109    132     30
D85V7, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             0             132
  CLUS_2             2             107
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EEF1D MUTATED        1      0      0      0      0      1      1
  EEF1D WILD-TYPE    133     71     36     66     91     40     73
D85V8, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             1             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        1      1      1      0
  EEF1D WILD-TYPE    135    106    182     83
D85V9, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1             106
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        1      1      1
  EEF1D WILD-TYPE    221    183    102
D85V10, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        1      0      2
  EEF1D WILD-TYPE    183    162    157
D85V11, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             1             183
  CLUS_2             0             162
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        1      0      2      0
  EEF1D WILD-TYPE     89    138    186     89
D85V12, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             1              89
  CLUS_2             0             138
  CLUS_3             2             186
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = MET MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        0      0      0
  MET WILD-TYPE      9     10      8
D86V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        0      0      0      0
  MET WILD-TYPE      7      7      7      6
D86V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        3      2      2
  MET WILD-TYPE    166    118    219
D86V3, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           3           166
  CLUS_2           2           118
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        3      2      2      0
  MET WILD-TYPE    219     79    166     42
D86V4, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           3           219
  CLUS_2           2            79
  CLUS_3           2           166
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        1      0      1      2
  MET WILD-TYPE     51     62     67     72
D86V5, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           1            51
  CLUS_2           0            62
  CLUS_3           1            67
  CLUS_4           2            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        1      2      1
  MET WILD-TYPE     66    129     57
D86V6, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           1            66
  CLUS_2           2           129
  CLUS_3           1            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MET MUTATED        2      2      2      1      0
  MET WILD-TYPE    130    107    107    132     30
D86V7, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           2           130
  CLUS_2           2           107
  CLUS_3           2           107
  CLUS_4           1           132
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MET MUTATED        2      1      0      1      2      1      0
  MET WILD-TYPE    132     70     36     65     89     40     74
D86V8, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           2           132
  CLUS_2           1            70
  CLUS_3           0            36
  CLUS_4           1            65
  CLUS_5           2            89
  CLUS_6           1            40
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        2      1      2      1
  MET WILD-TYPE    134    106    181     82
D86V9, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           2           134
  CLUS_2           1           106
  CLUS_3           2           181
  CLUS_4           1            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        3      1      2
  MET WILD-TYPE    219    183    101
D86V10, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           3           219
  CLUS_2           1           183
  CLUS_3           2           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        3      1      2
  MET WILD-TYPE    181    161    157
D86V11, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           3           181
  CLUS_2           1           161
  CLUS_3           2           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        1      1      3      1
  MET WILD-TYPE     89    137    185     88
D86V12, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           1            89
  CLUS_2           1           137
  CLUS_3           3           185
  CLUS_4           1            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = CUL4B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        0      0      0
  CUL4B WILD-TYPE      9     10      8
D87V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        0      0      0      0
  CUL4B WILD-TYPE      7      7      7      6
D87V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        1      3      6
  CUL4B WILD-TYPE    168    117    215
D87V3, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             168
  CLUS_2             3             117
  CLUS_3             6             215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        2      5      3      0
  CUL4B WILD-TYPE    220     76    165     42
D87V4, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             2             220
  CLUS_2             5              76
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        1      0      2      0
  CUL4B WILD-TYPE     51     62     66     74
D87V5, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              62
  CLUS_3             2              66
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        1      2      0
  CUL4B WILD-TYPE     66    129     58
D87V6, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2             129
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL4B MUTATED        1      6      2      1      0
  CUL4B WILD-TYPE    131    103    107    132     30
D87V7, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             131
  CLUS_2             6             103
  CLUS_3             2             107
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL4B MUTATED        1      3      1      0      1      3      1
  CUL4B WILD-TYPE    133     68     35     66     90     38     73
D87V8, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             133
  CLUS_2             3              68
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             3              38
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        1      5      3      1
  CUL4B WILD-TYPE    135    102    180     82
D87V9, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             135
  CLUS_2             5             102
  CLUS_3             3             180
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        1      3      6
  CUL4B WILD-TYPE    221    181     97
D87V10, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3             181
  CLUS_3             6              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CUL4B MUTATED        4      3      3
  CUL4B WILD-TYPE    180    159    156
D87V11, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             4             180
  CLUS_2             3             159
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL4B MUTATED        1      2      3      4
  CUL4B WILD-TYPE     89    136    185     85
D87V12, multiclass
        clus
vv       CUL4B MUTATED CUL4B WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             3             185
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = SNX31 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX31 MUTATED        0      0      0
  SNX31 WILD-TYPE      9     10      8
D88V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX31 MUTATED        0      0      0      0
  SNX31 WILD-TYPE      7      7      7      6
D88V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX31 MUTATED        0      2      2
  SNX31 WILD-TYPE    169    118    219
D88V3, multiclass
        clus
vv       SNX31 MUTATED SNX31 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             2             118
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX31 MUTATED        1      2      1      0
  SNX31 WILD-TYPE    221     79    167     42
D88V4, multiclass
        clus
vv       SNX31 MUTATED SNX31 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX31 MUTATED        1      0      1      0
  SNX31 WILD-TYPE     51     62     67     74
D88V5, multiclass
[1] "Remove cluster labels:" "SNX31 MUTATED"         
clus
  SNX31 MUTATED SNX31 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DH-5140      TCGA-DH-5141 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144      TCGA-DU-5847 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393      TCGA-DU-6394 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397      TCGA-DU-6399 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402      TCGA-DU-6403 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406      TCGA-DU-6407 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542      TCGA-DU-7006 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009      TCGA-DU-7010 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX31 MUTATED        1      1      0
  SNX31 WILD-TYPE     66    130     58
D88V6, multiclass
[1] "Remove cluster labels:" "SNX31 MUTATED"         
clus
  SNX31 MUTATED SNX31 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DH-5140      TCGA-DH-5141 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144      TCGA-DU-5847 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393      TCGA-DU-6394 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397      TCGA-DU-6399 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402      TCGA-DU-6403 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406      TCGA-DU-6407 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542      TCGA-DU-7006 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009      TCGA-DU-7010 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"SNX31 WILD-TYPE" "SNX31 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNX31 MUTATED        1      2      0      1      0
  SNX31 WILD-TYPE    131    107    109    132     30
D88V7, multiclass
        clus
vv       SNX31 MUTATED SNX31 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             2             107
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNX31 MUTATED        1      1      0      0      1      1      0
  SNX31 WILD-TYPE    133     70     36     66     90     40     74
D88V8, multiclass
        clus
vv       SNX31 MUTATED SNX31 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX31 MUTATED        1      2      1      0
  SNX31 WILD-TYPE    135    105    182     83
D88V9, multiclass
        clus
vv       SNX31 MUTATED SNX31 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2             105
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX31 MUTATED        1      1      2
  SNX31 WILD-TYPE    221    183    101
D88V10, multiclass
        clus
vv       SNX31 MUTATED SNX31 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX31 MUTATED        1      0      2
  SNX31 WILD-TYPE    183    162    157
D88V11, multiclass
        clus
vv       SNX31 MUTATED SNX31 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             0             162
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX31 MUTATED        0      0      2      1
  SNX31 WILD-TYPE     90    138    186     88
D88V12, multiclass
        clus
vv       SNX31 MUTATED SNX31 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0             138
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = PHF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        0      1      1
  PHF3 WILD-TYPE      9      9      7
D89V1, multiclass
[1] "Remove cluster labels:" "PHF3 MUTATED"          
clus
  PHF3 MUTATED PHF3 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311     TCGA-E1-5318 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-E1-5322 
"PHF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        1      1      0      0
  PHF3 WILD-TYPE      6      6      7      6
D89V2, multiclass
[1] "Remove cluster labels:" "PHF3 MUTATED"          
clus
  PHF3 MUTATED PHF3 WILD-TYPE 
             2             25 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5311     TCGA-E1-5318 
"PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" "PHF3 WILD-TYPE" 
    TCGA-E1-5322 
"PHF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        0      5      3
  PHF3 WILD-TYPE    169    115    218
D89V3, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            0            169
  CLUS_2            5            115
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        3      2      2      1
  PHF3 WILD-TYPE    219     79    166     41
D89V4, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            2             79
  CLUS_3            2            166
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        1      1      1      0
  PHF3 WILD-TYPE     51     61     67     74
D89V5, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             61
  CLUS_3            1             67
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        1      1      1
  PHF3 WILD-TYPE     66    130     57
D89V6, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            1            130
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF3 MUTATED        2      3      2      0      1
  PHF3 WILD-TYPE    130    106    107    133     29
D89V7, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            3            106
  CLUS_3            2            107
  CLUS_4            0            133
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF3 MUTATED        2      1      0      1      2      2      0
  PHF3 WILD-TYPE    132     70     36     65     89     39     74
D89V8, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            2             89
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        5      2      1      0
  PHF3 WILD-TYPE    131    105    182     83
D89V9, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            5            131
  CLUS_2            2            105
  CLUS_3            1            182
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        4      1      3
  PHF3 WILD-TYPE    218    183    100
D89V10, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            4            218
  CLUS_2            1            183
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        4      1      2
  PHF3 WILD-TYPE    180    161    157
D89V11, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            4            180
  CLUS_2            1            161
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        1      2      2      2
  PHF3 WILD-TYPE     89    136    186     87
D89V12, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            2            136
  CLUS_3            2            186
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = G6PC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        0      0      0
  G6PC WILD-TYPE      9     10      8
D90V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        0      0      0      0
  G6PC WILD-TYPE      7      7      7      6
D90V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      3      2
  G6PC WILD-TYPE    168    117    219
D90V3, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            168
  CLUS_2            3            117
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        1      3      2      0
  G6PC WILD-TYPE    221     78    166     42
D90V4, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            221
  CLUS_2            3             78
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        0      1      2      1
  G6PC WILD-TYPE     52     61     66     73
D90V5, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            0             52
  CLUS_2            1             61
  CLUS_3            2             66
  CLUS_4            1             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        0      3      1
  G6PC WILD-TYPE     67    128     57
D90V6, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            0             67
  CLUS_2            3            128
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  G6PC MUTATED        1      1      2      1      1
  G6PC WILD-TYPE    131    108    107    132     29
D90V7, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            131
  CLUS_2            1            108
  CLUS_3            2            107
  CLUS_4            1            132
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  G6PC MUTATED        0      1      1      1      1      2      0
  G6PC WILD-TYPE    134     70     35     65     90     39     74
D90V8, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            0            134
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            1             90
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        0      2      3      1
  G6PC WILD-TYPE    136    105    180     82
D90V9, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      2      3
  G6PC WILD-TYPE    221    182    100
D90V10, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            221
  CLUS_2            2            182
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G6PC MUTATED        1      1      4
  G6PC WILD-TYPE    183    161    155
D90V11, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            4            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G6PC MUTATED        1      1      2      2
  G6PC WILD-TYPE     89    137    186     87
D90V12, multiclass
        clus
vv       G6PC MUTATED G6PC WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            2            186
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = FOXQ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        0      0      0
  FOXQ1 WILD-TYPE      9     10      8
D91V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        0      0      0      0
  FOXQ1 WILD-TYPE      7      7      7      6
D91V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        2      2      0
  FOXQ1 WILD-TYPE    167    118    221
D91V3, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2             167
  CLUS_2             2             118
  CLUS_3             0             221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        2      1      0      1
  FOXQ1 WILD-TYPE    220     80    168     41
D91V4, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1              80
  CLUS_3             0             168
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        0      0      1      2
  FOXQ1 WILD-TYPE     52     62     67     72
D91V5, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             0              62
  CLUS_3             1              67
  CLUS_4             2              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        0      1      2
  FOXQ1 WILD-TYPE     67    130     56
D91V6, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             1             130
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        1      1      0      2      0
  FOXQ1 WILD-TYPE    131    108    109    131     30
D91V7, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             0             109
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FOXQ1 MUTATED        1      0      0      1      0      1      1
  FOXQ1 WILD-TYPE    133     71     36     65     91     40     73
D91V8, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        0      2      2      0
  FOXQ1 WILD-TYPE    136    105    181     83
D91V9, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             2             105
  CLUS_3             2             181
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        1      2      1
  FOXQ1 WILD-TYPE    221    182    102
D91V10, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2             182
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        0      1      3
  FOXQ1 WILD-TYPE    184    161    156
D91V11, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             161
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        1      0      3      0
  FOXQ1 WILD-TYPE     89    138    185     89
D91V12, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             0             138
  CLUS_3             3             185
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = AEBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED        0      0      0
  AEBP1 WILD-TYPE      9     10      8
D92V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AEBP1 MUTATED        0      0      0      0
  AEBP1 WILD-TYPE      7      7      7      6
D92V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED        0      1      3
  AEBP1 WILD-TYPE    169    119    218
D92V3, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AEBP1 MUTATED        1      0      2      1
  AEBP1 WILD-TYPE    221     81    166     41
D92V4, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             0              81
  CLUS_3             2             166
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AEBP1 MUTATED        0      1      0      3
  AEBP1 WILD-TYPE     52     61     68     71
D92V5, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             0              68
  CLUS_4             3              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED        1      1      2
  AEBP1 WILD-TYPE     66    130     56
D92V6, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             1             130
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AEBP1 MUTATED        0      1      0      3      0
  AEBP1 WILD-TYPE    132    108    109    130     30
D92V7, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3             0             109
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AEBP1 MUTATED        0      0      0      0      0      1      3
  AEBP1 WILD-TYPE    134     71     36     66     91     40     71
D92V8, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             3              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AEBP1 MUTATED        1      0      3      0
  AEBP1 WILD-TYPE    135    107    180     83
D92V9, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             0             107
  CLUS_3             3             180
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED        1      3      0
  AEBP1 WILD-TYPE    221    181    103
D92V10, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3             181
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AEBP1 MUTATED        0      1      3
  AEBP1 WILD-TYPE    184    161    156
D92V11, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             161
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AEBP1 MUTATED        1      0      3      0
  AEBP1 WILD-TYPE     89    138    185     89
D92V12, multiclass
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             0             138
  CLUS_3             3             185
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        0      1      0
  SETD2 WILD-TYPE      9      9      8
D93V1, multiclass
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        0      1      0      0
  SETD2 WILD-TYPE      7      6      7      6
D93V2, multiclass
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        2      6      2
  SETD2 WILD-TYPE    167    114    219
D93V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2             167
  CLUS_2             6             114
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        3      5      2      0
  SETD2 WILD-TYPE    219     76    166     42
D93V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             5              76
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        1      1      2      1
  SETD2 WILD-TYPE     51     61     66     73
D93V5, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             1              61
  CLUS_3             2              66
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        1      3      1
  SETD2 WILD-TYPE     66    128     57
D93V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3             128
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        0      5      2      0      3
  SETD2 WILD-TYPE    132    104    107    133     27
D93V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             5             104
  CLUS_3             2             107
  CLUS_4             0             133
  CLUS_5             3              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETD2 MUTATED        1      2      0      1      1      4      1
  SETD2 WILD-TYPE    133     69     36     65     90     37     73
D93V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             4              37
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        2      4      3      1
  SETD2 WILD-TYPE    134    103    180     82
D93V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             4             103
  CLUS_3             3             180
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        3      2      5
  SETD2 WILD-TYPE    219    182     98
D93V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             2             182
  CLUS_3             5              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        3      3      4
  SETD2 WILD-TYPE    181    159    155
D93V11, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3             181
  CLUS_2             3             159
  CLUS_3             4             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        1      2      3      4
  SETD2 WILD-TYPE     89    136    185     85
D93V12, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             3             185
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = DST MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED        0      0      0
  DST WILD-TYPE      9     10      8
D94V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED        0      0      0      0
  DST WILD-TYPE      7      7      7      6
D94V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED        1      3      7
  DST WILD-TYPE    168    117    214
D94V3, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           1           168
  CLUS_2           3           117
  CLUS_3           7           214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED        4      2      6      0
  DST WILD-TYPE    218     79    162     42
D94V4, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           4           218
  CLUS_2           2            79
  CLUS_3           6           162
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED        1      0      3      2
  DST WILD-TYPE     51     62     65     72
D94V5, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           1            51
  CLUS_2           0            62
  CLUS_3           3            65
  CLUS_4           2            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED        2      3      1
  DST WILD-TYPE     65    128     57
D94V6, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           2            65
  CLUS_2           3           128
  CLUS_3           1            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DST MUTATED        2      2      3      4      1
  DST WILD-TYPE    130    107    106    129     29
D94V7, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           2           130
  CLUS_2           2           107
  CLUS_3           3           106
  CLUS_4           4           129
  CLUS_5           1            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DST MUTATED        3      1      1      1      2      1      3
  DST WILD-TYPE    131     70     35     65     89     40     71
D94V8, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           3           131
  CLUS_2           1            70
  CLUS_3           1            35
  CLUS_4           1            65
  CLUS_5           2            89
  CLUS_6           1            40
  CLUS_7           3            71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED        2      5      4      1
  DST WILD-TYPE    134    102    179     82
D94V9, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           2           134
  CLUS_2           5           102
  CLUS_3           4           179
  CLUS_4           1            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED        5      5      2
  DST WILD-TYPE    217    179    101
D94V10, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           5           217
  CLUS_2           5           179
  CLUS_3           2           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED        3      3      6
  DST WILD-TYPE    181    159    153
D94V11, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           3           181
  CLUS_2           3           159
  CLUS_3           6           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED        3      1      7      1
  DST WILD-TYPE     87    137    181     88
D94V12, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           3            87
  CLUS_2           1           137
  CLUS_3           7           181
  CLUS_4           1            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = USP6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        0      0      1
  USP6 WILD-TYPE      9     10      7
D95V1, multiclass
[1] "Remove cluster labels:" "USP6 MUTATED"          
clus
  USP6 MUTATED USP6 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        0      0      0      1
  USP6 WILD-TYPE      7      7      7      5
D95V2, multiclass
[1] "Remove cluster labels:" "USP6 MUTATED"          
clus
  USP6 MUTATED USP6 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-DH-5144     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" "USP6 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"USP6 WILD-TYPE" "USP6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        1      3      2
  USP6 WILD-TYPE    168    117    219
D95V3, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            1            168
  CLUS_2            3            117
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        3      2      1      0
  USP6 WILD-TYPE    219     79    167     42
D95V4, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            2             79
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        1      0      1      1
  USP6 WILD-TYPE     51     62     67     73
D95V5, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            0             62
  CLUS_3            1             67
  CLUS_4            1             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        1      1      1
  USP6 WILD-TYPE     66    130     57
D95V6, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            1            130
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP6 MUTATED        2      3      0      1      0
  USP6 WILD-TYPE    130    106    109    132     30
D95V7, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            3            106
  CLUS_3            0            109
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP6 MUTATED        1      1      1      1      0      2      0
  USP6 WILD-TYPE    133     70     35     65     91     39     74
D95V8, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        2      2      1      1
  USP6 WILD-TYPE    134    105    182     82
D95V9, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            2            134
  CLUS_2            2            105
  CLUS_3            1            182
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        2      1      3
  USP6 WILD-TYPE    220    183    100
D95V10, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1            183
  CLUS_3            3            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP6 MUTATED        2      2      2
  USP6 WILD-TYPE    182    160    157
D95V11, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            2            182
  CLUS_2            2            160
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP6 MUTATED        1      2      1      2
  USP6 WILD-TYPE     89    136    187     87
D95V12, multiclass
        clus
vv       USP6 MUTATED USP6 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            2            136
  CLUS_3            1            187
  CLUS_4            2             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = TPM1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM1 MUTATED        0      0      0
  TPM1 WILD-TYPE      9     10      8
D96V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM1 MUTATED        0      0      0      0
  TPM1 WILD-TYPE      7      7      7      6
D96V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM1 MUTATED        0      2      3
  TPM1 WILD-TYPE    169    118    218
D96V3, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0            169
  CLUS_2            2            118
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM1 MUTATED        0      1      3      1
  TPM1 WILD-TYPE    222     80    165     41
D96V4, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0            222
  CLUS_2            1             80
  CLUS_3            3            165
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM1 MUTATED        0      0      2      2
  TPM1 WILD-TYPE     52     62     66     72
D96V5, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            0             62
  CLUS_3            2             66
  CLUS_4            2             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM1 MUTATED        0      2      2
  TPM1 WILD-TYPE     67    129     56
D96V6, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            2            129
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPM1 MUTATED        0      1      1      3      0
  TPM1 WILD-TYPE    132    108    108    130     30
D96V7, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0            132
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            3            130
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPM1 MUTATED        0      0      0      1      0      1      3
  TPM1 WILD-TYPE    134     71     36     65     91     40     71
D96V8, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            3             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM1 MUTATED        0      1      4      0
  TPM1 WILD-TYPE    136    106    179     83
D96V9, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1            106
  CLUS_3            4            179
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM1 MUTATED        0      4      1
  TPM1 WILD-TYPE    222    180    102
D96V10, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0            222
  CLUS_2            4            180
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM1 MUTATED        0      0      5
  TPM1 WILD-TYPE    184    162    154
D96V11, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            0            162
  CLUS_3            5            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM1 MUTATED        0      0      5      0
  TPM1 WILD-TYPE     90    138    183     89
D96V12, multiclass
        clus
vv       TPM1 MUTATED TPM1 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            0            138
  CLUS_3            5            183
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = GLYAT MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYAT MUTATED        1      0      0
  GLYAT WILD-TYPE      8     10      8
D97V1, multiclass
[1] "Remove cluster labels:" "GLYAT MUTATED"         
clus
  GLYAT MUTATED GLYAT WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4944      TCGA-CS-5390      TCGA-CS-5394 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYAT MUTATED        0      1      0      0
  GLYAT WILD-TYPE      7      6      7      6
D97V2, multiclass
[1] "Remove cluster labels:" "GLYAT MUTATED"         
