[1] "ofn"        "-oTLUAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUAD-TP/15111023/LUAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/15092520/transformed.cor.cli.txt"

nPatients in clinical file=519, in cluster file=516, common to both=516
[1]  68 516
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          141                           375 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          141                           375 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          372                           144 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          372                           144 
[1] "AMP PEAK  3(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                          171                           345 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                          171                           345 
[1] "AMP PEAK  4(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                           328                            188 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                           328                            188 
[1] "AMP PEAK  5(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                          190                           326 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                          190                           326 
[1] "AMP PEAK  6(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          272                           244 
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          272                           244 
[1] "AMP PEAK  7(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          214                           302 
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          214                           302 
[1] "AMP PEAK  8(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                           173                            343 
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                           173                            343 
[1] "AMP PEAK  9(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                           322                            194 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                           322                            194 
[1] "AMP PEAK 10(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                           170                            346 
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                           170                            346 
[1] "AMP PEAK 11(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                           179                            337 
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                           179                            337 
[1] "AMP PEAK 12(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE 
                           168                            348 
  AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE 
                           168                            348 
[1] "AMP PEAK 13(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                         171                          345 
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                         171                          345 
[1] "AMP PEAK 14(14Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE 
                           229                            287 
  AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE 
                           229                            287 
[1] "AMP PEAK 15(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE 
                         226                          290 
  AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE 
                         226                          290 
[1] "AMP PEAK 16(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE 
                           249                            267 
  AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE 
                           249                            267 
[1] "AMP PEAK 17(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE 
                           103                            413 
  AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE 
                           103                            413 
[1] "AMP PEAK 18(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE 
                         137                          379 
  AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE 
                         137                          379 
[1] "AMP PEAK 19(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE 
                            244                             272 
  AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE 
                            244                             272 
[1] "AMP PEAK 20(22Q11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE 
                             88                             428 
  AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE 
                             88                             428 
[1] "AMP PEAK 21(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE 
                        157                         359 
  AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE 
                        157                         359 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           125                            391 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           125                            391 
[1] "DEL PEAK  2(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                          149                           367 
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                          149                           367 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           46                           470 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           46                           470 
[1] "DEL PEAK  4(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE 
                          236                           280 
  DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE 
                          236                           280 
[1] "DEL PEAK  5(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                           246                            270 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                           246                            270 
[1] "DEL PEAK  6(3Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE 
                          140                           376 
  DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE 
                          140                           376 
[1] "DEL PEAK  7(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                        135                         381 
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                        135                         381 
[1] "DEL PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                          131                           385 
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                          131                           385 
[1] "DEL PEAK  9(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          188                           328 
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          188                           328 
[1] "DEL PEAK 10(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                          177                           339 
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                          177                           339 
[1] "DEL PEAK 11(5Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE 
                          208                           308 
  DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE 
                          208                           308 
[1] "DEL PEAK 12(6Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE 
                          134                           382 
  DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE 
                          134                           382 
[1] "DEL PEAK 13(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE 
                           252                            264 
  DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE 
                           252                            264 
[1] "DEL PEAK 14(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                        257                         259 
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                        257                         259 
[1] "DEL PEAK 15(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          257                           259 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          257                           259 
[1] "DEL PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           123                            393 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           123                            393 
[1] "DEL PEAK 17(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        285                         231 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        285                         231 
[1] "DEL PEAK 18(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          291                           225 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          291                           225 
[1] "DEL PEAK 19(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                           256                            260 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                           256                            260 
[1] "DEL PEAK 20(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE 
                           126                            390 
  DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE 
                           126                            390 
[1] "DEL PEAK 21(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           156                            360 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           156                            360 
[1] "DEL PEAK 22(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           143                            373 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           143                            373 
[1] "DEL PEAK 23(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE 
                           119                            397 
  DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE 
                           119                            397 
[1] "DEL PEAK 24(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE 
                         117                          399 
  DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE 
                         117                          399 
[1] "DEL PEAK 25(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE 
                           138                            378 
  DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE 
                           138                            378 
[1] "DEL PEAK 26(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE 
                          98                          418 
  DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE 
                          98                          418 
[1] "DEL PEAK 27(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                            137                             379 
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                            137                             379 
[1] "DEL PEAK 28(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE 
                            294                             222 
  DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE 
                            294                             222 
[1] "DEL PEAK 29(13Q12.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE 
                            293                             223 
  DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE 
                            293                             223 
[1] "DEL PEAK 30(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           282                            234 
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           282                            234 
[1] "DEL PEAK 31(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE 
                         243                          273 
  DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE 
                         243                          273 
[1] "DEL PEAK 32(14Q32.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE 
                            144                             372 
  DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE 
                            144                             372 
[1] "DEL PEAK 33(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE 
                           262                            254 
  DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE 
                           262                            254 
[1] "DEL PEAK 34(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE 
                           274                            242 
  DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE 
                           274                            242 
[1] "DEL PEAK 35(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                           170                            346 
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                           170                            346 
[1] "DEL PEAK 36(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE 
                           281                            235 
  DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE 
                           281                            235 
[1] "DEL PEAK 37(18Q21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE 
                            251                             265 
  DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE 
                            251                             265 
[1] "DEL PEAK 38(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE 
                           283                            233 
  DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE 
                           283                            233 
[1] "DEL PEAK 39(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE 
                           280                            236 
  DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE 
                           280                            236 
[1] "DEL PEAK 40(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE 
                           270                            246 
  DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE 
                           270                            246 
[1] "DEL PEAK 41(19Q11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE 
                         134                          382 
  DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE 
                         134                          382 
[1] "DEL PEAK 42(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE 
                            194                             322 
  DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE 
                            194                             322 
[1] "DEL PEAK 43(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE 
                         131                          385 
  DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE 
                         131                          385 
[1] "DEL PEAK 44(20Q13.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE 
                             80                             436 
  DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE 
                             80                             436 
[1] "DEL PEAK 45(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE 
                           185                            331 
  DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE 
                           185                            331 
[1] "DEL PEAK 46(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE 
                            255                             261 
  DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE 
                            255                             261 
[1] "DEL PEAK 47(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE 
                          143                           373 
  DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE 
                          143                           373 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 516 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 516 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P22.3) MUTATED        1      2      2      1
  AMP PEAK  1(1P22.3) WILD-TYPE      4      7     10      5
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           2                             7
  CLUS_3                           2                            10
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED        2      3      1
  AMP PEAK  1(1P22.3) WILD-TYPE     12      8      6
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                             8
  CLUS_3                           1                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P22.3) MUTATED       17     45     10     69
  AMP PEAK  1(1P22.3) WILD-TYPE     52    183     69     71
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          17                            52
  CLUS_2                          45                           183
  CLUS_3                          10                            69
  CLUS_4                          69                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       35     43     48
  AMP PEAK  1(1P22.3) WILD-TYPE    109    106    114
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          35                           109
  CLUS_2                          43                           106
  CLUS_3                          48                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       15     27     11
  AMP PEAK  1(1P22.3) WILD-TYPE     29     46     53
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          15                            29
  CLUS_2                          27                            46
  CLUS_3                          11                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       14      8     16      7      8
  AMP PEAK  1(1P22.3) WILD-TYPE     26     25     29     24     24
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          14                            26
  CLUS_2                           8                            25
  CLUS_3                          16                            29
  CLUS_4                           7                            24
  CLUS_5                           8                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       41     65     34
  AMP PEAK  1(1P22.3) WILD-TYPE    125    130    117
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          41                           125
  CLUS_2                          65                           130
  CLUS_3                          34                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       20     34     38      8     12     13
  AMP PEAK  1(1P22.3) WILD-TYPE     58     76     59     40     41     36
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P22.3) MUTATED       15
  AMP PEAK  1(1P22.3) WILD-TYPE     62
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          20                            58
  CLUS_2                          34                            76
  CLUS_3                          38                            59
  CLUS_4                           8                            40
  CLUS_5                          12                            41
  CLUS_6                          13                            36
  CLUS_7                          15                            62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       42     69     28
  AMP PEAK  1(1P22.3) WILD-TYPE    147    159     65
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          42                           147
  CLUS_2                          69                           159
  CLUS_3                          28                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P22.3) MUTATED       15     52     33     39
  AMP PEAK  1(1P22.3) WILD-TYPE     56    146    108     61
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          15                            56
  CLUS_2                          52                           146
  CLUS_3                          33                           108
  CLUS_4                          39                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       45     56     21
  AMP PEAK  1(1P22.3) WILD-TYPE    100    142     70
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          45                           100
  CLUS_2                          56                           142
  CLUS_3                          21                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       22     73     27
  AMP PEAK  1(1P22.3) WILD-TYPE     81    175     56
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          22                            81
  CLUS_2                          73                           175
  CLUS_3                          27                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED        3      5      6      2
  AMP PEAK  2(1Q21.3) WILD-TYPE      2      4      6      4
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           5                             4
  CLUS_3                           6                             6
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED        7      6      3
  AMP PEAK  2(1Q21.3) WILD-TYPE      7      5      4
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                           6                             5
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       63    140     58    111
  AMP PEAK  2(1Q21.3) WILD-TYPE      6     88     21     29
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          63                             6
  CLUS_2                         140                            88
  CLUS_3                          58                            21
  CLUS_4                         111                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       80    124    127
  AMP PEAK  2(1Q21.3) WILD-TYPE     64     25     35
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          80                            64
  CLUS_2                         124                            25
  CLUS_3                         127                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       39     53     45
  AMP PEAK  2(1Q21.3) WILD-TYPE      5     20     19
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          39                             5
  CLUS_2                          53                            20
  CLUS_3                          45                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       30     30     32     18     27
  AMP PEAK  2(1Q21.3) WILD-TYPE     10      3     13     13      5
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          30                            10
  CLUS_2                          30                             3
  CLUS_3                          32                            13
  CLUS_4                          18                            13
  CLUS_5                          27                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      106    134    129
  AMP PEAK  2(1Q21.3) WILD-TYPE     60     61     22
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         106                            60
  CLUS_2                         134                            61
  CLUS_3                         129                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       54     74     69     45     45     38
  AMP PEAK  2(1Q21.3) WILD-TYPE     24     36     28      3      8     11
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED       44
  AMP PEAK  2(1Q21.3) WILD-TYPE     33
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          54                            24
  CLUS_2                          74                            36
  CLUS_3                          69                            28
  CLUS_4                          45                             3
  CLUS_5                          45                             8
  CLUS_6                          38                            11
  CLUS_7                          44                            33
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      122    180     65
  AMP PEAK  2(1Q21.3) WILD-TYPE     67     48     28
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         122                            67
  CLUS_2                         180                            48
  CLUS_3                          65                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       52    155     83     77
  AMP PEAK  2(1Q21.3) WILD-TYPE     19     43     58     23
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          52                            19
  CLUS_2                         155                            43
  CLUS_3                          83                            58
  CLUS_4                          77                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      111    152     54
  AMP PEAK  2(1Q21.3) WILD-TYPE     34     46     37
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         111                            34
  CLUS_2                         152                            46
  CLUS_3                          54                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       68    185     64
  AMP PEAK  2(1Q21.3) WILD-TYPE     35     63     19
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          68                            35
  CLUS_2                         185                            63
  CLUS_3                          64                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED        0      6      0      4
  AMP PEAK  3(3Q26.2) WILD-TYPE      5      3     12      2
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           6                             3
  CLUS_3                           0                            12
  CLUS_4                           4                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED        0      6      4
  AMP PEAK  3(3Q26.2) WILD-TYPE     14      5      3
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             5
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED       22     46     44     59
  AMP PEAK  3(3Q26.2) WILD-TYPE     47    182     35     81
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          46                           182
  CLUS_3                          44                            35
  CLUS_4                          59                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       27     70     50
  AMP PEAK  3(3Q26.2) WILD-TYPE    117     79    112
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          27                           117
  CLUS_2                          70                            79
  CLUS_3                          50                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       11     27     21
  AMP PEAK  3(3Q26.2) WILD-TYPE     33     46     43
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          27                            46
  CLUS_3                          21                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.2) MUTATED       14      3     19     13     10
  AMP PEAK  3(3Q26.2) WILD-TYPE     26     30     26     18     22
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          14                            26
  CLUS_2                           3                            30
  CLUS_3                          19                            26
  CLUS_4                          13                            18
  CLUS_5                          10                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       26     92     53
  AMP PEAK  3(3Q26.2) WILD-TYPE    140    103     98
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          26                           140
  CLUS_2                          92                           103
  CLUS_3                          53                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.2) MUTATED        8     39     65      5     17     19
  AMP PEAK  3(3Q26.2) WILD-TYPE     70     71     32     43     36     30
                               vv
clus                            CLUS_7
  AMP PEAK  3(3Q26.2) MUTATED       18
  AMP PEAK  3(3Q26.2) WILD-TYPE     59
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           8                            70
  CLUS_2                          39                            71
  CLUS_3                          65                            32
  CLUS_4                           5                            43
  CLUS_5                          17                            36
  CLUS_6                          19                            30
  CLUS_7                          18                            59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       41    103     25
  AMP PEAK  3(3Q26.2) WILD-TYPE    148    125     68
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          41                           148
  CLUS_2                         103                           125
  CLUS_3                          25                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED       12     67     36     54
  AMP PEAK  3(3Q26.2) WILD-TYPE     59    131    105     46
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          12                            59
  CLUS_2                          67                           131
  CLUS_3                          36                           105
  CLUS_4                          54                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       48     69     25
  AMP PEAK  3(3Q26.2) WILD-TYPE     97    129     66
D3V11, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          48                            97
  CLUS_2                          69                           129
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       15    101     26
  AMP PEAK  3(3Q26.2) WILD-TYPE     88    147     57
D3V12, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          15                            88
  CLUS_2                         101                           147
  CLUS_3                          26                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED        4      1      6      4
  AMP PEAK  4(5P15.33) WILD-TYPE      1      8      6      2
D4V1, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            1                              8
  CLUS_3                            6                              6
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED        7      3      5
  AMP PEAK  4(5P15.33) WILD-TYPE      7      8      2
D4V2, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                            3                              8
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       47    109     48    124
  AMP PEAK  4(5P15.33) WILD-TYPE     22    119     31     16
D4V3, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           47                             22
  CLUS_2                          109                            119
  CLUS_3                           48                             31
  CLUS_4                          124                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       76    108    108
  AMP PEAK  4(5P15.33) WILD-TYPE     68     41     54
D4V4, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           76                             68
  CLUS_2                          108                             41
  CLUS_3                          108                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       26     57     39
  AMP PEAK  4(5P15.33) WILD-TYPE     18     16     25
D4V5, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           26                             18
  CLUS_2                           57                             16
  CLUS_3                           39                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5P15.33) MUTATED       30     19     35     15     23
  AMP PEAK  4(5P15.33) WILD-TYPE     10     14     10     16      9
D4V6, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           30                             10
  CLUS_2                           19                             14
  CLUS_3                           35                             10
  CLUS_4                           15                             16
  CLUS_5                           23                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       96    138     91
  AMP PEAK  4(5P15.33) WILD-TYPE     70     57     60
D4V7, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           96                             70
  CLUS_2                          138                             57
  CLUS_3                           91                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5P15.33) MUTATED       48     76     77     22     35     30
  AMP PEAK  4(5P15.33) WILD-TYPE     30     34     20     26     18     19
                                vv
clus                             CLUS_7
  AMP PEAK  4(5P15.33) MUTATED       37
  AMP PEAK  4(5P15.33) WILD-TYPE     40
D4V8, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           48                             30
  CLUS_2                           76                             34
  CLUS_3                           77                             20
  CLUS_4                           22                             26
  CLUS_5                           35                             18
  CLUS_6                           30                             19
  CLUS_7                           37                             40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED      103    163     61
  AMP PEAK  4(5P15.33) WILD-TYPE     86     65     32
D4V9, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                          103                             86
  CLUS_2                          163                             65
  CLUS_3                           61                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       44    134     73     76
  AMP PEAK  4(5P15.33) WILD-TYPE     27     64     68     24
D4V10, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           44                             27
  CLUS_2                          134                             64
  CLUS_3                           73                             68
  CLUS_4                           76                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       90    137     58
  AMP PEAK  4(5P15.33) WILD-TYPE     55     61     33
D4V11, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           90                             55
  CLUS_2                          137                             61
  CLUS_3                           58                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       42    187     56
  AMP PEAK  4(5P15.33) WILD-TYPE     61     61     27
D4V12, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           42                             61
  CLUS_2                          187                             61
  CLUS_3                           56                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED        1      2      5      3
  AMP PEAK  5(6P21.1) WILD-TYPE      4      7      7      3
D5V1, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           2                             7
  CLUS_3                           5                             7
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED        5      2      4
  AMP PEAK  5(6P21.1) WILD-TYPE      9      9      3
D5V2, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           2                             9
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED       43     61     28     58
  AMP PEAK  5(6P21.1) WILD-TYPE     26    167     51     82
D5V3, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          43                            26
  CLUS_2                          61                           167
