[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  METHYLATION"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
YEARS_TO_BIRTH            "YEARS_TO_BIRTH"           
NEOPLASM_DISEASESTAGE     "NEOPLASM_DISEASESTAGE"    
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
PATHOLOGY_M_STAGE         "PATHOLOGY_M_STAGE"        
GENDER                    "GENDER"                   
HISTOLOGICAL_TYPE         "HISTOLOGICAL_TYPE"        
COMPLETENESS_OF_RESECTION "COMPLETENESS_OF_RESECTION"
RACE                      "RACE"                     
ETHNICITY                 "ETHNICITY"                
                          Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"       "N=0"            
YEARS_TO_BIRTH            "Spearman correlation test" "N=30"           
NEOPLASM_DISEASESTAGE     "Kruskal-Wallis test"       "N=30"           
PATHOLOGY_T_STAGE         "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE         "Wilcoxon test"             "N=0"            
PATHOLOGY_M_STAGE         "Wilcoxon test"             "N=0"            
GENDER                    "Wilcoxon test"             "N=30"           
HISTOLOGICAL_TYPE         "Kruskal-Wallis test"       "N=0"            
COMPLETENESS_OF_RESECTION "Kruskal-Wallis test"       "N=30"           
RACE                      "Kruskal-Wallis test"       "N=30"           
ETHNICITY                 "Wilcoxon test"             "N=30"           
                          Associated with         
DAYS_TO_DEATH_OR_LAST_FUP " "                     
YEARS_TO_BIRTH            "older"                 
NEOPLASM_DISEASESTAGE     " "                     
PATHOLOGY_T_STAGE         "higher stage"          
PATHOLOGY_N_STAGE         " "                     
PATHOLOGY_M_STAGE         " "                     
GENDER                    "male"                  
HISTOLOGICAL_TYPE         " "                     
COMPLETENESS_OF_RESECTION " "                     
RACE                      " "                     
ETHNICITY                 "not hispanic or latino"
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP " "                                                                                       
YEARS_TO_BIRTH            "N=27"                                                                                    
NEOPLASM_DISEASESTAGE     " "                                                                                       
PATHOLOGY_T_STAGE         "N=10"                                                                                    
PATHOLOGY_N_STAGE         " "                                                                                       
PATHOLOGY_M_STAGE         " "                                                                                       
GENDER                    "N=30"                                                                                    
HISTOLOGICAL_TYPE         " "                                                                                       
COMPLETENESS_OF_RESECTION " "                                                                                       
RACE                      " "                                                                                       
ETHNICITY                 "N=30"                                                                                    
                          Associated with            
DAYS_TO_DEATH_OR_LAST_FUP " "                  " "   
YEARS_TO_BIRTH            "younger"            "N=3" 
NEOPLASM_DISEASESTAGE     " "                  " "   
PATHOLOGY_T_STAGE         "lower stage"        "N=20"
PATHOLOGY_N_STAGE         " "                  " "   
PATHOLOGY_M_STAGE         " "                  " "   
GENDER                    "female"             "N=0" 
HISTOLOGICAL_TYPE         " "                  " "   
COMPLETENESS_OF_RESECTION " "                  " "   
RACE                      " "                  " "   
ETHNICITY                 "hispanic or latino" "N=0" 
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