clus
  GLYAT MUTATED GLYAT WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4944      TCGA-CS-5390      TCGA-CS-5394 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYAT MUTATED        2      1      1
  GLYAT WILD-TYPE    167    119    220
D97V3, multiclass
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  CLUS_1             2             167
  CLUS_2             1             119
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYAT MUTATED        2      1      1      0
  GLYAT WILD-TYPE    220     80    167     42
D97V4, multiclass
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  CLUS_1             2             220
  CLUS_2             1              80
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYAT MUTATED        0      1      1      0
  GLYAT WILD-TYPE     52     61     67     74
D97V5, multiclass
[1] "Remove cluster labels:" "GLYAT MUTATED"         
clus
  GLYAT MUTATED GLYAT WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4944      TCGA-CS-5390 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140      TCGA-DH-5141 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144      TCGA-DU-5847 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393      TCGA-DU-6394 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397      TCGA-DU-6399 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402      TCGA-DU-6403 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406      TCGA-DU-6407 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542      TCGA-DU-7006 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009      TCGA-DU-7010 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYAT MUTATED        0      2      0
  GLYAT WILD-TYPE     67    129     58
D97V6, multiclass
[1] "Remove cluster labels:" "GLYAT MUTATED"         
clus
  GLYAT MUTATED GLYAT WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4944      TCGA-CS-5390 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140      TCGA-DH-5141 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144      TCGA-DU-5847 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393      TCGA-DU-6394 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397      TCGA-DU-6399 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402      TCGA-DU-6403 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406      TCGA-DU-6407 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542      TCGA-DU-7006 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009      TCGA-DU-7010 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"GLYAT WILD-TYPE" "GLYAT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLYAT MUTATED        2      1      1      0      0
  GLYAT WILD-TYPE    130    108    108    133     30
D97V7, multiclass
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  CLUS_1             2             130
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             0             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLYAT MUTATED        2      0      0      0      1      1      0
  GLYAT WILD-TYPE    132     71     36     66     90     40     74
D97V8, multiclass
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  CLUS_1             2             132
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYAT MUTATED        1      2      0      1
  GLYAT WILD-TYPE    135    105    183     82
D97V9, multiclass
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2             105
  CLUS_3             0             183
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYAT MUTATED        3      0      1
  GLYAT WILD-TYPE    219    184    102
D97V10, multiclass
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0             184
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYAT MUTATED        1      2      1
  GLYAT WILD-TYPE    183    160    158
D97V11, multiclass
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  CLUS_1             1             183
  CLUS_2             2             160
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYAT MUTATED        1      2      1      0
  GLYAT WILD-TYPE     89    136    187     89
D97V12, multiclass
        clus
vv       GLYAT MUTATED GLYAT WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             1             187
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = DIAPH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        0      0      0
  DIAPH1 WILD-TYPE      9     10      8
D98V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH1 MUTATED        0      0      0      0
  DIAPH1 WILD-TYPE      7      7      7      6
D98V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        1      2      1
  DIAPH1 WILD-TYPE    168    118    220
D98V3, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              1              168
  CLUS_2              2              118
  CLUS_3              1              220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH1 MUTATED        2      1      0      1
  DIAPH1 WILD-TYPE    220     80    168     41
D98V4, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1               80
  CLUS_3              0              168
  CLUS_4              1               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH1 MUTATED        0      1      1      1
  DIAPH1 WILD-TYPE     52     61     67     73
D98V5, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              1               61
  CLUS_3              1               67
  CLUS_4              1               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        0      2      1
  DIAPH1 WILD-TYPE     67    129     57
D98V6, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              2              129
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIAPH1 MUTATED        2      1      0      1      0
  DIAPH1 WILD-TYPE    130    108    109    132     30
D98V7, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              1              108
  CLUS_3              0              109
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DIAPH1 MUTATED        1      0      0      1      0      2      0
  DIAPH1 WILD-TYPE    133     71     36     65     91     39     74
D98V8, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              2               39
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH1 MUTATED        0      3      1      0
  DIAPH1 WILD-TYPE    136    104    182     83
D98V9, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              0              136
  CLUS_2              3              104
  CLUS_3              1              182
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        2      1      1
  DIAPH1 WILD-TYPE    220    183    102
D98V10, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1              183
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        2      0      2
  DIAPH1 WILD-TYPE    182    162    157
D98V11, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              0              162
  CLUS_3              2              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH1 MUTATED        1      1      2      0
  DIAPH1 WILD-TYPE     89    137    186     89
D98V12, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              1               89
  CLUS_2              1              137
  CLUS_3              2              186
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = ZMYM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        0      0      0
  ZMYM2 WILD-TYPE      9     10      8
D99V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        0      0      0      0
  ZMYM2 WILD-TYPE      7      7      7      6
D99V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      2      4
  ZMYM2 WILD-TYPE    168    118    217
D99V3, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        2      2      3      0
  ZMYM2 WILD-TYPE    220     79    165     42
D99V4, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        0      1      3      1
  ZMYM2 WILD-TYPE     52     61     65     73
D99V5, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             3              65
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        0      4      1
  ZMYM2 WILD-TYPE     67    127     57
D99V6, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             4             127
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM2 MUTATED        2      2      0      3      0
  ZMYM2 WILD-TYPE    130    107    109    130     30
D99V7, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             2             107
  CLUS_3             0             109
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMYM2 MUTATED        2      1      0      0      0      1      3
  ZMYM2 WILD-TYPE    132     70     36     66     91     40     71
D99V8, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             3              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        0      3      4      0
  ZMYM2 WILD-TYPE    136    104    179     83
D99V9, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             3             104
  CLUS_3             4             179
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      4      2
  ZMYM2 WILD-TYPE    221    180    101
D99V10, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             4             180
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM2 MUTATED        1      2      4
  ZMYM2 WILD-TYPE    183    160    155
D99V11, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             2             160
  CLUS_3             4             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM2 MUTATED        0      1      5      1
  ZMYM2 WILD-TYPE     90    137    183     88
D99V12, multiclass
        clus
vv       ZMYM2 MUTATED ZMYM2 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             5             183
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = HCFC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCFC1 MUTATED        0      0      0
  HCFC1 WILD-TYPE      9     10      8
D100V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1 MUTATED        0      0      0      0
  HCFC1 WILD-TYPE      7      7      7      6
D100V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCFC1 MUTATED        3      2      2
  HCFC1 WILD-TYPE    166    118    219
D100V3, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             3             166
  CLUS_2             2             118
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1 MUTATED        3      2      1      1
  HCFC1 WILD-TYPE    219     79    167     41
D100V4, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1 MUTATED        0      1      1      1
  HCFC1 WILD-TYPE     52     61     67     73
D100V5, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             1              67
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCFC1 MUTATED        0      2      1
  HCFC1 WILD-TYPE     67    129     57
D100V6, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCFC1 MUTATED        2      3      0      1      1
  HCFC1 WILD-TYPE    130    106    109    132     29
D100V7, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             3             106
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HCFC1 MUTATED        2      1      0      0      1      2      1
  HCFC1 WILD-TYPE    132     70     36     66     90     39     73
D100V8, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             2              39
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1 MUTATED        3      3      1      0
  HCFC1 WILD-TYPE    133    104    182     83
D100V9, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             3             133
  CLUS_2             3             104
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCFC1 MUTATED        3      1      3
  HCFC1 WILD-TYPE    219    183    100
D100V10, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1             183
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCFC1 MUTATED        2      3      2
  HCFC1 WILD-TYPE    182    159    157
D100V11, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             3             159
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1 MUTATED        2      2      2      1
  HCFC1 WILD-TYPE     88    136    186     88
D100V12, multiclass
        clus
vv       HCFC1 MUTATED HCFC1 WILD-TYPE
  CLUS_1             2              88
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = MST1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST1 MUTATED        0      0      0
  MST1 WILD-TYPE      9     10      8
D101V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1 MUTATED        0      0      0      0
  MST1 WILD-TYPE      7      7      7      6
D101V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST1 MUTATED        0      2      2
  MST1 WILD-TYPE    169    118    219
D101V3, multiclass
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  CLUS_1            0            169
  CLUS_2            2            118
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1 MUTATED        1      2      1      0
  MST1 WILD-TYPE    221     79    167     42
D101V4, multiclass
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            2             79
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1 MUTATED        0      1      1      0
  MST1 WILD-TYPE     52     61     67     74
D101V5, multiclass
[1] "Remove cluster labels:" "MST1 MUTATED"          
clus
  MST1 MUTATED MST1 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467     TCGA-HT-7468 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST1 MUTATED        0      2      0
  MST1 WILD-TYPE     67    129     58
D101V6, multiclass
[1] "Remove cluster labels:" "MST1 MUTATED"          
clus
  MST1 MUTATED MST1 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467     TCGA-HT-7468 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MST1 MUTATED        1      2      1      0      0
  MST1 WILD-TYPE    131    107    108    133     30
D101V7, multiclass
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            2            107
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MST1 MUTATED        1      1      1      0      0      1      0
  MST1 WILD-TYPE    133     70     35     66     91     40     74
D101V8, multiclass
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1 MUTATED        1      2      1      0
  MST1 WILD-TYPE    135    105    182     83
D101V9, multiclass
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            2            105
  CLUS_3            1            182
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST1 MUTATED        1      1      2
  MST1 WILD-TYPE    221    183    101
D101V10, multiclass
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            1            183
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST1 MUTATED        1      2      1
  MST1 WILD-TYPE    183    160    158
D101V11, multiclass
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            2            160
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1 MUTATED        1      0      2      1
  MST1 WILD-TYPE     89    138    186     88
D101V12, multiclass
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            0            138
  CLUS_3            2            186
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(102) Variable = TNFSF14 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF14 MUTATED        0      0      0
  TNFSF14 WILD-TYPE      9     10      8
D102V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF14 MUTATED        0      0      0      0
  TNFSF14 WILD-TYPE      7      7      7      6
D102V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF14 MUTATED        0      3      2
  TNFSF14 WILD-TYPE    169    117    219
D102V3, multiclass
        clus
vv       TNFSF14 MUTATED TNFSF14 WILD-TYPE
  CLUS_1               0               169
  CLUS_2               3               117
  CLUS_3               2               219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF14 MUTATED        0      3      2      0
  TNFSF14 WILD-TYPE    222     78    166     42
D102V4, multiclass
        clus
vv       TNFSF14 MUTATED TNFSF14 WILD-TYPE
  CLUS_1               0               222
  CLUS_2               3                78
  CLUS_3               2               166
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF14 MUTATED        0      0      0      1
  TNFSF14 WILD-TYPE     52     62     68     73
D102V5, multiclass
[1] "Remove cluster labels:" "TNFSF14 MUTATED"       
clus
  TNFSF14 MUTATED TNFSF14 WILD-TYPE 
                1               255 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-5962        TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-7634        TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-7641        TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-8185        TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-8189        TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7471        TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7475        TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7479        TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7483        TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7603        TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7611        TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7677        TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7686        TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7880        TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-8109        TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-8114        TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HW-7491        TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-P5-A5EY        TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-P5-A5F2        TCGA-P5-A5F4        TCGA-P5-A5F6 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF14 MUTATED        0      0      1
  TNFSF14 WILD-TYPE     67    131     57
D102V6, multiclass
[1] "Remove cluster labels:" "TNFSF14 MUTATED"       
clus
  TNFSF14 MUTATED TNFSF14 WILD-TYPE 
                1               255 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-5962        TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-7634        TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-7641        TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-8185        TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-8189        TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7471        TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7475        TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7479        TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7483        TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7603        TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7607        TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7611        TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7677        TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7686        TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7880        TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-8109        TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-8114        TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HW-7491        TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-P5-A5EY        TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
       TCGA-P5-A5F2        TCGA-P5-A5F4        TCGA-P5-A5F6 
"TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" "TNFSF14 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF14 MUTATED        0      3      2      0      0
  TNFSF14 WILD-TYPE    132    106    107    133     30
D102V7, multiclass
        clus
vv       TNFSF14 MUTATED TNFSF14 WILD-TYPE
  CLUS_1               0               132
  CLUS_2               3               106
  CLUS_3               2               107
  CLUS_4               0               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNFSF14 MUTATED        0      3      1      0      1      0      0
  TNFSF14 WILD-TYPE    134     68     35     66     90     41     74
D102V8, multiclass
        clus
vv       TNFSF14 MUTATED TNFSF14 WILD-TYPE
  CLUS_1               0               134
  CLUS_2               3                68
  CLUS_3               1                35
  CLUS_4               0                66
  CLUS_5               1                90
  CLUS_6               0                41
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF14 MUTATED        1      2      2      0
  TNFSF14 WILD-TYPE    135    105    181     83
D102V9, multiclass
        clus
vv       TNFSF14 MUTATED TNFSF14 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               2               105
  CLUS_3               2               181
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF14 MUTATED        1      2      2
  TNFSF14 WILD-TYPE    221    182    101
D102V10, multiclass
        clus
vv       TNFSF14 MUTATED TNFSF14 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               2               182
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF14 MUTATED        3      0      2
  TNFSF14 WILD-TYPE    181    162    157
D102V11, multiclass
        clus
vv       TNFSF14 MUTATED TNFSF14 WILD-TYPE
  CLUS_1               3               181
  CLUS_2               0               162
  CLUS_3               2               157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF14 MUTATED        1      0      1      3
  TNFSF14 WILD-TYPE     89    138    187     86
D102V12, multiclass
        clus
vv       TNFSF14 MUTATED TNFSF14 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               1               187
  CLUS_4               3                86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(103) Variable = DNAH7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        0      0      0
  DNAH7 WILD-TYPE      9     10      8
D103V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        0      0      0      0
  DNAH7 WILD-TYPE      7      7      7      6
D103V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        3      3      4
  DNAH7 WILD-TYPE    166    117    217
D103V3, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             3             166
  CLUS_2             3             117
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        4      3      3      0
  DNAH7 WILD-TYPE    218     78    165     42
D103V4, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             4             218
  CLUS_2             3              78
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        0      2      2      0
  DNAH7 WILD-TYPE     52     60     66     74
D103V5, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             2              60
  CLUS_3             2              66
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        0      4      0
  DNAH7 WILD-TYPE     67    127     58
D103V6, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             4             127
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        2      4      1      2      1
  DNAH7 WILD-TYPE    130    105    108    131     29
D103V7, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             4             105
  CLUS_3             1             108
  CLUS_4             2             131
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH7 MUTATED        3      2      0      0      3      2      0
  DNAH7 WILD-TYPE    131     69     36     66     88     39     74
D103V8, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             3             131
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             3              88
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        2      3      2      2
  DNAH7 WILD-TYPE    134    104    181     81
D103V9, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             3             104
  CLUS_3             2             181
  CLUS_4             2              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        3      3      3
  DNAH7 WILD-TYPE    219    181    100
D103V10, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             3             181
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED        2      3      4
  DNAH7 WILD-TYPE    182    159    155
D103V11, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             3             159
  CLUS_3             4             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        0      3      4      2
  DNAH7 WILD-TYPE     90    135    184     87
D103V12, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             3             135
  CLUS_3             4             184
  CLUS_4             2              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(104) Variable = ENGASE MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        0      0      0
  ENGASE WILD-TYPE      9     10      8
D104V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        0      0      0      0
  ENGASE WILD-TYPE      7      7      7      6
D104V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        2      1      2
  ENGASE WILD-TYPE    167    119    219
D104V3, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              2              167
  CLUS_2              1              119
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        3      1      1      0
  ENGASE WILD-TYPE    219     80    167     42
D104V4, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              3              219
  CLUS_2              1               80
  CLUS_3              1              167
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        0      0      1      1
  ENGASE WILD-TYPE     52     62     67     73
D104V5, multiclass
[1] "Remove cluster labels:" "ENGASE MUTATED"        
clus
  ENGASE MUTATED ENGASE WILD-TYPE 
               2              254 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7290 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7300 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165       TCGA-DU-8166 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU       TCGA-DU-A5TW 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-5322       TCGA-EZ-7264       TCGA-FG-5962       TCGA-FG-5963 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-5964       TCGA-FG-5965       TCGA-FG-6688       TCGA-FG-6689 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7634       TCGA-FG-7636 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-7637       TCGA-FG-7638       TCGA-FG-7641       TCGA-FG-7643 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-8181       TCGA-FG-8182       TCGA-FG-8185       TCGA-FG-8186 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-8191 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A4MT       TCGA-FG-A4MU       TCGA-FG-A4MW       TCGA-FG-A4MX 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A4MY       TCGA-FG-A60J       TCGA-HT-7467       TCGA-HT-7468 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471       TCGA-HT-7472 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475       TCGA-HT-7476 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479       TCGA-HT-7480 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483       TCGA-HT-7485 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603       TCGA-HT-7604 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607       TCGA-HT-7608 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611       TCGA-HT-7616 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677       TCGA-HT-7680 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686       TCGA-HT-7687 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690       TCGA-HT-7691 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7695 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7857 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873       TCGA-HT-7874 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879       TCGA-HT-7880 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884       TCGA-HT-7902 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012       TCGA-HT-8013 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019       TCGA-HT-8104 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107       TCGA-HT-8109 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113       TCGA-HT-8114 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R5 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB       TCGA-HW-7486 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490       TCGA-HW-7491 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320       TCGA-HW-8321 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK       TCGA-HW-A5KM 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET       TCGA-P5-A5EU 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5EY 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1       TCGA-P5-A5F2 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5F4       TCGA-P5-A5F6 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        0      1      1
  ENGASE WILD-TYPE     67    130     57
D104V6, multiclass
[1] "Remove cluster labels:" "ENGASE MUTATED"        
clus
  ENGASE MUTATED ENGASE WILD-TYPE 
               2              254 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7290 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7300 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165       TCGA-DU-8166 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU       TCGA-DU-A5TW 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318       TCGA-E1-5319 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-E1-5322       TCGA-EZ-7264       TCGA-FG-5962       TCGA-FG-5963 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-5964       TCGA-FG-5965       TCGA-FG-6688       TCGA-FG-6689 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7634       TCGA-FG-7636 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-7637       TCGA-FG-7638       TCGA-FG-7641       TCGA-FG-7643 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-8181       TCGA-FG-8182       TCGA-FG-8185       TCGA-FG-8186 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189       TCGA-FG-8191 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A4MT       TCGA-FG-A4MU       TCGA-FG-A4MW       TCGA-FG-A4MX 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-FG-A4MY       TCGA-FG-A60J       TCGA-HT-7467       TCGA-HT-7468 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471       TCGA-HT-7472 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475       TCGA-HT-7476 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479       TCGA-HT-7480 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483       TCGA-HT-7485 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603       TCGA-HT-7604 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607       TCGA-HT-7608 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611       TCGA-HT-7616 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677       TCGA-HT-7680 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686       TCGA-HT-7687 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690       TCGA-HT-7691 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694       TCGA-HT-7695 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856       TCGA-HT-7857 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873       TCGA-HT-7874 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879       TCGA-HT-7880 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884       TCGA-HT-7902 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012       TCGA-HT-8013 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019       TCGA-HT-8104 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107       TCGA-HT-8109 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113       TCGA-HT-8114 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV       TCGA-HT-A5R5 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB       TCGA-HW-7486 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490       TCGA-HW-7491 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320       TCGA-HW-8321 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK       TCGA-HW-A5KM 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET       TCGA-P5-A5EU 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5EY 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1       TCGA-P5-A5F2 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
      TCGA-P5-A5F4       TCGA-P5-A5F6 
"ENGASE WILD-TYPE" "ENGASE WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENGASE MUTATED        0      2      1      1      1
  ENGASE WILD-TYPE    132    107    108    132     29
D104V7, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              0              132
  CLUS_2              2              107
  CLUS_3              1              108
  CLUS_4              1              132
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENGASE MUTATED        1      0      0      1      1      2      0
  ENGASE WILD-TYPE    133     71     36     65     90     39     74
D104V8, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              1               90
  CLUS_6              2               39
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        1      2      1      1
  ENGASE WILD-TYPE    135    105    182     82
D104V9, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              1              135
  CLUS_2              2              105
  CLUS_3              1              182
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        2      1      2
  ENGASE WILD-TYPE    220    183    101
D104V10, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1              183
  CLUS_3              2              101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENGASE MUTATED        2      2      1
  ENGASE WILD-TYPE    182    160    158
D104V11, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              2              182
  CLUS_2              2              160
  CLUS_3              1              158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENGASE MUTATED        1      1      2      1
  ENGASE WILD-TYPE     89    137    186     88
D104V12, multiclass
        clus
vv       ENGASE MUTATED ENGASE WILD-TYPE
  CLUS_1              1               89
  CLUS_2              1              137
  CLUS_3              2              186
  CLUS_4              1               88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(105) Variable = MYH8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH8 MUTATED        1      0      0
  MYH8 WILD-TYPE      8     10      8
D105V1, multiclass
[1] "Remove cluster labels:" "MYH8 MUTATED"          
clus
  MYH8 MUTATED MYH8 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5143     TCGA-DH-5144 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH8 MUTATED        0      1      0      0
  MYH8 WILD-TYPE      7      6      7      6
D105V2, multiclass
[1] "Remove cluster labels:" "MYH8 MUTATED"          
clus
  MYH8 MUTATED MYH8 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-DH-5140     TCGA-DH-5141     TCGA-DH-5143     TCGA-DH-5144 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH8 MUTATED        2      7      5
  MYH8 WILD-TYPE    167    113    216
D105V3, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            7            113
  CLUS_3            5            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH8 MUTATED        6      5      3      0
  MYH8 WILD-TYPE    216     76    165     42
D105V4, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            6            216
  CLUS_2            5             76
  CLUS_3            3            165
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH8 MUTATED        0      2      3      2
  MYH8 WILD-TYPE     52     60     65     72
D105V5, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             60
  CLUS_3            3             65
  CLUS_4            2             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH8 MUTATED        0      6      1
  MYH8 WILD-TYPE     67    125     57