  CLUS_3                          28                            51
  CLUS_4                          58                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       28     72     70
  AMP PEAK  5(6P21.1) WILD-TYPE    116     77     92
D5V4, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          28                           116
  CLUS_2                          72                            77
  CLUS_3                          70                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       22     22     24
  AMP PEAK  5(6P21.1) WILD-TYPE     22     51     40
D5V5, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          22                            22
  CLUS_2                          22                            51
  CLUS_3                          24                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(6P21.1) MUTATED       19     13     14      9     13
  AMP PEAK  5(6P21.1) WILD-TYPE     21     20     31     22     19
D5V6, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          19                            21
  CLUS_2                          13                            20
  CLUS_3                          14                            31
  CLUS_4                           9                            22
  CLUS_5                          13                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       52     70     67
  AMP PEAK  5(6P21.1) WILD-TYPE    114    125     84
D5V7, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          52                           114
  CLUS_2                          70                           125
  CLUS_3                          67                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.1) MUTATED       26     35     44     24     25     17
  AMP PEAK  5(6P21.1) WILD-TYPE     52     75     53     24     28     32
                               vv
clus                            CLUS_7
  AMP PEAK  5(6P21.1) MUTATED       18
  AMP PEAK  5(6P21.1) WILD-TYPE     59
D5V8, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          26                            52
  CLUS_2                          35                            75
  CLUS_3                          44                            53
  CLUS_4                          24                            24
  CLUS_5                          25                            28
  CLUS_6                          17                            32
  CLUS_7                          18                            59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       58     97     31
  AMP PEAK  5(6P21.1) WILD-TYPE    131    131     62
D5V9, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          58                           131
  CLUS_2                          97                           131
  CLUS_3                          31                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED       21     85     38     42
  AMP PEAK  5(6P21.1) WILD-TYPE     50    113    103     58
D5V10, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          21                            50
  CLUS_2                          85                           113
  CLUS_3                          38                           103
  CLUS_4                          42                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       48     80     32
  AMP PEAK  5(6P21.1) WILD-TYPE     97    118     59
D5V11, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          48                            97
  CLUS_2                          80                           118
  CLUS_3                          32                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       27     97     36
  AMP PEAK  5(6P21.1) WILD-TYPE     76    151     47
D5V12, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          27                            76
  CLUS_2                          97                           151
  CLUS_3                          36                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED        2      4      7      3
  AMP PEAK  6(7P11.2) WILD-TYPE      3      5      5      3
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           4                             5
  CLUS_3                           7                             5
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED        8      5      3
  AMP PEAK  6(7P11.2) WILD-TYPE      6      6      4
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           5                             6
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       26     87     46    113
  AMP PEAK  6(7P11.2) WILD-TYPE     43    141     33     27
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          26                            43
  CLUS_2                          87                           141
  CLUS_3                          46                            33
  CLUS_4                         113                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       64     79     96
  AMP PEAK  6(7P11.2) WILD-TYPE     80     70     66
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          64                            80
  CLUS_2                          79                            70
  CLUS_3                          96                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       14     47     33
  AMP PEAK  6(7P11.2) WILD-TYPE     30     26     31
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          14                            30
  CLUS_2                          47                            26
  CLUS_3                          33                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7P11.2) MUTATED       24     13     32     13     12
  AMP PEAK  6(7P11.2) WILD-TYPE     16     20     13     18     20
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          24                            16
  CLUS_2                          13                            20
  CLUS_3                          32                            13
  CLUS_4                          13                            18
  CLUS_5                          12                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       75    135     58
  AMP PEAK  6(7P11.2) WILD-TYPE     91     60     93
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          75                            91
  CLUS_2                         135                            60
  CLUS_3                          58                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P11.2) MUTATED       31     81     57      9     24     32
  AMP PEAK  6(7P11.2) WILD-TYPE     47     29     40     39     29     17
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P11.2) MUTATED       34
  AMP PEAK  6(7P11.2) WILD-TYPE     43
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          31                            47
  CLUS_2                          81                            29
  CLUS_3                          57                            40
  CLUS_4                           9                            39
  CLUS_5                          24                            29
  CLUS_6                          32                            17
  CLUS_7                          34                            43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       71    133     64
  AMP PEAK  6(7P11.2) WILD-TYPE    118     95     29
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          71                           118
  CLUS_2                         133                            95
  CLUS_3                          64                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       22    126     63     57
  AMP PEAK  6(7P11.2) WILD-TYPE     49     72     78     43
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          22                            49
  CLUS_2                         126                            72
  CLUS_3                          63                            78
  CLUS_4                          57                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       61    107     65
  AMP PEAK  6(7P11.2) WILD-TYPE     84     91     26
D6V11, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          61                            84
  CLUS_2                         107                            91
  CLUS_3                          65                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       31    153     49
  AMP PEAK  6(7P11.2) WILD-TYPE     72     95     34
D6V12, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          31                            72
  CLUS_2                         153                            95
  CLUS_3                          49                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED        2      4      4      2
  AMP PEAK  7(7Q31.2) WILD-TYPE      3      5      8      4
D7V1, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           4                             5
  CLUS_3                           4                             8
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED        4      6      2
  AMP PEAK  7(7Q31.2) WILD-TYPE     10      5      5
D7V2, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           6                             5
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       19     67     30     98
  AMP PEAK  7(7Q31.2) WILD-TYPE     50    161     49     42
D7V3, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          19                            50
  CLUS_2                          67                           161
  CLUS_3                          30                            49
  CLUS_4                          98                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       52     59     75
  AMP PEAK  7(7Q31.2) WILD-TYPE     92     90     87
D7V4, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          52                            92
  CLUS_2                          59                            90
  CLUS_3                          75                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       12     33     25
  AMP PEAK  7(7Q31.2) WILD-TYPE     32     40     39
D7V5, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          33                            40
  CLUS_3                          25                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7Q31.2) MUTATED       19     10     21      8     12
  AMP PEAK  7(7Q31.2) WILD-TYPE     21     23     24     23     20
D7V6, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          19                            21
  CLUS_2                          10                            23
  CLUS_3                          21                            24
  CLUS_4                           8                            23
  CLUS_5                          12                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       55    106     49
  AMP PEAK  7(7Q31.2) WILD-TYPE    111     89    102
D7V7, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          55                           111
  CLUS_2                         106                            89
  CLUS_3                          49                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q31.2) MUTATED       22     71     46      5     16     22
  AMP PEAK  7(7Q31.2) WILD-TYPE     56     39     51     43     37     27
                               vv
clus                            CLUS_7
  AMP PEAK  7(7Q31.2) MUTATED       28
  AMP PEAK  7(7Q31.2) WILD-TYPE     49
D7V8, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          22                            56
  CLUS_2                          71                            39
  CLUS_3                          46                            51
  CLUS_4                           5                            43
  CLUS_5                          16                            37
  CLUS_6                          22                            27
  CLUS_7                          28                            49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       59    103     48
  AMP PEAK  7(7Q31.2) WILD-TYPE    130    125     45
D7V9, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          59                           130
  CLUS_2                         103                           125
  CLUS_3                          48                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       18     97     50     45
  AMP PEAK  7(7Q31.2) WILD-TYPE     53    101     91     55
D7V10, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          18                            53
  CLUS_2                          97                           101
  CLUS_3                          50                            91
  CLUS_4                          45                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       52     85     45
  AMP PEAK  7(7Q31.2) WILD-TYPE     93    113     46
D7V11, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          52                            93
  CLUS_2                          85                           113
  CLUS_3                          45                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       22    123     37
  AMP PEAK  7(7Q31.2) WILD-TYPE     81    125     46
D7V12, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          22                            81
  CLUS_2                         123                           125
  CLUS_3                          37                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8P11.21) MUTATED        1      3      1      2
  AMP PEAK  8(8P11.21) WILD-TYPE      4      6     11      4
D8V1, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            1                             11
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED        2      3      2
  AMP PEAK  8(8P11.21) WILD-TYPE     12      8      5
D8V2, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              8
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8P11.21) MUTATED       55     43     30     45
  AMP PEAK  8(8P11.21) WILD-TYPE     14    185     49     95
D8V3, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           55                             14
  CLUS_2                           43                            185
  CLUS_3                           30                             49
  CLUS_4                           45                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED       27     69     57
  AMP PEAK  8(8P11.21) WILD-TYPE    117     80    105
D8V4, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           27                            117
  CLUS_2                           69                             80
  CLUS_3                           57                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED       13     20     26
  AMP PEAK  8(8P11.21) WILD-TYPE     31     53     38
D8V5, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           20                             53
  CLUS_3                           26                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8P11.21) MUTATED       11     12     16     11      9
  AMP PEAK  8(8P11.21) WILD-TYPE     29     21     29     20     23
D8V6, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           11                             29
  CLUS_2                           12                             21
  CLUS_3                           16                             29
  CLUS_4                           11                             20
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED       32     67     71
  AMP PEAK  8(8P11.21) WILD-TYPE    134    128     80
D8V7, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           32                            134
  CLUS_2                           67                            128
  CLUS_3                           71                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8P11.21) MUTATED       17     37     39     15     32     18
  AMP PEAK  8(8P11.21) WILD-TYPE     61     73     58     33     21     31
                                vv
clus                             CLUS_7
  AMP PEAK  8(8P11.21) MUTATED       12
  AMP PEAK  8(8P11.21) WILD-TYPE     65
D8V8, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           17                             61
  CLUS_2                           37                             73
  CLUS_3                           39                             58
  CLUS_4                           15                             33
  CLUS_5                           32                             21
  CLUS_6                           18                             31
  CLUS_7                           12                             65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED       45     96     30
  AMP PEAK  8(8P11.21) WILD-TYPE    144    132     63
D8V9, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           45                            144
  CLUS_2                           96                            132
  CLUS_3                           30                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8P11.21) MUTATED       18     74     31     48
  AMP PEAK  8(8P11.21) WILD-TYPE     53    124    110     52
D8V10, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                           74                            124
  CLUS_3                           31                            110
  CLUS_4                           48                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED       36     79     32
  AMP PEAK  8(8P11.21) WILD-TYPE    109    119     59
D8V11, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           36                            109
  CLUS_2                           79                            119
  CLUS_3                           32                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8P11.21) MUTATED       19    101     27
  AMP PEAK  8(8P11.21) WILD-TYPE     84    147     56
D8V12, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           19                             84
  CLUS_2                          101                            147
  CLUS_3                           27                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED        5      7      3      5
  AMP PEAK  9(8Q24.21) WILD-TYPE      0      2      9      1
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                            5                              0
  CLUS_2                            7                              2
  CLUS_3                            3                              9
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED        5      9      6
  AMP PEAK  9(8Q24.21) WILD-TYPE      9      2      1
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            9                              2
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       66     94     53    109
  AMP PEAK  9(8Q24.21) WILD-TYPE      3    134     26     31
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           66                              3
  CLUS_2                           94                            134
  CLUS_3                           53                             26
  CLUS_4                          109                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       63    101    117
  AMP PEAK  9(8Q24.21) WILD-TYPE     81     48     45
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           63                             81
  CLUS_2                          101                             48
  CLUS_3                          117                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       27     47     44
  AMP PEAK  9(8Q24.21) WILD-TYPE     17     26     20
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           27                             17
  CLUS_2                           47                             26
  CLUS_3                           44                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8Q24.21) MUTATED       27     23     29     19     20
  AMP PEAK  9(8Q24.21) WILD-TYPE     13     10     16     12     12
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           27                             13
  CLUS_2                           23                             10
  CLUS_3                           29                             16
  CLUS_4                           19                             12
  CLUS_5                           20                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       76    136    106
  AMP PEAK  9(8Q24.21) WILD-TYPE     90     59     45
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           76                             90
  CLUS_2                          136                             59
  CLUS_3                          106                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.21) MUTATED       39     77     67     28     47     31
  AMP PEAK  9(8Q24.21) WILD-TYPE     39     33     30     20      6     18
                                vv
clus                             CLUS_7
  AMP PEAK  9(8Q24.21) MUTATED       29
  AMP PEAK  9(8Q24.21) WILD-TYPE     48
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           39                             39
  CLUS_2                           77                             33
  CLUS_3                           67                             30
  CLUS_4                           28                             20
  CLUS_5                           47                              6
  CLUS_6                           31                             18
  CLUS_7                           29                             48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       89    167     62
  AMP PEAK  9(8Q24.21) WILD-TYPE    100     61     31
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           89                            100
  CLUS_2                          167                             61
  CLUS_3                           62                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       36    139     72     71
  AMP PEAK  9(8Q24.21) WILD-TYPE     35     59     69     29
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           36                             35
  CLUS_2                          139                             59
  CLUS_3                           72                             69
  CLUS_4                           71                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       78    132     58
  AMP PEAK  9(8Q24.21) WILD-TYPE     67     66     33
D9V11, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           78                             67
  CLUS_2                          132                             66
  CLUS_3                           58                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       42    175     51
  AMP PEAK  9(8Q24.21) WILD-TYPE     61     73     32
D9V12, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           42                             61
  CLUS_2                          175                             73
  CLUS_3                           51                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11Q13.3) MUTATED        2      1      2      6
  AMP PEAK 10(11Q13.3) WILD-TYPE      3      8     10      0
D10V1, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            1                              8
  CLUS_3                            2                             10
  CLUS_4                            6                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED        3      1      7
  AMP PEAK 10(11Q13.3) WILD-TYPE     11     10      0
D10V2, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            1                             10
  CLUS_3                            7                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11Q13.3) MUTATED       36     32     29     73
  AMP PEAK 10(11Q13.3) WILD-TYPE     33    196     50     67
D10V3, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           36                             33
  CLUS_2                           32                            196
  CLUS_3                           29                             50
  CLUS_4                           73                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED       27     56     66
  AMP PEAK 10(11Q13.3) WILD-TYPE    117     93     96
D10V4, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           27                            117
  CLUS_2                           56                             93
  CLUS_3                           66                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED        8     27     25
  AMP PEAK 10(11Q13.3) WILD-TYPE     36     46     39
D10V5, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           27                             46
  CLUS_3                           25                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(11Q13.3) MUTATED       13     13     15     10      9
  AMP PEAK 10(11Q13.3) WILD-TYPE     27     20     30     21     23
D10V6, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           13                             27
  CLUS_2                           13                             20
  CLUS_3                           15                             30
  CLUS_4                           10                             21
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED       35     70     65
  AMP PEAK 10(11Q13.3) WILD-TYPE    131    125     86
D10V7, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           35                            131
  CLUS_2                           70                            125
  CLUS_3                           65                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(11Q13.3) MUTATED       20     43     38      4     35     16
  AMP PEAK 10(11Q13.3) WILD-TYPE     58     67     59     44     18     33
                                vv
clus                             CLUS_7
  AMP PEAK 10(11Q13.3) MUTATED       14
  AMP PEAK 10(11Q13.3) WILD-TYPE     63
D10V8, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           20                             58
  CLUS_2                           43                             67
  CLUS_3                           38                             59
  CLUS_4                            4                             44
  CLUS_5                           35                             18
  CLUS_6                           16                             33
  CLUS_7                           14                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED       35    102     30
  AMP PEAK 10(11Q13.3) WILD-TYPE    154    126     63
D10V9, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           35                            154
  CLUS_2                          102                            126
  CLUS_3                           30                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11Q13.3) MUTATED       10     81     29     47
  AMP PEAK 10(11Q13.3) WILD-TYPE     61    117    112     53
D10V10, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           10                             61
  CLUS_2                           81                            117
  CLUS_3                           29                            112
  CLUS_4                           47                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED       43     71     31
  AMP PEAK 10(11Q13.3) WILD-TYPE    102    127     60
D10V11, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           43                            102
  CLUS_2                           71                            127
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED       18     98     29
  AMP PEAK 10(11Q13.3) WILD-TYPE     85    150     54
D10V12, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           98                            150
  CLUS_3                           29                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P12.1) MUTATED        1      3      2      4
  AMP PEAK 11(12P12.1) WILD-TYPE      4      6     10      2
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            2                             10
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED        2      3      5
  AMP PEAK 11(12P12.1) WILD-TYPE     12      8      2
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              8
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P12.1) MUTATED       26     45     62     46
  AMP PEAK 11(12P12.1) WILD-TYPE     43    183     17     94
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           26                             43
  CLUS_2                           45                            183
  CLUS_3                           62                             17
  CLUS_4                           46                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       33     61     59
  AMP PEAK 11(12P12.1) WILD-TYPE    111     88    103
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           33                            111
  CLUS_2                           61                             88
  CLUS_3                           59                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED        7     27     22
  AMP PEAK 11(12P12.1) WILD-TYPE     37     46     42
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                           27                             46
  CLUS_3                           22                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED       15      9     15     11      6
  AMP PEAK 11(12P12.1) WILD-TYPE     25     24     30     20     26
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           15                             25
  CLUS_2                            9                             24
  CLUS_3                           15                             30
  CLUS_4                           11                             20
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       31     83     65
  AMP PEAK 11(12P12.1) WILD-TYPE    135    112     86
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           31                            135
  CLUS_2                           83                            112
  CLUS_3                           65                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P12.1) MUTATED       12     43     35      5     33     30
  AMP PEAK 11(12P12.1) WILD-TYPE     66     67     62     43     20     19
                                vv
clus                             CLUS_7
  AMP PEAK 11(12P12.1) MUTATED       21
  AMP PEAK 11(12P12.1) WILD-TYPE     56
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           12                             66
  CLUS_2                           43                             67
  CLUS_3                           35                             62
  CLUS_4                            5                             43
  CLUS_5                           33                             20
  CLUS_6                           30                             19
  CLUS_7                           21                             56
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       44    103     29
  AMP PEAK 11(12P12.1) WILD-TYPE    145    125     64
D11V9, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           44                            145
  CLUS_2                          103                            125
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P12.1) MUTATED       13     81     35     47
  AMP PEAK 11(12P12.1) WILD-TYPE     58    117    106     53
D11V10, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           13                             58
  CLUS_2                           81                            117
  CLUS_3                           35                            106
  CLUS_4                           47                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       46     72     31
  AMP PEAK 11(12P12.1) WILD-TYPE     99    126     60
D11V11, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           46                             99
  CLUS_2                           72                            126
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       17    107     25
  AMP PEAK 11(12P12.1) WILD-TYPE     86    141     58
D11V12, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           17                             86
  CLUS_2                          107                            141
  CLUS_3                           25                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12Q14.1) MUTATED        1      2      2      3
  AMP PEAK 12(12Q14.1) WILD-TYPE      4      7     10      3
D12V1, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            2                             10
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q14.1) MUTATED        2      2      4
  AMP PEAK 12(12Q14.1) WILD-TYPE     12      9      3
D12V2, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              9
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12Q14.1) MUTATED       30     42     64     32
  AMP PEAK 12(12Q14.1) WILD-TYPE     39    186     15    108
D12V3, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           30                             39
  CLUS_2                           42                            186
  CLUS_3                           64                             15
  CLUS_4                           32                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q14.1) MUTATED       32     67     48
  AMP PEAK 12(12Q14.1) WILD-TYPE    112     82    114
D12V4, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           32                            112
  CLUS_2                           67                             82
  CLUS_3                           48                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q14.1) MUTATED        9     23     20
  AMP PEAK 12(12Q14.1) WILD-TYPE     35     50     44
D12V5, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           23                             50
  CLUS_3                           20                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(12Q14.1) MUTATED       12     12     12     10      6
  AMP PEAK 12(12Q14.1) WILD-TYPE     28     21     33     21     26
D12V6, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           12                             28
  CLUS_2                           12                             21
  CLUS_3                           12                             33
  CLUS_4                           10                             21
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q14.1) MUTATED       24     72     72
  AMP PEAK 12(12Q14.1) WILD-TYPE    142    123     79
D12V7, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           24                            142
  CLUS_2                           72                            123
  CLUS_3                           72                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12Q14.1) MUTATED       13     31     37      6     37     31
  AMP PEAK 12(12Q14.1) WILD-TYPE     65     79     60     42     16     18
                                vv
clus                             CLUS_7
  AMP PEAK 12(12Q14.1) MUTATED       13
  AMP PEAK 12(12Q14.1) WILD-TYPE     64
D12V8, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           13                             65
  CLUS_2                           31                             79
  CLUS_3                           37                             60
  CLUS_4                            6                             42
  CLUS_5                           37                             16
  CLUS_6                           31                             18
  CLUS_7                           13                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q14.1) MUTATED       34    105     27
  AMP PEAK 12(12Q14.1) WILD-TYPE    155    123     66
D12V9, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           34                            155
  CLUS_2                          105                            123
  CLUS_3                           27                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12Q14.1) MUTATED       12     78     25     51
  AMP PEAK 12(12Q14.1) WILD-TYPE     59    120    116     49
D12V10, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           12                             59
  CLUS_2                           78                            120
  CLUS_3                           25                            116
  CLUS_4                           51                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q14.1) MUTATED       41     70     32
