[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MRNASEQ_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                                       Clinical feature                        
DAYS_TO_DEATH_OR_LAST_FUP              "DAYS_TO_DEATH_OR_LAST_FUP"             
YEARS_TO_BIRTH                         "YEARS_TO_BIRTH"                        
NEOPLASM_DISEASESTAGE                  "NEOPLASM_DISEASESTAGE"                 
PATHOLOGY_T_STAGE                      "PATHOLOGY_T_STAGE"                     
PATHOLOGY_N_STAGE                      "PATHOLOGY_N_STAGE"                     
PATHOLOGY_M_STAGE                      "PATHOLOGY_M_STAGE"                     
GENDER                                 "GENDER"                                
KARNOFSKY_PERFORMANCE_SCORE            "KARNOFSKY_PERFORMANCE_SCORE"           
HISTOLOGICAL_TYPE                      "HISTOLOGICAL_TYPE"                     
RADIATIONS_RADIATION_REGIMENINDICATION "RADIATIONS_RADIATION_REGIMENINDICATION"
NUMBER_PACK_YEARS_SMOKED               "NUMBER_PACK_YEARS_SMOKED"              
YEAR_OF_TOBACCO_SMOKING_ONSET          "YEAR_OF_TOBACCO_SMOKING_ONSET"         
COMPLETENESS_OF_RESECTION              "COMPLETENESS_OF_RESECTION"             
RACE                                   "RACE"                                  
ETHNICITY                              "ETHNICITY"                             
                                       Statistical test           
DAYS_TO_DEATH_OR_LAST_FUP              "Cox regression test"      
YEARS_TO_BIRTH                         "Spearman correlation test"
NEOPLASM_DISEASESTAGE                  "Kruskal-Wallis test"      
PATHOLOGY_T_STAGE                      "Spearman correlation test"
PATHOLOGY_N_STAGE                      "Spearman correlation test"
PATHOLOGY_M_STAGE                      "Wilcoxon test"            
GENDER                                 "Wilcoxon test"            
KARNOFSKY_PERFORMANCE_SCORE            "Spearman correlation test"
HISTOLOGICAL_TYPE                      "Kruskal-Wallis test"      
RADIATIONS_RADIATION_REGIMENINDICATION "Wilcoxon test"            
NUMBER_PACK_YEARS_SMOKED               "Spearman correlation test"
YEAR_OF_TOBACCO_SMOKING_ONSET          "Spearman correlation test"
COMPLETENESS_OF_RESECTION              "Kruskal-Wallis test"      
RACE                                   "Kruskal-Wallis test"      
ETHNICITY                              "Wilcoxon test"            
                                       Significant genes
DAYS_TO_DEATH_OR_LAST_FUP              "N=0"            
YEARS_TO_BIRTH                         "N=30"           
NEOPLASM_DISEASESTAGE                  "N=30"           
PATHOLOGY_T_STAGE                      "N=30"           
PATHOLOGY_N_STAGE                      "N=30"           
PATHOLOGY_M_STAGE                      "N=0"            
GENDER                                 "N=4"            
KARNOFSKY_PERFORMANCE_SCORE            "N=0"            
HISTOLOGICAL_TYPE                      "N=30"           
RADIATIONS_RADIATION_REGIMENINDICATION "N=0"            
NUMBER_PACK_YEARS_SMOKED               "N=30"           
YEAR_OF_TOBACCO_SMOKING_ONSET          "N=30"           
COMPLETENESS_OF_RESECTION              "N=1"            
RACE                                   "N=30"           
ETHNICITY                              "N=0"            
                                       Associated with                       
DAYS_TO_DEATH_OR_LAST_FUP              " "                                   
YEARS_TO_BIRTH                         "older"                               
NEOPLASM_DISEASESTAGE                  " "                                   
PATHOLOGY_T_STAGE                      "higher stage"                        
PATHOLOGY_N_STAGE                      "higher stage"                        
PATHOLOGY_M_STAGE                      " "                                   
GENDER                                 "male"                                
KARNOFSKY_PERFORMANCE_SCORE            " "                                   
HISTOLOGICAL_TYPE                      " "                                   
RADIATIONS_RADIATION_REGIMENINDICATION " "                                   
NUMBER_PACK_YEARS_SMOKED               "higher number_pack_years_smoked"     
YEAR_OF_TOBACCO_SMOKING_ONSET          "higher year_of_tobacco_smoking_onset"
COMPLETENESS_OF_RESECTION              " "                                   
RACE                                   " "                                   
ETHNICITY                              " "                                   
                                       &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP              " "                                                                                       
YEARS_TO_BIRTH                         "N=11"                                                                                    
NEOPLASM_DISEASESTAGE                  " "                                                                                       
PATHOLOGY_T_STAGE                      "N=0"                                                                                     
PATHOLOGY_N_STAGE                      "N=8"                                                                                     
PATHOLOGY_M_STAGE                      " "                                                                                       
GENDER                                 "N=4"                                                                                     
KARNOFSKY_PERFORMANCE_SCORE            " "                                                                                       
HISTOLOGICAL_TYPE                      " "                                                                                       
RADIATIONS_RADIATION_REGIMENINDICATION " "                                                                                       
NUMBER_PACK_YEARS_SMOKED               "N=20"                                                                                    
YEAR_OF_TOBACCO_SMOKING_ONSET          "N=21"                                                                                    
COMPLETENESS_OF_RESECTION              " "                                                                                       
RACE                                   " "                                                                                       
ETHNICITY                              " "                                                                                       
                                       Associated with                      
DAYS_TO_DEATH_OR_LAST_FUP              " "                                  
YEARS_TO_BIRTH                         "younger"                            
NEOPLASM_DISEASESTAGE                  " "                                  
PATHOLOGY_T_STAGE                      "lower stage"                        
PATHOLOGY_N_STAGE                      "lower stage"                        
PATHOLOGY_M_STAGE                      " "                                  
GENDER                                 "female"                             
KARNOFSKY_PERFORMANCE_SCORE            " "                                  
HISTOLOGICAL_TYPE                      " "                                  
RADIATIONS_RADIATION_REGIMENINDICATION " "                                  
NUMBER_PACK_YEARS_SMOKED               "lower number_pack_years_smoked"     
YEAR_OF_TOBACCO_SMOKING_ONSET          "lower year_of_tobacco_smoking_onset"
COMPLETENESS_OF_RESECTION              " "                                  
RACE                                   " "                                  
ETHNICITY                              " "                                  
                                             
DAYS_TO_DEATH_OR_LAST_FUP              " "   
YEARS_TO_BIRTH                         "N=19"
NEOPLASM_DISEASESTAGE                  " "   
PATHOLOGY_T_STAGE                      "N=30"
PATHOLOGY_N_STAGE                      "N=22"
PATHOLOGY_M_STAGE                      " "   
GENDER                                 "N=0" 
KARNOFSKY_PERFORMANCE_SCORE            " "   
HISTOLOGICAL_TYPE                      " "   
RADIATIONS_RADIATION_REGIMENINDICATION " "   
NUMBER_PACK_YEARS_SMOKED               "N=10"
YEAR_OF_TOBACCO_SMOKING_ONSET          "N=9" 
COMPLETENESS_OF_RESECTION              " "   
RACE                                   " "   
ETHNICITY                              " "   
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