D105V6, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            6            125
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH8 MUTATED        2      6      1      5      0
  MYH8 WILD-TYPE    130    103    108    128     30
D105V7, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            6            103
  CLUS_3            1            108
  CLUS_4            5            128
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH8 MUTATED        1      2      1      2      1      5      2
  MYH8 WILD-TYPE    133     69     35     64     90     36     72
D105V8, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            2             69
  CLUS_3            1             35
  CLUS_4            2             64
  CLUS_5            1             90
  CLUS_6            5             36
  CLUS_7            2             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH8 MUTATED        4      4      4      2
  MYH8 WILD-TYPE    132    103    179     81
D105V9, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            4            132
  CLUS_2            4            103
  CLUS_3            4            179
  CLUS_4            2             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH8 MUTATED        6      3      5
  MYH8 WILD-TYPE    216    181     98
D105V10, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            6            216
  CLUS_2            3            181
  CLUS_3            5             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH8 MUTATED        4      5      5
  MYH8 WILD-TYPE    180    157    154
D105V11, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            4            180
  CLUS_2            5            157
  CLUS_3            5            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH8 MUTATED        2      3      5      4
  MYH8 WILD-TYPE     88    135    183     85
D105V12, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  CLUS_1            2             88
  CLUS_2            3            135
  CLUS_3            5            183
  CLUS_4            4             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(106) Variable = VSIG4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        0      0      0
  VSIG4 WILD-TYPE      9     10      8
D106V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        0      0      0      0
  VSIG4 WILD-TYPE      7      7      7      6
D106V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        4      0      2
  VSIG4 WILD-TYPE    165    120    219
D106V3, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             4             165
  CLUS_2             0             120
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        2      0      2      2
  VSIG4 WILD-TYPE    220     81    166     40
D106V4, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             0              81
  CLUS_3             2             166
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        2      0      1      1
  VSIG4 WILD-TYPE     50     62     67     73
D106V5, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             0              62
  CLUS_3             1              67
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        2      1      1
  VSIG4 WILD-TYPE     65    130     57
D106V6, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1             130
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VSIG4 MUTATED        2      0      2      2      0
  VSIG4 WILD-TYPE    130    109    107    131     30
D106V7, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             0             109
  CLUS_3             2             107
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VSIG4 MUTATED        2      0      1      2      1      0      0
  VSIG4 WILD-TYPE    132     71     35     64     90     41     74
D106V8, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2             132
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             2              64
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        1      1      2      2
  VSIG4 WILD-TYPE    135    106    181     81
D106V9, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1             106
  CLUS_3             2             181
  CLUS_4             2              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        3      3      0
  VSIG4 WILD-TYPE    219    181    103
D106V10, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             3             181
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VSIG4 MUTATED        2      3      1
  VSIG4 WILD-TYPE    182    159    158
D106V11, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             3             159
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VSIG4 MUTATED        0      3      3      0
  VSIG4 WILD-TYPE     90    135    185     89
D106V12, multiclass
        clus
vv       VSIG4 MUTATED VSIG4 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             3             135
  CLUS_3             3             185
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(107) Variable = KRT3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        0      0      0
  KRT3 WILD-TYPE      9     10      8
D107V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        0      0      0      0
  KRT3 WILD-TYPE      7      7      7      6
D107V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        2      1      1
  KRT3 WILD-TYPE    167    119    220
D107V3, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        2      1      1      0
  KRT3 WILD-TYPE    220     80    167     42
D107V4, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        0      2      1      0
  KRT3 WILD-TYPE     52     60     67     74
D107V5, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             60
  CLUS_3            1             67
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        0      3      0
  KRT3 WILD-TYPE     67    128     58
D107V6, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            3            128
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT3 MUTATED        2      1      1      0      0
  KRT3 WILD-TYPE    130    108    108    133     30
D107V7, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT3 MUTATED        1      1      0      0      1      1      0
  KRT3 WILD-TYPE    133     70     36     66     90     40     74
D107V8, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        2      1      0      1
  KRT3 WILD-TYPE    134    106    183     82
D107V9, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            134
  CLUS_2            1            106
  CLUS_3            0            183
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        2      0      2
  KRT3 WILD-TYPE    220    184    101
D107V10, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            0            184
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT3 MUTATED        3      1      0
  KRT3 WILD-TYPE    181    161    159
D107V11, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            3            181
  CLUS_2            1            161
  CLUS_3            0            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT3 MUTATED        2      0      1      1
  KRT3 WILD-TYPE     88    138    187     88
D107V12, multiclass
        clus
vv       KRT3 MUTATED KRT3 WILD-TYPE
  CLUS_1            2             88
  CLUS_2            0            138
  CLUS_3            1            187
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(108) Variable = STAG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        0      0      0
  STAG2 WILD-TYPE      9     10      8
D108V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        0      0      0      0
  STAG2 WILD-TYPE      7      7      7      6
D108V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        0      3      1
  STAG2 WILD-TYPE    169    117    220
D108V3, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             3             117
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        1      3      0      0
  STAG2 WILD-TYPE    221     78    168     42
D108V4, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3              78
  CLUS_3             0             168
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        0      1      1      1
  STAG2 WILD-TYPE     52     61     67     73
D108V5, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             1              67
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        0      2      1
  STAG2 WILD-TYPE     67    129     57
D108V6, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED        0      3      0      1      0
  STAG2 WILD-TYPE    132    106    109    132     30
D108V7, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             3             106
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAG2 MUTATED        0      2      0      0      0      1      1
  STAG2 WILD-TYPE    134     69     36     66     91     40     73
D108V8, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        1      2      1      0
  STAG2 WILD-TYPE    135    105    182     83
D108V9, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             2             105
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        0      1      3
  STAG2 WILD-TYPE    222    183    100
D108V10, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             1             183
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        2      0      2
  STAG2 WILD-TYPE    182    162    157
D108V11, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             0             162
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        0      0      2      2
  STAG2 WILD-TYPE     90    138    186     87
D108V12, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0             138
  CLUS_3             2             186
  CLUS_4             2              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(109) Variable = MUC17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        0      0      0
  MUC17 WILD-TYPE      9     10      8
D109V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED        0      0      0      0
  MUC17 WILD-TYPE      7      7      7      6
D109V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        9      8     10
  MUC17 WILD-TYPE    160    112    211
D109V3, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             9             160
  CLUS_2             8             112
  CLUS_3            10             211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED       12      6      7      2
  MUC17 WILD-TYPE    210     75    161     40
D109V4, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1            12             210
  CLUS_2             6              75
  CLUS_3             7             161
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED        1      4      4      5
  MUC17 WILD-TYPE     51     58     64     69
D109V5, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              58
  CLUS_3             4              64
  CLUS_4             5              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        2      8      4
  MUC17 WILD-TYPE     65    123     54
D109V6, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             8             123
  CLUS_3             4              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC17 MUTATED        5      9      3      7      3
  MUC17 WILD-TYPE    127    100    106    126     27
D109V7, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             5             127
  CLUS_2             9             100
  CLUS_3             3             106
  CLUS_4             7             126
  CLUS_5             3              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC17 MUTATED        7      3      4      3      1      5      4
  MUC17 WILD-TYPE    127     68     32     63     90     36     70
D109V8, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             7             127
  CLUS_2             3              68
  CLUS_3             4              32
  CLUS_4             3              63
  CLUS_5             1              90
  CLUS_6             5              36
  CLUS_7             4              70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED        9      4     14      0
  MUC17 WILD-TYPE    127    103    169     83
D109V9, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             9             127
  CLUS_2             4             103
  CLUS_3            14             169
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        6     12      9
  MUC17 WILD-TYPE    216    172     94
D109V10, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             6             216
  CLUS_2            12             172
  CLUS_3             9              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        7      5     15
  MUC17 WILD-TYPE    177    157    144
D109V11, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             7             177
  CLUS_2             5             157
  CLUS_3            15             144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED        5      2     13      7
  MUC17 WILD-TYPE     85    136    175     82
D109V12, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             5              85
  CLUS_2             2             136
  CLUS_3            13             175
  CLUS_4             7              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(110) Variable = ABCA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        0      0      0
  ABCA7 WILD-TYPE      9     10      8
D110V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        0      0      0      0
  ABCA7 WILD-TYPE      7      7      7      6
D110V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        3      3      3
  ABCA7 WILD-TYPE    166    117    218
D110V3, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3             166
  CLUS_2             3             117
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        3      3      2      1
  ABCA7 WILD-TYPE    219     78    166     41
D110V4, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             3              78
  CLUS_3             2             166
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        3      1      1      0
  ABCA7 WILD-TYPE     49     61     67     74
D110V5, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              61
  CLUS_3             1              67
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        3      2      0
  ABCA7 WILD-TYPE     64    129     58
D110V6, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             2             129
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA7 MUTATED        1      5      1      2      0
  ABCA7 WILD-TYPE    131    104    108    131     30
D110V7, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             5             104
  CLUS_3             1             108
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCA7 MUTATED        1      1      0      1      1      3      2
  ABCA7 WILD-TYPE    133     70     36     65     90     38     72
D110V8, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             3              38
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        2      2      4      1
  ABCA7 WILD-TYPE    134    105    179     82
D110V9, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             2             105
  CLUS_3             4             179
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        2      2      5
  ABCA7 WILD-TYPE    220    182     98
D110V10, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2             182
  CLUS_3             5              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        1      2      6
  ABCA7 WILD-TYPE    183    160    153
D110V11, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             2             160
  CLUS_3             6             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        1      1      3      4
  ABCA7 WILD-TYPE     89    137    185     85
D110V12, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             1             137
  CLUS_3             3             185
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(111) Variable = FOXK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXK1 MUTATED        0      0      1
  FOXK1 WILD-TYPE      9     10      7
D111V1, multiclass
[1] "Remove cluster labels:" "FOXK1 MUTATED"         
clus
  FOXK1 MUTATED FOXK1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5273 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXK1 MUTATED        0      0      0      1
  FOXK1 WILD-TYPE      7      7      7      5
D111V2, multiclass
[1] "Remove cluster labels:" "FOXK1 MUTATED"         
clus
  FOXK1 MUTATED FOXK1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5273 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"FOXK1 WILD-TYPE" "FOXK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXK1 MUTATED        0      3      1
  FOXK1 WILD-TYPE    169    117    220
D111V3, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             3             117
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXK1 MUTATED        1      0      1      2
  FOXK1 WILD-TYPE    221     81    167     40
D111V4, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             0              81
  CLUS_3             1             167
  CLUS_4             2              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXK1 MUTATED        1      0      2      1
  FOXK1 WILD-TYPE     51     62     66     73
D111V5, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              62
  CLUS_3             2              66
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXK1 MUTATED        1      2      1
  FOXK1 WILD-TYPE     66    129     57
D111V6, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXK1 MUTATED        1      0      1      2      0
  FOXK1 WILD-TYPE    131    109    108    131     30
D111V7, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             0             109
  CLUS_3             1             108
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FOXK1 MUTATED        1      0      0      2      1      0      0
  FOXK1 WILD-TYPE    133     71     36     64     90     41     74
D111V8, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             2              64
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXK1 MUTATED        1      0      2      1
  FOXK1 WILD-TYPE    135    107    181     82
D111V9, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             0             107
  CLUS_3             2             181
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXK1 MUTATED        2      2      0
  FOXK1 WILD-TYPE    220    182    103
D111V10, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2             182
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXK1 MUTATED        1      2      1
  FOXK1 WILD-TYPE    183    160    158
D111V11, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             2             160
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXK1 MUTATED        1      0      3      0
  FOXK1 WILD-TYPE     89    138    185     89
D111V12, multiclass
        clus
vv       FOXK1 MUTATED FOXK1 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             0             138
  CLUS_3             3             185
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(112) Variable = SLFN11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        0      0      0
  SLFN11 WILD-TYPE      9     10      8
D112V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        0      0      0      0
  SLFN11 WILD-TYPE      7      7      7      6
D112V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        2      1      1
  SLFN11 WILD-TYPE    167    119    220
D112V3, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              1              119
  CLUS_3              1              220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        2      1      1      0
  SLFN11 WILD-TYPE    220     80    167     42
D112V4, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              1               80
  CLUS_3              1              167
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        0      0      2      1
  SLFN11 WILD-TYPE     52     62     66     73
D112V5, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              0               62
  CLUS_3              2               66
  CLUS_4              1               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        1      1      1
  SLFN11 WILD-TYPE     66    130     57
D112V6, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              1              130
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN11 MUTATED        0      1      1      1      1
  SLFN11 WILD-TYPE    132    108    108    132     29
D112V7, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              0              132
  CLUS_2              1              108
  CLUS_3              1              108
  CLUS_4              1              132
  CLUS_5              1               29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLFN11 MUTATED        1      0      0      1      1      1      0
  SLFN11 WILD-TYPE    133     71     36     65     90     40     74
D112V8, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1              133
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              1               90
  CLUS_6              1               40
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        1      2      1      0
  SLFN11 WILD-TYPE    135    105    182     83
D112V9, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              1              135
  CLUS_2              2              105
  CLUS_3              1              182
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        3      0      1
  SLFN11 WILD-TYPE    219    184    102
D112V10, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              0              184
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN11 MUTATED        2      0      2
  SLFN11 WILD-TYPE    182    162    157
D112V11, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              0              162
  CLUS_3              2              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN11 MUTATED        0      2      2      0
  SLFN11 WILD-TYPE     90    136    186     89
D112V12, multiclass
        clus
vv       SLFN11 MUTATED SLFN11 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              2              136
  CLUS_3              2              186
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(113) Variable = MX2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MX2 MUTATED        0      0      0
  MX2 WILD-TYPE      9     10      8
D113V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MX2 MUTATED        0      0      0      0
  MX2 WILD-TYPE      7      7      7      6
D113V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MX2 MUTATED        1      1      2
  MX2 WILD-TYPE    168    119    219
D113V3, multiclass
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  CLUS_1           1           168
  CLUS_2           1           119
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MX2 MUTATED        1      1      2      0
  MX2 WILD-TYPE    221     80    166     42
D113V4, multiclass
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  CLUS_1           1           221
  CLUS_2           1            80
  CLUS_3           2           166
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MX2 MUTATED        0      0      1      0
  MX2 WILD-TYPE     52     62     67     74
D113V5, multiclass
[1] "Remove cluster labels:" "MX2 MUTATED"           
clus
  MX2 MUTATED MX2 WILD-TYPE 
            1           255 
   TCGA-CS-4938    TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-CS-5393    TCGA-CS-5394    TCGA-CS-5396    TCGA-CS-5397    TCGA-CS-6186 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-CS-6188    TCGA-CS-6665    TCGA-CS-6666    TCGA-CS-6668    TCGA-CS-6669 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-CS-6670    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274    TCGA-DB-5275 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5279    TCGA-DB-5280 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DB-5281    TCGA-DB-A4X9    TCGA-DB-A4XA    TCGA-DB-A4XB    TCGA-DB-A4XC 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DB-A4XD    TCGA-DB-A4XE    TCGA-DB-A4XF    TCGA-DB-A4XG    TCGA-DB-A4XH 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-5847    TCGA-DU-5849    TCGA-DU-5851    TCGA-DU-5852    TCGA-DU-5853 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-5854    TCGA-DU-5855    TCGA-DU-5870    TCGA-DU-5871    TCGA-DU-5872 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-5874    TCGA-DU-6392    TCGA-DU-6393    TCGA-DU-6394    TCGA-DU-6395 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-6396    TCGA-DU-6397    TCGA-DU-6399    TCGA-DU-6400    TCGA-DU-6401 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-6402    TCGA-DU-6403    TCGA-DU-6404    TCGA-DU-6405    TCGA-DU-6406 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-6407    TCGA-DU-6408    TCGA-DU-6410    TCGA-DU-6542    TCGA-DU-7006 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-7007    TCGA-DU-7008    TCGA-DU-7009    TCGA-DU-7010    TCGA-DU-7011 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-7012    TCGA-DU-7013    TCGA-DU-7015    TCGA-DU-7018    TCGA-DU-7019 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-7290    TCGA-DU-7292    TCGA-DU-7294    TCGA-DU-7298    TCGA-DU-7300 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-7301    TCGA-DU-7302    TCGA-DU-7304    TCGA-DU-7306    TCGA-DU-7309 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-8158    TCGA-DU-8161    TCGA-DU-8162    TCGA-DU-8163    TCGA-DU-8164 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-8165    TCGA-DU-8166    TCGA-DU-8167    TCGA-DU-8168    TCGA-DU-A5TP 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-A5TR    TCGA-DU-A5TS    TCGA-DU-A5TT    TCGA-DU-A5TU    TCGA-DU-A5TW 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-A5TY    TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5305 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-E1-5307    TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5319    TCGA-E1-5322 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-EZ-7264    TCGA-FG-5962    TCGA-FG-5963    TCGA-FG-5964    TCGA-FG-5965 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-6688    TCGA-FG-6689    TCGA-FG-6690    TCGA-FG-6691    TCGA-FG-7634 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-7636    TCGA-FG-7637    TCGA-FG-7638    TCGA-FG-7641    TCGA-FG-7643 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-8181    TCGA-FG-8182    TCGA-FG-8185    TCGA-FG-8186    TCGA-FG-8187 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-8188    TCGA-FG-8189    TCGA-FG-8191    TCGA-FG-A4MT    TCGA-FG-A4MU 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-A4MW    TCGA-FG-A4MX    TCGA-FG-A4MY    TCGA-FG-A60J    TCGA-HT-7467 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7468    TCGA-HT-7469    TCGA-HT-7470    TCGA-HT-7471    TCGA-HT-7472 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7473    TCGA-HT-7474    TCGA-HT-7475    TCGA-HT-7476    TCGA-HT-7477 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7478    TCGA-HT-7479    TCGA-HT-7480    TCGA-HT-7481    TCGA-HT-7482 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7483    TCGA-HT-7485    TCGA-HT-7601    TCGA-HT-7602    TCGA-HT-7603 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7604    TCGA-HT-7605    TCGA-HT-7606    TCGA-HT-7607    TCGA-HT-7608 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7609    TCGA-HT-7610    TCGA-HT-7611    TCGA-HT-7620    TCGA-HT-7676 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7677    TCGA-HT-7680    TCGA-HT-7681    TCGA-HT-7684    TCGA-HT-7686 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7687    TCGA-HT-7688    TCGA-HT-7689    TCGA-HT-7690    TCGA-HT-7691 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7692    TCGA-HT-7693    TCGA-HT-7694    TCGA-HT-7695    TCGA-HT-7854 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7855    TCGA-HT-7856    TCGA-HT-7857    TCGA-HT-7858    TCGA-HT-7860 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7873    TCGA-HT-7874    TCGA-HT-7875    TCGA-HT-7877    TCGA-HT-7879 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7880    TCGA-HT-7881    TCGA-HT-7882    TCGA-HT-7884    TCGA-HT-7902 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-8010    TCGA-HT-8011    TCGA-HT-8012    TCGA-HT-8013    TCGA-HT-8015 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-8018    TCGA-HT-8019    TCGA-HT-8104    TCGA-HT-8105    TCGA-HT-8106 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-8107    TCGA-HT-8109    TCGA-HT-8110    TCGA-HT-8111    TCGA-HT-8113 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-8114    TCGA-HT-8558    TCGA-HT-8564    TCGA-HT-A4DV    TCGA-HT-A5R5 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-A5R7    TCGA-HT-A5R9    TCGA-HT-A5RB    TCGA-HW-7486    TCGA-HW-7487 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HW-7489    TCGA-HW-7490    TCGA-HW-7491    TCGA-HW-7495    TCGA-HW-8319 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HW-8320    TCGA-HW-8321    TCGA-HW-8322    TCGA-HW-A5KJ    TCGA-HW-A5KK 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HW-A5KM    TCGA-IK-7675    TCGA-IK-8125    TCGA-P5-A5ET    TCGA-P5-A5EU 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-P5-A5EV    TCGA-P5-A5EW    TCGA-P5-A5EX    TCGA-P5-A5EY    TCGA-P5-A5EZ 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-P5-A5F0    TCGA-P5-A5F1    TCGA-P5-A5F2    TCGA-P5-A5F4    TCGA-P5-A5F6 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MX2 MUTATED        0      1      0
  MX2 WILD-TYPE     67    130     58
D113V6, multiclass
[1] "Remove cluster labels:" "MX2 MUTATED"           
clus
  MX2 MUTATED MX2 WILD-TYPE 
            1           255 
   TCGA-CS-4938    TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-CS-5393    TCGA-CS-5394    TCGA-CS-5396    TCGA-CS-5397    TCGA-CS-6186 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-CS-6188    TCGA-CS-6665    TCGA-CS-6666    TCGA-CS-6668    TCGA-CS-6669 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-CS-6670    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274    TCGA-DB-5275 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5279    TCGA-DB-5280 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DB-5281    TCGA-DB-A4X9    TCGA-DB-A4XA    TCGA-DB-A4XB    TCGA-DB-A4XC 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DB-A4XD    TCGA-DB-A4XE    TCGA-DB-A4XF    TCGA-DB-A4XG    TCGA-DB-A4XH 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-5847    TCGA-DU-5849    TCGA-DU-5851    TCGA-DU-5852    TCGA-DU-5853 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-5854    TCGA-DU-5855    TCGA-DU-5870    TCGA-DU-5871    TCGA-DU-5872 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-5874    TCGA-DU-6392    TCGA-DU-6393    TCGA-DU-6394    TCGA-DU-6395 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-6396    TCGA-DU-6397    TCGA-DU-6399    TCGA-DU-6400    TCGA-DU-6401 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-6402    TCGA-DU-6403    TCGA-DU-6404    TCGA-DU-6405    TCGA-DU-6406 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-6407    TCGA-DU-6408    TCGA-DU-6410    TCGA-DU-6542    TCGA-DU-7006 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-7007    TCGA-DU-7008    TCGA-DU-7009    TCGA-DU-7010    TCGA-DU-7011 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-7012    TCGA-DU-7013    TCGA-DU-7015    TCGA-DU-7018    TCGA-DU-7019 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-7290    TCGA-DU-7292    TCGA-DU-7294    TCGA-DU-7298    TCGA-DU-7300 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-7301    TCGA-DU-7302    TCGA-DU-7304    TCGA-DU-7306    TCGA-DU-7309 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-8158    TCGA-DU-8161    TCGA-DU-8162    TCGA-DU-8163    TCGA-DU-8164 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-8165    TCGA-DU-8166    TCGA-DU-8167    TCGA-DU-8168    TCGA-DU-A5TP 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-A5TR    TCGA-DU-A5TS    TCGA-DU-A5TT    TCGA-DU-A5TU    TCGA-DU-A5TW 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-DU-A5TY    TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5305 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-E1-5307    TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5319    TCGA-E1-5322 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-EZ-7264    TCGA-FG-5962    TCGA-FG-5963    TCGA-FG-5964    TCGA-FG-5965 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-6688    TCGA-FG-6689    TCGA-FG-6690    TCGA-FG-6691    TCGA-FG-7634 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-7636    TCGA-FG-7637    TCGA-FG-7638    TCGA-FG-7641    TCGA-FG-7643 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-8181    TCGA-FG-8182    TCGA-FG-8185    TCGA-FG-8186    TCGA-FG-8187 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-8188    TCGA-FG-8189    TCGA-FG-8191    TCGA-FG-A4MT    TCGA-FG-A4MU 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-FG-A4MW    TCGA-FG-A4MX    TCGA-FG-A4MY    TCGA-FG-A60J    TCGA-HT-7467 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7468    TCGA-HT-7469    TCGA-HT-7470    TCGA-HT-7471    TCGA-HT-7472 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7473    TCGA-HT-7474    TCGA-HT-7475    TCGA-HT-7476    TCGA-HT-7477 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7478    TCGA-HT-7479    TCGA-HT-7480    TCGA-HT-7481    TCGA-HT-7482 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7483    TCGA-HT-7485    TCGA-HT-7601    TCGA-HT-7602    TCGA-HT-7603 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7604    TCGA-HT-7605    TCGA-HT-7606    TCGA-HT-7607    TCGA-HT-7608 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7609    TCGA-HT-7610    TCGA-HT-7611    TCGA-HT-7620    TCGA-HT-7676 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7677    TCGA-HT-7680    TCGA-HT-7681    TCGA-HT-7684    TCGA-HT-7686 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7687    TCGA-HT-7688    TCGA-HT-7689    TCGA-HT-7690    TCGA-HT-7691 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7692    TCGA-HT-7693    TCGA-HT-7694    TCGA-HT-7695    TCGA-HT-7854 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7855    TCGA-HT-7856    TCGA-HT-7857    TCGA-HT-7858    TCGA-HT-7860 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7873    TCGA-HT-7874    TCGA-HT-7875    TCGA-HT-7877    TCGA-HT-7879 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-7880    TCGA-HT-7881    TCGA-HT-7882    TCGA-HT-7884    TCGA-HT-7902 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-8010    TCGA-HT-8011    TCGA-HT-8012    TCGA-HT-8013    TCGA-HT-8015 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-8018    TCGA-HT-8019    TCGA-HT-8104    TCGA-HT-8105    TCGA-HT-8106 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-8107    TCGA-HT-8109    TCGA-HT-8110    TCGA-HT-8111    TCGA-HT-8113 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-8114    TCGA-HT-8558    TCGA-HT-8564    TCGA-HT-A4DV    TCGA-HT-A5R5 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HT-A5R7    TCGA-HT-A5R9    TCGA-HT-A5RB    TCGA-HW-7486    TCGA-HW-7487 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HW-7489    TCGA-HW-7490    TCGA-HW-7491    TCGA-HW-7495    TCGA-HW-8319 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HW-8320    TCGA-HW-8321    TCGA-HW-8322    TCGA-HW-A5KJ    TCGA-HW-A5KK 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-HW-A5KM    TCGA-IK-7675    TCGA-IK-8125    TCGA-P5-A5ET    TCGA-P5-A5EU 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-P5-A5EV    TCGA-P5-A5EW    TCGA-P5-A5EX    TCGA-P5-A5EY    TCGA-P5-A5EZ 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
   TCGA-P5-A5F0    TCGA-P5-A5F1    TCGA-P5-A5F2    TCGA-P5-A5F4    TCGA-P5-A5F6 
"MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" "MX2 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MX2 MUTATED        1      1      1      1      0
  MX2 WILD-TYPE    131    108    108    132     30
D113V7, multiclass
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  CLUS_1           1           131
  CLUS_2           1           108
  CLUS_3           1           108
  CLUS_4           1           132
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MX2 MUTATED        1      1      1      0      1      0      0
  MX2 WILD-TYPE    133     70     35     66     90     41     74
D113V8, multiclass
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  CLUS_1           1           133
  CLUS_2           1            70
  CLUS_3           1            35
  CLUS_4           0            66
  CLUS_5           1            90
  CLUS_6           0            41
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MX2 MUTATED        0      2      1      1
  MX2 WILD-TYPE    136    105    182     82
D113V9, multiclass
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  CLUS_1           0           136
  CLUS_2           2           105
  CLUS_3           1           182
  CLUS_4           1            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MX2 MUTATED        2      1      1
  MX2 WILD-TYPE    220    183    102
D113V10, multiclass
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  CLUS_1           2           220
  CLUS_2           1           183
  CLUS_3           1           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MX2 MUTATED        2      1      1
  MX2 WILD-TYPE    182    161    158
D113V11, multiclass
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  CLUS_1           2           182
  CLUS_2           1           161
  CLUS_3           1           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MX2 MUTATED        0      2      1      1
  MX2 WILD-TYPE     90    136    187     88
D113V12, multiclass
        clus
vv       MX2 MUTATED MX2 WILD-TYPE
  CLUS_1           0            90
  CLUS_2           2           136
  CLUS_3           1           187
  CLUS_4           1            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(114) Variable = SLC6A4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A4 MUTATED        0      0      0
  SLC6A4 WILD-TYPE      9     10      8
D114V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A4 MUTATED        0      0      0      0
  SLC6A4 WILD-TYPE      7      7      7      6
D114V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A4 MUTATED        2      2      1
  SLC6A4 WILD-TYPE    167    118    220
D114V3, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              2              118
  CLUS_3              1              220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A4 MUTATED        3      2      0      0
  SLC6A4 WILD-TYPE    219     79    168     42
D114V4, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              2               79
  CLUS_3              0              168
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A4 MUTATED        0      0      3      0
  SLC6A4 WILD-TYPE     52     62     65     74
D114V5, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              0               62
  CLUS_3              3               65
  CLUS_4              0               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A4 MUTATED        0      3      0
  SLC6A4 WILD-TYPE     67    128     58
D114V6, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              3              128
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A4 MUTATED        2      2      0      1      0
  SLC6A4 WILD-TYPE    130    107    109    132     30
D114V7, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              2              130
  CLUS_2              2              107
  CLUS_3              0              109
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC6A4 MUTATED        2      0      0      1      0      2      0
  SLC6A4 WILD-TYPE    132     71     36     65     91     39     74
D114V8, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              0               91
  CLUS_6              2               39
  CLUS_7              0               74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A4 MUTATED        2      1      2      0
  SLC6A4 WILD-TYPE    134    106    181     83
D114V9, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              2              134
  CLUS_2              1              106
  CLUS_3              2              181
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A4 MUTATED        3      1      1
  SLC6A4 WILD-TYPE    219    183    102
D114V10, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              1              183
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A4 MUTATED        2      1      2
  SLC6A4 WILD-TYPE    182    161    157
D114V11, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              1              161
  CLUS_3              2              157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A4 MUTATED        2      0      3      0
  SLC6A4 WILD-TYPE     88    138    185     89
D114V12, multiclass
        clus
vv       SLC6A4 MUTATED SLC6A4 WILD-TYPE
  CLUS_1              2               88
  CLUS_2              0              138
  CLUS_3              3              185
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(115) Variable = KRT15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        0      0      0
  KRT15 WILD-TYPE      9     10      8
D115V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        0      0      0      0
  KRT15 WILD-TYPE      7      7      7      6
D115V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        1      3      2
  KRT15 WILD-TYPE    168    117    219
D115V3, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             3             117
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        3      1      2      0
  KRT15 WILD-TYPE    219     80    166     42
D115V4, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1              80
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        0      1      1      0
  KRT15 WILD-TYPE     52     61     67     74
D115V5, multiclass
[1] "Remove cluster labels:" "KRT15 MUTATED"         
clus
  KRT15 MUTATED KRT15 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7467      TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7471      TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7479      TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7483      TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7603      TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        0      2      0
  KRT15 WILD-TYPE     67    129     58
D115V6, multiclass
[1] "Remove cluster labels:" "KRT15 MUTATED"         
clus
  KRT15 MUTATED KRT15 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7467      TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7471      TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7479      TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7483      TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7603      TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"KRT15 WILD-TYPE" "KRT15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT15 MUTATED        0      2      1      3      0
  KRT15 WILD-TYPE    132    107    108    130     30
D115V7, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             2             107
  CLUS_3             1             108
  CLUS_4             3             130
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT15 MUTATED        0      1      0      1      2      1      1
  KRT15 WILD-TYPE    134     70     36     65     89     40     73
D115V8, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             2              89
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        3      0      2      1
  KRT15 WILD-TYPE    133    107    181     82
D115V9, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             3             133
  CLUS_2             0             107
  CLUS_3             2             181
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        2      3      1
  KRT15 WILD-TYPE    220    181    102
D115V10, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             3             181
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT15 MUTATED        2      2      2
  KRT15 WILD-TYPE    182    160    157
D115V11, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             2             160
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT15 MUTATED        1      2      2      1
  KRT15 WILD-TYPE     89    136    186     88
D115V12, multiclass
        clus
vv       KRT15 MUTATED KRT15 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             2             136
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(116) Variable = F8 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        0      0      0
  F8 WILD-TYPE      9     10      8
D116V1, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        0      0      0      0
  F8 WILD-TYPE      7      7      7      6
D116V2, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        4      5      0
  F8 WILD-TYPE    165    115    221
D116V3, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4          165
  CLUS_2          5          115
  CLUS_3          0          221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        3      5      0      1
  F8 WILD-TYPE    219     76    168     41
D116V4, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          3          219
  CLUS_2          5           76
  CLUS_3          0          168
  CLUS_4          1           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        2      1      1      0
  F8 WILD-TYPE     50     61     67     74
D116V5, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          2           50
  CLUS_2          1           61
  CLUS_3          1           67
  CLUS_4          0           74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        1      3      0
  F8 WILD-TYPE     66    128     58
D116V6, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          1           66
  CLUS_2          3          128
  CLUS_3          0           58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        2      6      0      1      0
  F8 WILD-TYPE    130    103    109    132     30
D116V7, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          2          130
  CLUS_2          6          103
  CLUS_3          0          109
  CLUS_4          1          132
  CLUS_5          0           30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  F8 MUTATED        2      4      0      1      0      2      0
  F8 WILD-TYPE    132     67     36     65     91     39     74
D116V8, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          2          132
  CLUS_2          4           67
  CLUS_3          0           36
  CLUS_4          1           65
  CLUS_5          0           91
  CLUS_6          2           39
  CLUS_7          0           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        2      4      1      2
  F8 WILD-TYPE    134    103    182     81
D116V9, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          2          134
  CLUS_2          4          103
  CLUS_3          1          182
  CLUS_4          2           81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        4      1      4
  F8 WILD-TYPE    218    183     99
D116V10, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4          218
  CLUS_2          1          183
  CLUS_3          4           99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        5      1      3
  F8 WILD-TYPE    179    161    156
D116V11, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          5          179
  CLUS_2          1          161
  CLUS_3          3          156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        1      3      2      3
  F8 WILD-TYPE     89    135    186     86
D116V12, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          1           89
  CLUS_2          3          135
  CLUS_3          2          186
  CLUS_4          3           86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(117) Variable = HOOK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        0      1      0
  HOOK1 WILD-TYPE      9      9      8
D117V1, multiclass
[1] "Remove cluster labels:" "HOOK1 MUTATED"         
clus
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5394 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        0      0      1      0
  HOOK1 WILD-TYPE      7      7      6      6
D117V2, multiclass
[1] "Remove cluster labels:" "HOOK1 MUTATED"         
clus
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              1              26 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5394 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270      TCGA-DB-5273 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276      TCGA-DB-5277 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281      TCGA-DH-5140 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5311 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5322 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        1      1      1
  HOOK1 WILD-TYPE    168    119    220
D117V3, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             1             119
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        1      1      1      0
  HOOK1 WILD-TYPE    221     80    167     42
D117V4, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        0      0      1      1
  HOOK1 WILD-TYPE     52     62     67     73
D117V5, multiclass
[1] "Remove cluster labels:" "HOOK1 MUTATED"         
clus
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140      TCGA-DH-5141 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144      TCGA-DU-5847 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393      TCGA-DU-6394 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397      TCGA-DU-6399 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402      TCGA-DU-6403 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406      TCGA-DU-6407 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542      TCGA-DU-7006 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009      TCGA-DU-7010 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        1      1      0
  HOOK1 WILD-TYPE     66    130     58
D117V6, multiclass
[1] "Remove cluster labels:" "HOOK1 MUTATED"         
clus
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396      TCGA-CS-5397 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665      TCGA-CS-6666 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670      TCGA-DB-5270 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279      TCGA-DB-5280 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA      TCGA-DB-A4XB 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE      TCGA-DB-A4XF 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140      TCGA-DH-5141 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144      TCGA-DU-5847 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852      TCGA-DU-5853 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870      TCGA-DU-5871 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393      TCGA-DU-6394 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397      TCGA-DU-6399 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402      TCGA-DU-6403 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406      TCGA-DU-6407 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542      TCGA-DU-7006 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009      TCGA-DU-7010 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"HOOK1 WILD-TYPE" "HOOK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOOK1 MUTATED        0      2      1      0      0
  HOOK1 WILD-TYPE    132    107    108    133     30
D117V7, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             2             107
  CLUS_3             1             108
  CLUS_4             0             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HOOK1 MUTATED        0      0      1      0      0      2      0
  HOOK1 WILD-TYPE    134     71     35     66     91     39     74
D117V8, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        0      2      1      0
  HOOK1 WILD-TYPE    136    105    182     83
D117V9, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             2             105
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        1      0      2
  HOOK1 WILD-TYPE    221    184    101
D117V10, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             0             184
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        1      1      1
  HOOK1 WILD-TYPE    183    161    158
D117V11, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             1             161
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        0      1      1      1
  HOOK1 WILD-TYPE     90    137    187     88
D117V12, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             1             187
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(118) Variable = FMR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        0      0      0
  FMR1 WILD-TYPE      9     10      8
D118V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        0      0      0      0
  FMR1 WILD-TYPE      7      7      7      6
D118V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        3      1      1
  FMR1 WILD-TYPE    166    119    220
D118V3, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            3            166
  CLUS_2            1            119
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        2      2      0      1
  FMR1 WILD-TYPE    220     79    168     41
D118V4, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            2             79
  CLUS_3            0            168
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        1      0      1      0
  FMR1 WILD-TYPE     51     62     67     74
D118V5, multiclass
[1] "Remove cluster labels:" "FMR1 MUTATED"          
clus
  FMR1 MUTATED FMR1 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8189     TCGA-FG-8191 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467     TCGA-HT-7468 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        1      1      0
  FMR1 WILD-TYPE     66    130     58
D118V6, multiclass
[1] "Remove cluster labels:" "FMR1 MUTATED"          
clus
  FMR1 MUTATED FMR1 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8189     TCGA-FG-8191 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467     TCGA-HT-7468 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"FMR1 WILD-TYPE" "FMR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FMR1 MUTATED        3      2      0      0      0
  FMR1 WILD-TYPE    129    107    109    133     30
D118V7, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            3            129
  CLUS_2            2            107
  CLUS_3            0            109
  CLUS_4            0            133
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FMR1 MUTATED        3      1      0      0      0      1      0
  FMR1 WILD-TYPE    131     70     36     66     91     40     74
D118V8, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            3            131
  CLUS_2            1             70
  CLUS_3            0             36
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        1      3      1      0
  FMR1 WILD-TYPE    135    104    182     83
D118V9, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            1            135
  CLUS_2            3            104
  CLUS_3            1            182
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        1      2      2
  FMR1 WILD-TYPE    221    182    101
D118V10, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            2            182
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMR1 MUTATED        3      0      2
  FMR1 WILD-TYPE    181    162    157
D118V11, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            3            181
  CLUS_2            0            162
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMR1 MUTATED        1      1      2      1
  FMR1 WILD-TYPE     89    137    186     88
D118V12, multiclass
        clus
vv       FMR1 MUTATED FMR1 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            2            186
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(119) Variable = SON MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        1      0      0
  SON WILD-TYPE      8     10      8
D119V1, multiclass
[1] "Remove cluster labels:" "SON MUTATED"           
clus
  SON MUTATED SON WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5281 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-E1-5322 
"SON WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        1      0      0      0
  SON WILD-TYPE      6      7      7      6
D119V2, multiclass
[1] "Remove cluster labels:" "SON MUTATED"           
clus
  SON MUTATED SON WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5281 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5304    TCGA-E1-5311    TCGA-E1-5318 
"SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" "SON WILD-TYPE" 
   TCGA-E1-5322 
"SON WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        2      4      2
  SON WILD-TYPE    167    116    219
D119V3, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           2           167
  CLUS_2           4           116
  CLUS_3           2           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        2      4      2      0
  SON WILD-TYPE    220     77    166     42
D119V4, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           2           220
  CLUS_2           4            77
  CLUS_3           2           166
  CLUS_4           0            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        1      0      3      2
  SON WILD-TYPE     51     62     65     72
D119V5, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           1            51
  CLUS_2           0            62
  CLUS_3           3            65
  CLUS_4           2            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        0      5      1
  SON WILD-TYPE     67    126     57
D119V6, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           0            67
  CLUS_2           5           126
  CLUS_3           1            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SON MUTATED        2      3      2      1      0
  SON WILD-TYPE    130    106    107    132     30
D119V7, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           2           130
  CLUS_2           3           106
  CLUS_3           2           107
  CLUS_4           1           132
  CLUS_5           0            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SON MUTATED        2      2      1      1      1      1      0
  SON WILD-TYPE    132     69     35     65     90     40     74
D119V8, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           2           132
  CLUS_2           2            69
  CLUS_3           1            35
  CLUS_4           1            65
  CLUS_5           1            90
  CLUS_6           1            40
  CLUS_7           0            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        2      2      2      2
  SON WILD-TYPE    134    105    181     81
D119V9, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           2           134
  CLUS_2           2           105
  CLUS_3           2           181
  CLUS_4           2            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        3      2      3
  SON WILD-TYPE    219    182    100
D119V10, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           3           219
  CLUS_2           2           182
  CLUS_3           3           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        3      1      3
  SON WILD-TYPE    181    161    156
D119V11, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           3           181
  CLUS_2           1           161
  CLUS_3           3           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        1      0      3      3
  SON WILD-TYPE     89    138    185     86
D119V12, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           1            89
  CLUS_2           0           138
  CLUS_3           3           185
  CLUS_4           3            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(120) Variable = TTC30B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TTC30B MUTATED        0      0      0
  TTC30B WILD-TYPE      9     10      8
D120V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC30B MUTATED        0      0      0      0
  TTC30B WILD-TYPE      7      7      7      6
D120V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TTC30B MUTATED        3      1      2
  TTC30B WILD-TYPE    166    119    219
D120V3, multiclass
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  CLUS_1              3              166
  CLUS_2              1              119
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC30B MUTATED        4      1      1      0
  TTC30B WILD-TYPE    218     80    167     42
D120V4, multiclass
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  CLUS_1              4              218
  CLUS_2              1               80
  CLUS_3              1              167
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC30B MUTATED        0      0      1      0
  TTC30B WILD-TYPE     52     62     67     74
D120V5, multiclass
[1] "Remove cluster labels:" "TTC30B MUTATED"        
clus
  TTC30B MUTATED TTC30B WILD-TYPE 
               1              255 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7290 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7300 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165       TCGA-DU-8166 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU       TCGA-DU-A5TW 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264       TCGA-FG-5962 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965       TCGA-FG-6688 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7634 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-7636       TCGA-FG-7637       TCGA-FG-7638       TCGA-FG-7641 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-7643       TCGA-FG-8181       TCGA-FG-8182       TCGA-FG-8185 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-8191       TCGA-FG-A4MT       TCGA-FG-A4MU       TCGA-FG-A4MW 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-A4MX       TCGA-FG-A4MY       TCGA-FG-A60J       TCGA-HT-7467 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7468       TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7472       TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7476       TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7480       TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7485       TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7604       TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7608       TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7616       TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7680       TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7687       TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7691       TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7695       TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7857       TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7874       TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7880       TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7902       TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-8013       TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-8104       TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-8109       TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-8114       TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-A5R5       TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HW-7486       TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HW-7491       TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HW-8321       TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HW-A5KM       TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-P5-A5EY       TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TTC30B MUTATED        0      1      0
  TTC30B WILD-TYPE     67    130     58
D120V6, multiclass
[1] "Remove cluster labels:" "TTC30B MUTATED"        
clus
  TTC30B MUTATED TTC30B WILD-TYPE 
               1              255 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6393 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396       TCGA-DU-6397 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401       TCGA-DU-6402 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405       TCGA-DU-6406 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410       TCGA-DU-6542 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008       TCGA-DU-7009 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012       TCGA-DU-7013 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019       TCGA-DU-7290 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298       TCGA-DU-7300 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304       TCGA-DU-7306 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161       TCGA-DU-8162 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165       TCGA-DU-8166 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP       TCGA-DU-A5TR 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU       TCGA-DU-A5TW 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303       TCGA-E1-5304 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311       TCGA-E1-5318 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264       TCGA-FG-5962 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965       TCGA-FG-6688 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691       TCGA-FG-7634 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-7636       TCGA-FG-7637       TCGA-FG-7638       TCGA-FG-7641 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-7643       TCGA-FG-8181       TCGA-FG-8182       TCGA-FG-8185 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188       TCGA-FG-8189 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-8191       TCGA-FG-A4MT       TCGA-FG-A4MU       TCGA-FG-A4MW 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-FG-A4MX       TCGA-FG-A4MY       TCGA-FG-A60J       TCGA-HT-7467 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7468       TCGA-HT-7469       TCGA-HT-7470       TCGA-HT-7471 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7472       TCGA-HT-7473       TCGA-HT-7474       TCGA-HT-7475 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7476       TCGA-HT-7477       TCGA-HT-7478       TCGA-HT-7479 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7480       TCGA-HT-7481       TCGA-HT-7482       TCGA-HT-7483 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7485       TCGA-HT-7601       TCGA-HT-7602       TCGA-HT-7603 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7604       TCGA-HT-7605       TCGA-HT-7606       TCGA-HT-7607 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7608       TCGA-HT-7609       TCGA-HT-7610       TCGA-HT-7611 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7616       TCGA-HT-7620       TCGA-HT-7676       TCGA-HT-7677 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7680       TCGA-HT-7681       TCGA-HT-7684       TCGA-HT-7686 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7687       TCGA-HT-7688       TCGA-HT-7689       TCGA-HT-7690 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7691       TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7695       TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7857       TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7874       TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7880       TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-7902       TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-8013       TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-8104       TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-8109       TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-8114       TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HT-A5R5       TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HW-7486       TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HW-7491       TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HW-8321       TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-HW-A5KM       TCGA-IK-7675       TCGA-IK-8125       TCGA-P5-A5ET 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-P5-A5EU       TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-P5-A5EY       TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
      TCGA-P5-A5F2       TCGA-P5-A5F4       TCGA-P5-A5F6 
"TTC30B WILD-TYPE" "TTC30B WILD-TYPE" "TTC30B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTC30B MUTATED        3      1      1      1      0
  TTC30B WILD-TYPE    129    108    108    132     30
D120V7, multiclass
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  CLUS_1              3              129
  CLUS_2              1              108
  CLUS_3              1              108
  CLUS_4              1              132
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTC30B MUTATED        2      0      0      0      1      2      1
  TTC30B WILD-TYPE    132     71     36     66     90     39     73
D120V8, multiclass
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  CLUS_1              2              132
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              1               90
  CLUS_6              2               39
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC30B MUTATED        1      4      1      0
  TTC30B WILD-TYPE    135    103    182     83
D120V9, multiclass
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  CLUS_1              1              135
  CLUS_2              4              103
  CLUS_3              1              182
  CLUS_4              0               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TTC30B MUTATED        4      1      1
  TTC30B WILD-TYPE    218    183    102
D120V10, multiclass
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  CLUS_1              4              218
  CLUS_2              1              183
  CLUS_3              1              102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TTC30B MUTATED        1      2      3
  TTC30B WILD-TYPE    183    160    156
D120V11, multiclass
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  CLUS_1              1              183
  CLUS_2              2              160
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC30B MUTATED        0      3      3      0
  TTC30B WILD-TYPE     90    135    185     89
D120V12, multiclass
        clus
vv       TTC30B MUTATED TTC30B WILD-TYPE
  CLUS_1              0               90
  CLUS_2              3              135
  CLUS_3              3              185
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(121) Variable = FANCD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        0      0      0
  FANCD2 WILD-TYPE      9     10      8
D121V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        0      0      0      0
  FANCD2 WILD-TYPE      7      7      7      6
D121V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        2      3      2
  FANCD2 WILD-TYPE    167    117    219
D121V3, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              3              117
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        3      1      1      2
  FANCD2 WILD-TYPE    219     80    167     40
D121V4, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              3              219
  CLUS_2              1               80
  CLUS_3              1              167
  CLUS_4              2               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        0      0      3      0