  AMP PEAK 12(12Q14.1) WILD-TYPE    104    128     59
D12V11, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           41                            104
  CLUS_2                           70                            128
  CLUS_3                           32                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q14.1) MUTATED       11    108     24
  AMP PEAK 12(12Q14.1) WILD-TYPE     92    140     59
D12V12, multiclass
        clus
vv       AMP PEAK 12(12Q14.1) MUTATED AMP PEAK 12(12Q14.1) WILD-TYPE
  CLUS_1                           11                             92
  CLUS_2                          108                            140
  CLUS_3                           24                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12Q15) MUTATED        1      1      2      3
  AMP PEAK 13(12Q15) WILD-TYPE      4      8     10      3
D13V1, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                          1                            4
  CLUS_2                          1                            8
  CLUS_3                          2                           10
  CLUS_4                          3                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED        2      1      4
  AMP PEAK 13(12Q15) WILD-TYPE     12     10      3
D13V2, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          1                           10
  CLUS_3                          4                            3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12Q15) MUTATED       30     44     63     34
  AMP PEAK 13(12Q15) WILD-TYPE     39    184     16    106
D13V3, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         30                           39
  CLUS_2                         44                          184
  CLUS_3                         63                           16
  CLUS_4                         34                          106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       31     69     50
  AMP PEAK 13(12Q15) WILD-TYPE    113     80    112
D13V4, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         31                          113
  CLUS_2                         69                           80
  CLUS_3                         50                          112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       10     28     19
  AMP PEAK 13(12Q15) WILD-TYPE     34     45     45
D13V5, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         10                           34
  CLUS_2                         28                           45
  CLUS_3                         19                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(12Q15) MUTATED       16     12     14     11      4
  AMP PEAK 13(12Q15) WILD-TYPE     24     21     31     20     28
D13V6, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         16                           24
  CLUS_2                         12                           21
  CLUS_3                         14                           31
  CLUS_4                         11                           20
  CLUS_5                          4                           28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       31     66     74
  AMP PEAK 13(12Q15) WILD-TYPE    135    129     77
D13V7, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         31                          135
  CLUS_2                         66                          129
  CLUS_3                         74                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(12Q15) MUTATED       17     28     37      6     37     31     15
  AMP PEAK 13(12Q15) WILD-TYPE     61     82     60     42     16     18     62
D13V8, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         17                           61
  CLUS_2                         28                           82
  CLUS_3                         37                           60
  CLUS_4                          6                           42
  CLUS_5                         37                           16
  CLUS_6                         31                           18
  CLUS_7                         15                           62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       37    108     25
  AMP PEAK 13(12Q15) WILD-TYPE    152    120     68
D13V9, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         37                          152
  CLUS_2                        108                          120
  CLUS_3                         25                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12Q15) MUTATED       11     76     31     52
  AMP PEAK 13(12Q15) WILD-TYPE     60    122    110     48
D13V10, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         11                           60
  CLUS_2                         76                          122
  CLUS_3                         31                          110
  CLUS_4                         52                           48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       43     72     31
  AMP PEAK 13(12Q15) WILD-TYPE    102    126     60
D13V11, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         43                          102
  CLUS_2                         72                          126
  CLUS_3                         31                           60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       14    106     26
  AMP PEAK 13(12Q15) WILD-TYPE     89    142     57
D13V12, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         14                           89
  CLUS_2                        106                          142
  CLUS_3                         26                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(14Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(14Q13.3) MUTATED        3      3      4      4
  AMP PEAK 14(14Q13.3) WILD-TYPE      2      6      8      2
D14V1, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            3                              6
  CLUS_3                            4                              8
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(14Q13.3) MUTATED        5      4      5
  AMP PEAK 14(14Q13.3) WILD-TYPE      9      7      2
D14V2, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            4                              7
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(14Q13.3) MUTATED       52     64     35     78
  AMP PEAK 14(14Q13.3) WILD-TYPE     17    164     44     62
D14V3, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           52                             17
  CLUS_2                           64                            164
  CLUS_3                           35                             44
  CLUS_4                           78                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(14Q13.3) MUTATED       42     80     79
  AMP PEAK 14(14Q13.3) WILD-TYPE    102     69     83
D14V4, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           42                            102
  CLUS_2                           80                             69
  CLUS_3                           79                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(14Q13.3) MUTATED       13     27     32
  AMP PEAK 14(14Q13.3) WILD-TYPE     31     46     32
D14V5, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           27                             46
  CLUS_3                           32                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(14Q13.3) MUTATED       17     15     17     10     13
  AMP PEAK 14(14Q13.3) WILD-TYPE     23     18     28     21     19
D14V6, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           17                             23
  CLUS_2                           15                             18
  CLUS_3                           17                             28
  CLUS_4                           10                             21
  CLUS_5                           13                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(14Q13.3) MUTATED       54    100     74
  AMP PEAK 14(14Q13.3) WILD-TYPE    112     95     77
D14V7, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           54                            112
  CLUS_2                          100                             95
  CLUS_3                           74                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(14Q13.3) MUTATED       34     57     63      9     42      8
  AMP PEAK 14(14Q13.3) WILD-TYPE     44     53     34     39     11     41
                                vv
clus                             CLUS_7
  AMP PEAK 14(14Q13.3) MUTATED       15
  AMP PEAK 14(14Q13.3) WILD-TYPE     62
D14V8, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           34                             44
  CLUS_2                           57                             53
  CLUS_3                           63                             34
  CLUS_4                            9                             39
  CLUS_5                           42                             11
  CLUS_6                            8                             41
  CLUS_7                           15                             62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(14Q13.3) MUTATED       54    125     46
  AMP PEAK 14(14Q13.3) WILD-TYPE    135    103     47
D14V9, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           54                            135
  CLUS_2                          125                            103
  CLUS_3                           46                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(14Q13.3) MUTATED       27    111     34     53
  AMP PEAK 14(14Q13.3) WILD-TYPE     44     87    107     47
D14V10, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           27                             44
  CLUS_2                          111                             87
  CLUS_3                           34                            107
  CLUS_4                           53                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(14Q13.3) MUTATED       56     96     41
  AMP PEAK 14(14Q13.3) WILD-TYPE     89    102     50
D14V11, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           56                             89
  CLUS_2                           96                            102
  CLUS_3                           41                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(14Q13.3) MUTATED       27    125     41
  AMP PEAK 14(14Q13.3) WILD-TYPE     76    123     42
D14V12, multiclass
        clus
vv       AMP PEAK 14(14Q13.3) MUTATED AMP PEAK 14(14Q13.3) WILD-TYPE
  CLUS_1                           27                             76
  CLUS_2                          125                            123
  CLUS_3                           41                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q12) MUTATED        3      5      3      5
  AMP PEAK 15(17Q12) WILD-TYPE      2      4      9      1
D15V1, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          5                            4
  CLUS_3                          3                            9
  CLUS_4                          5                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q12) MUTATED        4      6      6
  AMP PEAK 15(17Q12) WILD-TYPE     10      5      1
D15V2, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          6                            5
  CLUS_3                          6                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q12) MUTATED       38     52     42     94
  AMP PEAK 15(17Q12) WILD-TYPE     31    176     37     46
D15V3, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         38                           31
  CLUS_2                         52                          176
  CLUS_3                         42                           37
  CLUS_4                         94                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q12) MUTATED       31     73     88
  AMP PEAK 15(17Q12) WILD-TYPE    113     76     74
D15V4, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         31                          113
  CLUS_2                         73                           76
  CLUS_3                         88                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q12) MUTATED       16     37     27
  AMP PEAK 15(17Q12) WILD-TYPE     28     36     37
D15V5, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         16                           28
  CLUS_2                         37                           36
  CLUS_3                         27                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17Q12) MUTATED       23     11     26     11      9
  AMP PEAK 15(17Q12) WILD-TYPE     17     22     19     20     23
D15V6, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         23                           17
  CLUS_2                         11                           22
  CLUS_3                         26                           19
  CLUS_4                         11                           20
  CLUS_5                          9                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q12) MUTATED       52    111     62
  AMP PEAK 15(17Q12) WILD-TYPE    114     84     89
D15V7, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         52                          114
  CLUS_2                        111                           84
  CLUS_3                         62                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(17Q12) MUTATED       30     62     57      8     29     17     22
  AMP PEAK 15(17Q12) WILD-TYPE     48     48     40     40     24     32     55
D15V8, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         30                           48
  CLUS_2                         62                           48
  CLUS_3                         57                           40
  CLUS_4                          8                           40
  CLUS_5                         29                           24
  CLUS_6                         17                           32
  CLUS_7                         22                           55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q12) MUTATED       58    129     37
  AMP PEAK 15(17Q12) WILD-TYPE    131     99     56
D15V9, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         58                          131
  CLUS_2                        129                           99
  CLUS_3                         37                           56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q12) MUTATED       21    102     40     61
  AMP PEAK 15(17Q12) WILD-TYPE     50     96    101     39
D15V10, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         21                           50
  CLUS_2                        102                           96
  CLUS_3                         40                          101
  CLUS_4                         61                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q12) MUTATED       57     89     41
  AMP PEAK 15(17Q12) WILD-TYPE     88    109     50
D15V11, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         57                           88
  CLUS_2                         89                          109
  CLUS_3                         41                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q12) MUTATED       24    125     38
  AMP PEAK 15(17Q12) WILD-TYPE     79    123     45
D15V12, multiclass
        clus
vv       AMP PEAK 15(17Q12) MUTATED AMP PEAK 15(17Q12) WILD-TYPE
  CLUS_1                         24                           79
  CLUS_2                        125                          123
  CLUS_3                         38                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(17Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q23.1) MUTATED        3      8      4      4
  AMP PEAK 16(17Q23.1) WILD-TYPE      2      1      8      2
D16V1, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            8                              1
  CLUS_3                            4                              8
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.1) MUTATED        6      8      5
  AMP PEAK 16(17Q23.1) WILD-TYPE      8      3      2
D16V2, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            8                              3
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q23.1) MUTATED       35     67     47    100
  AMP PEAK 16(17Q23.1) WILD-TYPE     34    161     32     40
D16V3, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           35                             34
  CLUS_2                           67                            161
  CLUS_3                           47                             32
  CLUS_4                          100                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.1) MUTATED       40     73    100
  AMP PEAK 16(17Q23.1) WILD-TYPE    104     76     62
D16V4, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           40                            104
  CLUS_2                           73                             76
  CLUS_3                          100                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.1) MUTATED       16     38     31
  AMP PEAK 16(17Q23.1) WILD-TYPE     28     35     33
D16V5, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           38                             35
  CLUS_3                           31                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q23.1) MUTATED       24     11     26     12     12
  AMP PEAK 16(17Q23.1) WILD-TYPE     16     22     19     19     20
D16V6, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           24                             16
  CLUS_2                           11                             22
  CLUS_3                           26                             19
  CLUS_4                           12                             19
  CLUS_5                           12                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.1) MUTATED       62    127     59
  AMP PEAK 16(17Q23.1) WILD-TYPE    104     68     92
D16V7, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           62                            104
  CLUS_2                          127                             68
  CLUS_3                           59                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(17Q23.1) MUTATED       36     74     55      7     29     22
  AMP PEAK 16(17Q23.1) WILD-TYPE     42     36     42     41     24     27
                                vv
clus                             CLUS_7
  AMP PEAK 16(17Q23.1) MUTATED       25
  AMP PEAK 16(17Q23.1) WILD-TYPE     52
D16V8, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           36                             42
  CLUS_2                           74                             36
  CLUS_3                           55                             42
  CLUS_4                            7                             41
  CLUS_5                           29                             24
  CLUS_6                           22                             27
  CLUS_7                           25                             52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.1) MUTATED       68    136     43
  AMP PEAK 16(17Q23.1) WILD-TYPE    121     92     50
D16V9, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           68                            121
  CLUS_2                          136                             92
  CLUS_3                           43                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q23.1) MUTATED       26    111     48     62
  AMP PEAK 16(17Q23.1) WILD-TYPE     45     87     93     38
D16V10, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           26                             45
  CLUS_2                          111                             87
  CLUS_3                           48                             93
  CLUS_4                           62                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.1) MUTATED       65     94     46
  AMP PEAK 16(17Q23.1) WILD-TYPE     80    104     45
D16V11, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           65                             80
  CLUS_2                           94                            104
  CLUS_3                           46                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.1) MUTATED       28    134     43
  AMP PEAK 16(17Q23.1) WILD-TYPE     75    114     40
D16V12, multiclass
        clus
vv       AMP PEAK 16(17Q23.1) MUTATED AMP PEAK 16(17Q23.1) WILD-TYPE
  CLUS_1                           28                             75
  CLUS_2                          134                            114
  CLUS_3                           43                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(18Q11.2) MUTATED        1      1      1      3
  AMP PEAK 17(18Q11.2) WILD-TYPE      4      8     11      3
D17V1, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            1                              8
  CLUS_3                            1                             11
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q11.2) MUTATED        1      1      4
  AMP PEAK 17(18Q11.2) WILD-TYPE     13     10      3
D17V2, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             10
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(18Q11.2) MUTATED       22     26     24     31
  AMP PEAK 17(18Q11.2) WILD-TYPE     47    202     55    109
D17V3, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                           22                             47
  CLUS_2                           26                            202
  CLUS_3                           24                             55
  CLUS_4                           31                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q11.2) MUTATED       11     51     31
  AMP PEAK 17(18Q11.2) WILD-TYPE    133     98    131
D17V4, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                           11                            133
  CLUS_2                           51                             98
  CLUS_3                           31                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q11.2) MUTATED        6     11     19
  AMP PEAK 17(18Q11.2) WILD-TYPE     38     62     45
D17V5, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           11                             62
  CLUS_3                           19                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(18Q11.2) MUTATED        5      6      9     10      6
  AMP PEAK 17(18Q11.2) WILD-TYPE     35     27     36     21     26
D17V6, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                            5                             35
  CLUS_2                            6                             27
  CLUS_3                            9                             36
  CLUS_4                           10                             21
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q11.2) MUTATED       17     41     44
  AMP PEAK 17(18Q11.2) WILD-TYPE    149    154    107
D17V7, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                           17                            149
  CLUS_2                           41                            154
  CLUS_3                           44                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(18Q11.2) MUTATED        7     17     30      7     22      9
  AMP PEAK 17(18Q11.2) WILD-TYPE     71     93     67     41     31     40
                                vv
clus                             CLUS_7
  AMP PEAK 17(18Q11.2) MUTATED       10
  AMP PEAK 17(18Q11.2) WILD-TYPE     67
D17V8, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                            7                             71
  CLUS_2                           17                             93
  CLUS_3                           30                             67
  CLUS_4                            7                             41
  CLUS_5                           22                             31
  CLUS_6                            9                             40
  CLUS_7                           10                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q11.2) MUTATED       20     62     20
  AMP PEAK 17(18Q11.2) WILD-TYPE    169    166     73
D17V9, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                           20                            169
  CLUS_2                           62                            166
  CLUS_3                           20                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(18Q11.2) MUTATED        6     43     18     35
  AMP PEAK 17(18Q11.2) WILD-TYPE     65    155    123     65
D17V10, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                            6                             65
  CLUS_2                           43                            155
  CLUS_3                           18                            123
  CLUS_4                           35                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q11.2) MUTATED       28     47     16
  AMP PEAK 17(18Q11.2) WILD-TYPE    117    151     75
D17V11, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                           28                            117
  CLUS_2                           47                            151
  CLUS_3                           16                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q11.2) MUTATED        9     70     12
  AMP PEAK 17(18Q11.2) WILD-TYPE     94    178     71
D17V12, multiclass
        clus
vv       AMP PEAK 17(18Q11.2) MUTATED AMP PEAK 17(18Q11.2) WILD-TYPE
  CLUS_1                            9                             94
  CLUS_2                           70                            178
  CLUS_3                           12                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19Q12) MUTATED        1      3      0      2
  AMP PEAK 18(19Q12) WILD-TYPE      4      6     12      4
D18V1, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                          1                            4
  CLUS_2                          3                            6
  CLUS_3                          0                           12
  CLUS_4                          2                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q12) MUTATED        0      4      2
  AMP PEAK 18(19Q12) WILD-TYPE     14      7      5
D18V2, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                            7
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19Q12) MUTATED       22     34     41     40
  AMP PEAK 18(19Q12) WILD-TYPE     47    194     38    100
D18V3, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                         22                           47
  CLUS_2                         34                          194
  CLUS_3                         41                           38
  CLUS_4                         40                          100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q12) MUTATED       26     63     35
  AMP PEAK 18(19Q12) WILD-TYPE    118     86    127
D18V4, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                         26                          118
  CLUS_2                         63                           86
  CLUS_3                         35                          127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q12) MUTATED        8     17     15
  AMP PEAK 18(19Q12) WILD-TYPE     36     56     49
D18V5, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                          8                           36
  CLUS_2                         17                           56
  CLUS_3                         15                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(19Q12) MUTATED        5      6     15      7      7
  AMP PEAK 18(19Q12) WILD-TYPE     35     27     30     24     25
D18V6, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                          5                           35
  CLUS_2                          6                           27
  CLUS_3                         15                           30
  CLUS_4                          7                           24
  CLUS_5                          7                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q12) MUTATED       19     62     54
  AMP PEAK 18(19Q12) WILD-TYPE    147    133     97
D18V7, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                         19                          147
  CLUS_2                         62                          133
  CLUS_3                         54                           97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(19Q12) MUTATED        8     30     36     13     17     21     10
  AMP PEAK 18(19Q12) WILD-TYPE     70     80     61     35     36     28     67
D18V8, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                          8                           70
  CLUS_2                         30                           80
  CLUS_3                         36                           61
  CLUS_4                         13                           35
  CLUS_5                         17                           36
  CLUS_6                         21                           28
  CLUS_7                         10                           67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q12) MUTATED       30     85     22
  AMP PEAK 18(19Q12) WILD-TYPE    159    143     71
D18V9, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                         30                          159
  CLUS_2                         85                          143
  CLUS_3                         22                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19Q12) MUTATED       14     60     23     40
  AMP PEAK 18(19Q12) WILD-TYPE     57    138    118     60
D18V10, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                         14                           57
  CLUS_2                         60                          138
  CLUS_3                         23                          118
  CLUS_4                         40                           60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q12) MUTATED       31     66     23
  AMP PEAK 18(19Q12) WILD-TYPE    114    132     68
D18V11, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                         31                          114
  CLUS_2                         66                          132
  CLUS_3                         23                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q12) MUTATED       19     88     13
  AMP PEAK 18(19Q12) WILD-TYPE     84    160     70
D18V12, multiclass
        clus
vv       AMP PEAK 18(19Q12) MUTATED AMP PEAK 18(19Q12) WILD-TYPE
  CLUS_1                         19                           84
  CLUS_2                         88                          160
  CLUS_3                         13                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20Q13.33) MUTATED        2      2      2      6
  AMP PEAK 19(20Q13.33) WILD-TYPE      3      7     10      0
D19V1, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             2                               7
  CLUS_3                             2                              10
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED        3      3      6
  AMP PEAK 19(20Q13.33) WILD-TYPE     11      8      1
D19V2, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             3                               8
  CLUS_3                             6                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20Q13.33) MUTATED       45     69     47     83
  AMP PEAK 19(20Q13.33) WILD-TYPE     24    159     32     57
D19V3, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            45                              24
  CLUS_2                            69                             159
  CLUS_3                            47                              32
  CLUS_4                            83                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       48     90     75
  AMP PEAK 19(20Q13.33) WILD-TYPE     96     59     87
D19V4, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            48                              96
  CLUS_2                            90                              59
  CLUS_3                            75                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       15     35     37
  AMP PEAK 19(20Q13.33) WILD-TYPE     29     38     27
D19V5, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            15                              29
  CLUS_2                            35                              38
  CLUS_3                            37                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q13.33) MUTATED       18     17     25     16     11
  AMP PEAK 19(20Q13.33) WILD-TYPE     22     16     20     15     21
D19V6, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            18                              22
  CLUS_2                            17                              16
  CLUS_3                            25                              20
  CLUS_4                            16                              15
  CLUS_5                            11                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       60     97     84
  AMP PEAK 19(20Q13.33) WILD-TYPE    106     98     67
D19V7, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            60                             106
  CLUS_2                            97                              98
  CLUS_3                            84                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20Q13.33) MUTATED       27     48     67     22     38     18
  AMP PEAK 19(20Q13.33) WILD-TYPE     51     62     30     26     15     31
                                 vv
clus                              CLUS_7
  AMP PEAK 19(20Q13.33) MUTATED       21
  AMP PEAK 19(20Q13.33) WILD-TYPE     56
D19V8, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            27                              51
  CLUS_2                            48                              62
  CLUS_3                            67                              30
  CLUS_4                            22                              26
  CLUS_5                            38                              15
  CLUS_6                            18                              31
  CLUS_7                            21                              56
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       65    135     40
  AMP PEAK 19(20Q13.33) WILD-TYPE    124     93     53
D19V9, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            65                             124
  CLUS_2                           135                              93
  CLUS_3                            40                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20Q13.33) MUTATED       23    104     50     63
  AMP PEAK 19(20Q13.33) WILD-TYPE     48     94     91     37
D19V10, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            23                              48
  CLUS_2                           104                              94
  CLUS_3                            50                              91
  CLUS_4                            63                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       56    106     42
  AMP PEAK 19(20Q13.33) WILD-TYPE     89     92     49
D19V11, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            56                              89
  CLUS_2                           106                              92
  CLUS_3                            42                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.33) MUTATED       29    139     36
  AMP PEAK 19(20Q13.33) WILD-TYPE     74    109     47
D19V12, multiclass
        clus
vv       AMP PEAK 19(20Q13.33) MUTATED AMP PEAK 19(20Q13.33) WILD-TYPE
  CLUS_1                            29                              74
  CLUS_2                           139                             109
  CLUS_3                            36                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(22Q11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(22Q11.22) MUTATED        1      1      1      3
  AMP PEAK 20(22Q11.22) WILD-TYPE      4      8     11      3
D20V1, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             1                               8
  CLUS_3                             1                              11
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q11.22) MUTATED        1      2      3