  FANCD2 WILD-TYPE     52     62     65     74
D121V5, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              0               62
  CLUS_3              3               65
  CLUS_4              0               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        0      3      0
  FANCD2 WILD-TYPE     67    128     58
D121V6, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              3              128
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCD2 MUTATED        1      2      0      2      2
  FANCD2 WILD-TYPE    131    107    109    131     28
D121V7, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              1              131
  CLUS_2              2              107
  CLUS_3              0              109
  CLUS_4              2              131
  CLUS_5              2               28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FANCD2 MUTATED        2      1      0      0      1      2      1
  FANCD2 WILD-TYPE    132     70     36     66     90     39     73
D121V8, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2              132
  CLUS_2              1               70
  CLUS_3              0               36
  CLUS_4              0               66
  CLUS_5              1               90
  CLUS_6              2               39
  CLUS_7              1               73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        3      1      2      1
  FANCD2 WILD-TYPE    133    106    181     82
D121V9, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              3              133
  CLUS_2              1              106
  CLUS_3              2              181
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        2      2      3
  FANCD2 WILD-TYPE    220    182    100
D121V10, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              2              182
  CLUS_3              3              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        2      2      3
  FANCD2 WILD-TYPE    182    160    156
D121V11, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2              182
  CLUS_2              2              160
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        2      0      3      2
  FANCD2 WILD-TYPE     88    138    185     87
D121V12, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               88
  CLUS_2              0              138
  CLUS_3              3              185
  CLUS_4              2               87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(122) Variable = RGL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGL2 MUTATED        0      0      0
  RGL2 WILD-TYPE      9     10      8
D122V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGL2 MUTATED        0      0      0      0
  RGL2 WILD-TYPE      7      7      7      6
D122V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGL2 MUTATED        2      1      1
  RGL2 WILD-TYPE    167    119    220
D122V3, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            1            119
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGL2 MUTATED        2      1      1      0
  RGL2 WILD-TYPE    220     80    167     42
D122V4, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGL2 MUTATED        0      0      2      0
  RGL2 WILD-TYPE     52     62     66     74
D122V5, multiclass
[1] "Remove cluster labels:" "RGL2 MUTATED"          
clus
  RGL2 MUTATED RGL2 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR     TCGA-DU-A5TS 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A5TY 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962     TCGA-FG-5963 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467     TCGA-HT-7468 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGL2 MUTATED        0      1      1
  RGL2 WILD-TYPE     67    130     57
D122V6, multiclass
[1] "Remove cluster labels:" "RGL2 MUTATED"          
clus
  RGL2 MUTATED RGL2 WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR     TCGA-DU-A5TS 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW     TCGA-DU-A5TY 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5305 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318     TCGA-E1-5319 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962     TCGA-FG-5963 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688     TCGA-FG-6689 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634     TCGA-FG-7636 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641     TCGA-FG-7643 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185     TCGA-FG-8186 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189     TCGA-FG-8191 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW     TCGA-FG-A4MX 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467     TCGA-HT-7468 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"RGL2 WILD-TYPE" "RGL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGL2 MUTATED        1      2      0      1      0
  RGL2 WILD-TYPE    131    107    109    132     30
D122V7, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            2            107
  CLUS_3            0            109
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RGL2 MUTATED        1      0      1      0      0      2      0
  RGL2 WILD-TYPE    133     71     35     66     91     39     74
D122V8, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            0             66
  CLUS_5            0             91
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGL2 MUTATED        0      2      2      0
  RGL2 WILD-TYPE    136    105    181     83
D122V9, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            2            181
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGL2 MUTATED        1      1      2
  RGL2 WILD-TYPE    221    183    101
D122V10, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            1            183
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGL2 MUTATED        1      1      2
  RGL2 WILD-TYPE    183    161    157
D122V11, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGL2 MUTATED        0      1      3      0
  RGL2 WILD-TYPE     90    137    185     89
D122V12, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            3            185
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(123) Variable = NR1H3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        0      0      0
  NR1H3 WILD-TYPE      9     10      8
D123V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        0      0      0      0
  NR1H3 WILD-TYPE      7      7      7      6
D123V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        1      2      1
  NR1H3 WILD-TYPE    168    118    220
D123V3, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        1      2      1      0
  NR1H3 WILD-TYPE    221     79    167     42
D123V4, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        1      0      2      0
  NR1H3 WILD-TYPE     51     62     66     74
D123V5, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              62
  CLUS_3             2              66
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        1      2      0
  NR1H3 WILD-TYPE     66    129     58
D123V6, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2             129
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NR1H3 MUTATED        0      3      1      0      0
  NR1H3 WILD-TYPE    132    106    108    133     30
D123V7, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             3             106
  CLUS_3             1             108
  CLUS_4             0             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NR1H3 MUTATED        0      1      0      0      1      2      0
  NR1H3 WILD-TYPE    134     70     36     66     90     39     74
D123V8, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        0      3      1      0
  NR1H3 WILD-TYPE    136    104    182     83
D123V9, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             3             104
  CLUS_3             1             182
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        0      1      3
  NR1H3 WILD-TYPE    222    183    100
D123V10, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             1             183
  CLUS_3             3             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        2      0      2
  NR1H3 WILD-TYPE    182    162    157
D123V11, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             2             182
  CLUS_2             0             162
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        0      0      2      2
  NR1H3 WILD-TYPE     90    138    186     87
D123V12, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0             138
  CLUS_3             2             186
  CLUS_4             2              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(124) Variable = TYRP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRP1 MUTATED        0      0      0
  TYRP1 WILD-TYPE      9     10      8
D124V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRP1 MUTATED        0      0      0      0
  TYRP1 WILD-TYPE      7      7      7      6
D124V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRP1 MUTATED        1      2      1
  TYRP1 WILD-TYPE    168    118    220
D124V3, multiclass
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             2             118
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRP1 MUTATED        1      2      1      0
  TYRP1 WILD-TYPE    221     79    167     42
D124V4, multiclass
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2              79
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRP1 MUTATED        0      1      1      0
  TYRP1 WILD-TYPE     52     61     67     74
D124V5, multiclass
[1] "Remove cluster labels:" "TYRP1 MUTATED"         
clus
  TYRP1 MUTATED TYRP1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6406      TCGA-DU-6407 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542      TCGA-DU-7006 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009      TCGA-DU-7010 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRP1 MUTATED        0      2      0
  TYRP1 WILD-TYPE     67    129     58
D124V6, multiclass
[1] "Remove cluster labels:" "TYRP1 MUTATED"         
clus
  TYRP1 MUTATED TYRP1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6406      TCGA-DU-6407 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542      TCGA-DU-7006 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009      TCGA-DU-7010 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013      TCGA-DU-7015 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290      TCGA-DU-7292 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300      TCGA-DU-7301 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306      TCGA-DU-7309 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162      TCGA-DU-8163 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166      TCGA-DU-8167 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR      TCGA-DU-A5TS 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW      TCGA-DU-A5TY 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304      TCGA-E1-5305 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318      TCGA-E1-5319 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962      TCGA-FG-5963 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688      TCGA-FG-6689 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634      TCGA-FG-7636 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"TYRP1 WILD-TYPE" "TYRP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TYRP1 MUTATED        0      2      0      1      1
  TYRP1 WILD-TYPE    132    107    109    132     29
D124V7, multiclass
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             2             107
  CLUS_3             0             109
  CLUS_4             1             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TYRP1 MUTATED        1      1      1      0      0      1      0
  TYRP1 WILD-TYPE    133     70     35     66     91     40     74
D124V8, multiclass
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             1              35
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRP1 MUTATED        0      2      2      0
  TYRP1 WILD-TYPE    136    105    181     83
D124V9, multiclass
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             2             105
  CLUS_3             2             181
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRP1 MUTATED        1      1      2
  TYRP1 WILD-TYPE    221    183    101
D124V10, multiclass
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRP1 MUTATED        1      1      2
  TYRP1 WILD-TYPE    183    161    157
D124V11, multiclass
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             1             161
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRP1 MUTATED        0      0      3      1
  TYRP1 WILD-TYPE     90    138    185     88
D124V12, multiclass
        clus
vv       TYRP1 MUTATED TYRP1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0             138
  CLUS_3             3             185
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(125) Variable = SLC25A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        0      0      1
  SLC25A5 WILD-TYPE      9     10      7
D125V1, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      0      0      0
  SLC25A5 WILD-TYPE      6      7      7      6
D125V2, multiclass
[1] "Remove cluster labels:" "SLC25A5 MUTATED"       
clus
  SLC25A5 MUTATED SLC25A5 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"SLC25A5 WILD-TYPE" "SLC25A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        1      2      1
  SLC25A5 WILD-TYPE    168    118    220
D125V3, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               168
  CLUS_2               2               118
  CLUS_3               1               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        2      1      0      1
  SLC25A5 WILD-TYPE    220     80    168     41
D125V4, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1                80
  CLUS_3               0               168
  CLUS_4               1                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        0      0      0      0
  SLC25A5 WILD-TYPE     52     62     68     74
D125V5, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        0      0      0
  SLC25A5 WILD-TYPE     67    131     58
D125V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A5 MUTATED        1      1      0      2      0
  SLC25A5 WILD-TYPE    131    108    109    131     30
D125V7, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               1               108
  CLUS_3               0               109
  CLUS_4               2               131
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC25A5 MUTATED        1      0      0      2      0      0      1
  SLC25A5 WILD-TYPE    133     71     36     64     91     41     73
D125V8, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               2                64
  CLUS_5               0                91
  CLUS_6               0                41
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      0      2      1
  SLC25A5 WILD-TYPE    135    107    181     82
D125V9, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               0               107
  CLUS_3               2               181
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        1      2      1
  SLC25A5 WILD-TYPE    221    182    102
D125V10, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               2               182
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC25A5 MUTATED        2      0      2
  SLC25A5 WILD-TYPE    182    162    157
D125V11, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               2               182
  CLUS_2               0               162
  CLUS_3               2               157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A5 MUTATED        1      0      2      1
  SLC25A5 WILD-TYPE     89    138    186     88
D125V12, multiclass
        clus
vv       SLC25A5 MUTATED SLC25A5 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               2               186
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(126) Variable = AGBL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        0      0      0
  AGBL1 WILD-TYPE      9     10      8
D126V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        0      0      0      0
  AGBL1 WILD-TYPE      7      7      7      6
D126V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        1      3      1
  AGBL1 WILD-TYPE    168    117    220
D126V3, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             3             117
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        1      3      1      0
  AGBL1 WILD-TYPE    221     78    167     42
D126V4, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3              78
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        0      1      2      0
  AGBL1 WILD-TYPE     52     61     66     74
D126V5, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              61
  CLUS_3             2              66
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        0      3      0
  AGBL1 WILD-TYPE     67    128     58
D126V6, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             3             128
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGBL1 MUTATED        0      4      1      0      0
  AGBL1 WILD-TYPE    132    105    108    133     30
D126V7, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             4             105
  CLUS_3             1             108
  CLUS_4             0             133
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGBL1 MUTATED        0      2      0      0      1      2      0
  AGBL1 WILD-TYPE    134     69     36     66     90     39     74
D126V8, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             2              69
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        2      2      0      1
  AGBL1 WILD-TYPE    134    105    183     82
D126V9, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             2             105
  CLUS_3             0             183
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        1      0      4
  AGBL1 WILD-TYPE    221    184     99
D126V10, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             0             184
  CLUS_3             4              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL1 MUTATED        4      1      0
  AGBL1 WILD-TYPE    180    161    159
D126V11, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             4             180
  CLUS_2             1             161
  CLUS_3             0             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL1 MUTATED        0      1      0      4
  AGBL1 WILD-TYPE     90    137    188     85
D126V12, multiclass
        clus
vv       AGBL1 MUTATED AGBL1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             0             188
  CLUS_4             4              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(127) Variable = AMPD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        0      0      0
  AMPD1 WILD-TYPE      9     10      8
D127V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        0      0      0      0
  AMPD1 WILD-TYPE      7      7      7      6
D127V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        0      3      1
  AMPD1 WILD-TYPE    169    117    220
D127V3, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             3             117
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        2      2      0      0
  AMPD1 WILD-TYPE    220     79    168     42
D127V4, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             2              79
  CLUS_3             0             168
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        0      0      1      0
  AMPD1 WILD-TYPE     52     62     67     74
D127V5, multiclass
[1] "Remove cluster labels:" "AMPD1 MUTATED"         
clus
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              1             255 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-P5-A5EY      TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        0      1      0
  AMPD1 WILD-TYPE     67    130     58
D127V6, multiclass
[1] "Remove cluster labels:" "AMPD1 MUTATED"         
clus
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              1             255 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-7902      TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-8013      TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-8104      TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-8109      TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-8114      TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HT-A5R5      TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HW-7486      TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HW-7491      TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HW-8321      TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-HW-A5KM      TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-P5-A5EU      TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-P5-A5EY      TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-P5-A5F2      TCGA-P5-A5F4      TCGA-P5-A5F6 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMPD1 MUTATED        1      1      0      2      0
  AMPD1 WILD-TYPE    131    108    109    131     30
D127V7, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             0             109
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMPD1 MUTATED        0      0      0      2      0      2      0
  AMPD1 WILD-TYPE    134     71     36     64     91     39     74
D127V8, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             2              64
  CLUS_5             0              91
  CLUS_6             2              39
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        0      2      2      0
  AMPD1 WILD-TYPE    136    105    181     83
D127V9, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             2             105
  CLUS_3             2             181
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        1      1      2
  AMPD1 WILD-TYPE    221    183    101
D127V10, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             2             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        1      0      3
  AMPD1 WILD-TYPE    183    162    156
D127V11, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             0             162
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        0      1      2      1
  AMPD1 WILD-TYPE     90    137    186     88
D127V12, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             2             186
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(128) Variable = NGEF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        0      0      0
  NGEF WILD-TYPE      9     10      8
D128V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        0      0      0      0
  NGEF WILD-TYPE      7      7      7      6
D128V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        2      2      2
  NGEF WILD-TYPE    167    118    219
D128V3, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            2            167
  CLUS_2            2            118
  CLUS_3            2            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        2      2      2      0
  NGEF WILD-TYPE    220     79    166     42
D128V4, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            2            220
  CLUS_2            2             79
  CLUS_3            2            166
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        1      0      2      0
  NGEF WILD-TYPE     51     62     66     74
D128V5, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            1             51
  CLUS_2            0             62
  CLUS_3            2             66
  CLUS_4            0             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        1      2      0
  NGEF WILD-TYPE     66    129     58
D128V6, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            1             66
  CLUS_2            2            129
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NGEF MUTATED        2      1      1      1      1
  NGEF WILD-TYPE    130    108    108    132     29
D128V7, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            2            130
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            1            132
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NGEF MUTATED        2      0      0      1      1      1      1
  NGEF WILD-TYPE    132     71     36     65     90     40     73
D128V8, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        0      2      3      1
  NGEF WILD-TYPE    136    105    180     82
D128V9, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        2      3      1
  NGEF WILD-TYPE    220    181    102
D128V10, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            2            220
  CLUS_2            3            181
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        1      1      4
  NGEF WILD-TYPE    183    161    155
D128V11, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            4            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        0      2      4      0
  NGEF WILD-TYPE     90    136    184     89
D128V12, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            0             90
  CLUS_2            2            136
  CLUS_3            4            184
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(129) Variable = YIPF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        0      0      0
  YIPF1 WILD-TYPE      9     10      8
D129V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        0      0      0      0
  YIPF1 WILD-TYPE      7      7      7      6
D129V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        1      1      1
  YIPF1 WILD-TYPE    168    119    220
D129V3, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             1             119
  CLUS_3             1             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        1      1      1      0
  YIPF1 WILD-TYPE    221     80    167     42
D129V4, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        0      0      2      1
  YIPF1 WILD-TYPE     52     62     66     73
D129V5, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             0              62
  CLUS_3             2              66
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        1      2      0
  YIPF1 WILD-TYPE     66    129     58
D129V6, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2             129
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF1 MUTATED        0      1      1      0      1
  YIPF1 WILD-TYPE    132    108    108    133     29
D129V7, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             0             133
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YIPF1 MUTATED        0      0      1      1      0      1      0
  YIPF1 WILD-TYPE    134     71     35     65     91     40     74
D129V8, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             1              35
  CLUS_4             1              65
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        0      1      1      1
  YIPF1 WILD-TYPE    136    106    182     82
D129V9, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        1      1      1
  YIPF1 WILD-TYPE    221    183    102
D129V10, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        0      1      2
  YIPF1 WILD-TYPE    184    161    157
D129V11, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             161
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        0      1      2      0
  YIPF1 WILD-TYPE     90    137    186     89
D129V12, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             2             186
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(130) Variable = PDHA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDHA1 MUTATED        1      1      0
  PDHA1 WILD-TYPE      8      9      8
D130V1, multiclass
[1] "Remove cluster labels:" "PDHA1 MUTATED"         
clus
  PDHA1 MUTATED PDHA1 WILD-TYPE 
              2              25 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-DH-5144      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-E1-5311 
"PDHA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDHA1 MUTATED        0      1      1      0
  PDHA1 WILD-TYPE      7      6      6      6
D130V2, multiclass
[1] "Remove cluster labels:" "PDHA1 MUTATED"         
clus
  PDHA1 MUTATED PDHA1 WILD-TYPE 
              2              25 
     TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944      TCGA-CS-5390 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-CS-5394      TCGA-CS-5395      TCGA-CS-5396      TCGA-DB-5270 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275      TCGA-DB-5276 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5280      TCGA-DB-5281 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-DH-5140      TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-DH-5144      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" "PDHA1 WILD-TYPE" 
     TCGA-E1-5311 
"PDHA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDHA1 MUTATED        0      1      4
  PDHA1 WILD-TYPE    169    119    217
D130V3, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3             4             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDHA1 MUTATED        1      1      3      0
  PDHA1 WILD-TYPE    221     80    165     42
D130V4, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             3             165
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDHA1 MUTATED        1      3      0      0
  PDHA1 WILD-TYPE     51     59     68     74
D130V5, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              59
  CLUS_3             0              68
  CLUS_4             0              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDHA1 MUTATED        1      3      0
  PDHA1 WILD-TYPE     66    128     58
D130V6, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             3             128
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDHA1 MUTATED        1      1      1      1      1
  PDHA1 WILD-TYPE    131    108    108    132     29
D130V7, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDHA1 MUTATED        1      1      0      0      3      0      0
  PDHA1 WILD-TYPE    133     70     36     66     88     41     74
D130V8, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             3              88
  CLUS_6             0              41
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDHA1 MUTATED        2      1      2      0
  PDHA1 WILD-TYPE    134    106    181     83
D130V9, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             2             134
  CLUS_2             1             106
  CLUS_3             2             181
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDHA1 MUTATED        3      1      1
  PDHA1 WILD-TYPE    219    183    102
D130V10, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             1             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDHA1 MUTATED        1      3      1
  PDHA1 WILD-TYPE    183    159    158
D130V11, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             3             159
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDHA1 MUTATED        0      3      1      1
  PDHA1 WILD-TYPE     90    135    187     88
D130V12, multiclass
        clus
vv       PDHA1 MUTATED PDHA1 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             3             135
  CLUS_3             1             187
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(131) Variable = ASXL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      0      0
  ASXL2 WILD-TYPE      9     10      8
D131V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      0      0      0
  ASXL2 WILD-TYPE      7      7      7      6
D131V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      1      2
  ASXL2 WILD-TYPE    169    119    219
D131V3, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      1      2      0
  ASXL2 WILD-TYPE    222     80    166     42
D131V4, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             1              80
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      0      2      0
  ASXL2 WILD-TYPE     52     62     66     74
D131V5, multiclass
[1] "Remove cluster labels:" "ASXL2 MUTATED"         
clus
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7641      TCGA-FG-7643 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      1      1
  ASXL2 WILD-TYPE     67    130     57
D131V6, multiclass
[1] "Remove cluster labels:" "ASXL2 MUTATED"         
clus
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7641      TCGA-FG-7643 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"ASXL2 WILD-TYPE" "ASXL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL2 MUTATED        0      1      1      1      0
  ASXL2 WILD-TYPE    132    108    108    132     30
D131V7, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASXL2 MUTATED        0      0      0      0      1      1      1
  ASXL2 WILD-TYPE    134     71     36     66     90     40     73
D131V8, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             1              90
  CLUS_6             1              40
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      1      1      1
  ASXL2 WILD-TYPE    136    106    182     82
D131V9, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        1      1      1
  ASXL2 WILD-TYPE    221    183    102
D131V10, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1             183
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        0      1      2
  ASXL2 WILD-TYPE    184    161    157
D131V11, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             161
  CLUS_3             2             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      1      2      0
  ASXL2 WILD-TYPE     90    137    186     89
D131V12, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             2             186
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(132) Variable = HLA-DRA MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HLA-DRA MUTATED        1      0      0
  HLA-DRA WILD-TYPE      8     10      8
D132V1, multiclass
[1] "Remove cluster labels:" "HLA-DRA MUTATED"       
clus
  HLA-DRA MUTATED HLA-DRA WILD-TYPE 
                1                26 
       TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390        TCGA-CS-5394 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-DRA MUTATED        1      0      0      0
  HLA-DRA WILD-TYPE      6      7      7      6
D132V2, multiclass
[1] "Remove cluster labels:" "HLA-DRA MUTATED"       
clus
  HLA-DRA MUTATED HLA-DRA WILD-TYPE 
                1                26 
       TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390        TCGA-CS-5394 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270        TCGA-DB-5273 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276        TCGA-DB-5277 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281        TCGA-DH-5140 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HLA-DRA MUTATED        0      3      0
  HLA-DRA WILD-TYPE    169    117    221
D132V3, multiclass
        clus
vv       HLA-DRA MUTATED HLA-DRA WILD-TYPE
  CLUS_1               0               169
  CLUS_2               3               117
  CLUS_3               0               221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-DRA MUTATED        2      1      0      0
  HLA-DRA WILD-TYPE    220     80    168     42
D132V4, multiclass
        clus
vv       HLA-DRA MUTATED HLA-DRA WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1                80
  CLUS_3               0               168