  AMP PEAK 20(22Q11.22) WILD-TYPE     13      9      4
D20V2, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             2                               9
  CLUS_3                             3                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(22Q11.22) MUTATED        7     22     17     42
  AMP PEAK 20(22Q11.22) WILD-TYPE     62    206     62     98
D20V3, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                             7                              62
  CLUS_2                            22                             206
  CLUS_3                            17                              62
  CLUS_4                            42                              98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q11.22) MUTATED       21     30     27
  AMP PEAK 20(22Q11.22) WILD-TYPE    123    119    135
D20V4, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                            21                             123
  CLUS_2                            30                             119
  CLUS_3                            27                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q11.22) MUTATED        3     20     14
  AMP PEAK 20(22Q11.22) WILD-TYPE     41     53     50
D20V5, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                             3                              41
  CLUS_2                            20                              53
  CLUS_3                            14                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(22Q11.22) MUTATED       10      6     13      5      3
  AMP PEAK 20(22Q11.22) WILD-TYPE     30     27     32     26     29
D20V6, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                            10                              30
  CLUS_2                             6                              27
  CLUS_3                            13                              32
  CLUS_4                             5                              26
  CLUS_5                             3                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q11.22) MUTATED       23     42     22
  AMP PEAK 20(22Q11.22) WILD-TYPE    143    153    129
D20V7, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                            23                             143
  CLUS_2                            42                             153
  CLUS_3                            22                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(22Q11.22) MUTATED        9     21     26      4      9      9
  AMP PEAK 20(22Q11.22) WILD-TYPE     69     89     71     44     44     40
                                 vv
clus                              CLUS_7
  AMP PEAK 20(22Q11.22) MUTATED        9
  AMP PEAK 20(22Q11.22) WILD-TYPE     68
D20V8, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                             9                              69
  CLUS_2                            21                              89
  CLUS_3                            26                              71
  CLUS_4                             4                              44
  CLUS_5                             9                              44
  CLUS_6                             9                              40
  CLUS_7                             9                              68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q11.22) MUTATED       23     47     18
  AMP PEAK 20(22Q11.22) WILD-TYPE    166    181     75
D20V9, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                            23                             166
  CLUS_2                            47                             181
  CLUS_3                            18                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(22Q11.22) MUTATED       11     33     17     27
  AMP PEAK 20(22Q11.22) WILD-TYPE     60    165    124     73
D20V10, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                            11                              60
  CLUS_2                            33                             165
  CLUS_3                            17                             124
  CLUS_4                            27                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q11.22) MUTATED       22     38     17
  AMP PEAK 20(22Q11.22) WILD-TYPE    123    160     74
D20V11, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                            22                             123
  CLUS_2                            38                             160
  CLUS_3                            17                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(22Q11.22) MUTATED       10     54     13
  AMP PEAK 20(22Q11.22) WILD-TYPE     93    194     70
D20V12, multiclass
        clus
vv       AMP PEAK 20(22Q11.22) MUTATED AMP PEAK 20(22Q11.22) WILD-TYPE
  CLUS_1                            10                              93
  CLUS_2                            54                             194
  CLUS_3                            13                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XQ28) MUTATED        3      2      3      4
  AMP PEAK 21(XQ28) WILD-TYPE      2      7      9      2
D21V1, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         2                           7
  CLUS_3                         3                           9
  CLUS_4                         4                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ28) MUTATED        4      3      5
  AMP PEAK 21(XQ28) WILD-TYPE     10      8      2
D21V2, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                         3                           8
  CLUS_3                         5                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XQ28) MUTATED       24     37     26     70
  AMP PEAK 21(XQ28) WILD-TYPE     45    191     53     70
D21V3, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        24                          45
  CLUS_2                        37                         191
  CLUS_3                        26                          53
  CLUS_4                        70                          70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ28) MUTATED       27     45     62
  AMP PEAK 21(XQ28) WILD-TYPE    117    104    100
D21V4, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        27                         117
  CLUS_2                        45                         104
  CLUS_3                        62                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ28) MUTATED       10     19     23
  AMP PEAK 21(XQ28) WILD-TYPE     34     54     41
D21V5, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        10                          34
  CLUS_2                        19                          54
  CLUS_3                        23                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XQ28) MUTATED       11      6     16     10      9
  AMP PEAK 21(XQ28) WILD-TYPE     29     27     29     21     23
D21V6, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        11                          29
  CLUS_2                         6                          27
  CLUS_3                        16                          29
  CLUS_4                        10                          21
  CLUS_5                         9                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ28) MUTATED       37     83     36
  AMP PEAK 21(XQ28) WILD-TYPE    129    112    115
D21V7, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        37                         129
  CLUS_2                        83                         112
  CLUS_3                        36                         115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(XQ28) MUTATED       20     49     38      6     14     14     15
  AMP PEAK 21(XQ28) WILD-TYPE     58     61     59     42     39     35     62
D21V8, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        20                          58
  CLUS_2                        49                          61
  CLUS_3                        38                          59
  CLUS_4                         6                          42
  CLUS_5                        14                          39
  CLUS_6                        14                          35
  CLUS_7                        15                          62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ28) MUTATED       43     74     37
  AMP PEAK 21(XQ28) WILD-TYPE    146    154     56
D21V9, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        43                         146
  CLUS_2                        74                         154
  CLUS_3                        37                          56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XQ28) MUTATED       17     70     34     33
  AMP PEAK 21(XQ28) WILD-TYPE     54    128    107     67
D21V10, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        17                          54
  CLUS_2                        70                         128
  CLUS_3                        34                         107
  CLUS_4                        33                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ28) MUTATED       44     53     33
  AMP PEAK 21(XQ28) WILD-TYPE    101    145     58
D21V11, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        44                         101
  CLUS_2                        53                         145
  CLUS_3                        33                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ28) MUTATED       15     85     30
  AMP PEAK 21(XQ28) WILD-TYPE     88    163     53
D21V12, multiclass
        clus
vv       AMP PEAK 21(XQ28) MUTATED AMP PEAK 21(XQ28) WILD-TYPE
  CLUS_1                        15                          88
  CLUS_2                        85                         163
  CLUS_3                        30                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED        1      3      1      2
  DEL PEAK  1(1P36.11) WILD-TYPE      4      6     11      4
D22V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            1                             11
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED        1      3      3
  DEL PEAK  1(1P36.11) WILD-TYPE     13      8      4
D22V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              8
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       31     45     29     20
  DEL PEAK  1(1P36.11) WILD-TYPE     38    183     50    120
D22V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           31                             38
  CLUS_2                           45                            183
  CLUS_3                           29                             50
  CLUS_4                           20                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       14     45     48
  DEL PEAK  1(1P36.11) WILD-TYPE    130    104    114
D22V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           14                            130
  CLUS_2                           45                            104
  CLUS_3                           48                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED        8     20     21
  DEL PEAK  1(1P36.11) WILD-TYPE     36     53     43
D22V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           20                             53
  CLUS_3                           21                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        6     12     14     11      6
  DEL PEAK  1(1P36.11) WILD-TYPE     34     21     31     20     26
D22V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            6                             34
  CLUS_2                           12                             21
  CLUS_3                           14                             31
  CLUS_4                           11                             20
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       18     49     55
  DEL PEAK  1(1P36.11) WILD-TYPE    148    146     96
D22V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           18                            148
  CLUS_2                           49                            146
  CLUS_3                           55                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       11     27     20     11     26     21
  DEL PEAK  1(1P36.11) WILD-TYPE     67     83     77     37     27     28
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED        6
  DEL PEAK  1(1P36.11) WILD-TYPE     71
D22V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           11                             67
  CLUS_2                           27                             83
  CLUS_3                           20                             77
  CLUS_4                           11                             37
  CLUS_5                           26                             27
  CLUS_6                           21                             28
  CLUS_7                            6                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       38     67     16
  DEL PEAK  1(1P36.11) WILD-TYPE    151    161     77
D22V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           38                            151
  CLUS_2                           67                            161
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       17     57     23     24
  DEL PEAK  1(1P36.11) WILD-TYPE     54    141    118     76
D22V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           57                            141
  CLUS_3                           23                            118
  CLUS_4                           24                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       33     56     12
  DEL PEAK  1(1P36.11) WILD-TYPE    112    142     79
D22V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           33                            112
  CLUS_2                           56                            142
  CLUS_3                           12                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       18     71     12
  DEL PEAK  1(1P36.11) WILD-TYPE     85    177     71
D22V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           71                            177
  CLUS_3                           12                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  2(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED        0      3      3      3
  DEL PEAK  2(1P13.1) WILD-TYPE      5      6      9      3
D23V1, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           3                             6
  CLUS_3                           3                             9
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        3      3      3
  DEL PEAK  2(1P13.1) WILD-TYPE     11      8      4
D23V2, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             8
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       35     46     36     32
  DEL PEAK  2(1P13.1) WILD-TYPE     34    182     43    108
D23V3, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          35                            34
  CLUS_2                          46                           182
  CLUS_3                          36                            43
  CLUS_4                          32                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       22     51     50
  DEL PEAK  2(1P13.1) WILD-TYPE    122     98    112
D23V4, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          22                           122
  CLUS_2                          51                            98
  CLUS_3                          50                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       12     16     25
  DEL PEAK  2(1P13.1) WILD-TYPE     32     57     39
D23V5, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          16                            57
  CLUS_3                          25                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.1) MUTATED        7     16     13     10      7
  DEL PEAK  2(1P13.1) WILD-TYPE     33     17     32     21     25
D23V6, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           7                            33
  CLUS_2                          16                            17
  CLUS_3                          13                            32
  CLUS_4                          10                            21
  CLUS_5                           7                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       34     47     66
  DEL PEAK  2(1P13.1) WILD-TYPE    132    148     85
D23V7, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          34                           132
  CLUS_2                          47                           148
  CLUS_3                          66                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED       21     26     27     20     27     17
  DEL PEAK  2(1P13.1) WILD-TYPE     57     84     70     28     26     32
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P13.1) MUTATED        9
  DEL PEAK  2(1P13.1) WILD-TYPE     68
D23V8, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          21                            57
  CLUS_2                          26                            84
  CLUS_3                          27                            70
  CLUS_4                          20                            28
  CLUS_5                          27                            26
  CLUS_6                          17                            32
  CLUS_7                           9                            68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       46     74     26
  DEL PEAK  2(1P13.1) WILD-TYPE    143    154     67
D23V9, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          46                           143
  CLUS_2                          74                           154
  CLUS_3                          26                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       15     73     29     29
  DEL PEAK  2(1P13.1) WILD-TYPE     56    125    112     71
D23V10, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          15                            56
  CLUS_2                          73                           125
  CLUS_3                          29                           112
  CLUS_4                          29                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       37     56     24
  DEL PEAK  2(1P13.1) WILD-TYPE    108    142     67
D23V11, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          37                           108
  CLUS_2                          56                           142
  CLUS_3                          24                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       27     70     20
  DEL PEAK  2(1P13.1) WILD-TYPE     76    178     63
D23V12, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          27                            76
  CLUS_2                          70                           178
  CLUS_3                          20                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        0      1      2      0
  DEL PEAK  3(2Q22.1) WILD-TYPE      5      8     10      6
D24V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           1                             8
  CLUS_3                           2                            10
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        2      1      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     12     10      7
D24V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           1                            10
  CLUS_3                           0                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       10     10     12     14
  DEL PEAK  3(2Q22.1) WILD-TYPE     59    218     67    126
D24V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          10                            59
  CLUS_2                          10                           218
  CLUS_3                          12                            67
  CLUS_4                          14                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        5     22     13
  DEL PEAK  3(2Q22.1) WILD-TYPE    139    127    149
D24V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           5                           139
  CLUS_2                          22                           127
  CLUS_3                          13                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        1      7      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     43     66     56
D24V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                            43
  CLUS_2                           7                            66
  CLUS_3                           8                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        2      3      6      3      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     38     30     39     28     30
D24V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           3                            30
  CLUS_3                           6                            39
  CLUS_4                           3                            28
  CLUS_5                           2                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        8     21     17
  DEL PEAK  3(2Q22.1) WILD-TYPE    158    174    134
D24V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                           158
  CLUS_2                          21                           174
  CLUS_3                          17                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        6      8     10      2      8     10
  DEL PEAK  3(2Q22.1) WILD-TYPE     72    102     87     46     45     39
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q22.1) MUTATED        2
  DEL PEAK  3(2Q22.1) WILD-TYPE     75
D24V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                            72
  CLUS_2                           8                           102
  CLUS_3                          10                            87
  CLUS_4                           2                            46
  CLUS_5                           8                            45
  CLUS_6                          10                            39
  CLUS_7                           2                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        9     26     10
  DEL PEAK  3(2Q22.1) WILD-TYPE    180    202     83
D24V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           9                           180
  CLUS_2                          26                           202
  CLUS_3                          10                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        3     18      7     17
  DEL PEAK  3(2Q22.1) WILD-TYPE     68    180    134     83
D24V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            68
  CLUS_2                          18                           180
  CLUS_3                           7                           134
  CLUS_4                          17                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       14     16      7
  DEL PEAK  3(2Q22.1) WILD-TYPE    131    182     84
D24V11, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          14                           131
  CLUS_2                          16                           182
  CLUS_3                           7                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        4     27      6
  DEL PEAK  3(2Q22.1) WILD-TYPE     99    221     77
D24V12, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            99
  CLUS_2                          27                           221
  CLUS_3                           6                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  4(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P26.2) MUTATED        1      4      4      5
  DEL PEAK  4(3P26.2) WILD-TYPE      4      5      8      1
D25V1, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           4                             5
  CLUS_3                           4                             8
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED        5      4      5
  DEL PEAK  4(3P26.2) WILD-TYPE      9      7      2
D25V2, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           4                             7
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P26.2) MUTATED       40     76     45     75
  DEL PEAK  4(3P26.2) WILD-TYPE     29    152     34     65
D25V3, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          40                            29
  CLUS_2                          76                           152
  CLUS_3                          45                            34
  CLUS_4                          75                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       51     88     68
  DEL PEAK  4(3P26.2) WILD-TYPE     93     61     94
D25V4, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          51                            93
  CLUS_2                          88                            61
  CLUS_3                          68                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       16     35     38
  DEL PEAK  4(3P26.2) WILD-TYPE     28     38     26
D25V5, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          16                            28
  CLUS_2                          35                            38
  CLUS_3                          38                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P26.2) MUTATED       19     12     26     18     14
  DEL PEAK  4(3P26.2) WILD-TYPE     21     21     19     13     18
D25V6, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          19                            21
  CLUS_2                          12                            21
  CLUS_3                          26                            19
  CLUS_4                          18                            13
  CLUS_5                          14                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       62     95     76
  DEL PEAK  4(3P26.2) WILD-TYPE    104    100     75
D25V7, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          62                           104
  CLUS_2                          95                           100
  CLUS_3                          76                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P26.2) MUTATED       31     40     66     15     35     26
  DEL PEAK  4(3P26.2) WILD-TYPE     47     70     31     33     18     23
                               vv
clus                            CLUS_7
  DEL PEAK  4(3P26.2) MUTATED       20
  DEL PEAK  4(3P26.2) WILD-TYPE     57
D25V8, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          31                            47
  CLUS_2                          40                            70
  CLUS_3                          66                            31
  CLUS_4                          15                            33
  CLUS_5                          35                            18
  CLUS_6                          26                            23
  CLUS_7                          20                            57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       62    115     54
  DEL PEAK  4(3P26.2) WILD-TYPE    127    113     39
D25V9, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          62                           127
  CLUS_2                         115                           113
  CLUS_3                          54                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P26.2) MUTATED       29     86     52     64
  DEL PEAK  4(3P26.2) WILD-TYPE     42    112     89     36
D25V10, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          29                            42
  CLUS_2                          86                           112
  CLUS_3                          52                            89
  CLUS_4                          64                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       68     93     39
  DEL PEAK  4(3P26.2) WILD-TYPE     77    105     52
D25V11, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          68                            77
  CLUS_2                          93                           105
  CLUS_3                          39                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       31    131     38
  DEL PEAK  4(3P26.2) WILD-TYPE     72    117     45
D25V12, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          31                            72
  CLUS_2                         131                           117
  CLUS_3                          38                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  5(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        1      5      3      4
  DEL PEAK  5(3P21.31) WILD-TYPE      4      4      9      2
D26V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            5                              4
  CLUS_3                            3                              9
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        3      6      4
  DEL PEAK  5(3P21.31) WILD-TYPE     11      5      3
D26V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            6                              5
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       42     74     50     80
  DEL PEAK  5(3P21.31) WILD-TYPE     27    154     29     60
D26V3, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           42                             27
  CLUS_2                           74                            154
  CLUS_3                           50                             29
  CLUS_4                           80                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       44    101     71
  DEL PEAK  5(3P21.31) WILD-TYPE    100     48     91
D26V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                          101                             48
  CLUS_3                           71                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       15     34     38
  DEL PEAK  5(3P21.31) WILD-TYPE     29     39     26
D26V5, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           15                             29
  CLUS_2                           34                             39
  CLUS_3                           38                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       17     11     26     18     15
  DEL PEAK  5(3P21.31) WILD-TYPE     23     22     19     13     17
D26V6, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           17                             23
  CLUS_2                           11                             22
  CLUS_3                           26                             19
  CLUS_4                           18                             13
  CLUS_5                           15                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       60    100     82
  DEL PEAK  5(3P21.31) WILD-TYPE    106     95     69
D26V7, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           60                            106
  CLUS_2                          100                             95
  CLUS_3                           82                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       28     44     70     15     37     29
  DEL PEAK  5(3P21.31) WILD-TYPE     50     66     27     33     16     20
                                vv
clus                             CLUS_7
  DEL PEAK  5(3P21.31) MUTATED       19
  DEL PEAK  5(3P21.31) WILD-TYPE     58
D26V8, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           28                             50
  CLUS_2                           44                             66
  CLUS_3                           70                             27
  CLUS_4                           15                             33
  CLUS_5                           37                             16
  CLUS_6                           29                             20
  CLUS_7                           19                             58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       64    125     52
  DEL PEAK  5(3P21.31) WILD-TYPE    125    103     41
D26V9, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           64                            125
  CLUS_2                          125                            103
  CLUS_3                           52                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       31     93     48     69
  DEL PEAK  5(3P21.31) WILD-TYPE     40    105     93     31
D26V10, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           31                             40
  CLUS_2                           93                            105
  CLUS_3                           48                             93
  CLUS_4                           69                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       67    101     42
  DEL PEAK  5(3P21.31) WILD-TYPE     78     97     49
D26V11, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           67                             78
  CLUS_2                          101                             97
  CLUS_3                           42                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       31    140     39
  DEL PEAK  5(3P21.31) WILD-TYPE     72    108     44
D26V12, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           31                             72
  CLUS_2                          140                            108
  CLUS_3                           39                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  6(3Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q11.1) MUTATED        0      1      2      2
  DEL PEAK  6(3Q11.1) WILD-TYPE      5      8     10      4
D27V1, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           1                             8
  CLUS_3                           2                            10
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED        2      1      2
  DEL PEAK  6(3Q11.1) WILD-TYPE     12     10      5
D27V2, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           1                            10
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q11.1) MUTATED       29     54     17     40
  DEL PEAK  6(3Q11.1) WILD-TYPE     40    174     62    100
D27V3, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          29                            40
  CLUS_2                          54                           174
  CLUS_3                          17                            62
  CLUS_4                          40                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       29     55     47
  DEL PEAK  6(3Q11.1) WILD-TYPE    115     94    115
D27V4, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          29                           115
  CLUS_2                          55                            94
  CLUS_3                          47                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       13     22     22
  DEL PEAK  6(3Q11.1) WILD-TYPE     31     51     42
D27V5, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          13                            31
  CLUS_2                          22                            51
  CLUS_3                          22                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q11.1) MUTATED       13     10     12      9     13
  DEL PEAK  6(3Q11.1) WILD-TYPE     27     23     33     22     19
D27V6, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          13                            27
  CLUS_2                          10                            23
  CLUS_3                          12                            33
  CLUS_4                           9                            22
  CLUS_5                          13                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       45     41     52
  DEL PEAK  6(3Q11.1) WILD-TYPE    121    154     99
D27V7, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          45                           121
  CLUS_2                          41                           154
  CLUS_3                          52                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q11.1) MUTATED       20     25     23     17     22     17
  DEL PEAK  6(3Q11.1) WILD-TYPE     58     85     74     31     31     32
                               vv
clus                            CLUS_7
  DEL PEAK  6(3Q11.1) MUTATED       14
  DEL PEAK  6(3Q11.1) WILD-TYPE     63
D27V8, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          20                            58
  CLUS_2                          25                            85
  CLUS_3                          23                            74
  CLUS_4                          17                            31
  CLUS_5                          22                            31
  CLUS_6                          17                            32
  CLUS_7                          14                            63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       49     57     33
  DEL PEAK  6(3Q11.1) WILD-TYPE    140    171     60
D27V9, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          49                           140
  CLUS_2                          57                           171
  CLUS_3                          33                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q11.1) MUTATED       23     54     36     26
  DEL PEAK  6(3Q11.1) WILD-TYPE     48    144    105     74
D27V10, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          23                            48
  CLUS_2                          54                           144
  CLUS_3                          36                           105
  CLUS_4                          26                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       48     55     25
  DEL PEAK  6(3Q11.1) WILD-TYPE     97    143     66
D27V11, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          48                            97
  CLUS_2                          55                           143
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       28     76     24
  DEL PEAK  6(3Q11.1) WILD-TYPE     75    172     59
D27V12, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          28                            75
  CLUS_2                          76                           172
  CLUS_3                          24                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  7(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED        0      1      2      2
  DEL PEAK  7(3Q29) WILD-TYPE      5      8     10      4
D28V1, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         0                           5
  CLUS_2                         1                           8
  CLUS_3                         2                          10
  CLUS_4                         2                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED        2      1      2
  DEL PEAK  7(3Q29) WILD-TYPE     12     10      5
D28V2, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         2                          12
  CLUS_2                         1                          10
  CLUS_3                         2                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       31     50     20     34
  DEL PEAK  7(3Q29) WILD-TYPE     38    178     59    106
D28V3, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        31                          38
  CLUS_2                        50                         178
  CLUS_3                        20                          59
  CLUS_4                        34                         106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       24     51     49
  DEL PEAK  7(3Q29) WILD-TYPE    120     98    113
D28V4, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        24                         120
  CLUS_2                        51                          98
  CLUS_3                        49                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       19     18     18
  DEL PEAK  7(3Q29) WILD-TYPE     25     55     46
D28V5, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        19                          25
  CLUS_2                        18                          55
  CLUS_3                        18                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q29) MUTATED       13     13      8      6     15
  DEL PEAK  7(3Q29) WILD-TYPE     27     20     37     25     17
D28V6, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        13                          27
  CLUS_2                        13                          20
  CLUS_3                         8                          37
  CLUS_4                         6                          25
  CLUS_5                        15                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       44     27     61
  DEL PEAK  7(3Q29) WILD-TYPE    122    168     90
D28V7, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        44                         122
  CLUS_2                        27                         168
  CLUS_3                        61                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(3Q29) MUTATED       24     19     13     23     29     13     11
  DEL PEAK  7(3Q29) WILD-TYPE     54     91     84     25     24     36     66
D28V8, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        24                          54
  CLUS_2                        19                          91
  CLUS_3                        13                          84
  CLUS_4                        23                          25
  CLUS_5                        29                          24
  CLUS_6                        13                          36
  CLUS_7                        11                          66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       52     56     25
  DEL PEAK  7(3Q29) WILD-TYPE    137    172     68
D28V9, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        52                         137
  CLUS_2                        56                         172
  CLUS_3                        25                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       25     56     34     18
  DEL PEAK  7(3Q29) WILD-TYPE     46    142    107     82
D28V10, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        25                          46
  CLUS_2                        56                         142
  CLUS_3                        34                         107
  CLUS_4                        18                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       47     53     19
  DEL PEAK  7(3Q29) WILD-TYPE     98    145     72
D28V11, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        47                          98
  CLUS_2                        53                         145
  CLUS_3                        19                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       30     61     28
  DEL PEAK  7(3Q29) WILD-TYPE     73    187     55
D28V12, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        30                          73
  CLUS_2                        61                         187
  CLUS_3                        28                          55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  8(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        1      1      2      2
  DEL PEAK  8(4P16.3) WILD-TYPE      4      8     10      4
D29V1, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           1                             8
  CLUS_3                           2                            10
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        2      2      2
  DEL PEAK  8(4P16.3) WILD-TYPE     12      9      5
D29V2, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           2                             9
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       23     39     26     43
  DEL PEAK  8(4P16.3) WILD-TYPE     46    189     53     97
D29V3, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          23                            46
  CLUS_2                          39                           189
  CLUS_3                          26                            53
  CLUS_4                          43                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       27     55     33
  DEL PEAK  8(4P16.3) WILD-TYPE    117     94    129
D29V4, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          27                           117
  CLUS_2                          55                            94
  CLUS_3                          33                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       10     17     17
  DEL PEAK  8(4P16.3) WILD-TYPE     34     56     47
D29V5, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          10                            34
  CLUS_2                          17                            56
  CLUS_3                          17                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED       13     11      8      6      6
  DEL PEAK  8(4P16.3) WILD-TYPE     27     22     37     25     26
D29V6, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          13                            27
  CLUS_2                          11                            22
  CLUS_3                           8                            37
  CLUS_4                           6                            25
  CLUS_5                           6                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       29     53     48
  DEL PEAK  8(4P16.3) WILD-TYPE    137    142    103
D29V7, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          29                           137
  CLUS_2                          53                           142
  CLUS_3                          48                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED       14     21     43      5     23     11
  DEL PEAK  8(4P16.3) WILD-TYPE     64     89     54     43     30     38
                               vv
clus                            CLUS_7
  DEL PEAK  8(4P16.3) MUTATED       13
  DEL PEAK  8(4P16.3) WILD-TYPE     64
D29V8, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          14                            64
  CLUS_2                          21                            89
  CLUS_3                          43                            54
  CLUS_4                           5                            43
  CLUS_5                          23                            30
  CLUS_6                          11                            38
  CLUS_7                          13                            64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       26     79     25
  DEL PEAK  8(4P16.3) WILD-TYPE    163    149     68
D29V9, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          26                           163
  CLUS_2                          79                           149
  CLUS_3                          25                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        6     56     27     41
  DEL PEAK  8(4P16.3) WILD-TYPE     65    142    114     59
D29V10, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           6                            65
  CLUS_2                          56                           142
  CLUS_3                          27                           114
  CLUS_4                          41                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       34     53     25
  DEL PEAK  8(4P16.3) WILD-TYPE    111    145     66
D29V11, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          34                           111
  CLUS_2                          53                           145
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       14     80     18
  DEL PEAK  8(4P16.3) WILD-TYPE     89    168     65
D29V12, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          14                            89
  CLUS_2                          80                           168
  CLUS_3                          18                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  9(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED        3      2      1      5
  DEL PEAK  9(4Q34.3) WILD-TYPE      2      7     11      1
D30V1, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           2                             7
  CLUS_3                           1                            11
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED        2      3      6
  DEL PEAK  9(4Q34.3) WILD-TYPE     12      8      1
D30V2, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                             8
  CLUS_3                           6                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       40     49     42     57
  DEL PEAK  9(4Q34.3) WILD-TYPE     29    179     37     83
D30V3, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          40                            29
  CLUS_2                          49                           179
  CLUS_3                          42                            37
  CLUS_4                          57                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       27     87     49
  DEL PEAK  9(4Q34.3) WILD-TYPE    117     62    113
D30V4, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          27                           117
  CLUS_2                          87                            62
  CLUS_3                          49                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       11     26     28
  DEL PEAK  9(4Q34.3) WILD-TYPE     33     47     36
D30V5, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          26                            47
  CLUS_3                          28                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q34.3) MUTATED       13     12     21     12      7
  DEL PEAK  9(4Q34.3) WILD-TYPE     27     21     24     19     25
D30V6, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          13                            27
  CLUS_2                          12                            21
  CLUS_3                          21                            24
  CLUS_4                          12                            19
  CLUS_5                           7                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       35     73     78
  DEL PEAK  9(4Q34.3) WILD-TYPE    131    122     73
D30V7, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          35                           131
  CLUS_2                          73                           122
  CLUS_3                          78                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q34.3) MUTATED       15     26     56      8     36     29
  DEL PEAK  9(4Q34.3) WILD-TYPE     63     84     41     40     17     20
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q34.3) MUTATED       16
  DEL PEAK  9(4Q34.3) WILD-TYPE     61
D30V8, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          15                            63
  CLUS_2                          26                            84
  CLUS_3                          56                            41
  CLUS_4                           8                            40
  CLUS_5                          36                            17
  CLUS_6                          29                            20
  CLUS_7                          16                            61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       39    117     30
  DEL PEAK  9(4Q34.3) WILD-TYPE    150    111     63
D30V9, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          39                           150
  CLUS_2                         117                           111
  CLUS_3                          30                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       12     81     29     64
  DEL PEAK  9(4Q34.3) WILD-TYPE     59    117    112     36
D30V10, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          12                            59
  CLUS_2                          81                           117
  CLUS_3                          29                           112
  CLUS_4                          64                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       43     86     30
  DEL PEAK  9(4Q34.3) WILD-TYPE    102    112     61
D30V11, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          43                           102
  CLUS_2                          86                           112
  CLUS_3                          30                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       20    119     20
  DEL PEAK  9(4Q34.3) WILD-TYPE     83    129     63
D30V12, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          20                            83
  CLUS_2                         119                           129
  CLUS_3                          20                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 10(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED        2      3      4      5
  DEL PEAK 10(5Q12.1) WILD-TYPE      3      6      8      1
D31V1, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           3                             6
  CLUS_3                           4                             8
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED        4      5      5
  DEL PEAK 10(5Q12.1) WILD-TYPE     10      6      2
D31V2, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           5                             6
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       27     38     38     74
  DEL PEAK 10(5Q12.1) WILD-TYPE     42    190     41     66
D31V3, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          27                            42
  CLUS_2                          38                           190
  CLUS_3                          38                            41
  CLUS_4                          74                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       25     70     55
  DEL PEAK 10(5Q12.1) WILD-TYPE    119     79    107
D31V4, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          25                           119
  CLUS_2                          70                            79
  CLUS_3                          55                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED        8     28     23
  DEL PEAK 10(5Q12.1) WILD-TYPE     36     45     41
D31V5, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           8                            36
  CLUS_2                          28                            45
  CLUS_3                          23                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       14      9     17     12      7
  DEL PEAK 10(5Q12.1) WILD-TYPE     26     24     28     19     25
D31V6, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          14                            26
  CLUS_2                           9                            24
  CLUS_3                          17                            28
  CLUS_4                          12                            19
  CLUS_5                           7                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       33     80     62
  DEL PEAK 10(5Q12.1) WILD-TYPE    133    115     89
D31V7, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          33                           133
  CLUS_2                          80                           115
  CLUS_3                          62                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED       13     40     50      7     25     24
  DEL PEAK 10(5Q12.1) WILD-TYPE     65     70     47     41     28     25
                               vv
clus                            CLUS_7
  DEL PEAK 10(5Q12.1) MUTATED       16
  DEL PEAK 10(5Q12.1) WILD-TYPE     61
D31V8, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          13                            65
  CLUS_2                          40                            70
  CLUS_3                          50                            47
  CLUS_4                           7                            41
  CLUS_5                          25                            28
  CLUS_6                          24                            25
  CLUS_7                          16                            61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       36    114     23
  DEL PEAK 10(5Q12.1) WILD-TYPE    153    114     70
D31V9, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          36                           153
  CLUS_2                         114                           114
  CLUS_3                          23                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       12     74     31     56
  DEL PEAK 10(5Q12.1) WILD-TYPE     59    124    110     44
D31V10, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          12                            59
  CLUS_2                          74                           124
  CLUS_3                          31                           110
  CLUS_4                          56                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       38     81     27
  DEL PEAK 10(5Q12.1) WILD-TYPE    107    117     64
D31V11, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          38                           107
  CLUS_2                          81                           117
  CLUS_3                          27                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       14    112     20
  DEL PEAK 10(5Q12.1) WILD-TYPE     89    136     63
D31V12, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          14                            89
  CLUS_2                         112                           136
  CLUS_3                          20                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 11(5Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q31.1) MUTATED        1      3      2      4
  DEL PEAK 11(5Q31.1) WILD-TYPE      4      6     10      2
D32V1, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           3                             6
  CLUS_3                           2                            10
  CLUS_4                           4                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED        2      4      4
  DEL PEAK 11(5Q31.1) WILD-TYPE     12      7      3
D32V2, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             7
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q31.1) MUTATED       34     49     46     79
  DEL PEAK 11(5Q31.1) WILD-TYPE     35    179     33     61
D32V3, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          34                            35
  CLUS_2                          49                           179
  CLUS_3                          46                            33
  CLUS_4                          79                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       31     81     72
  DEL PEAK 11(5Q31.1) WILD-TYPE    113     68     90
D32V4, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          31                           113
  CLUS_2                          81                            68
  CLUS_3                          72                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       10     32     25
  DEL PEAK 11(5Q31.1) WILD-TYPE     34     41     39
D32V5, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          10                            34
  CLUS_2                          32                            41
  CLUS_3                          25                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q31.1) MUTATED       14     12     21     13      7
  DEL PEAK 11(5Q31.1) WILD-TYPE     26     21     24     18     25
D32V6, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          14                            26
  CLUS_2                          12                            21
  CLUS_3                          21                            24
  CLUS_4                          13                            18
  CLUS_5                           7                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       36     97     73
  DEL PEAK 11(5Q31.1) WILD-TYPE    130     98     78
D32V7, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          36                           130
  CLUS_2                          97                            98
  CLUS_3                          73                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q31.1) MUTATED       13     51     54     11     30     27
  DEL PEAK 11(5Q31.1) WILD-TYPE     65     59     43     37     23     22
                               vv
clus                            CLUS_7
  DEL PEAK 11(5Q31.1) MUTATED       20
  DEL PEAK 11(5Q31.1) WILD-TYPE     57
D32V8, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          13                            65
  CLUS_2                          51                            59
  CLUS_3                          54                            43
  CLUS_4                          11                            37
  CLUS_5                          30                            23
  CLUS_6                          27                            22
  CLUS_7                          20                            57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       44    127     33
  DEL PEAK 11(5Q31.1) WILD-TYPE    145    101     60
D32V9, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          44                           145
  CLUS_2                         127                           101
  CLUS_3                          33                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q31.1) MUTATED       16     87     36     65
  DEL PEAK 11(5Q31.1) WILD-TYPE     55    111    105     35
D32V10, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          16                            55
  CLUS_2                          87                           111
  CLUS_3                          36                           105
  CLUS_4                          65                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       55     89     36
  DEL PEAK 11(5Q31.1) WILD-TYPE     90    109     55
D32V11, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          55                            90
  CLUS_2                          89                           109
  CLUS_3                          36                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       21    131     28
  DEL PEAK 11(5Q31.1) WILD-TYPE     82    117     55
D32V12, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          21                            82
  CLUS_2                         131                           117
  CLUS_3                          28                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 12(6Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q11.1) MUTATED        2      1      2      2
  DEL PEAK 12(6Q11.1) WILD-TYPE      3      8     10      4
D33V1, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           1                             8
  CLUS_3                           2                            10
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED        3      2      2
  DEL PEAK 12(6Q11.1) WILD-TYPE     11      9      5
D33V2, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           2                             9
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q11.1) MUTATED       25     50     26     33
  DEL PEAK 12(6Q11.1) WILD-TYPE     44    178     53    107
D33V3, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          25                            44
  CLUS_2                          50                           178
  CLUS_3                          26                            53
  CLUS_4                          33                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       32     30     59
  DEL PEAK 12(6Q11.1) WILD-TYPE    112    119    103
D33V4, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          32                           112
  CLUS_2                          30                           119
  CLUS_3                          59                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED        9     14     20
  DEL PEAK 12(6Q11.1) WILD-TYPE     35     59     44
D33V5, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                          14                            59
  CLUS_3                          20                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q11.1) MUTATED        8     10      9      7      9
  DEL PEAK 12(6Q11.1) WILD-TYPE     32     23     36     24     23
D33V6, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                           8                            32
  CLUS_2                          10                            23
  CLUS_3                           9                            36
  CLUS_4                           7                            24
  CLUS_5                           9                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       42     56     34
  DEL PEAK 12(6Q11.1) WILD-TYPE    124    139    117
D33V7, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          42                           124
  CLUS_2                          56                           139
  CLUS_3                          34                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q11.1) MUTATED       23     31     22     12     16     13
  DEL PEAK 12(6Q11.1) WILD-TYPE     55     79     75     36     37     36
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q11.1) MUTATED       15
  DEL PEAK 12(6Q11.1) WILD-TYPE     62
D33V8, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          23                            55
  CLUS_2                          31                            79
  CLUS_3                          22                            75
  CLUS_4                          12                            36
  CLUS_5                          16                            37
  CLUS_6                          13                            36
  CLUS_7                          15                            62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       40     62     31
  DEL PEAK 12(6Q11.1) WILD-TYPE    149    166     62
D33V9, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          40                           149
  CLUS_2                          62                           166
  CLUS_3                          31                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q11.1) MUTATED       16     63     32     22
  DEL PEAK 12(6Q11.1) WILD-TYPE     55    135    109     78
D33V10, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          16                            55
  CLUS_2                          63                           135
  CLUS_3                          32                           109
  CLUS_4                          22                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       38     52     28
  DEL PEAK 12(6Q11.1) WILD-TYPE    107    146     63
D33V11, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          38                           107
  CLUS_2                          52                           146
  CLUS_3                          28                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       20     72     26
  DEL PEAK 12(6Q11.1) WILD-TYPE     83    176     57
D33V12, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          20                            83
  CLUS_2                          72                           176
  CLUS_3                          26                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 13(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q22.31) MUTATED        3      3      5      5
  DEL PEAK 13(6Q22.31) WILD-TYPE      2      6      7      1
D34V1, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            3                              6
  CLUS_3                            5                              7
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED        6      4      6
  DEL PEAK 13(6Q22.31) WILD-TYPE      8      7      1
D34V2, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            4                              7
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q22.31) MUTATED       50     93     40     69
  DEL PEAK 13(6Q22.31) WILD-TYPE     19    135     39     71
D34V3, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           50                             19
  CLUS_2                           93                            135
  CLUS_3                           40                             39
  CLUS_4                           69                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       48     67    111
  DEL PEAK 13(6Q22.31) WILD-TYPE     96     82     51
D34V4, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           48                             96
  CLUS_2                           67                             82
  CLUS_3                          111                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       27     28     33
  DEL PEAK 13(6Q22.31) WILD-TYPE     17     45     31
D34V5, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           27                             17
  CLUS_2                           28                             45
  CLUS_3                           33                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q22.31) MUTATED       16     25     15     15     17
  DEL PEAK 13(6Q22.31) WILD-TYPE     24      8     30     16     15
D34V6, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           16                             24
  CLUS_2                           25                              8
  CLUS_3                           15                             30
  CLUS_4                           15                             16
  CLUS_5                           17                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       71     99     79
  DEL PEAK 13(6Q22.31) WILD-TYPE     95     96     72
D34V7, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           71                             95
  CLUS_2                           99                             96
  CLUS_3                           79                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q22.31) MUTATED       33     58     37     34     34     21
  DEL PEAK 13(6Q22.31) WILD-TYPE     45     52     60     14     19     28
                                vv
clus                             CLUS_7
  DEL PEAK 13(6Q22.31) MUTATED       32
  DEL PEAK 13(6Q22.31) WILD-TYPE     45
D34V8, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           33                             45
  CLUS_2                           58                             52
  CLUS_3                           37                             60
  CLUS_4                           34                             14
  CLUS_5                           34                             19
  CLUS_6                           21                             28
  CLUS_7                           32                             45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       89    114     47
  DEL PEAK 13(6Q22.31) WILD-TYPE    100    114     46
D34V9, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           89                            100
  CLUS_2                          114                            114
  CLUS_3                           47                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q22.31) MUTATED       35    118     58     39
  DEL PEAK 13(6Q22.31) WILD-TYPE     36     80     83     61
D34V10, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           35                             36
  CLUS_2                          118                             80
  CLUS_3                           58                             83
  CLUS_4                           39                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       65    101     46
  DEL PEAK 13(6Q22.31) WILD-TYPE     80     97     45
D34V11, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           65                             80
  CLUS_2                          101                             97
  CLUS_3                           46                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       44    125     43
  DEL PEAK 13(6Q22.31) WILD-TYPE     59    123     40
D34V12, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           44                             59
  CLUS_2                          125                            123
  CLUS_3                           43                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 14(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6Q26) MUTATED        3      5      5      5
  DEL PEAK 14(6Q26) WILD-TYPE      2      4      7      1
D35V1, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         5                           4
  CLUS_3                         5                           7
  CLUS_4                         5                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED        7      5      6
  DEL PEAK 14(6Q26) WILD-TYPE      7      6      1
D35V2, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         7                           7
  CLUS_2                         5                           6
  CLUS_3                         6                           1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6Q26) MUTATED       49     98     42     68