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-DRA MUTATED        1      0      1      0
  HLA-DRA WILD-TYPE     51     62     67     74
D132V5, multiclass
[1] "Remove cluster labels:" "HLA-DRA MUTATED"       
clus
  HLA-DRA MUTATED HLA-DRA WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396        TCGA-CS-5397 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665        TCGA-CS-6666 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670        TCGA-DB-5270 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279        TCGA-DB-5280 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA        TCGA-DB-A4XB 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE        TCGA-DB-A4XF 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140        TCGA-DH-5141 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DU-5847 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6393        TCGA-DU-6394 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397        TCGA-DU-6399 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402        TCGA-DU-6403 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406        TCGA-DU-6407 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542        TCGA-DU-7006 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009        TCGA-DU-7010 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013        TCGA-DU-7015 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290        TCGA-DU-7292 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300        TCGA-DU-7301 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166        TCGA-DU-8167 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR        TCGA-DU-A5TS 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A5TY 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962        TCGA-FG-5963 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634        TCGA-FG-7636 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641        TCGA-FG-7643 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185        TCGA-FG-8186 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-8191 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467        TCGA-HT-7468 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HLA-DRA MUTATED        1      1      0
  HLA-DRA WILD-TYPE     66    130     58
D132V6, multiclass
[1] "Remove cluster labels:" "HLA-DRA MUTATED"       
clus
  HLA-DRA MUTATED HLA-DRA WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396        TCGA-CS-5397 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665        TCGA-CS-6666 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670        TCGA-DB-5270 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279        TCGA-DB-5280 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA        TCGA-DB-A4XB 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE        TCGA-DB-A4XF 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140        TCGA-DH-5141 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144        TCGA-DU-5847 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6393        TCGA-DU-6394 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397        TCGA-DU-6399 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402        TCGA-DU-6403 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406        TCGA-DU-6407 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542        TCGA-DU-7006 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009        TCGA-DU-7010 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013        TCGA-DU-7015 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290        TCGA-DU-7292 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300        TCGA-DU-7301 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166        TCGA-DU-8167 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR        TCGA-DU-A5TS 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A5TY 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962        TCGA-FG-5963 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634        TCGA-FG-7636 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641        TCGA-FG-7643 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185        TCGA-FG-8186 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-8191 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467        TCGA-HT-7468 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"HLA-DRA WILD-TYPE" "HLA-DRA WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-DRA MUTATED        1      2      0      0      0
  HLA-DRA WILD-TYPE    131    107    109    133     30
D132V7, multiclass
        clus
vv       HLA-DRA MUTATED HLA-DRA WILD-TYPE
  CLUS_1               1               131
  CLUS_2               2               107
  CLUS_3               0               109
  CLUS_4               0               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-DRA MUTATED        1      0      0      0      0      2      0
  HLA-DRA WILD-TYPE    133     71     36     66     91     39     74
D132V8, multiclass
        clus
vv       HLA-DRA MUTATED HLA-DRA WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               2                39
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-DRA MUTATED        1      2      0      0
  HLA-DRA WILD-TYPE    135    105    183     83
D132V9, multiclass
        clus
vv       HLA-DRA MUTATED HLA-DRA WILD-TYPE
  CLUS_1               1               135
  CLUS_2               2               105
  CLUS_3               0               183
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HLA-DRA MUTATED        1      0      2
  HLA-DRA WILD-TYPE    221    184    101
D132V10, multiclass
        clus
vv       HLA-DRA MUTATED HLA-DRA WILD-TYPE
  CLUS_1               1               221
  CLUS_2               0               184
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HLA-DRA MUTATED        0      2      1
  HLA-DRA WILD-TYPE    184    160    158
D132V11, multiclass
        clus
vv       HLA-DRA MUTATED HLA-DRA WILD-TYPE
  CLUS_1               0               184
  CLUS_2               2               160
  CLUS_3               1               158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-DRA MUTATED        0      1      1      1
  HLA-DRA WILD-TYPE     90    137    187     88
D132V12, multiclass
        clus
vv       HLA-DRA MUTATED HLA-DRA WILD-TYPE
  CLUS_1               0                90
  CLUS_2               1               137
  CLUS_3               1               187
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(133) Variable = ALPP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALPP MUTATED        0      1      0
  ALPP WILD-TYPE      9      9      8
D133V1, multiclass
[1] "Remove cluster labels:" "ALPP MUTATED"          
clus
  ALPP MUTATED ALPP WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5394 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPP MUTATED        0      0      1      0
  ALPP WILD-TYPE      7      7      6      6
D133V2, multiclass
[1] "Remove cluster labels:" "ALPP MUTATED"          
clus
  ALPP MUTATED ALPP WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5394 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5270     TCGA-DB-5273 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALPP MUTATED        2      2      1
  ALPP WILD-TYPE    167    118    220
D133V3, multiclass
        clus
vv       ALPP MUTATED ALPP WILD-TYPE
  CLUS_1            2            167
  CLUS_2            2            118
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPP MUTATED        2      2      1      0
  ALPP WILD-TYPE    220     79    167     42
D133V4, multiclass
        clus
vv       ALPP MUTATED ALPP WILD-TYPE
  CLUS_1            2            220
  CLUS_2            2             79
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPP MUTATED        0      0      1      1
  ALPP WILD-TYPE     52     62     67     73
D133V5, multiclass
[1] "Remove cluster labels:" "ALPP MUTATED"          
clus
  ALPP MUTATED ALPP WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396     TCGA-CS-5397 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665     TCGA-CS-6666 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140     TCGA-DH-5141 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DU-5847 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-HT-7467     TCGA-HT-7468 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALPP MUTATED        1      1      0
  ALPP WILD-TYPE     66    130     58
D133V6, multiclass
[1] "Remove cluster labels:" "ALPP MUTATED"          
clus
  ALPP MUTATED ALPP WILD-TYPE 
             2            254 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396     TCGA-CS-5397 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665     TCGA-CS-6666 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670     TCGA-DB-5270 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279     TCGA-DB-5280 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA     TCGA-DB-A4XB 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE     TCGA-DB-A4XF 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140     TCGA-DH-5141 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144     TCGA-DU-5847 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852     TCGA-DU-5853 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870     TCGA-DU-5871 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6392     TCGA-DU-6393 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A60J     TCGA-HT-7467     TCGA-HT-7468 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471     TCGA-HT-7472 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475     TCGA-HT-7476 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479     TCGA-HT-7480 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483     TCGA-HT-7485 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603     TCGA-HT-7604 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607     TCGA-HT-7608 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611     TCGA-HT-7616 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677     TCGA-HT-7680 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686     TCGA-HT-7687 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690     TCGA-HT-7691 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694     TCGA-HT-7695 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856     TCGA-HT-7857 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873     TCGA-HT-7874 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879     TCGA-HT-7880 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884     TCGA-HT-7902 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012     TCGA-HT-8013 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019     TCGA-HT-8104 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107     TCGA-HT-8109 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113     TCGA-HT-8114 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV     TCGA-HT-A5R5 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB     TCGA-HW-7486 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490     TCGA-HW-7491 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320     TCGA-HW-8321 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK     TCGA-HW-A5KM 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET     TCGA-P5-A5EU 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX     TCGA-P5-A5EY 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1     TCGA-P5-A5F2 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" "ALPP WILD-TYPE" 
    TCGA-P5-A5F4     TCGA-P5-A5F6 
"ALPP WILD-TYPE" "ALPP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPP MUTATED        0      1      1      0      3
  ALPP WILD-TYPE    132    108    108    133     27
D133V7, multiclass
        clus
vv       ALPP MUTATED ALPP WILD-TYPE
  CLUS_1            0            132
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            0            133
  CLUS_5            3             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALPP MUTATED        2      1      1      1      0      0      0
  ALPP WILD-TYPE    132     70     35     65     91     41     74
D133V8, multiclass
        clus
vv       ALPP MUTATED ALPP WILD-TYPE
  CLUS_1            2            132
  CLUS_2            1             70
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            0             91
  CLUS_6            0             41
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPP MUTATED        3      0      2      0
  ALPP WILD-TYPE    133    107    181     83
D133V9, multiclass
        clus
vv       ALPP MUTATED ALPP WILD-TYPE
  CLUS_1            3            133
  CLUS_2            0            107
  CLUS_3            2            181
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALPP MUTATED        3      1      1
  ALPP WILD-TYPE    219    183    102
D133V10, multiclass
        clus
vv       ALPP MUTATED ALPP WILD-TYPE
  CLUS_1            3            219
  CLUS_2            1            183
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALPP MUTATED        1      3      1
  ALPP WILD-TYPE    183    159    158
D133V11, multiclass
        clus
vv       ALPP MUTATED ALPP WILD-TYPE
  CLUS_1            1            183
  CLUS_2            3            159
  CLUS_3            1            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPP MUTATED        1      2      1      1
  ALPP WILD-TYPE     89    136    187     88
D133V12, multiclass
        clus
vv       ALPP MUTATED ALPP WILD-TYPE
  CLUS_1            1             89
  CLUS_2            2            136
  CLUS_3            1            187
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(134) Variable = CDH3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      0      0
  CDH3 WILD-TYPE      9     10      8
D134V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        0      0      0      0
  CDH3 WILD-TYPE      7      7      7      6
D134V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      2      1
  CDH3 WILD-TYPE    169    118    220
D134V3, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0            169
  CLUS_2            2            118
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        1      1      1      0
  CDH3 WILD-TYPE    221     80    167     42
D134V4, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            1             80
  CLUS_3            1            167
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        0      0      1      0
  CDH3 WILD-TYPE     52     62     67     74
D134V5, multiclass
[1] "Remove cluster labels:" "CDH3 MUTATED"          
clus
  CDH3 MUTATED CDH3 WILD-TYPE 
             1            255 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      1      0
  CDH3 WILD-TYPE     67    130     58
D134V6, multiclass
[1] "Remove cluster labels:" "CDH3 MUTATED"          
clus
  CDH3 MUTATED CDH3 WILD-TYPE 
             1            255 
    TCGA-CS-4938     TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-5390     TCGA-CS-5393     TCGA-CS-5394     TCGA-CS-5396 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-5397     TCGA-CS-6186     TCGA-CS-6188     TCGA-CS-6665 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-CS-6666     TCGA-CS-6668     TCGA-CS-6669     TCGA-CS-6670 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5270     TCGA-DB-5273     TCGA-DB-5274     TCGA-DB-5275 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5276     TCGA-DB-5277     TCGA-DB-5278     TCGA-DB-5279 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-5280     TCGA-DB-5281     TCGA-DB-A4X9     TCGA-DB-A4XA 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A4XB     TCGA-DB-A4XC     TCGA-DB-A4XD     TCGA-DB-A4XE 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DB-A4XF     TCGA-DB-A4XG     TCGA-DB-A4XH     TCGA-DH-5140 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5847     TCGA-DU-5849     TCGA-DU-5851     TCGA-DU-5852 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5853     TCGA-DU-5854     TCGA-DU-5855     TCGA-DU-5870 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-5871     TCGA-DU-5872     TCGA-DU-5874     TCGA-DU-6393 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6394     TCGA-DU-6395     TCGA-DU-6396     TCGA-DU-6397 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6399     TCGA-DU-6400     TCGA-DU-6401     TCGA-DU-6402 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6403     TCGA-DU-6404     TCGA-DU-6405     TCGA-DU-6406 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-6407     TCGA-DU-6408     TCGA-DU-6410     TCGA-DU-6542 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7006     TCGA-DU-7007     TCGA-DU-7008     TCGA-DU-7009 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7010     TCGA-DU-7011     TCGA-DU-7012     TCGA-DU-7013 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7015     TCGA-DU-7018     TCGA-DU-7019     TCGA-DU-7290 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7292     TCGA-DU-7294     TCGA-DU-7298     TCGA-DU-7300 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7301     TCGA-DU-7302     TCGA-DU-7304     TCGA-DU-7306 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-7309     TCGA-DU-8158     TCGA-DU-8161     TCGA-DU-8162 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-8163     TCGA-DU-8164     TCGA-DU-8165     TCGA-DU-8166 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-8167     TCGA-DU-8168     TCGA-DU-A5TP     TCGA-DU-A5TR 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A5TS     TCGA-DU-A5TT     TCGA-DU-A5TU     TCGA-DU-A5TW 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-DU-A5TY     TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5305     TCGA-E1-5307     TCGA-E1-5311     TCGA-E1-5318 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-E1-5319     TCGA-E1-5322     TCGA-EZ-7264     TCGA-FG-5962 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-5963     TCGA-FG-5964     TCGA-FG-5965     TCGA-FG-6688 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-6689     TCGA-FG-6690     TCGA-FG-6691     TCGA-FG-7634 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-7636     TCGA-FG-7637     TCGA-FG-7638     TCGA-FG-7641 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-7643     TCGA-FG-8181     TCGA-FG-8182     TCGA-FG-8185 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-8186     TCGA-FG-8187     TCGA-FG-8188     TCGA-FG-8189 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-8191     TCGA-FG-A4MT     TCGA-FG-A4MU     TCGA-FG-A4MW 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FG-A4MX     TCGA-FG-A4MY     TCGA-FG-A60J     TCGA-HT-7467 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7468     TCGA-HT-7469     TCGA-HT-7470     TCGA-HT-7471 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7472     TCGA-HT-7473     TCGA-HT-7474     TCGA-HT-7475 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7476     TCGA-HT-7477     TCGA-HT-7478     TCGA-HT-7479 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7480     TCGA-HT-7481     TCGA-HT-7482     TCGA-HT-7483 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7485     TCGA-HT-7601     TCGA-HT-7602     TCGA-HT-7603 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7604     TCGA-HT-7605     TCGA-HT-7606     TCGA-HT-7607 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7608     TCGA-HT-7609     TCGA-HT-7610     TCGA-HT-7611 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7616     TCGA-HT-7620     TCGA-HT-7676     TCGA-HT-7677 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7680     TCGA-HT-7681     TCGA-HT-7684     TCGA-HT-7686 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7687     TCGA-HT-7688     TCGA-HT-7689     TCGA-HT-7690 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7691     TCGA-HT-7692     TCGA-HT-7693     TCGA-HT-7694 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7695     TCGA-HT-7854     TCGA-HT-7855     TCGA-HT-7856 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7857     TCGA-HT-7858     TCGA-HT-7860     TCGA-HT-7873 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7874     TCGA-HT-7875     TCGA-HT-7877     TCGA-HT-7879 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7880     TCGA-HT-7881     TCGA-HT-7882     TCGA-HT-7884 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-7902     TCGA-HT-8010     TCGA-HT-8011     TCGA-HT-8012 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8013     TCGA-HT-8015     TCGA-HT-8018     TCGA-HT-8019 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8104     TCGA-HT-8105     TCGA-HT-8106     TCGA-HT-8107 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8109     TCGA-HT-8110     TCGA-HT-8111     TCGA-HT-8113 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-8114     TCGA-HT-8558     TCGA-HT-8564     TCGA-HT-A4DV 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HT-A5R5     TCGA-HT-A5R7     TCGA-HT-A5R9     TCGA-HT-A5RB 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-7486     TCGA-HW-7487     TCGA-HW-7489     TCGA-HW-7490 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-7491     TCGA-HW-7495     TCGA-HW-8319     TCGA-HW-8320 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-8321     TCGA-HW-8322     TCGA-HW-A5KJ     TCGA-HW-A5KK 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HW-A5KM     TCGA-IK-7675     TCGA-IK-8125     TCGA-P5-A5ET 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5EU     TCGA-P5-A5EV     TCGA-P5-A5EW     TCGA-P5-A5EX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5EY     TCGA-P5-A5EZ     TCGA-P5-A5F0     TCGA-P5-A5F1 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-P5-A5F2     TCGA-P5-A5F4     TCGA-P5-A5F6 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH3 MUTATED        0      1      1      1      0
  CDH3 WILD-TYPE    132    108    108    132     30
D134V7, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0            132
  CLUS_2            1            108
  CLUS_3            1            108
  CLUS_4            1            132
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH3 MUTATED        0      0      0      1      1      1      0
  CDH3 WILD-TYPE    134     71     36     65     90     40     74
D134V8, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0            134
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            1             65
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        0      1      1      1
  CDH3 WILD-TYPE    136    106    182     82
D134V9, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            1            106
  CLUS_3            1            182
  CLUS_4            1             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        1      1      1
  CDH3 WILD-TYPE    221    183    102
D134V10, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1            221
  CLUS_2            1            183
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      1      2
  CDH3 WILD-TYPE    184    161    157
D134V11, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            1            161
  CLUS_3            2            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        0      1      2      0
  CDH3 WILD-TYPE     90    137    186     89
D134V12, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            1            137
  CLUS_3            2            186
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(135) Variable = NADSYN1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NADSYN1 MUTATED        0      0      0
  NADSYN1 WILD-TYPE      9     10      8
D135V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NADSYN1 MUTATED        0      0      0      0
  NADSYN1 WILD-TYPE      7      7      7      6
D135V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NADSYN1 MUTATED        1      2      0
  NADSYN1 WILD-TYPE    168    118    221
D135V3, multiclass
        clus
vv       NADSYN1 MUTATED NADSYN1 WILD-TYPE
  CLUS_1               1               168
  CLUS_2               2               118
  CLUS_3               0               221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NADSYN1 MUTATED        2      1      0      0
  NADSYN1 WILD-TYPE    220     80    168     42
D135V4, multiclass
        clus
vv       NADSYN1 MUTATED NADSYN1 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1                80
  CLUS_3               0               168
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NADSYN1 MUTATED        1      0      1      0
  NADSYN1 WILD-TYPE     51     62     67     74
D135V5, multiclass
[1] "Remove cluster labels:" "NADSYN1 MUTATED"       
clus
  NADSYN1 MUTATED NADSYN1 WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6393 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8189        TCGA-FG-8191 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467        TCGA-HT-7468 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NADSYN1 MUTATED        1      1      0
  NADSYN1 WILD-TYPE     66    130     58
D135V6, multiclass
[1] "Remove cluster labels:" "NADSYN1 MUTATED"       
clus
  NADSYN1 MUTATED NADSYN1 WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6393 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8189        TCGA-FG-8191 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467        TCGA-HT-7468 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"NADSYN1 WILD-TYPE" "NADSYN1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NADSYN1 MUTATED        1      2      0      0      0
  NADSYN1 WILD-TYPE    131    107    109    133     30
D135V7, multiclass
        clus
vv       NADSYN1 MUTATED NADSYN1 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               2               107
  CLUS_3               0               109
  CLUS_4               0               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NADSYN1 MUTATED        1      0      0      0      0      2      0
  NADSYN1 WILD-TYPE    133     71     36     66     91     39     74
D135V8, multiclass
        clus
vv       NADSYN1 MUTATED NADSYN1 WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               2                39
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NADSYN1 MUTATED        1      1      0      1
  NADSYN1 WILD-TYPE    135    106    183     82
D135V9, multiclass
        clus
vv       NADSYN1 MUTATED NADSYN1 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               1               106
  CLUS_3               0               183
  CLUS_4               1                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NADSYN1 MUTATED        1      0      2
  NADSYN1 WILD-TYPE    221    184    101
D135V10, multiclass
        clus
vv       NADSYN1 MUTATED NADSYN1 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               0               184
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NADSYN1 MUTATED        2      0      1
  NADSYN1 WILD-TYPE    182    162    158
D135V11, multiclass
        clus
vv       NADSYN1 MUTATED NADSYN1 WILD-TYPE
  CLUS_1               2               182
  CLUS_2               0               162
  CLUS_3               1               158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NADSYN1 MUTATED        1      0      1      1
  NADSYN1 WILD-TYPE     89    138    187     88
D135V12, multiclass
        clus
vv       NADSYN1 MUTATED NADSYN1 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               1               187
  CLUS_4               1                88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(136) Variable = LHFPL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LHFPL1 MUTATED        0      0      0
  LHFPL1 WILD-TYPE      9     10      8
D136V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHFPL1 MUTATED        0      0      0      0
  LHFPL1 WILD-TYPE      7      7      7      6
D136V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LHFPL1 MUTATED        2      0      2
  LHFPL1 WILD-TYPE    167    120    219
D136V3, multiclass
        clus
vv       LHFPL1 MUTATED LHFPL1 WILD-TYPE
  CLUS_1              2              167
  CLUS_2              0              120
  CLUS_3              2              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHFPL1 MUTATED        2      0      2      0
  LHFPL1 WILD-TYPE    220     81    166     42
D136V4, multiclass
        clus
vv       LHFPL1 MUTATED LHFPL1 WILD-TYPE
  CLUS_1              2              220
  CLUS_2              0               81
  CLUS_3              2              166
  CLUS_4              0               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHFPL1 MUTATED        0      0      1      1
  LHFPL1 WILD-TYPE     52     62     67     73
D136V5, multiclass
[1] "Remove cluster labels:" "LHFPL1 MUTATED"        
clus
  LHFPL1 MUTATED LHFPL1 WILD-TYPE 
               2              254 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6392 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6393       TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6397       TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6402       TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6406       TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6542       TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7009       TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7013       TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7290       TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-8166       TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-A5TR       TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-A5TW       TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-5962       TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-6688       TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-7634       TCGA-FG-7636       TCGA-FG-7637       TCGA-FG-7638 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-7641       TCGA-FG-7643       TCGA-FG-8181       TCGA-FG-8182 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-8185       TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-8189       TCGA-FG-8191       TCGA-FG-A4MT       TCGA-FG-A4MU 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A4MY       TCGA-FG-A60J 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7467       TCGA-HT-7468       TCGA-HT-7469       TCGA-HT-7470 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7471       TCGA-HT-7472       TCGA-HT-7473       TCGA-HT-7474 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7475       TCGA-HT-7476       TCGA-HT-7477       TCGA-HT-7478 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7479       TCGA-HT-7480       TCGA-HT-7481       TCGA-HT-7482 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7483       TCGA-HT-7485       TCGA-HT-7601       TCGA-HT-7602 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7603       TCGA-HT-7604       TCGA-HT-7605       TCGA-HT-7606 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7607       TCGA-HT-7608       TCGA-HT-7609       TCGA-HT-7610 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7611       TCGA-HT-7616       TCGA-HT-7620       TCGA-HT-7676 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7677       TCGA-HT-7680       TCGA-HT-7681       TCGA-HT-7684 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7686       TCGA-HT-7687       TCGA-HT-7689       TCGA-HT-7690 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7691       TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7695       TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7857       TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7874       TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7880       TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7902       TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-8013       TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-8104       TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-8109       TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-8114       TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-A5R5       TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HW-7486       TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HW-7491       TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HW-8321       TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HW-A5KM       TCGA-IK-7675       TCGA-P5-A5ET       TCGA-P5-A5EU 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5EY 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1       TCGA-P5-A5F2 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-P5-A5F4       TCGA-P5-A5F6 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LHFPL1 MUTATED        0      1      1
  LHFPL1 WILD-TYPE     67    130     57
D136V6, multiclass
[1] "Remove cluster labels:" "LHFPL1 MUTATED"        
clus
  LHFPL1 MUTATED LHFPL1 WILD-TYPE 
               2              254 