  DEL PEAK 14(6Q26) WILD-TYPE     20    130     37     72
D35V3, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        49                          20
  CLUS_2                        98                         130
  CLUS_3                        42                          37
  CLUS_4                        68                          72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       53     70    102
  DEL PEAK 14(6Q26) WILD-TYPE     91     79     60
D35V4, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        53                          91
  CLUS_2                        70                          79
  CLUS_3                       102                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       26     29     35
  DEL PEAK 14(6Q26) WILD-TYPE     18     44     29
D35V5, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        26                          18
  CLUS_2                        29                          44
  CLUS_3                        35                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED       19     22     15     17     17
  DEL PEAK 14(6Q26) WILD-TYPE     21     11     30     14     15
D35V6, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        19                          21
  CLUS_2                        22                          11
  CLUS_3                        15                          30
  CLUS_4                        17                          14
  CLUS_5                        17                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       73    103     78
  DEL PEAK 14(6Q26) WILD-TYPE     93     92     73
D35V7, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        73                          93
  CLUS_2                       103                          92
  CLUS_3                        78                          73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 14(6Q26) MUTATED       31     62     39     32     32     25     33
  DEL PEAK 14(6Q26) WILD-TYPE     47     48     58     16     21     24     44
D35V8, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        31                          47
  CLUS_2                        62                          48
  CLUS_3                        39                          58
  CLUS_4                        32                          16
  CLUS_5                        32                          21
  CLUS_6                        25                          24
  CLUS_7                        33                          44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       92    115     47
  DEL PEAK 14(6Q26) WILD-TYPE     97    113     46
D35V9, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        92                          97
  CLUS_2                       115                         113
  CLUS_3                        47                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6Q26) MUTATED       35    115     63     41
  DEL PEAK 14(6Q26) WILD-TYPE     36     83     78     59
D35V10, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        35                          36
  CLUS_2                       115                          83
  CLUS_3                        63                          78
  CLUS_4                        41                          59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       65    101     45
  DEL PEAK 14(6Q26) WILD-TYPE     80     97     46
D35V11, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        65                          80
  CLUS_2                       101                          97
  CLUS_3                        45                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       43    126     42
  DEL PEAK 14(6Q26) WILD-TYPE     60    122     41
D35V12, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        43                          60
  CLUS_2                       126                         122
  CLUS_3                        42                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 15(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED        5      7      5      6
  DEL PEAK 15(8P23.2) WILD-TYPE      0      2      7      0
D36V1, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                           7                             2
  CLUS_3                           5                             7
  CLUS_4                           6                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED        7      9      7
  DEL PEAK 15(8P23.2) WILD-TYPE      7      2      0
D36V2, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                           9                             2
  CLUS_3                           7                             0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED       32     78     47    100
  DEL PEAK 15(8P23.2) WILD-TYPE     37    150     32     40
D36V3, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          32                            37
  CLUS_2                          78                           150
  CLUS_3                          47                            32
  CLUS_4                         100                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       59     75     90
  DEL PEAK 15(8P23.2) WILD-TYPE     85     74     72
D36V4, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          59                            85
  CLUS_2                          75                            74
  CLUS_3                          90                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       13     42     34
  DEL PEAK 15(8P23.2) WILD-TYPE     31     31     30
D36V5, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          13                            31
  CLUS_2                          42                            31
  CLUS_3                          34                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       20      9     35     14     11
  DEL PEAK 15(8P23.2) WILD-TYPE     20     24     10     17     21
D36V6, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          20                            20
  CLUS_2                           9                            24
  CLUS_3                          35                            10
  CLUS_4                          14                            17
  CLUS_5                          11                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       63    135     57
  DEL PEAK 15(8P23.2) WILD-TYPE    103     60     94
D36V7, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          63                           103
  CLUS_2                         135                            60
  CLUS_3                          57                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       34     72     64     11     20     24
  DEL PEAK 15(8P23.2) WILD-TYPE     44     38     33     37     33     25
                               vv
clus                            CLUS_7
  DEL PEAK 15(8P23.2) MUTATED       30
  DEL PEAK 15(8P23.2) WILD-TYPE     47
D36V8, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          34                            44
  CLUS_2                          72                            38
  CLUS_3                          64                            33
  CLUS_4                          11                            37
  CLUS_5                          20                            33
  CLUS_6                          24                            25
  CLUS_7                          30                            47
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       72    127     54
  DEL PEAK 15(8P23.2) WILD-TYPE    117    101     39
D36V9, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          72                           117
  CLUS_2                         127                           101
  CLUS_3                          54                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED       27    108     60     58
  DEL PEAK 15(8P23.2) WILD-TYPE     44     90     81     42
D36V10, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          27                            44
  CLUS_2                         108                            90
  CLUS_3                          60                            81
  CLUS_4                          58                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       57    104     50
  DEL PEAK 15(8P23.2) WILD-TYPE     88     94     41
D36V11, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          57                            88
  CLUS_2                         104                            94
  CLUS_3                          50                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       34    136     41
  DEL PEAK 15(8P23.2) WILD-TYPE     69    112     42
D36V12, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          34                            69
  CLUS_2                         136                           112
  CLUS_3                          41                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 16(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED        1      1      2      2
  DEL PEAK 16(8P11.21) WILD-TYPE      4      8     10      4
D37V1, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            1                              8
  CLUS_3                            2                             10
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED        2      1      3
  DEL PEAK 16(8P11.21) WILD-TYPE     12     10      4
D37V2, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            1                             10
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED        5     34     24     60
  DEL PEAK 16(8P11.21) WILD-TYPE     64    194     55     80
D37V3, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            5                             64
  CLUS_2                           34                            194
  CLUS_3                           24                             55
  CLUS_4                           60                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       30     34     45
  DEL PEAK 16(8P11.21) WILD-TYPE    114    115    117
D37V4, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           30                            114
  CLUS_2                           34                            115
  CLUS_3                           45                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       11     19     14
  DEL PEAK 16(8P11.21) WILD-TYPE     33     54     50
D37V5, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           11                             33
  CLUS_2                           19                             54
  CLUS_3                           14                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       10      3     17      5      9
  DEL PEAK 16(8P11.21) WILD-TYPE     30     30     28     26     23
D37V6, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           10                             30
  CLUS_2                            3                             30
  CLUS_3                           17                             28
  CLUS_4                            5                             26
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       35     62     25
  DEL PEAK 16(8P11.21) WILD-TYPE    131    133    126
D37V7, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           35                            131
  CLUS_2                           62                            133
  CLUS_3                           25                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED       21     32     25      5     12     13
  DEL PEAK 16(8P11.21) WILD-TYPE     57     78     72     43     41     36
                                vv
clus                             CLUS_7
  DEL PEAK 16(8P11.21) MUTATED       14
  DEL PEAK 16(8P11.21) WILD-TYPE     63
D37V8, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           21                             57
  CLUS_2                           32                             78
  CLUS_3                           25                             72
  CLUS_4                            5                             43
  CLUS_5                           12                             41
  CLUS_6                           13                             36
  CLUS_7                           14                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       39     53     28
  DEL PEAK 16(8P11.21) WILD-TYPE    150    175     65
D37V9, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           39                            150
  CLUS_2                           53                            175
  CLUS_3                           28                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED       18     51     29     22
  DEL PEAK 16(8P11.21) WILD-TYPE     53    147    112     78
D37V10, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                           51                            147
  CLUS_3                           29                            112
  CLUS_4                           22                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       31     52     24
  DEL PEAK 16(8P11.21) WILD-TYPE    114    146     67
D37V11, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           31                            114
  CLUS_2                           52                            146
  CLUS_3                           24                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       18     65     24
  DEL PEAK 16(8P11.21) WILD-TYPE     85    183     59
D37V12, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           65                            183
  CLUS_3                           24                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 17(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED        1      4      8      5
  DEL PEAK 17(9P23) WILD-TYPE      4      5      4      1
D38V1, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         1                           4
  CLUS_2                         4                           5
  CLUS_3                         8                           4
  CLUS_4                         5                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        9      4      5
  DEL PEAK 17(9P23) WILD-TYPE      5      7      2
D38V2, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         4                           7
  CLUS_3                         5                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED       34    100     63     88
  DEL PEAK 17(9P23) WILD-TYPE     35    128     16     52
D38V3, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        34                          35
  CLUS_2                       100                         128
  CLUS_3                        63                          16
  CLUS_4                        88                          52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       69     93     86
  DEL PEAK 17(9P23) WILD-TYPE     75     56     76
D38V4, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        69                          75
  CLUS_2                        93                          56
  CLUS_3                        86                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       24     42     34
  DEL PEAK 17(9P23) WILD-TYPE     20     31     30
D38V5, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        24                          20
  CLUS_2                        42                          31
  CLUS_3                        34                          30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       23     19     27     19     12
  DEL PEAK 17(9P23) WILD-TYPE     17     14     18     12     20
D38V6, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        23                          17
  CLUS_2                        19                          14
  CLUS_3                        27                          18
  CLUS_4                        19                          12
  CLUS_5                        12                          20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       81    107     95
  DEL PEAK 17(9P23) WILD-TYPE     85     88     56
D38V7, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        81                          85
  CLUS_2                       107                          88
  CLUS_3                        95                          56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(9P23) MUTATED       42     51     63     24     27     40     36
  DEL PEAK 17(9P23) WILD-TYPE     36     59     34     24     26      9     41
D38V8, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        42                          36
  CLUS_2                        51                          59
  CLUS_3                        63                          34
  CLUS_4                        24                          24
  CLUS_5                        27                          26
  CLUS_6                        40                           9
  CLUS_7                        36                          41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       98    123     59
  DEL PEAK 17(9P23) WILD-TYPE     91    105     34
D38V9, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        98                          91
  CLUS_2                       123                         105
  CLUS_3                        59                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED       35    106     71     68
  DEL PEAK 17(9P23) WILD-TYPE     36     92     70     32
D38V10, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        35                          36
  CLUS_2                       106                          92
  CLUS_3                        71                          70
  CLUS_4                        68                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       86    101     52
  DEL PEAK 17(9P23) WILD-TYPE     59     97     39
D38V11, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        86                          59
  CLUS_2                       101                          97
  CLUS_3                        52                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       49    143     47
  DEL PEAK 17(9P23) WILD-TYPE     54    105     36
D38V12, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        49                          54
  CLUS_2                       143                         105
  CLUS_3                        47                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 18(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED        1      4      8      5
  DEL PEAK 18(9P21.3) WILD-TYPE      4      5      4      1
D39V1, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           4                             5
  CLUS_3                           8                             4
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        9      4      5
  DEL PEAK 18(9P21.3) WILD-TYPE      5      7      2
D39V2, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           4                             7
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED       32    104     65     90
  DEL PEAK 18(9P21.3) WILD-TYPE     37    124     14     50
D39V3, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          32                            37
  CLUS_2                         104                           124
  CLUS_3                          65                            14
  CLUS_4                          90                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       67     94     89
  DEL PEAK 18(9P21.3) WILD-TYPE     77     55     73
D39V4, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          67                            77
  CLUS_2                          94                            55
  CLUS_3                          89                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       23     45     37
  DEL PEAK 18(9P21.3) WILD-TYPE     21     28     27
D39V5, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          23                            21
  CLUS_2                          45                            28
  CLUS_3                          37                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       24     19     29     22     11
  DEL PEAK 18(9P21.3) WILD-TYPE     16     14     16      9     21
D39V6, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          24                            16
  CLUS_2                          19                            14
  CLUS_3                          29                            16
  CLUS_4                          22                             9
  CLUS_5                          11                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       83    114     92
  DEL PEAK 18(9P21.3) WILD-TYPE     83     81     59
D39V7, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          83                            83
  CLUS_2                         114                            81
  CLUS_3                          92                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED       45     54     63     23     25     43
  DEL PEAK 18(9P21.3) WILD-TYPE     33     56     34     25     28      6
                               vv
clus                            CLUS_7
  DEL PEAK 18(9P21.3) MUTATED       36
  DEL PEAK 18(9P21.3) WILD-TYPE     41
D39V8, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          45                            33
  CLUS_2                          54                            56
  CLUS_3                          63                            34
  CLUS_4                          23                            25
  CLUS_5                          25                            28
  CLUS_6                          43                             6
  CLUS_7                          36                            41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED      101    126     60
  DEL PEAK 18(9P21.3) WILD-TYPE     88    102     33
D39V9, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         101                            88
  CLUS_2                         126                           102
  CLUS_3                          60                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED       35    104     75     73
  DEL PEAK 18(9P21.3) WILD-TYPE     36     94     66     27
D39V10, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          35                            36
  CLUS_2                         104                            94
  CLUS_3                          75                            66
  CLUS_4                          73                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       91     98     53
  DEL PEAK 18(9P21.3) WILD-TYPE     54    100     38
D39V11, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          91                            54
  CLUS_2                          98                           100
  CLUS_3                          53                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       48    145     49
  DEL PEAK 18(9P21.3) WILD-TYPE     55    103     34
D39V12, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          48                            55
  CLUS_2                         145                           103
  CLUS_3                          49                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 19(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q21.11) MUTATED        0      5      6      5
  DEL PEAK 19(9Q21.11) WILD-TYPE      5      4      6      1
D40V1, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            5                              4
  CLUS_3                            6                              6
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED        6      5      5
  DEL PEAK 19(9Q21.11) WILD-TYPE      8      6      2
D40V2, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            5                              6
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q21.11) MUTATED       39     81     58     78
  DEL PEAK 19(9Q21.11) WILD-TYPE     30    147     21     62
D40V3, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           39                             30
  CLUS_2                           81                            147
  CLUS_3                           58                             21
  CLUS_4                           78                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       57     94     70
  DEL PEAK 19(9Q21.11) WILD-TYPE     87     55     92
D40V4, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           57                             87
  CLUS_2                           94                             55
  CLUS_3                           70                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       17     38     34
  DEL PEAK 19(9Q21.11) WILD-TYPE     27     35     30
D40V5, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           17                             27
  CLUS_2                           38                             35
  CLUS_3                           34                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       23     16     27     14      9
  DEL PEAK 19(9Q21.11) WILD-TYPE     17     17     18     17     23
D40V6, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           23                             17
  CLUS_2                           16                             17
  CLUS_3                           27                             18
  CLUS_4                           14                             17
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       67     99     88
  DEL PEAK 19(9Q21.11) WILD-TYPE     99     96     63
D40V7, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           67                             99
  CLUS_2                           99                             96
  CLUS_3                           88                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED       35     47     59     16     38     31
  DEL PEAK 19(9Q21.11) WILD-TYPE     43     63     38     32     15     18
                                vv
clus                             CLUS_7
  DEL PEAK 19(9Q21.11) MUTATED       28
  DEL PEAK 19(9Q21.11) WILD-TYPE     49
D40V8, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           35                             43
  CLUS_2                           47                             63
  CLUS_3                           59                             38
  CLUS_4                           16                             32
  CLUS_5                           38                             15
  CLUS_6                           31                             18
  CLUS_7                           28                             49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       70    125     57
  DEL PEAK 19(9Q21.11) WILD-TYPE    119    103     36
D40V9, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           70                            119
  CLUS_2                          125                            103
  CLUS_3                           57                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q21.11) MUTATED       26    101     54     71
  DEL PEAK 19(9Q21.11) WILD-TYPE     45     97     87     29
D40V10, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           26                             45
  CLUS_2                          101                             97
  CLUS_3                           54                             87
  CLUS_4                           71                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       65     98     52
  DEL PEAK 19(9Q21.11) WILD-TYPE     80    100     39
D40V11, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           65                             80
  CLUS_2                           98                            100
  CLUS_3                           52                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       34    141     40
  DEL PEAK 19(9Q21.11) WILD-TYPE     69    107     43
D40V12, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           34                             69
  CLUS_2                          141                            107
  CLUS_3                           40                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 20(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED        1      2      3      1
  DEL PEAK 20(10P15.3) WILD-TYPE      4      7      9      5
D41V1, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            3                              9
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED        3      3      1
  DEL PEAK 20(10P15.3) WILD-TYPE     11      8      6
D41V2, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            3                              8
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED       15     41     25     45
  DEL PEAK 20(10P15.3) WILD-TYPE     54    187     54     95
D41V3, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           15                             54
  CLUS_2                           41                            187
  CLUS_3                           25                             54
  CLUS_4                           45                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       23     46     41
  DEL PEAK 20(10P15.3) WILD-TYPE    121    103    121
D41V4, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           23                            121
  CLUS_2                           46                            103
  CLUS_3                           41                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED        8     24     13
  DEL PEAK 20(10P15.3) WILD-TYPE     36     49     51
D41V5, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           24                             49
  CLUS_3                           13                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10P15.3) MUTATED       16      5     12      6      6
  DEL PEAK 20(10P15.3) WILD-TYPE     24     28     33     25     26
D41V6, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           16                             24
  CLUS_2                            5                             28
  CLUS_3                           12                             33
  CLUS_4                            6                             25
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       34     57     34
  DEL PEAK 20(10P15.3) WILD-TYPE    132    138    117
D41V7, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           34                            132
  CLUS_2                           57                            138
  CLUS_3                           34                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10P15.3) MUTATED       16     26     39      6     16      8
  DEL PEAK 20(10P15.3) WILD-TYPE     62     84     58     42     37     41
                                vv
clus                             CLUS_7
  DEL PEAK 20(10P15.3) MUTATED       14
  DEL PEAK 20(10P15.3) WILD-TYPE     63
D41V8, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           16                             62
  CLUS_2                           26                             84
  CLUS_3                           39                             58
  CLUS_4                            6                             42
  CLUS_5                           16                             37
  CLUS_6                            8                             41
  CLUS_7                           14                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       33     58     34
  DEL PEAK 20(10P15.3) WILD-TYPE    156    170     59
D41V9, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           33                            156
  CLUS_2                           58                            170
  CLUS_3                           34                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED        9     51     32     33
  DEL PEAK 20(10P15.3) WILD-TYPE     62    147    109     67
D41V10, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            9                             62
  CLUS_2                           51                            147
  CLUS_3                           32                            109
  CLUS_4                           33                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       26     54     29
  DEL PEAK 20(10P15.3) WILD-TYPE    119    144     62
D41V11, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           26                            119
  CLUS_2                           54                            144
  CLUS_3                           29                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       15     69     25
  DEL PEAK 20(10P15.3) WILD-TYPE     88    179     58
D41V12, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           15                             88
  CLUS_2                           69                            179
  CLUS_3                           25                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 21(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q26.3) MUTATED        3      6      5      1
  DEL PEAK 21(10Q26.3) WILD-TYPE      2      3      7      5
D42V1, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            6                              3
  CLUS_3                            5                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED        7      7      1
  DEL PEAK 21(10Q26.3) WILD-TYPE      7      4      6
D42V2, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                            7                              4
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q26.3) MUTATED       18     53     23     62
  DEL PEAK 21(10Q26.3) WILD-TYPE     51    175     56     78
D42V3, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           18                             51
  CLUS_2                           53                            175
  CLUS_3                           23                             56
  CLUS_4                           62                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       32     53     50
  DEL PEAK 21(10Q26.3) WILD-TYPE    112     96    112
D42V4, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           32                            112
  CLUS_2                           53                             96
  CLUS_3                           50                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED        5     36     20
  DEL PEAK 21(10Q26.3) WILD-TYPE     39     37     44
D42V5, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                           36                             37
  CLUS_3                           20                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       21      4     21     10      5
  DEL PEAK 21(10Q26.3) WILD-TYPE     19     29     24     21     27
D42V6, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           21                             19
  CLUS_2                            4                             29
  CLUS_3                           21                             24
  CLUS_4                           10                             21
  CLUS_5                            5                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       42     76     36
  DEL PEAK 21(10Q26.3) WILD-TYPE    124    119    115
D42V7, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           42                            124
  CLUS_2                           76                            119
  CLUS_3                           36                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       23     44     48      1     11      9
  DEL PEAK 21(10Q26.3) WILD-TYPE     55     66     49     47     42     40
                                vv
clus                             CLUS_7
  DEL PEAK 21(10Q26.3) MUTATED       18
  DEL PEAK 21(10Q26.3) WILD-TYPE     59
D42V8, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           23                             55
  CLUS_2                           44                             66
  CLUS_3                           48                             49
  CLUS_4                            1                             47
  CLUS_5                           11                             42
  CLUS_6                            9                             40
  CLUS_7                           18                             59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       43     74     36
  DEL PEAK 21(10Q26.3) WILD-TYPE    146    154     57
D42V9, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           43                            146
  CLUS_2                           74                            154
  CLUS_3                           36                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q26.3) MUTATED       12     62     36     43
  DEL PEAK 21(10Q26.3) WILD-TYPE     59    136    105     57
D42V10, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           12                             59
  CLUS_2                           62                            136
  CLUS_3                           36                            105
  CLUS_4                           43                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       34     69     24
  DEL PEAK 21(10Q26.3) WILD-TYPE    111    129     67
D42V11, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           34                            111
  CLUS_2                           69                            129
  CLUS_3                           24                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       16     85     26
  DEL PEAK 21(10Q26.3) WILD-TYPE     87    163     57
D42V12, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           16                             87
  CLUS_2                           85                            163
  CLUS_3                           26                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 22(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P15.5) MUTATED        1      2      1      3
  DEL PEAK 22(11P15.5) WILD-TYPE      4      7     11      3
D43V1, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            1                             11
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED        1      2      4
  DEL PEAK 22(11P15.5) WILD-TYPE     13      9      3
D43V2, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            2                              9
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P15.5) MUTATED       20     31     30     62
  DEL PEAK 22(11P15.5) WILD-TYPE     49    197     49     78
D43V3, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           20                             49
  CLUS_2                           31                            197
  CLUS_3                           30                             49
  CLUS_4                           62                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       27     57     42
  DEL PEAK 22(11P15.5) WILD-TYPE    117     92    120
D43V4, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           27                            117
  CLUS_2                           57                             92
  CLUS_3                           42                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED        8     17     17
  DEL PEAK 22(11P15.5) WILD-TYPE     36     56     47
D43V5, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           17                             56
  CLUS_3                           17                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED        9      7     15      7      4
  DEL PEAK 22(11P15.5) WILD-TYPE     31     26     30     24     28
D43V6, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                            7                             26
  CLUS_3                           15                             30
  CLUS_4                            7                             24
  CLUS_5                            4                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       26     72     42
  DEL PEAK 22(11P15.5) WILD-TYPE    140    123    109
D43V7, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           26                            140
  CLUS_2                           72                            123
  CLUS_3                           42                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED        8     36     38      8     14     23
  DEL PEAK 22(11P15.5) WILD-TYPE     70     74     59     40     39     26
                                vv
clus                             CLUS_7
  DEL PEAK 22(11P15.5) MUTATED       13
  DEL PEAK 22(11P15.5) WILD-TYPE     64
D43V8, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            8                             70
  CLUS_2                           36                             74
  CLUS_3                           38                             59
  CLUS_4                            8                             40
  CLUS_5                           14                             39
  CLUS_6                           23                             26
  CLUS_7                           13                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       35     82     23
  DEL PEAK 22(11P15.5) WILD-TYPE    154    146     70
D43V9, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           35                            154
  CLUS_2                           82                            146
  CLUS_3                           23                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P15.5) MUTATED       14     63     24     39
  DEL PEAK 22(11P15.5) WILD-TYPE     57    135    117     61
D43V10, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                           63                            135
  CLUS_3                           24                            117
  CLUS_4                           39                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       34     66     21
  DEL PEAK 22(11P15.5) WILD-TYPE    111    132     70
D43V11, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           34                            111
  CLUS_2                           66                            132
  CLUS_3                           21                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       17     87     17
  DEL PEAK 22(11P15.5) WILD-TYPE     86    161     66
D43V12, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           17                             86
  CLUS_2                           87                            161
  CLUS_3                           17                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 23(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q23.2) MUTATED        2      1      1      1
  DEL PEAK 23(11Q23.2) WILD-TYPE      3      8     11      5
D44V1, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            1                              8
  CLUS_3                            1                             11
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED        2      1      2
  DEL PEAK 23(11Q23.2) WILD-TYPE     12     10      5
D44V2, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            1                             10
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q23.2) MUTATED       31     34     30     24
  DEL PEAK 23(11Q23.2) WILD-TYPE     38    194     49    116
D44V3, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           31                             38
  CLUS_2                           34                            194
  CLUS_3                           30                             49
  CLUS_4                           24                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       21     51     32
  DEL PEAK 23(11Q23.2) WILD-TYPE    123     98    130
D44V4, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           21                            123
  CLUS_2                           51                             98
  CLUS_3                           32                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED        8     11     21
  DEL PEAK 23(11Q23.2) WILD-TYPE     36     62     43
D44V5, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           11                             62
  CLUS_3                           21                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.2) MUTATED        5     11     10      7      7
  DEL PEAK 23(11Q23.2) WILD-TYPE     35     22     35     24     25
D44V6, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            5                             35
  CLUS_2                           11                             22
  CLUS_3                           10                             35
  CLUS_4                            7                             24
  CLUS_5                            7                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       20     44     53
  DEL PEAK 23(11Q23.2) WILD-TYPE    146    151     98
D44V7, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           20                            146
  CLUS_2                           44                            151
  CLUS_3                           53                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.2) MUTATED       10     26     22     15     20     16
  DEL PEAK 23(11Q23.2) WILD-TYPE     68     84     75     33     33     33
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q23.2) MUTATED        8
  DEL PEAK 23(11Q23.2) WILD-TYPE     69
D44V8, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           10                             68
  CLUS_2                           26                             84
  CLUS_3                           22                             75
  CLUS_4                           15                             33
  CLUS_5                           20                             33
  CLUS_6                           16                             33
  CLUS_7                            8                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       35     69     14
  DEL PEAK 23(11Q23.2) WILD-TYPE    154    159     79
D44V9, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           35                            154
  CLUS_2                           69                            159
  CLUS_3                           14                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q23.2) MUTATED       14     58     24     22
  DEL PEAK 23(11Q23.2) WILD-TYPE     57    140    117     78
D44V10, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                           58                            140
  CLUS_3                           24                            117
  CLUS_4                           22                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       29     55     14
  DEL PEAK 23(11Q23.2) WILD-TYPE    116    143     77
D44V11, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           29                            116
  CLUS_2                           55                            143
  CLUS_3                           14                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       18     62     18
  DEL PEAK 23(11Q23.2) WILD-TYPE     85    186     65
D44V12, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           62                            186
  CLUS_3                           18                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 24(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q25) MUTATED        2      2      0      1
  DEL PEAK 24(11Q25) WILD-TYPE      3      7     12      5
D45V1, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          2                            3
  CLUS_2                          2                            7
  CLUS_3                          0                           12
  CLUS_4                          1                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED        1      2      2
  DEL PEAK 24(11Q25) WILD-TYPE     13      9      5
D45V2, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                            9
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q25) MUTATED       27     34     26     30
  DEL PEAK 24(11Q25) WILD-TYPE     42    194     53    110
D45V3, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         27                           42
  CLUS_2                         34                          194
  CLUS_3                         26                           53
  CLUS_4                         30                          110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       19     50     36
  DEL PEAK 24(11Q25) WILD-TYPE    125     99    126
D45V4, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         19                          125
  CLUS_2                         50                           99
  CLUS_3                         36                          126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED        9      8     22
  DEL PEAK 24(11Q25) WILD-TYPE     35     65     42
D45V5, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          9                           35
  CLUS_2                          8                           65
  CLUS_3                         22                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q25) MUTATED        4      9      8     10      8
  DEL PEAK 24(11Q25) WILD-TYPE     36     24     37     21     24
D45V6, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          4                           36
  CLUS_2                          9                           24
  CLUS_3                          8                           37
  CLUS_4                         10                           21
  CLUS_5                          8                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       19     47     49
  DEL PEAK 24(11Q25) WILD-TYPE    147    148    102
D45V7, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         19                          147
  CLUS_2                         47                          148
  CLUS_3                         49                          102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(11Q25) MUTATED       11     25     22     14     19     16      8
  DEL PEAK 24(11Q25) WILD-TYPE     67     85     75     34     34     33     69
D45V8, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         11                           67
  CLUS_2                         25                           85
  CLUS_3                         22                           75
  CLUS_4                         14                           34
  CLUS_5                         19                           34
  CLUS_6                         16                           33
  CLUS_7                          8                           69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       36     63     17
  DEL PEAK 24(11Q25) WILD-TYPE    153    165     76
D45V9, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         36                          153
  CLUS_2                         63                          165
  CLUS_3                         17                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q25) MUTATED       14     56     26     20
  DEL PEAK 24(11Q25) WILD-TYPE     57    142    115     80
D45V10, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         14                           57
  CLUS_2                         56                          142
  CLUS_3                         26                          115
  CLUS_4                         20                           80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       33     53     14
  DEL PEAK 24(11Q25) WILD-TYPE    112    145     77
D45V11, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         33                          112
  CLUS_2                         53                          145
  CLUS_3                         14                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       19     62     19
  DEL PEAK 24(11Q25) WILD-TYPE     84    186     64
D45V12, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         19                           84
  CLUS_2                         62                          186
  CLUS_3                         19                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 25(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12P13.2) MUTATED        0      4      5      2
  DEL PEAK 25(12P13.2) WILD-TYPE      5      5      7      4
D46V1, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            4                              5
  CLUS_3                            5                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED        5      4      2
  DEL PEAK 25(12P13.2) WILD-TYPE      9      7      5
D46V2, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            4                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12P13.2) MUTATED       18     50      9     61
  DEL PEAK 25(12P13.2) WILD-TYPE     51    178     70     79
D46V3, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           18                             51
  CLUS_2                           50                            178
  CLUS_3                            9                             70
  CLUS_4                           61                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       26     41     53
  DEL PEAK 25(12P13.2) WILD-TYPE    118    108    109
D46V4, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           26                            118
  CLUS_2                           41                            108
  CLUS_3                           53                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       14     23     13
  DEL PEAK 25(12P13.2) WILD-TYPE     30     50     51
D46V5, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           23                             50
  CLUS_3                           13                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12P13.2) MUTATED       16      7     14      4      9
  DEL PEAK 25(12P13.2) WILD-TYPE     24     26     31     27     23
D46V6, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           16                             24
  CLUS_2                            7                             26
  CLUS_3                           14                             31
  CLUS_4                            4                             27
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       54     60     22
  DEL PEAK 25(12P13.2) WILD-TYPE    112    135    129
D46V7, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           54                            112
  CLUS_2                           60                            135
  CLUS_3                           22                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12P13.2) MUTATED       23     35     34     11      8      5
  DEL PEAK 25(12P13.2) WILD-TYPE     55     75     63     37     45     44
                                vv
clus                             CLUS_7
  DEL PEAK 25(12P13.2) MUTATED       20
  DEL PEAK 25(12P13.2) WILD-TYPE     57
D46V8, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           23                             55
  CLUS_2                           35                             75
  CLUS_3                           34                             63
  CLUS_4                           11                             37
  CLUS_5                            8                             45
  CLUS_6                            5                             44
  CLUS_7                           20                             57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       48     60     26
  DEL PEAK 25(12P13.2) WILD-TYPE    141    168     67
D46V9, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           48                            141
  CLUS_2                           60                            168
  CLUS_3                           26                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12P13.2) MUTATED       18     51     37     28
  DEL PEAK 25(12P13.2) WILD-TYPE     53    147    104     72
D46V10, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                           51                            147
  CLUS_3                           37                            104
  CLUS_4                           28                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       37     57     20
  DEL PEAK 25(12P13.2) WILD-TYPE    108    141     71
D46V11, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           37                            108
  CLUS_2                           57                            141
  CLUS_3                           20                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       20     67     27
  DEL PEAK 25(12P13.2) WILD-TYPE     83    181     56
D46V12, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           20                             83
  CLUS_2                           67                            181
  CLUS_3                           27                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 26(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q12) MUTATED        0      2      4      1
  DEL PEAK 26(12Q12) WILD-TYPE      5      7      8      5
D47V1, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          0                            5
  CLUS_2                          2                            7
  CLUS_3                          4                            8
  CLUS_4                          1                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED        4      2      1
  DEL PEAK 26(12Q12) WILD-TYPE     10      9      6
D47V2, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          2                            9
  CLUS_3                          1                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q12) MUTATED        8     37      5     48
  DEL PEAK 26(12Q12) WILD-TYPE     61    191     74     92
D47V3, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          8                           61
  CLUS_2                         37                          191
  CLUS_3                          5                           74
  CLUS_4                         48                           92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       25     21     42
  DEL PEAK 26(12Q12) WILD-TYPE    119    128    120
D47V4, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         25                          119
  CLUS_2                         21                          128
  CLUS_3                         42                          120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       10     22     10
  DEL PEAK 26(12Q12) WILD-TYPE     34     51     54
D47V5, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         10                           34
  CLUS_2                         22                           51
  CLUS_3                         10                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q12) MUTATED        9      6     17      3      7
  DEL PEAK 26(12Q12) WILD-TYPE     31     27     28     28     25
D47V6, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          9                           31
  CLUS_2                          6                           27
  CLUS_3                         17                           28
  CLUS_4                          3                           28
  CLUS_5                          7                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       42     43     12
  DEL PEAK 26(12Q12) WILD-TYPE    124    152    139
D47V7, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         42                          124
  CLUS_2                         43                          152
  CLUS_3                         12                          139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 26(12Q12) MUTATED       16     26     20     10      2      7     16
  DEL PEAK 26(12Q12) WILD-TYPE     62     84     77     38     51     42     61
D47V8, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         16                           62
  CLUS_2                         26                           84
  CLUS_3                         20                           77
  CLUS_4                         10                           38
  CLUS_5                          2                           51
  CLUS_6                          7                           42
  CLUS_7                         16                           61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       40     33     23
  DEL PEAK 26(12Q12) WILD-TYPE    149    195     70
D47V9, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         40                          149
  CLUS_2                         33                          195
  CLUS_3                         23                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q12) MUTATED       16     35     32     13
  DEL PEAK 26(12Q12) WILD-TYPE     55    163    109     87
D47V10, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         16                           55
  CLUS_2                         35                          163
  CLUS_3                         32                          109
  CLUS_4                         13                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       28     37     19
  DEL PEAK 26(12Q12) WILD-TYPE    117    161     72
D47V11, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         28                          117
  CLUS_2                         37                          161
  CLUS_3                         19                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       16     43     25
  DEL PEAK 26(12Q12) WILD-TYPE     87    205     58
D47V12, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         16                           87
  CLUS_2                         43                          205
  CLUS_3                         25                           58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 27(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q24.33) MUTATED        0      3      6      1
  DEL PEAK 27(12Q24.33) WILD-TYPE      5      6      6      5
D48V1, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                             0                               5
  CLUS_2                             3                               6
  CLUS_3                             6                               6
  CLUS_4                             1                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED        7      2      1
  DEL PEAK 27(12Q24.33) WILD-TYPE      7      9      6
D48V2, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                             7                               7
  CLUS_2                             2                               9
  CLUS_3                             1                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q24.33) MUTATED       10     60     12     55
  DEL PEAK 27(12Q24.33) WILD-TYPE     59    168     67     85
D48V3, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            10                              59
  CLUS_2                            60                             168
  CLUS_3                            12                              67
  CLUS_4                            55                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       40     33     50
  DEL PEAK 27(12Q24.33) WILD-TYPE    104    116    112
D48V4, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            40                             104
  CLUS_2                            33                             116
  CLUS_3                            50                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       17     28     12
  DEL PEAK 27(12Q24.33) WILD-TYPE     27     45     52
D48V5, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            17                              27
  CLUS_2                            28                              45
  CLUS_3                            12                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q24.33) MUTATED       15      7     15      7     13
  DEL PEAK 27(12Q24.33) WILD-TYPE     25     26     30     24     19
D48V6, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            15                              25
  CLUS_2                             7                              26
  CLUS_3                            15                              30
  CLUS_4                             7                              24
  CLUS_5                            13                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       55     60     21
  DEL PEAK 27(12Q24.33) WILD-TYPE    111    135    130
D48V7, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            55                             111
  CLUS_2                            60                             135
  CLUS_3                            21                             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q24.33) MUTATED       22     34     31     16      2      6
  DEL PEAK 27(12Q24.33) WILD-TYPE     56     76     66     32     51     43
                                 vv
clus                              CLUS_7
  DEL PEAK 27(12Q24.33) MUTATED       25
  DEL PEAK 27(12Q24.33) WILD-TYPE     52
D48V8, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            22                              56
  CLUS_2                            34                              76
  CLUS_3                            31                              66
  CLUS_4                            16                              32
  CLUS_5                             2                              51
  CLUS_6                             6                              43
  CLUS_7                            25                              52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       54     52     29
  DEL PEAK 27(12Q24.33) WILD-TYPE    135    176     64
D48V9, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            54                             135
  CLUS_2                            52                             176
  CLUS_3                            29                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q24.33) MUTATED       20     50     49     16
  DEL PEAK 27(12Q24.33) WILD-TYPE     51    148     92     84
D48V10, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            20                              51
  CLUS_2                            50                             148
  CLUS_3                            49                              92
  CLUS_4                            16                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       41     56     20
  DEL PEAK 27(12Q24.33) WILD-TYPE    104    142     71
D48V11, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            41                             104
  CLUS_2                            56                             142
  CLUS_3                            20                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       29     62     26
  DEL PEAK 27(12Q24.33) WILD-TYPE     74    186     57
D48V12, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            29                              74
  CLUS_2                            62                             186
  CLUS_3                            26                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 28(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q12.11) MUTATED        5      6      1      4
  DEL PEAK 28(13Q12.11) WILD-TYPE      0      3     11      2
D49V1, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                             5                               0
  CLUS_2                             6                               3
  CLUS_3                             1                              11
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED        3      8      5
  DEL PEAK 28(13Q12.11) WILD-TYPE     11      3      2
D49V2, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             8                               3
  CLUS_3                             5                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q12.11) MUTATED       49     86     48    111
  DEL PEAK 28(13Q12.11) WILD-TYPE     20    142     31     29
D49V3, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            49                              20
  CLUS_2                            86                             142
  CLUS_3                            48                              31
  CLUS_4                           111                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       65     94    103
  DEL PEAK 28(13Q12.11) WILD-TYPE     79     55     59
D49V4, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            65                              79
  CLUS_2                            94                              55
  CLUS_3                           103                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       18     49     29
  DEL PEAK 28(13Q12.11) WILD-TYPE     26     24     35
D49V5, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            18                              26
  CLUS_2                            49                              24
  CLUS_3                            29                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q12.11) MUTATED       27     11     33     13     12
  DEL PEAK 28(13Q12.11) WILD-TYPE     13     22     12     18     20
D49V6, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            27                              13
  CLUS_2                            11                              22
  CLUS_3                            33                              12
  CLUS_4                            13                              18
  CLUS_5                            12                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       73    133     85
  DEL PEAK 28(13Q12.11) WILD-TYPE     93     62     66
D49V7, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            73                              93
  CLUS_2                           133                              62
  CLUS_3                            85                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(13Q12.11) MUTATED       38     80     67     15     39     22
  DEL PEAK 28(13Q12.11) WILD-TYPE     40     30     30     33     14     27
                                 vv
clus                              CLUS_7
  DEL PEAK 28(13Q12.11) MUTATED       30
  DEL PEAK 28(13Q12.11) WILD-TYPE     47
D49V8, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            38                              40
  CLUS_2                            80                              30
  CLUS_3                            67                              30
  CLUS_4                            15                              33
  CLUS_5                            39                              14
  CLUS_6                            22                              27
  CLUS_7                            30                              47
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       90    143     59
  DEL PEAK 28(13Q12.11) WILD-TYPE     99     85     34
D49V9, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            90                              99
  CLUS_2                           143                              85
  CLUS_3                            59                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q12.11) MUTATED       37    124     65     66
  DEL PEAK 28(13Q12.11) WILD-TYPE     34     74     76     34
D49V10, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            37                              34
  CLUS_2                           124                              74
  CLUS_3                            65                              76
  CLUS_4                            66                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       77    123     52
  DEL PEAK 28(13Q12.11) WILD-TYPE     68     75     39
D49V11, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            77                              68
  CLUS_2                           123                              75
  CLUS_3                            52                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       44    160     48
  DEL PEAK 28(13Q12.11) WILD-TYPE     59     88     35
D49V12, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            44                              59
  CLUS_2                           160                              88
  CLUS_3                            48                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 29(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q12.13) MUTATED        4      5      1      4
  DEL PEAK 29(13Q12.13) WILD-TYPE      1      4     11      2
D50V1, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                             4                               1
  CLUS_2                             5                               4
  CLUS_3                             1                              11