      TCGA-CS-4938       TCGA-CS-4942       TCGA-CS-4943       TCGA-CS-4944 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-CS-5390       TCGA-CS-5393       TCGA-CS-5394       TCGA-CS-5396 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-CS-5397       TCGA-CS-6186       TCGA-CS-6188       TCGA-CS-6665 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-CS-6666       TCGA-CS-6668       TCGA-CS-6669       TCGA-CS-6670 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-5270       TCGA-DB-5273       TCGA-DB-5274       TCGA-DB-5275 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-5276       TCGA-DB-5277       TCGA-DB-5278       TCGA-DB-5279 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-5280       TCGA-DB-5281       TCGA-DB-A4X9       TCGA-DB-A4XA 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-A4XB       TCGA-DB-A4XC       TCGA-DB-A4XD       TCGA-DB-A4XE 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DB-A4XF       TCGA-DB-A4XG       TCGA-DB-A4XH       TCGA-DH-5140 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DH-5141       TCGA-DH-5142       TCGA-DH-5143       TCGA-DH-5144 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-5847       TCGA-DU-5849       TCGA-DU-5851       TCGA-DU-5852 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-5853       TCGA-DU-5854       TCGA-DU-5855       TCGA-DU-5870 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-5871       TCGA-DU-5872       TCGA-DU-5874       TCGA-DU-6392 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6393       TCGA-DU-6394       TCGA-DU-6395       TCGA-DU-6396 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6397       TCGA-DU-6399       TCGA-DU-6400       TCGA-DU-6401 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6402       TCGA-DU-6403       TCGA-DU-6404       TCGA-DU-6405 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6406       TCGA-DU-6407       TCGA-DU-6408       TCGA-DU-6410 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-6542       TCGA-DU-7006       TCGA-DU-7007       TCGA-DU-7008 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7009       TCGA-DU-7010       TCGA-DU-7011       TCGA-DU-7012 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7013       TCGA-DU-7015       TCGA-DU-7018       TCGA-DU-7019 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7290       TCGA-DU-7292       TCGA-DU-7294       TCGA-DU-7298 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7300       TCGA-DU-7301       TCGA-DU-7302       TCGA-DU-7304 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-7306       TCGA-DU-7309       TCGA-DU-8158       TCGA-DU-8161 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-8162       TCGA-DU-8163       TCGA-DU-8164       TCGA-DU-8165 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-8166       TCGA-DU-8167       TCGA-DU-8168       TCGA-DU-A5TP 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-A5TR       TCGA-DU-A5TS       TCGA-DU-A5TT       TCGA-DU-A5TU 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-DU-A5TW       TCGA-DU-A5TY       TCGA-E1-5302       TCGA-E1-5303 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-E1-5304       TCGA-E1-5305       TCGA-E1-5307       TCGA-E1-5311 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-E1-5318       TCGA-E1-5319       TCGA-E1-5322       TCGA-EZ-7264 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-5962       TCGA-FG-5963       TCGA-FG-5964       TCGA-FG-5965 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-6688       TCGA-FG-6689       TCGA-FG-6690       TCGA-FG-6691 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-7634       TCGA-FG-7636       TCGA-FG-7637       TCGA-FG-7638 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-7641       TCGA-FG-7643       TCGA-FG-8181       TCGA-FG-8182 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-8185       TCGA-FG-8186       TCGA-FG-8187       TCGA-FG-8188 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-8189       TCGA-FG-8191       TCGA-FG-A4MT       TCGA-FG-A4MU 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-FG-A4MW       TCGA-FG-A4MX       TCGA-FG-A4MY       TCGA-FG-A60J 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7467       TCGA-HT-7468       TCGA-HT-7469       TCGA-HT-7470 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7471       TCGA-HT-7472       TCGA-HT-7473       TCGA-HT-7474 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7475       TCGA-HT-7476       TCGA-HT-7477       TCGA-HT-7478 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7479       TCGA-HT-7480       TCGA-HT-7481       TCGA-HT-7482 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7483       TCGA-HT-7485       TCGA-HT-7601       TCGA-HT-7602 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7603       TCGA-HT-7604       TCGA-HT-7605       TCGA-HT-7606 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7607       TCGA-HT-7608       TCGA-HT-7609       TCGA-HT-7610 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7611       TCGA-HT-7616       TCGA-HT-7620       TCGA-HT-7676 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7677       TCGA-HT-7680       TCGA-HT-7681       TCGA-HT-7684 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7686       TCGA-HT-7687       TCGA-HT-7689       TCGA-HT-7690 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7691       TCGA-HT-7692       TCGA-HT-7693       TCGA-HT-7694 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7695       TCGA-HT-7854       TCGA-HT-7855       TCGA-HT-7856 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7857       TCGA-HT-7858       TCGA-HT-7860       TCGA-HT-7873 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7874       TCGA-HT-7875       TCGA-HT-7877       TCGA-HT-7879 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7880       TCGA-HT-7881       TCGA-HT-7882       TCGA-HT-7884 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-7902       TCGA-HT-8010       TCGA-HT-8011       TCGA-HT-8012 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-8013       TCGA-HT-8015       TCGA-HT-8018       TCGA-HT-8019 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-8104       TCGA-HT-8105       TCGA-HT-8106       TCGA-HT-8107 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-8109       TCGA-HT-8110       TCGA-HT-8111       TCGA-HT-8113 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-8114       TCGA-HT-8558       TCGA-HT-8564       TCGA-HT-A4DV 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HT-A5R5       TCGA-HT-A5R7       TCGA-HT-A5R9       TCGA-HT-A5RB 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HW-7486       TCGA-HW-7487       TCGA-HW-7489       TCGA-HW-7490 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HW-7491       TCGA-HW-7495       TCGA-HW-8319       TCGA-HW-8320 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HW-8321       TCGA-HW-8322       TCGA-HW-A5KJ       TCGA-HW-A5KK 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-HW-A5KM       TCGA-IK-7675       TCGA-P5-A5ET       TCGA-P5-A5EU 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-P5-A5EV       TCGA-P5-A5EW       TCGA-P5-A5EX       TCGA-P5-A5EY 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-P5-A5EZ       TCGA-P5-A5F0       TCGA-P5-A5F1       TCGA-P5-A5F2 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
      TCGA-P5-A5F4       TCGA-P5-A5F6 
"LHFPL1 WILD-TYPE" "LHFPL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LHFPL1 MUTATED        0      0      1      3      0
  LHFPL1 WILD-TYPE    132    109    108    130     30
D136V7, multiclass
        clus
vv       LHFPL1 MUTATED LHFPL1 WILD-TYPE
  CLUS_1              0              132
  CLUS_2              0              109
  CLUS_3              1              108
  CLUS_4              3              130
  CLUS_5              0               30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LHFPL1 MUTATED        0      0      0      1      1      0      2
  LHFPL1 WILD-TYPE    134     71     36     65     90     41     72
D136V8, multiclass
        clus
vv       LHFPL1 MUTATED LHFPL1 WILD-TYPE
  CLUS_1              0              134
  CLUS_2              0               71
  CLUS_3              0               36
  CLUS_4              1               65
  CLUS_5              1               90
  CLUS_6              0               41
  CLUS_7              2               72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHFPL1 MUTATED        0      0      3      1
  LHFPL1 WILD-TYPE    136    107    180     82
D136V9, multiclass
        clus
vv       LHFPL1 MUTATED LHFPL1 WILD-TYPE
  CLUS_1              0              136
  CLUS_2              0              107
  CLUS_3              3              180
  CLUS_4              1               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LHFPL1 MUTATED        1      3      0
  LHFPL1 WILD-TYPE    221    181    103
D136V10, multiclass
        clus
vv       LHFPL1 MUTATED LHFPL1 WILD-TYPE
  CLUS_1              1              221
  CLUS_2              3              181
  CLUS_3              0              103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LHFPL1 MUTATED        0      1      3
  LHFPL1 WILD-TYPE    184    161    156
D136V11, multiclass
        clus
vv       LHFPL1 MUTATED LHFPL1 WILD-TYPE
  CLUS_1              0              184
  CLUS_2              1              161
  CLUS_3              3              156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHFPL1 MUTATED        0      1      3      0
  LHFPL1 WILD-TYPE     90    137    185     89
D136V12, multiclass
        clus
vv       LHFPL1 MUTATED LHFPL1 WILD-TYPE
  CLUS_1              0               90
  CLUS_2              1              137
  CLUS_3              3              185
  CLUS_4              0               89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(137) Variable = SLC10A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A7 MUTATED        0      0      0
  SLC10A7 WILD-TYPE      9     10      8
D137V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A7 MUTATED        0      0      0      0
  SLC10A7 WILD-TYPE      7      7      7      6
D137V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A7 MUTATED        1      1      1
  SLC10A7 WILD-TYPE    168    119    220
D137V3, multiclass
        clus
vv       SLC10A7 MUTATED SLC10A7 WILD-TYPE
  CLUS_1               1               168
  CLUS_2               1               119
  CLUS_3               1               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A7 MUTATED        2      1      0      0
  SLC10A7 WILD-TYPE    220     80    168     42
D137V4, multiclass
        clus
vv       SLC10A7 MUTATED SLC10A7 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1                80
  CLUS_3               0               168
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A7 MUTATED        0      0      1      0
  SLC10A7 WILD-TYPE     52     62     67     74
D137V5, multiclass
[1] "Remove cluster labels:" "SLC10A7 MUTATED"       
clus
  SLC10A7 MUTATED SLC10A7 WILD-TYPE 
                1               255 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6393 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7880        TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-8109        TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-8114        TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HW-7491        TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-P5-A5EY        TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-P5-A5F2        TCGA-P5-A5F4        TCGA-P5-A5F6 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A7 MUTATED        0      1      0
  SLC10A7 WILD-TYPE     67    130     58
D137V6, multiclass
[1] "Remove cluster labels:" "SLC10A7 MUTATED"       
clus
  SLC10A7 MUTATED SLC10A7 WILD-TYPE 
                1               255 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6393 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7468        TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7857        TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7874        TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7880        TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-7902        TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-8013        TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-8104        TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-8109        TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-8114        TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HT-A5R5        TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HW-7486        TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HW-7491        TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HW-8321        TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-HW-A5KM        TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-P5-A5EU        TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-P5-A5EY        TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
       TCGA-P5-A5F2        TCGA-P5-A5F4        TCGA-P5-A5F6 
"SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" "SLC10A7 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC10A7 MUTATED        2      1      0      0      0
  SLC10A7 WILD-TYPE    130    108    109    133     30
D137V7, multiclass
        clus
vv       SLC10A7 MUTATED SLC10A7 WILD-TYPE
  CLUS_1               2               130
  CLUS_2               1               108
  CLUS_3               0               109
  CLUS_4               0               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC10A7 MUTATED        2      0      0      0      0      1      0
  SLC10A7 WILD-TYPE    132     71     36     66     91     40     74
D137V8, multiclass
        clus
vv       SLC10A7 MUTATED SLC10A7 WILD-TYPE
  CLUS_1               2               132
  CLUS_2               0                71
  CLUS_3               0                36
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A7 MUTATED        1      2      0      0
  SLC10A7 WILD-TYPE    135    105    183     83
D137V9, multiclass
        clus
vv       SLC10A7 MUTATED SLC10A7 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               2               105
  CLUS_3               0               183
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A7 MUTATED        2      0      1
  SLC10A7 WILD-TYPE    220    184    102
D137V10, multiclass
        clus
vv       SLC10A7 MUTATED SLC10A7 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               0               184
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A7 MUTATED        1      1      1
  SLC10A7 WILD-TYPE    183    161    158
D137V11, multiclass
        clus
vv       SLC10A7 MUTATED SLC10A7 WILD-TYPE
  CLUS_1               1               183
  CLUS_2               1               161
  CLUS_3               1               158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A7 MUTATED        1      1      1      0
  SLC10A7 WILD-TYPE     89    137    187     89
D137V12, multiclass
        clus
vv       SLC10A7 MUTATED SLC10A7 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               1               137
  CLUS_3               1               187
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(138) Variable = CXCR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR2 MUTATED        0      0      0
  CXCR2 WILD-TYPE      9     10      8
D138V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR2 MUTATED        0      0      0      0
  CXCR2 WILD-TYPE      7      7      7      6
D138V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR2 MUTATED        2      0      2
  CXCR2 WILD-TYPE    167    120    219
D138V3, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             2             167
  CLUS_2             0             120
  CLUS_3             2             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR2 MUTATED        3      0      1      0
  CXCR2 WILD-TYPE    219     81    167     42
D138V4, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             3             219
  CLUS_2             0              81
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR2 MUTATED        1      0      2      1
  CXCR2 WILD-TYPE     51     62     66     73
D138V5, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              62
  CLUS_3             2              66
  CLUS_4             1              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR2 MUTATED        1      2      1
  CXCR2 WILD-TYPE     66    129     57
D138V6, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2             129
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CXCR2 MUTATED        2      0      0      2      0
  CXCR2 WILD-TYPE    130    109    109    131     30
D138V7, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             2             130
  CLUS_2             0             109
  CLUS_3             0             109
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CXCR2 MUTATED        1      0      0      0      0      1      2
  CXCR2 WILD-TYPE    133     71     36     66     91     40     72
D138V8, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             0              66
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR2 MUTATED        1      1      2      0
  CXCR2 WILD-TYPE    135    106    181     83
D138V9, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             1             106
  CLUS_3             2             181
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR2 MUTATED        1      2      1
  CXCR2 WILD-TYPE    221    182    102
D138V10, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2             182
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR2 MUTATED        0      1      3
  CXCR2 WILD-TYPE    184    161    156
D138V11, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             161
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR2 MUTATED        1      0      3      0
  CXCR2 WILD-TYPE     89    138    185     89
D138V12, multiclass
        clus
vv       CXCR2 MUTATED CXCR2 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             0             138
  CLUS_3             3             185
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(139) Variable = SEC14L4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L4 MUTATED        0      0      0
  SEC14L4 WILD-TYPE      9     10      8
D139V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L4 MUTATED        0      0      0      0
  SEC14L4 WILD-TYPE      7      7      7      6
D139V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L4 MUTATED        2      0      1
  SEC14L4 WILD-TYPE    167    120    220
D139V3, multiclass
        clus
vv       SEC14L4 MUTATED SEC14L4 WILD-TYPE
  CLUS_1               2               167
  CLUS_2               0               120
  CLUS_3               1               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L4 MUTATED        2      1      0      0
  SEC14L4 WILD-TYPE    220     80    168     42
D139V4, multiclass
        clus
vv       SEC14L4 MUTATED SEC14L4 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1                80
  CLUS_3               0               168
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L4 MUTATED        0      1      1      0
  SEC14L4 WILD-TYPE     52     61     67     74
D139V5, multiclass
[1] "Remove cluster labels:" "SEC14L4 MUTATED"       
clus
  SEC14L4 MUTATED SEC14L4 WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-5962        TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-7634        TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-7641        TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-8185        TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-8189        TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7470        TCGA-HT-7471 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7857        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L4 MUTATED        1      1      0
  SEC14L4 WILD-TYPE     66    130     58
D139V6, multiclass
[1] "Remove cluster labels:" "SEC14L4 MUTATED"       
clus
  SEC14L4 MUTATED SEC14L4 WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6665 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-CS-6666        TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-5270        TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-5276        TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-5280        TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-A4XB        TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DB-A4XF        TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143        TCGA-DH-5144 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-5847        TCGA-DU-5849        TCGA-DU-5851        TCGA-DU-5852 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-5853        TCGA-DU-5854        TCGA-DU-5855        TCGA-DU-5870 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-5871        TCGA-DU-5872        TCGA-DU-5874        TCGA-DU-6392 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6393        TCGA-DU-6394        TCGA-DU-6395        TCGA-DU-6396 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6397        TCGA-DU-6399        TCGA-DU-6400        TCGA-DU-6401 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6402        TCGA-DU-6403        TCGA-DU-6404        TCGA-DU-6405 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6406        TCGA-DU-6407        TCGA-DU-6408        TCGA-DU-6410 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-6542        TCGA-DU-7006        TCGA-DU-7007        TCGA-DU-7008 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7009        TCGA-DU-7010        TCGA-DU-7011        TCGA-DU-7012 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7013        TCGA-DU-7015        TCGA-DU-7018        TCGA-DU-7019 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7290        TCGA-DU-7292        TCGA-DU-7294        TCGA-DU-7298 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7300        TCGA-DU-7301        TCGA-DU-7302        TCGA-DU-7304 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-7306        TCGA-DU-7309        TCGA-DU-8158        TCGA-DU-8161 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-8162        TCGA-DU-8163        TCGA-DU-8164        TCGA-DU-8165 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-8166        TCGA-DU-8167        TCGA-DU-8168        TCGA-DU-A5TP 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-A5TR        TCGA-DU-A5TS        TCGA-DU-A5TT        TCGA-DU-A5TU 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-DU-A5TW        TCGA-DU-A5TY        TCGA-E1-5302        TCGA-E1-5303 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-E1-5304        TCGA-E1-5305        TCGA-E1-5307        TCGA-E1-5311 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5319        TCGA-E1-5322        TCGA-EZ-7264 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-5962        TCGA-FG-5963        TCGA-FG-5964        TCGA-FG-5965 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-6688        TCGA-FG-6689        TCGA-FG-6690        TCGA-FG-6691 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-7634        TCGA-FG-7636        TCGA-FG-7637        TCGA-FG-7638 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-7641        TCGA-FG-7643        TCGA-FG-8181        TCGA-FG-8182 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-8185        TCGA-FG-8186        TCGA-FG-8187        TCGA-FG-8188 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-8189        TCGA-FG-8191        TCGA-FG-A4MT        TCGA-FG-A4MU 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-FG-A4MW        TCGA-FG-A4MX        TCGA-FG-A4MY        TCGA-FG-A60J 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7467        TCGA-HT-7468        TCGA-HT-7470        TCGA-HT-7471 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7472        TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7476        TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7480        TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7485        TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7604        TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7608        TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7616        TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7680        TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7687        TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7691        TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7695        TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7857        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"SEC14L4 WILD-TYPE" "SEC14L4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC14L4 MUTATED        1      2      0      0      0
  SEC14L4 WILD-TYPE    131    107    109    133     30
D139V7, multiclass
        clus
vv       SEC14L4 MUTATED SEC14L4 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               2               107
  CLUS_3               0               109
  CLUS_4               0               133
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEC14L4 MUTATED        1      1      0      0      0      1      0
  SEC14L4 WILD-TYPE    133     70     36     66     91     40     74
D139V8, multiclass
        clus
vv       SEC14L4 MUTATED SEC14L4 WILD-TYPE
  CLUS_1               1               133
  CLUS_2               1                70
  CLUS_3               0                36
  CLUS_4               0                66
  CLUS_5               0                91
  CLUS_6               1                40
  CLUS_7               0                74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L4 MUTATED        1      2      0      0
  SEC14L4 WILD-TYPE    135    105    183     83
D139V9, multiclass
        clus
vv       SEC14L4 MUTATED SEC14L4 WILD-TYPE
  CLUS_1               1               135
  CLUS_2               2               105
  CLUS_3               0               183
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L4 MUTATED        1      0      2
  SEC14L4 WILD-TYPE    221    184    101
D139V10, multiclass
        clus
vv       SEC14L4 MUTATED SEC14L4 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               0               184
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L4 MUTATED        3      0      0
  SEC14L4 WILD-TYPE    181    162    159
D139V11, multiclass
        clus
vv       SEC14L4 MUTATED SEC14L4 WILD-TYPE
  CLUS_1               3               181
  CLUS_2               0               162
  CLUS_3               0               159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L4 MUTATED        1      0      0      2
  SEC14L4 WILD-TYPE     89    138    188     87
D139V12, multiclass
        clus
vv       SEC14L4 MUTATED SEC14L4 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               0               138
  CLUS_3               0               188
  CLUS_4               2                87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(140) Variable = ANKRD17 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED        0      0      0
  ANKRD17 WILD-TYPE      9     10      8
D140V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        0      0      0      0
  ANKRD17 WILD-TYPE      7      7      7      6
D140V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED        0      2      4
  ANKRD17 WILD-TYPE    169    118    217
D140V3, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               0               169
  CLUS_2               2               118
  CLUS_3               4               217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        1      1      4      0
  ANKRD17 WILD-TYPE    221     80    164     42
D140V4, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               1               221
  CLUS_2               1                80
  CLUS_3               4               164
  CLUS_4               0                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        0      0      2      2
  ANKRD17 WILD-TYPE     52     62     66     72
D140V5, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               0                62
  CLUS_3               2                66
  CLUS_4               2                72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED        0      2      2
  ANKRD17 WILD-TYPE     67    129     56
D140V6, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               0                67
  CLUS_2               2               129
  CLUS_3               2                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD17 MUTATED        1      1      2      2      0
  ANKRD17 WILD-TYPE    131    108    107    131     30
D140V7, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               1               131
  CLUS_2               1               108
  CLUS_3               2               107
  CLUS_4               2               131
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD17 MUTATED        1      0      1      0      1      1      2
  ANKRD17 WILD-TYPE    133     71     35     66     90     40     72
D140V8, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               1               133
  CLUS_2               0                71
  CLUS_3               1                35
  CLUS_4               0                66
  CLUS_5               1                90
  CLUS_6               1                40
  CLUS_7               2                72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        2      1      3      0
  ANKRD17 WILD-TYPE    134    106    180     83
D140V9, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               2               134
  CLUS_2               1               106
  CLUS_3               3               180
  CLUS_4               0                83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED        2      3      1
  ANKRD17 WILD-TYPE    220    181    102
D140V10, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               3               181
  CLUS_3               1               102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED        0      2      4
  ANKRD17 WILD-TYPE    184    160    155
D140V11, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               0               184
  CLUS_2               2               160
  CLUS_3               4               155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        1      1      4      0
  ANKRD17 WILD-TYPE     89    137    184     89
D140V12, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               1                89
  CLUS_2               1               137
  CLUS_3               4               184
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(141) Variable = MAST3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST3 MUTATED        0      0      0
  MAST3 WILD-TYPE      9     10      8
D141V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST3 MUTATED        0      0      0      0
  MAST3 WILD-TYPE      7      7      7      6
D141V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST3 MUTATED        1      1      3
  MAST3 WILD-TYPE    168    119    218
D141V3, multiclass
        clus
vv       MAST3 MUTATED MAST3 WILD-TYPE
  CLUS_1             1             168
  CLUS_2             1             119
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST3 MUTATED        1      1      2      1
  MAST3 WILD-TYPE    221     80    166     41
D141V4, multiclass
        clus
vv       MAST3 MUTATED MAST3 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             2             166
  CLUS_4             1              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST3 MUTATED        0      0      0      2
  MAST3 WILD-TYPE     52     62     68     72
D141V5, multiclass
[1] "Remove cluster labels:" "MAST3 MUTATED"         
clus
  MAST3 MUTATED MAST3 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7467      TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7471      TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7479      TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7483      TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7603      TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7611      TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7677      TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7686      TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7690      TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7694      TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7902 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST3 MUTATED        1      0      1
  MAST3 WILD-TYPE     66    131     57
D141V6, multiclass
[1] "Remove cluster labels:" "MAST3 MUTATED"         
clus
  MAST3 MUTATED MAST3 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MT      TCGA-FG-A4MU 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-FG-A4MW      TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7467      TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7471      TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7475      TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7479      TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7483      TCGA-HT-7485      TCGA-HT-7601      TCGA-HT-7602 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7603      TCGA-HT-7604      TCGA-HT-7605      TCGA-HT-7606 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7607      TCGA-HT-7608      TCGA-HT-7609      TCGA-HT-7610 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7611      TCGA-HT-7616      TCGA-HT-7620      TCGA-HT-7676 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7677      TCGA-HT-7680      TCGA-HT-7681      TCGA-HT-7684 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7686      TCGA-HT-7687      TCGA-HT-7688      TCGA-HT-7689 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7690      TCGA-HT-7691      TCGA-HT-7692      TCGA-HT-7693 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7694      TCGA-HT-7695      TCGA-HT-7854      TCGA-HT-7855 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7857      TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7874      TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-7880      TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7902 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"MAST3 WILD-TYPE" "MAST3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAST3 MUTATED        0      1      1      2      1
  MAST3 WILD-TYPE    132    108    108    131     29
D141V7, multiclass
        clus
vv       MAST3 MUTATED MAST3 WILD-TYPE
  CLUS_1             0             132
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             2             131
  CLUS_5             1              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAST3 MUTATED        0      1      0      1      1      0      2
  MAST3 WILD-TYPE    134     70     36     65     90     41     72
D141V8, multiclass
        clus
vv       MAST3 MUTATED MAST3 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             1              70
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             1              90
  CLUS_6             0              41
  CLUS_7             2              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST3 MUTATED        0      1      3      1
  MAST3 WILD-TYPE    136    106    180     82
D141V9, multiclass
        clus
vv       MAST3 MUTATED MAST3 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             1             106
  CLUS_3             3             180
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST3 MUTATED        1      3      1
  MAST3 WILD-TYPE    221    181    102
D141V10, multiclass
        clus
vv       MAST3 MUTATED MAST3 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             3             181
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAST3 MUTATED        1      1      3
  MAST3 WILD-TYPE    183    161    156
D141V11, multiclass
        clus
vv       MAST3 MUTATED MAST3 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             1             161
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAST3 MUTATED        0      1      3      1
  MAST3 WILD-TYPE     90    137    185     88
D141V12, multiclass
        clus
vv       MAST3 MUTATED MAST3 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             1             137
  CLUS_3             3             185
  CLUS_4             1              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(142) Variable = AMMECR1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AMMECR1 MUTATED        0      1      0
  AMMECR1 WILD-TYPE      9      9      8
D142V1, multiclass
[1] "Remove cluster labels:" "AMMECR1 MUTATED"       
clus
  AMMECR1 MUTATED AMMECR1 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DH-5140        TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMMECR1 MUTATED        0      0      1      0
  AMMECR1 WILD-TYPE      7      7      6      6
D142V2, multiclass
[1] "Remove cluster labels:" "AMMECR1 MUTATED"       
clus
  AMMECR1 MUTATED AMMECR1 WILD-TYPE 
                1                26 
       TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944        TCGA-CS-5390 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-CS-5394        TCGA-CS-5395        TCGA-CS-5396        TCGA-DB-5270 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5280        TCGA-DB-5281 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DH-5140        TCGA-DH-5141        TCGA-DH-5142        TCGA-DH-5143 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5311 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5318        TCGA-E1-5322 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AMMECR1 MUTATED        3      0      2
  AMMECR1 WILD-TYPE    166    120    219
D142V3, multiclass
        clus
vv       AMMECR1 MUTATED AMMECR1 WILD-TYPE
  CLUS_1               3               166
  CLUS_2               0               120
  CLUS_3               2               219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMMECR1 MUTATED        2      0      2      1
  AMMECR1 WILD-TYPE    220     81    166     41
D142V4, multiclass
        clus
vv       AMMECR1 MUTATED AMMECR1 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               0                81
  CLUS_3               2               166
  CLUS_4               1                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMMECR1 MUTATED        1      0      1      0
  AMMECR1 WILD-TYPE     51     62     67     74
D142V5, multiclass
[1] "Remove cluster labels:" "AMMECR1 MUTATED"       
clus
  AMMECR1 MUTATED AMMECR1 WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6666 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670        TCGA-DB-5270 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279        TCGA-DB-5280 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA        TCGA-DB-A4XB 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE        TCGA-DB-A4XF 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140        TCGA-DH-5141 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DU-5847        TCGA-DU-5849 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853        TCGA-DU-5854 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871        TCGA-DU-5872 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-5874        TCGA-DU-6392        TCGA-DU-6393        TCGA-DU-6394 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397        TCGA-DU-6399 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402        TCGA-DU-6403 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406        TCGA-DU-6407 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542        TCGA-DU-7006 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009        TCGA-DU-7010 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013        TCGA-DU-7015 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290        TCGA-DU-7292 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300        TCGA-DU-7301 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166        TCGA-DU-8167 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR        TCGA-DU-A5TS 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A5TY 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962        TCGA-FG-5963 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634        TCGA-FG-7636 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641        TCGA-FG-7643 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185        TCGA-FG-8186 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-8191 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467        TCGA-HT-7468 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AMMECR1 MUTATED        1      1      0
  AMMECR1 WILD-TYPE     66    130     58
D142V6, multiclass
[1] "Remove cluster labels:" "AMMECR1 MUTATED"       
clus
  AMMECR1 MUTATED AMMECR1 WILD-TYPE 
                2               254 
       TCGA-CS-4938        TCGA-CS-4942        TCGA-CS-4943        TCGA-CS-4944 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-CS-5390        TCGA-CS-5393        TCGA-CS-5394        TCGA-CS-5396 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-CS-5397        TCGA-CS-6186        TCGA-CS-6188        TCGA-CS-6666 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-CS-6668        TCGA-CS-6669        TCGA-CS-6670        TCGA-DB-5270 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5273        TCGA-DB-5274        TCGA-DB-5275        TCGA-DB-5276 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5277        TCGA-DB-5278        TCGA-DB-5279        TCGA-DB-5280 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-5281        TCGA-DB-A4X9        TCGA-DB-A4XA        TCGA-DB-A4XB 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-A4XC        TCGA-DB-A4XD        TCGA-DB-A4XE        TCGA-DB-A4XF 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DB-A4XG        TCGA-DB-A4XH        TCGA-DH-5140        TCGA-DH-5141 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DH-5142        TCGA-DH-5143        TCGA-DU-5847        TCGA-DU-5849 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-5851        TCGA-DU-5852        TCGA-DU-5853        TCGA-DU-5854 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-5855        TCGA-DU-5870        TCGA-DU-5871        TCGA-DU-5872 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-5874        TCGA-DU-6392        TCGA-DU-6393        TCGA-DU-6394 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-6395        TCGA-DU-6396        TCGA-DU-6397        TCGA-DU-6399 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-6400        TCGA-DU-6401        TCGA-DU-6402        TCGA-DU-6403 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-6404        TCGA-DU-6405        TCGA-DU-6406        TCGA-DU-6407 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-6408        TCGA-DU-6410        TCGA-DU-6542        TCGA-DU-7006 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7007        TCGA-DU-7008        TCGA-DU-7009        TCGA-DU-7010 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7011        TCGA-DU-7012        TCGA-DU-7013        TCGA-DU-7015 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7018        TCGA-DU-7019        TCGA-DU-7290        TCGA-DU-7292 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7294        TCGA-DU-7298        TCGA-DU-7300        TCGA-DU-7301 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-7302        TCGA-DU-7304        TCGA-DU-7306        TCGA-DU-7309 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-8158        TCGA-DU-8161        TCGA-DU-8162        TCGA-DU-8163 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-8164        TCGA-DU-8165        TCGA-DU-8166        TCGA-DU-8167 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-8168        TCGA-DU-A5TP        TCGA-DU-A5TR        TCGA-DU-A5TS 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-DU-A5TT        TCGA-DU-A5TU        TCGA-DU-A5TW        TCGA-DU-A5TY 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5302        TCGA-E1-5303        TCGA-E1-5304        TCGA-E1-5305 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5307        TCGA-E1-5311        TCGA-E1-5318        TCGA-E1-5319 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-E1-5322        TCGA-EZ-7264        TCGA-FG-5962        TCGA-FG-5963 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-5964        TCGA-FG-5965        TCGA-FG-6688        TCGA-FG-6689 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-6690        TCGA-FG-6691        TCGA-FG-7634        TCGA-FG-7636 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-7637        TCGA-FG-7638        TCGA-FG-7641        TCGA-FG-7643 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-8181        TCGA-FG-8182        TCGA-FG-8185        TCGA-FG-8186 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-8187        TCGA-FG-8188        TCGA-FG-8189        TCGA-FG-8191 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-A4MT        TCGA-FG-A4MU        TCGA-FG-A4MW        TCGA-FG-A4MX 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-FG-A4MY        TCGA-FG-A60J        TCGA-HT-7467        TCGA-HT-7468 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7469        TCGA-HT-7470        TCGA-HT-7471        TCGA-HT-7472 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7473        TCGA-HT-7474        TCGA-HT-7475        TCGA-HT-7476 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7477        TCGA-HT-7478        TCGA-HT-7479        TCGA-HT-7480 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7481        TCGA-HT-7482        TCGA-HT-7483        TCGA-HT-7485 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7601        TCGA-HT-7602        TCGA-HT-7603        TCGA-HT-7604 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7605        TCGA-HT-7606        TCGA-HT-7607        TCGA-HT-7608 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7609        TCGA-HT-7610        TCGA-HT-7611        TCGA-HT-7616 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7620        TCGA-HT-7676        TCGA-HT-7677        TCGA-HT-7680 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7681        TCGA-HT-7684        TCGA-HT-7686        TCGA-HT-7687 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7688        TCGA-HT-7689        TCGA-HT-7690        TCGA-HT-7691 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7692        TCGA-HT-7693        TCGA-HT-7694        TCGA-HT-7695 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7854        TCGA-HT-7855        TCGA-HT-7856        TCGA-HT-7857 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7858        TCGA-HT-7860        TCGA-HT-7873        TCGA-HT-7874 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7875        TCGA-HT-7877        TCGA-HT-7879        TCGA-HT-7880 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-7881        TCGA-HT-7882        TCGA-HT-7884        TCGA-HT-7902 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8010        TCGA-HT-8011        TCGA-HT-8012        TCGA-HT-8013 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8015        TCGA-HT-8018        TCGA-HT-8019        TCGA-HT-8104 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8105        TCGA-HT-8106        TCGA-HT-8107        TCGA-HT-8109 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8110        TCGA-HT-8111        TCGA-HT-8113        TCGA-HT-8114 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-8558        TCGA-HT-8564        TCGA-HT-A4DV        TCGA-HT-A5R5 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HT-A5R7        TCGA-HT-A5R9        TCGA-HT-A5RB        TCGA-HW-7486 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HW-7487        TCGA-HW-7489        TCGA-HW-7490        TCGA-HW-7491 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HW-7495        TCGA-HW-8319        TCGA-HW-8320        TCGA-HW-8321 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-HW-8322        TCGA-HW-A5KJ        TCGA-HW-A5KK        TCGA-HW-A5KM 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-IK-7675        TCGA-IK-8125        TCGA-P5-A5ET        TCGA-P5-A5EU 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-P5-A5EV        TCGA-P5-A5EW        TCGA-P5-A5EX        TCGA-P5-A5EY 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-P5-A5EZ        TCGA-P5-A5F0        TCGA-P5-A5F1        TCGA-P5-A5F2 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
       TCGA-P5-A5F4        TCGA-P5-A5F6 
"AMMECR1 WILD-TYPE" "AMMECR1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMMECR1 MUTATED        0      2      2      1      0
  AMMECR1 WILD-TYPE    132    107    107    132     30
D142V7, multiclass
        clus
vv       AMMECR1 MUTATED AMMECR1 WILD-TYPE
  CLUS_1               0               132
  CLUS_2               2               107
  CLUS_3               2               107
  CLUS_4               1               132
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMMECR1 MUTATED        0      0      1      0      1      2      1
  AMMECR1 WILD-TYPE    134     71     35     66     90     39     73
D142V8, multiclass
        clus
vv       AMMECR1 MUTATED AMMECR1 WILD-TYPE
  CLUS_1               0               134
  CLUS_2               0                71
  CLUS_3               1                35
  CLUS_4               0                66
  CLUS_5               1                90
  CLUS_6               2                39
  CLUS_7               1                73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMMECR1 MUTATED        0      2      1      2
  AMMECR1 WILD-TYPE    136    105    182     81
D142V9, multiclass
        clus
vv       AMMECR1 MUTATED AMMECR1 WILD-TYPE
  CLUS_1               0               136
  CLUS_2               2               105
  CLUS_3               1               182
  CLUS_4               2                81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AMMECR1 MUTATED        2      1      2
  AMMECR1 WILD-TYPE    220    183    101
D142V10, multiclass
        clus
vv       AMMECR1 MUTATED AMMECR1 WILD-TYPE
  CLUS_1               2               220
  CLUS_2               1               183
  CLUS_3               2               101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AMMECR1 MUTATED        0      3      2
  AMMECR1 WILD-TYPE    184    159    157
D142V11, multiclass
        clus
vv       AMMECR1 MUTATED AMMECR1 WILD-TYPE
  CLUS_1               0               184
  CLUS_2               3               159
  CLUS_3               2               157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMMECR1 MUTATED        0      3      2      0
  AMMECR1 WILD-TYPE     90    135    186     89
D142V12, multiclass
        clus
vv       AMMECR1 MUTATED AMMECR1 WILD-TYPE
  CLUS_1               0                90
  CLUS_2               3               135
  CLUS_3               2               186
  CLUS_4               0                89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(143) Variable = NEO1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEO1 MUTATED        0      0      1
  NEO1 WILD-TYPE      9     10      7
D143V1, multiclass
[1] "Remove cluster labels:" "NEO1 MUTATED"          
clus
  NEO1 MUTATED NEO1 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5273 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEO1 MUTATED        0      0      0      1
  NEO1 WILD-TYPE      7      7      7      5
D143V2, multiclass
[1] "Remove cluster labels:" "NEO1 MUTATED"          
clus
  NEO1 MUTATED NEO1 WILD-TYPE 
             1             26 
    TCGA-CS-4942     TCGA-CS-4943     TCGA-CS-4944     TCGA-CS-5390 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-CS-5394     TCGA-CS-5395     TCGA-CS-5396     TCGA-DB-5273 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-DB-5274     TCGA-DB-5275     TCGA-DB-5276     TCGA-DB-5277 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-DB-5278     TCGA-DB-5280     TCGA-DB-5281     TCGA-DH-5140 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-DH-5141     TCGA-DH-5142     TCGA-DH-5143     TCGA-DH-5144 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-E1-5302     TCGA-E1-5303     TCGA-E1-5304     TCGA-E1-5311 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
    TCGA-E1-5318     TCGA-E1-5322 
"NEO1 WILD-TYPE" "NEO1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEO1 MUTATED        2      2      3
  NEO1 WILD-TYPE    167    118    218
D143V3, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            2            167
  CLUS_2            2            118
  CLUS_3            3            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEO1 MUTATED        2      1      3      1
  NEO1 WILD-TYPE    220     80    165     41
D143V4, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            1             80
  CLUS_3            3            165
  CLUS_4            1             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEO1 MUTATED        0      0      2      2
  NEO1 WILD-TYPE     52     62     66     72
D143V5, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            0             62
  CLUS_3            2             66
  CLUS_4            2             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEO1 MUTATED        0      2      2
  NEO1 WILD-TYPE     67    129     56
D143V6, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            2            129
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEO1 MUTATED        1      1      2      2      1
  NEO1 WILD-TYPE    131    108    107    131     29
D143V7, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            1            108
  CLUS_3            2            107
  CLUS_4            2            131
  CLUS_5            1             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEO1 MUTATED        2      0      1      1      1      1      1
  NEO1 WILD-TYPE    132     71     35     65     90     40     73
D143V8, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            2            132
  CLUS_2            0             71
  CLUS_3            1             35
  CLUS_4            1             65
  CLUS_5            1             90
  CLUS_6            1             40
  CLUS_7            1             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEO1 MUTATED        2      2      3      0
  NEO1 WILD-TYPE    134    105    180     83
D143V9, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            2            134
  CLUS_2            2            105
  CLUS_3            3            180
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEO1 MUTATED        3      3      1
  NEO1 WILD-TYPE    219    181    102
D143V10, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            3            219
  CLUS_2            3            181
  CLUS_3            1            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEO1 MUTATED        0      2      5
  NEO1 WILD-TYPE    184    160    154
D143V11, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            0            184
  CLUS_2            2            160
  CLUS_3            5            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEO1 MUTATED        0      3      4      0
  NEO1 WILD-TYPE     90    135    184     89
D143V12, multiclass
        clus
vv       NEO1 MUTATED NEO1 WILD-TYPE
  CLUS_1            0             90
  CLUS_2            3            135
  CLUS_3            4            184
  CLUS_4            0             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(144) Variable = IGSF8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF8 MUTATED        0      0      0
  IGSF8 WILD-TYPE      9     10      8
D144V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF8 MUTATED        0      0      0      0
  IGSF8 WILD-TYPE      7      7      7      6
D144V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF8 MUTATED        0      1      3
  IGSF8 WILD-TYPE    169    119    218
D144V3, multiclass
        clus
vv       IGSF8 MUTATED IGSF8 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             1             119
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF8 MUTATED        1      1      2      0
  IGSF8 WILD-TYPE    221     80    166     42
D144V4, multiclass
        clus
vv       IGSF8 MUTATED IGSF8 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             1              80
  CLUS_3             2             166
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF8 MUTATED        0      1      1      0
  IGSF8 WILD-TYPE     52     61     67     74
D144V5, multiclass
[1] "Remove cluster labels:" "IGSF8 MUTATED"         
clus
  IGSF8 MUTATED IGSF8 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF8 MUTATED        0      1      1
  IGSF8 WILD-TYPE     67    130     57
D144V6, multiclass
[1] "Remove cluster labels:" "IGSF8 MUTATED"         
clus
  IGSF8 MUTATED IGSF8 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6393 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396      TCGA-DU-6397 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401      TCGA-DU-6402 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405      TCGA-DU-6406 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410      TCGA-DU-6542 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008      TCGA-DU-7009 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012      TCGA-DU-7013 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019      TCGA-DU-7290 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298      TCGA-DU-7300 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304      TCGA-DU-7306 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161      TCGA-DU-8162 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165      TCGA-DU-8166 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP      TCGA-DU-A5TR 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU      TCGA-DU-A5TW 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303      TCGA-E1-5304 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311      TCGA-E1-5318 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264      TCGA-FG-5962 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965      TCGA-FG-6688 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691      TCGA-FG-7634 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-7637      TCGA-FG-7638      TCGA-FG-7641      TCGA-FG-7643 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-8181      TCGA-FG-8182      TCGA-FG-8185      TCGA-FG-8186 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-8187      TCGA-FG-8188      TCGA-FG-8189      TCGA-FG-8191 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-A4MT      TCGA-FG-A4MU      TCGA-FG-A4MW      TCGA-FG-A4MX 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467      TCGA-HT-7468 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471      TCGA-HT-7472 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475      TCGA-HT-7476 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479      TCGA-HT-7480 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7483      TCGA-HT-7485 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"IGSF8 WILD-TYPE" "IGSF8 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF8 MUTATED        1      1      1      1      0
  IGSF8 WILD-TYPE    131    108    108    132     30
D144V7, multiclass
        clus
vv       IGSF8 MUTATED IGSF8 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             1             108
  CLUS_3             1             108
  CLUS_4             1             132
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGSF8 MUTATED        0      0      2      1      0      1      0
  IGSF8 WILD-TYPE    134     71     34     65     91     40     74
D144V8, multiclass
        clus
vv       IGSF8 MUTATED IGSF8 WILD-TYPE
  CLUS_1             0             134
  CLUS_2             0              71
  CLUS_3             2              34
  CLUS_4             1              65
  CLUS_5             0              91
  CLUS_6             1              40
  CLUS_7             0              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF8 MUTATED        0      2      2      0
  IGSF8 WILD-TYPE    136    105    181     83
D144V9, multiclass
        clus
vv       IGSF8 MUTATED IGSF8 WILD-TYPE
  CLUS_1             0             136
  CLUS_2             2             105
  CLUS_3             2             181
  CLUS_4             0              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF8 MUTATED        0      3      1
  IGSF8 WILD-TYPE    222    181    102
D144V10, multiclass
        clus
vv       IGSF8 MUTATED IGSF8 WILD-TYPE
  CLUS_1             0             222
  CLUS_2             3             181
  CLUS_3             1             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF8 MUTATED        0      1      3
  IGSF8 WILD-TYPE    184    161    156
D144V11, multiclass
        clus
vv       IGSF8 MUTATED IGSF8 WILD-TYPE
  CLUS_1             0             184
  CLUS_2             1             161
  CLUS_3             3             156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF8 MUTATED        0      0      4      0
  IGSF8 WILD-TYPE     90    138    184     89
D144V12, multiclass
        clus
vv       IGSF8 MUTATED IGSF8 WILD-TYPE
  CLUS_1             0              90
  CLUS_2             0             138
  CLUS_3             4             184
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(145) Variable = PACS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS1 MUTATED        0      0      0
  PACS1 WILD-TYPE      9     10      8
D145V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS1 MUTATED        0      0      0      0
  PACS1 WILD-TYPE      7      7      7      6
D145V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS1 MUTATED        0      0      3
  PACS1 WILD-TYPE    169    120    218
D145V3, multiclass
        clus
vv       PACS1 MUTATED PACS1 WILD-TYPE
  CLUS_1             0             169
  CLUS_2             0             120
  CLUS_3             3             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS1 MUTATED        2      0      1      0
  PACS1 WILD-TYPE    220     81    167     42
D145V4, multiclass
        clus
vv       PACS1 MUTATED PACS1 WILD-TYPE
  CLUS_1             2             220
  CLUS_2             0              81
  CLUS_3             1             167
  CLUS_4             0              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS1 MUTATED        0      1      1      0
  PACS1 WILD-TYPE     52     61     67     74
D145V5, multiclass
[1] "Remove cluster labels:" "PACS1 MUTATED"         
clus
  PACS1 MUTATED PACS1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MU      TCGA-FG-A4MW 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS1 MUTATED        0      2      0
  PACS1 WILD-TYPE     67    129     58
D145V6, multiclass
[1] "Remove cluster labels:" "PACS1 MUTATED"         
clus
  PACS1 MUTATED PACS1 WILD-TYPE 
              2             254 
     TCGA-CS-4938      TCGA-CS-4942      TCGA-CS-4943      TCGA-CS-4944 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-CS-5390      TCGA-CS-5393      TCGA-CS-5394      TCGA-CS-5396 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-CS-5397      TCGA-CS-6186      TCGA-CS-6188      TCGA-CS-6665 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-CS-6666      TCGA-CS-6668      TCGA-CS-6669      TCGA-CS-6670 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-5270      TCGA-DB-5273      TCGA-DB-5274      TCGA-DB-5275 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-5276      TCGA-DB-5277      TCGA-DB-5278      TCGA-DB-5279 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-5280      TCGA-DB-5281      TCGA-DB-A4X9      TCGA-DB-A4XA 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-A4XB      TCGA-DB-A4XC      TCGA-DB-A4XD      TCGA-DB-A4XE 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DB-A4XF      TCGA-DB-A4XG      TCGA-DB-A4XH      TCGA-DH-5140 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DH-5141      TCGA-DH-5142      TCGA-DH-5143      TCGA-DH-5144 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-5847      TCGA-DU-5849      TCGA-DU-5851      TCGA-DU-5852 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-5853      TCGA-DU-5854      TCGA-DU-5855      TCGA-DU-5870 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-5871      TCGA-DU-5872      TCGA-DU-5874      TCGA-DU-6392 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6393      TCGA-DU-6394      TCGA-DU-6395      TCGA-DU-6396 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6397      TCGA-DU-6399      TCGA-DU-6400      TCGA-DU-6401 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6402      TCGA-DU-6403      TCGA-DU-6404      TCGA-DU-6405 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6406      TCGA-DU-6407      TCGA-DU-6408      TCGA-DU-6410 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-6542      TCGA-DU-7006      TCGA-DU-7007      TCGA-DU-7008 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7009      TCGA-DU-7010      TCGA-DU-7011      TCGA-DU-7012 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7013      TCGA-DU-7015      TCGA-DU-7018      TCGA-DU-7019 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7290      TCGA-DU-7292      TCGA-DU-7294      TCGA-DU-7298 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7300      TCGA-DU-7301      TCGA-DU-7302      TCGA-DU-7304 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-7306      TCGA-DU-7309      TCGA-DU-8158      TCGA-DU-8161 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-8162      TCGA-DU-8163      TCGA-DU-8164      TCGA-DU-8165 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-8166      TCGA-DU-8167      TCGA-DU-8168      TCGA-DU-A5TP 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-A5TR      TCGA-DU-A5TS      TCGA-DU-A5TT      TCGA-DU-A5TU 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-DU-A5TW      TCGA-DU-A5TY      TCGA-E1-5302      TCGA-E1-5303 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-E1-5304      TCGA-E1-5305      TCGA-E1-5307      TCGA-E1-5311 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-E1-5318      TCGA-E1-5319      TCGA-E1-5322      TCGA-EZ-7264 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-5962      TCGA-FG-5963      TCGA-FG-5964      TCGA-FG-5965 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-6688      TCGA-FG-6689      TCGA-FG-6690      TCGA-FG-6691 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-7634      TCGA-FG-7636      TCGA-FG-7637      TCGA-FG-7638 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-7641      TCGA-FG-7643      TCGA-FG-8181      TCGA-FG-8182 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-8185      TCGA-FG-8186      TCGA-FG-8187      TCGA-FG-8188 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-8189      TCGA-FG-8191      TCGA-FG-A4MU      TCGA-FG-A4MW 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-FG-A4MX      TCGA-FG-A4MY      TCGA-FG-A60J      TCGA-HT-7467 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7468      TCGA-HT-7469      TCGA-HT-7470      TCGA-HT-7471 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7472      TCGA-HT-7473      TCGA-HT-7474      TCGA-HT-7475 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7476      TCGA-HT-7477      TCGA-HT-7478      TCGA-HT-7479 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7480      TCGA-HT-7481      TCGA-HT-7482      TCGA-HT-7485 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7601      TCGA-HT-7602      TCGA-HT-7603      TCGA-HT-7604 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7605      TCGA-HT-7606      TCGA-HT-7607      TCGA-HT-7608 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7609      TCGA-HT-7610      TCGA-HT-7611      TCGA-HT-7616 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7620      TCGA-HT-7676      TCGA-HT-7677      TCGA-HT-7680 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7681      TCGA-HT-7684      TCGA-HT-7686      TCGA-HT-7687 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7688      TCGA-HT-7689      TCGA-HT-7690      TCGA-HT-7691 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7692      TCGA-HT-7693      TCGA-HT-7694      TCGA-HT-7695 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7854      TCGA-HT-7855      TCGA-HT-7856      TCGA-HT-7857 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7858      TCGA-HT-7860      TCGA-HT-7873      TCGA-HT-7874 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7875      TCGA-HT-7877      TCGA-HT-7879      TCGA-HT-7880 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-7881      TCGA-HT-7882      TCGA-HT-7884      TCGA-HT-7902 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8010      TCGA-HT-8011      TCGA-HT-8012      TCGA-HT-8013 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8015      TCGA-HT-8018      TCGA-HT-8019      TCGA-HT-8104 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8105      TCGA-HT-8106      TCGA-HT-8107      TCGA-HT-8109 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8110      TCGA-HT-8111      TCGA-HT-8113      TCGA-HT-8114 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-8558      TCGA-HT-8564      TCGA-HT-A4DV      TCGA-HT-A5R5 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HT-A5R7      TCGA-HT-A5R9      TCGA-HT-A5RB      TCGA-HW-7486 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HW-7487      TCGA-HW-7489      TCGA-HW-7490      TCGA-HW-7491 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HW-7495      TCGA-HW-8319      TCGA-HW-8320      TCGA-HW-8321 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-HW-8322      TCGA-HW-A5KJ      TCGA-HW-A5KK      TCGA-HW-A5KM 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-IK-7675      TCGA-IK-8125      TCGA-P5-A5ET      TCGA-P5-A5EU 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-P5-A5EV      TCGA-P5-A5EW      TCGA-P5-A5EX      TCGA-P5-A5EY 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-P5-A5EZ      TCGA-P5-A5F0      TCGA-P5-A5F1      TCGA-P5-A5F2 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
     TCGA-P5-A5F4      TCGA-P5-A5F6 
"PACS1 WILD-TYPE" "PACS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PACS1 MUTATED        1      0      0      2      0
  PACS1 WILD-TYPE    131    109    109    131     30
D145V7, multiclass
        clus
vv       PACS1 MUTATED PACS1 WILD-TYPE
  CLUS_1             1             131
  CLUS_2             0             109
  CLUS_3             0             109
  CLUS_4             2             131
  CLUS_5             0              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PACS1 MUTATED        1      0      0      1      0      0      1
  PACS1 WILD-TYPE    133     71     36     65     91     41     73
D145V8, multiclass
        clus
vv       PACS1 MUTATED PACS1 WILD-TYPE
  CLUS_1             1             133
  CLUS_2             0              71
  CLUS_3             0              36
  CLUS_4             1              65
  CLUS_5             0              91
  CLUS_6             0              41
  CLUS_7             1              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS1 MUTATED        1      0      1      1
  PACS1 WILD-TYPE    135    107    182     82
D145V9, multiclass
        clus
vv       PACS1 MUTATED PACS1 WILD-TYPE
  CLUS_1             1             135
  CLUS_2             0             107
  CLUS_3             1             182
  CLUS_4             1              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS1 MUTATED        1      2      0
  PACS1 WILD-TYPE    221    182    103
D145V10, multiclass
        clus
vv       PACS1 MUTATED PACS1 WILD-TYPE
  CLUS_1             1             221
  CLUS_2             2             182
  CLUS_3             0             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS1 MUTATED        1      1      1
  PACS1 WILD-TYPE    183    161    158
D145V11, multiclass
        clus
vv       PACS1 MUTATED PACS1 WILD-TYPE
  CLUS_1             1             183
  CLUS_2             1             161
  CLUS_3             1             158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS1 MUTATED        1      1      1      0
  PACS1 WILD-TYPE     89    137    187     89
D145V12, multiclass
        clus
vv       PACS1 MUTATED PACS1 WILD-TYPE
  CLUS_1             1              89
  CLUS_2             1             137
  CLUS_3             1             187
  CLUS_4             0              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(146) Variable = RGS3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        0      0      0
  RGS3 WILD-TYPE      9     10      8
D146V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        0      0      0      0
  RGS3 WILD-TYPE      7      7      7      6
D146V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        3      2      1
  RGS3 WILD-TYPE    166    118    220
D146V3, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            3            166
  CLUS_2            2            118
  CLUS_3            1            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        4      2      0      0
  RGS3 WILD-TYPE    218     79    168     42
D146V4, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            4            218
  CLUS_2            2             79
  CLUS_3            0            168
  CLUS_4            0             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        0      0      1      2
  RGS3 WILD-TYPE     52     62     67     72
D146V5, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            0             62
  CLUS_3            1             67
  CLUS_4            2             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        0      1      2
  RGS3 WILD-TYPE     67    130     56
D146V6, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            0             67
  CLUS_2            1            130
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS3 MUTATED        1      2      0      3      0
  RGS3 WILD-TYPE    131    107    109    130     30
D146V7, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            1            131
  CLUS_2            2            107
  CLUS_3            0            109
  CLUS_4            3            130
  CLUS_5            0             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RGS3 MUTATED        1      0      0      3      0      2      0
  RGS3 WILD-TYPE    133     71     36     63     91     39     74
D146V8, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            1            133
  CLUS_2            0             71
  CLUS_3            0             36
  CLUS_4            3             63
  CLUS_5            0             91
  CLUS_6            2             39
  CLUS_7            0             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        0      2      4      0
  RGS3 WILD-TYPE    136    105    179     83
D146V9, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            0            136
  CLUS_2            2            105
  CLUS_3            4            179
  CLUS_4            0             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        2      2      2
  RGS3 WILD-TYPE    220    182    101
D146V10, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            2            220
  CLUS_2            2            182
  CLUS_3            2            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        1      1      4
  RGS3 WILD-TYPE    183    161    155
D146V11, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            1            183
  CLUS_2            1            161
  CLUS_3            4            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        1      1      3      1
  RGS3 WILD-TYPE     89    137    185     88
D146V12, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            1             89
  CLUS_2            1            137
  CLUS_3            3            185
  CLUS_4            1             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