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED        3      6      5
  DEL PEAK 29(13Q12.13) WILD-TYPE     11      5      2
D50V2, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             6                               5
  CLUS_3                             5                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q12.13) MUTATED       51     85     46    111
  DEL PEAK 29(13Q12.13) WILD-TYPE     18    143     33     29
D50V3, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            51                              18
  CLUS_2                            85                             143
  CLUS_3                            46                              33
  CLUS_4                           111                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       65     93    103
  DEL PEAK 29(13Q12.13) WILD-TYPE     79     56     59
D50V4, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            65                              79
  CLUS_2                            93                              56
  CLUS_3                           103                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       18     49     30
  DEL PEAK 29(13Q12.13) WILD-TYPE     26     24     34
D50V5, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            18                              26
  CLUS_2                            49                              24
  CLUS_3                            30                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q12.13) MUTATED       27     12     33     13     12
  DEL PEAK 29(13Q12.13) WILD-TYPE     13     21     12     18     20
D50V6, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            27                              13
  CLUS_2                            12                              21
  CLUS_3                            33                              12
  CLUS_4                            13                              18
  CLUS_5                            12                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       74    131     85
  DEL PEAK 29(13Q12.13) WILD-TYPE     92     64     66
D50V7, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            74                              92
  CLUS_2                           131                              64
  CLUS_3                            85                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q12.13) MUTATED       40     79     63     15     41     23
  DEL PEAK 29(13Q12.13) WILD-TYPE     38     31     34     33     12     26
                                 vv
clus                              CLUS_7
  DEL PEAK 29(13Q12.13) MUTATED       29
  DEL PEAK 29(13Q12.13) WILD-TYPE     48
D50V8, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            40                              38
  CLUS_2                            79                              31
  CLUS_3                            63                              34
  CLUS_4                            15                              33
  CLUS_5                            41                              12
  CLUS_6                            23                              26
  CLUS_7                            29                              48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       90    142     59
  DEL PEAK 29(13Q12.13) WILD-TYPE     99     86     34
D50V9, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            90                              99
  CLUS_2                           142                              86
  CLUS_3                            59                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q12.13) MUTATED       36    123     66     66
  DEL PEAK 29(13Q12.13) WILD-TYPE     35     75     75     34
D50V10, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            36                              35
  CLUS_2                           123                              75
  CLUS_3                            66                              75
  CLUS_4                            66                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       77    124     53
  DEL PEAK 29(13Q12.13) WILD-TYPE     68     74     38
D50V11, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            77                              68
  CLUS_2                           124                              74
  CLUS_3                            53                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       44    161     49
  DEL PEAK 29(13Q12.13) WILD-TYPE     59     87     34
D50V12, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            44                              59
  CLUS_2                           161                              87
  CLUS_3                            49                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 30(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED        4      4      1      4
  DEL PEAK 30(13Q14.2) WILD-TYPE      1      5     11      2
D51V1, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            4                              5
  CLUS_3                            1                             11
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED        2      6      5
  DEL PEAK 30(13Q14.2) WILD-TYPE     12      5      2
D51V2, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                              5
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       51     77     43    111
  DEL PEAK 30(13Q14.2) WILD-TYPE     18    151     36     29
D51V3, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           51                             18
  CLUS_2                           77                            151
  CLUS_3                           43                             36
  CLUS_4                          111                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       62     89     96
  DEL PEAK 30(13Q14.2) WILD-TYPE     82     60     66
D51V4, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           62                             82
  CLUS_2                           89                             60
  CLUS_3                           96                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       15     46     30
  DEL PEAK 30(13Q14.2) WILD-TYPE     29     27     34
D51V5, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           15                             29
  CLUS_2                           46                             27
  CLUS_3                           30                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED       26     11     30     13     11
  DEL PEAK 30(13Q14.2) WILD-TYPE     14     22     15     18     21
D51V6, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           26                             14
  CLUS_2                           11                             22
  CLUS_3                           30                             15
  CLUS_4                           13                             18
  CLUS_5                           11                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       70    126     83
  DEL PEAK 30(13Q14.2) WILD-TYPE     96     69     68
D51V7, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           70                             96
  CLUS_2                          126                             69
  CLUS_3                           83                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(13Q14.2) MUTATED       38     78     61     12     41     21
  DEL PEAK 30(13Q14.2) WILD-TYPE     40     32     36     36     12     28
                                vv
clus                             CLUS_7
  DEL PEAK 30(13Q14.2) MUTATED       28
  DEL PEAK 30(13Q14.2) WILD-TYPE     49
D51V8, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           38                             40
  CLUS_2                           78                             32
  CLUS_3                           61                             36
  CLUS_4                           12                             36
  CLUS_5                           41                             12
  CLUS_6                           21                             28
  CLUS_7                           28                             49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       84    139     55
  DEL PEAK 30(13Q14.2) WILD-TYPE    105     89     38
D51V9, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           84                            105
  CLUS_2                          139                             89
  CLUS_3                           55                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       33    123     63     59
  DEL PEAK 30(13Q14.2) WILD-TYPE     38     75     78     41
D51V10, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           33                             38
  CLUS_2                          123                             75
  CLUS_3                           63                             78
  CLUS_4                           59                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       71    122     47
  DEL PEAK 30(13Q14.2) WILD-TYPE     74     76     44
D51V11, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           71                             74
  CLUS_2                          122                             76
  CLUS_3                           47                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       39    156     45
  DEL PEAK 30(13Q14.2) WILD-TYPE     64     92     38
D51V12, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           39                             64
  CLUS_2                          156                             92
  CLUS_3                           45                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 31(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q34) MUTATED        3      5      1      4
  DEL PEAK 31(13Q34) WILD-TYPE      2      4     11      2
D52V1, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          5                            4
  CLUS_3                          1                           11
  CLUS_4                          4                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED        3      5      5
  DEL PEAK 31(13Q34) WILD-TYPE     11      6      2
D52V2, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          5                            6
  CLUS_3                          5                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q34) MUTATED       49     67     37     90
  DEL PEAK 31(13Q34) WILD-TYPE     20    161     42     50
D52V3, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         49                           20
  CLUS_2                         67                          161
  CLUS_3                         37                           42
  CLUS_4                         90                           50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       55     74     84
  DEL PEAK 31(13Q34) WILD-TYPE     89     75     78
D52V4, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         55                           89
  CLUS_2                         74                           75
  CLUS_3                         84                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       10     41     24
  DEL PEAK 31(13Q34) WILD-TYPE     34     32     40
D52V5, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         10                           34
  CLUS_2                         41                           32
  CLUS_3                         24                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(13Q34) MUTATED       23     10     23     11      8
  DEL PEAK 31(13Q34) WILD-TYPE     17     23     22     20     24
D52V6, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         23                           17
  CLUS_2                         10                           23
  CLUS_3                         23                           22
  CLUS_4                         11                           20
  CLUS_5                          8                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       58    108     74
  DEL PEAK 31(13Q34) WILD-TYPE    108     87     77
D52V7, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         58                          108
  CLUS_2                        108                           87
  CLUS_3                         74                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 31(13Q34) MUTATED       31     70     49     14     34     19     23
  DEL PEAK 31(13Q34) WILD-TYPE     47     40     48     34     19     30     54
D52V8, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         31                           47
  CLUS_2                         70                           40
  CLUS_3                         49                           48
  CLUS_4                         14                           34
  CLUS_5                         34                           19
  CLUS_6                         19                           30
  CLUS_7                         23                           54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       73    113     53
  DEL PEAK 31(13Q34) WILD-TYPE    116    115     40
D52V9, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         73                          116
  CLUS_2                        113                          115
  CLUS_3                         53                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q34) MUTATED       31    108     53     47
  DEL PEAK 31(13Q34) WILD-TYPE     40     90     88     53
D52V10, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         31                           40
  CLUS_2                        108                           90
  CLUS_3                         53                           88
  CLUS_4                         47                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       60     99     46
  DEL PEAK 31(13Q34) WILD-TYPE     85     99     45
D52V11, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         60                           85
  CLUS_2                         99                           99
  CLUS_3                         46                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       37    129     39
  DEL PEAK 31(13Q34) WILD-TYPE     66    119     44
D52V12, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         37                           66
  CLUS_2                        129                          119
  CLUS_3                         39                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 32(14Q32.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q32.12) MUTATED        1      3      3      3
  DEL PEAK 32(14Q32.12) WILD-TYPE      4      6      9      3
D53V1, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             3                               6
  CLUS_3                             3                               9
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.12) MUTATED        3      3      4
  DEL PEAK 32(14Q32.12) WILD-TYPE     11      8      3
D53V2, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             3                               8
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q32.12) MUTATED       15     44     41     44
  DEL PEAK 32(14Q32.12) WILD-TYPE     54    184     38     96
D53V3, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            15                              54
  CLUS_2                            44                             184
  CLUS_3                            41                              38
  CLUS_4                            44                              96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.12) MUTATED       27     54     44
  DEL PEAK 32(14Q32.12) WILD-TYPE    117     95    118
D53V4, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            27                             117
  CLUS_2                            54                              95
  CLUS_3                            44                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.12) MUTATED       12     21     12
  DEL PEAK 32(14Q32.12) WILD-TYPE     32     52     52
D53V5, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            12                              32
  CLUS_2                            21                              52
  CLUS_3                            12                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(14Q32.12) MUTATED        8      6     15      9      7
  DEL PEAK 32(14Q32.12) WILD-TYPE     32     27     30     22     25
D53V6, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                             8                              32
  CLUS_2                             6                              27
  CLUS_3                            15                              30
  CLUS_4                             9                              22
  CLUS_5                             7                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.12) MUTATED       40     54     49
  DEL PEAK 32(14Q32.12) WILD-TYPE    126    141    102
D53V7, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            40                             126
  CLUS_2                            54                             141
  CLUS_3                            49                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(14Q32.12) MUTATED       17     31     27     12     16     25
  DEL PEAK 32(14Q32.12) WILD-TYPE     61     79     70     36     37     24
                                 vv
clus                              CLUS_7
  DEL PEAK 32(14Q32.12) MUTATED       15
  DEL PEAK 32(14Q32.12) WILD-TYPE     62
D53V8, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            17                              61
  CLUS_2                            31                              79
  CLUS_3                            27                              70
  CLUS_4                            12                              36
  CLUS_5                            16                              37
  CLUS_6                            25                              24
  CLUS_7                            15                              62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.12) MUTATED       48     79     17
  DEL PEAK 32(14Q32.12) WILD-TYPE    141    149     76
D53V9, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            48                             141
  CLUS_2                            79                             149
  CLUS_3                            17                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q32.12) MUTATED       23     56     31     34
  DEL PEAK 32(14Q32.12) WILD-TYPE     48    142    110     66
D53V10, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            23                              48
  CLUS_2                            56                             142
  CLUS_3                            31                             110
  CLUS_4                            34                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.12) MUTATED       48     58     17
  DEL PEAK 32(14Q32.12) WILD-TYPE     97    140     74
D53V11, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            48                              97
  CLUS_2                            58                             140
  CLUS_3                            17                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.12) MUTATED       22     81     20
  DEL PEAK 32(14Q32.12) WILD-TYPE     81    167     63
D53V12, multiclass
        clus
vv       DEL PEAK 32(14Q32.12) MUTATED DEL PEAK 32(14Q32.12) WILD-TYPE
  CLUS_1                            22                              81
  CLUS_2                            81                             167
  CLUS_3                            20                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 33(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q11.2) MUTATED        4      6      4      4
  DEL PEAK 33(15Q11.2) WILD-TYPE      1      3      8      2
D54V1, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            6                              3
  CLUS_3                            4                              8
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED        5      8      5
  DEL PEAK 33(15Q11.2) WILD-TYPE      9      3      2
D54V2, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            8                              3
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q11.2) MUTATED       46     77     37    102
  DEL PEAK 33(15Q11.2) WILD-TYPE     23    151     42     38
D54V3, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           46                             23
  CLUS_2                           77                            151
  CLUS_3                           37                             42
  CLUS_4                          102                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       54     79     94
  DEL PEAK 33(15Q11.2) WILD-TYPE     90     70     68
D54V4, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           54                             90
  CLUS_2                           79                             70
  CLUS_3                           94                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       16     43     30
  DEL PEAK 33(15Q11.2) WILD-TYPE     28     30     34
D54V5, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           43                             30
  CLUS_3                           30                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q11.2) MUTATED       23      9     29     11     17
  DEL PEAK 33(15Q11.2) WILD-TYPE     17     24     16     20     15
D54V6, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           23                             17
  CLUS_2                            9                             24
  CLUS_3                           29                             16
  CLUS_4                           11                             20
  CLUS_5                           17                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       72    119     67
  DEL PEAK 33(15Q11.2) WILD-TYPE     94     76     84
D54V7, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           72                             94
  CLUS_2                          119                             76
  CLUS_3                           67                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q11.2) MUTATED       39     73     62     11     36      9
  DEL PEAK 33(15Q11.2) WILD-TYPE     39     37     35     37     17     40
                                vv
clus                             CLUS_7
  DEL PEAK 33(15Q11.2) MUTATED       28
  DEL PEAK 33(15Q11.2) WILD-TYPE     49
D54V8, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           39                             39
  CLUS_2                           73                             37
  CLUS_3                           62                             35
  CLUS_4                           11                             37
  CLUS_5                           36                             17
  CLUS_6                            9                             40
  CLUS_7                           28                             49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       71    133     55
  DEL PEAK 33(15Q11.2) WILD-TYPE    118     95     38
D54V9, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           71                            118
  CLUS_2                          133                             95
  CLUS_3                           55                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q11.2) MUTATED       28    116     61     54
  DEL PEAK 33(15Q11.2) WILD-TYPE     43     82     80     46
D54V10, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           28                             43
  CLUS_2                          116                             82
  CLUS_3                           61                             80
  CLUS_4                           54                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       66    106     48
  DEL PEAK 33(15Q11.2) WILD-TYPE     79     92     43
D54V11, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           66                             79
  CLUS_2                          106                             92
  CLUS_3                           48                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       33    136     51
  DEL PEAK 33(15Q11.2) WILD-TYPE     70    112     32
D54V12, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           33                             70
  CLUS_2                          136                            112
  CLUS_3                           51                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 34(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q15.1) MUTATED        4      6      4      5
  DEL PEAK 34(15Q15.1) WILD-TYPE      1      3      8      1
D55V1, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            6                              3
  CLUS_3                            4                              8
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q15.1) MUTATED        5      8      6
  DEL PEAK 34(15Q15.1) WILD-TYPE      9      3      1
D55V2, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            8                              3
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q15.1) MUTATED       51     79     36    108
  DEL PEAK 34(15Q15.1) WILD-TYPE     18    149     43     32
D55V3, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           51                             18
  CLUS_2                           79                            149
  CLUS_3                           36                             43
  CLUS_4                          108                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q15.1) MUTATED       52     82    101
  DEL PEAK 34(15Q15.1) WILD-TYPE     92     67     61
D55V4, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           52                             92
  CLUS_2                           82                             67
  CLUS_3                          101                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q15.1) MUTATED       16     43     33
  DEL PEAK 34(15Q15.1) WILD-TYPE     28     30     31
D55V5, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           43                             30
  CLUS_3                           33                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(15Q15.1) MUTATED       23     11     30     11     17
  DEL PEAK 34(15Q15.1) WILD-TYPE     17     22     15     20     15
D55V6, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           23                             17
  CLUS_2                           11                             22
  CLUS_3                           30                             15
  CLUS_4                           11                             20
  CLUS_5                           17                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q15.1) MUTATED       73    126     71
  DEL PEAK 34(15Q15.1) WILD-TYPE     93     69     80
D55V7, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           73                             93
  CLUS_2                          126                             69
  CLUS_3                           71                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(15Q15.1) MUTATED       39     76     64     12     39     11
  DEL PEAK 34(15Q15.1) WILD-TYPE     39     34     33     36     14     38
                                vv
clus                             CLUS_7
  DEL PEAK 34(15Q15.1) MUTATED       29
  DEL PEAK 34(15Q15.1) WILD-TYPE     48
D55V8, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           39                             39
  CLUS_2                           76                             34
  CLUS_3                           64                             33
  CLUS_4                           12                             36
  CLUS_5                           39                             14
  CLUS_6                           11                             38
  CLUS_7                           29                             48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q15.1) MUTATED       73    141     57
  DEL PEAK 34(15Q15.1) WILD-TYPE    116     87     36
D55V9, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           73                            116
  CLUS_2                          141                             87
  CLUS_3                           57                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q15.1) MUTATED       30    125     59     57
  DEL PEAK 34(15Q15.1) WILD-TYPE     41     73     82     43
D55V10, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           30                             41
  CLUS_2                          125                             73
  CLUS_3                           59                             82
  CLUS_4                           57                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q15.1) MUTATED       68    108     52
  DEL PEAK 34(15Q15.1) WILD-TYPE     77     90     39
D55V11, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           68                             77
  CLUS_2                          108                             90
  CLUS_3                           52                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q15.1) MUTATED       33    146     49
  DEL PEAK 34(15Q15.1) WILD-TYPE     70    102     34
D55V12, multiclass
        clus
vv       DEL PEAK 34(15Q15.1) MUTATED DEL PEAK 34(15Q15.1) WILD-TYPE
  CLUS_1                           33                             70
  CLUS_2                          146                            102
  CLUS_3                           49                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 35(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED        4      3      2      1
  DEL PEAK 35(16Q23.1) WILD-TYPE      1      6     10      5
D56V1, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            3                              6
  CLUS_3                            2                             10
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED        4      4      2
  DEL PEAK 35(16Q23.1) WILD-TYPE     10      7      5
D56V2, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED       30     48     34     58
  DEL PEAK 35(16Q23.1) WILD-TYPE     39    180     45     82
D56V3, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           30                             39
  CLUS_2                           48                            180
  CLUS_3                           34                             45
  CLUS_4                           58                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       26     55     66
  DEL PEAK 35(16Q23.1) WILD-TYPE    118     94     96
D56V4, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           26                            118
  CLUS_2                           55                             94
  CLUS_3                           66                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       10     24     25
  DEL PEAK 35(16Q23.1) WILD-TYPE     34     49     39
D56V5, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                           24                             49
  CLUS_3                           25                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q23.1) MUTATED        8     10     26      7      8
  DEL PEAK 35(16Q23.1) WILD-TYPE     32     23     19     24     24
D56V6, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            8                             32
  CLUS_2                           10                             23
  CLUS_3                           26                             19
  CLUS_4                            7                             24
  CLUS_5                            8                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       36     92     42
  DEL PEAK 35(16Q23.1) WILD-TYPE    130    103    109
D56V7, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           36                            130
  CLUS_2                           92                            103
  CLUS_3                           42                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q23.1) MUTATED       20     60     37      9     17     17
  DEL PEAK 35(16Q23.1) WILD-TYPE     58     50     60     39     36     32
                                vv
clus                             CLUS_7
  DEL PEAK 35(16Q23.1) MUTATED       10
  DEL PEAK 35(16Q23.1) WILD-TYPE     67
D56V8, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           20                             58
  CLUS_2                           60                             50
  CLUS_3                           37                             60
  CLUS_4                            9                             39
  CLUS_5                           17                             36
  CLUS_6                           17                             32
  CLUS_7                           10                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       49     87     34
  DEL PEAK 35(16Q23.1) WILD-TYPE    140    141     59
D56V9, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           49                            140
  CLUS_2                           87                            141
  CLUS_3                           34                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED       20     77     32     41
  DEL PEAK 35(16Q23.1) WILD-TYPE     51    121    109     59
D56V10, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           20                             51
  CLUS_2                           77                            121
  CLUS_3                           32                            109
  CLUS_4                           41                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       46     67     28
  DEL PEAK 35(16Q23.1) WILD-TYPE     99    131     63
D56V11, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           46                             99
  CLUS_2                           67                            131
  CLUS_3                           28                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       18     94     29
  DEL PEAK 35(16Q23.1) WILD-TYPE     85    154     54
D56V12, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           94                            154
  CLUS_3                           29                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 36(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P13.3) MUTATED        4      5      7      5
  DEL PEAK 36(17P13.3) WILD-TYPE      1      4      5      1
D57V1, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            5                              4
  CLUS_3                            7                              5
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED        8      7      6
  DEL PEAK 36(17P13.3) WILD-TYPE      6      4      1
D57V2, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                            7                              4
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P13.3) MUTATED       39     84     45    113
  DEL PEAK 36(17P13.3) WILD-TYPE     30    144     34     27
D57V3, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           39                             30
  CLUS_2                           84                            144
  CLUS_3                           45                             34
  CLUS_4                          113                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       54     82    108
  DEL PEAK 36(17P13.3) WILD-TYPE     90     67     54
D57V4, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           54                             90
  CLUS_2                           82                             67
  CLUS_3                          108                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       19     55     33
  DEL PEAK 36(17P13.3) WILD-TYPE     25     18     31
D57V5, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           55                             18
  CLUS_3                           33                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17P13.3) MUTATED       29     10     33     17     18
  DEL PEAK 36(17P13.3) WILD-TYPE     11     23     12     14     14
D57V6, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           29                             11
  CLUS_2                           10                             23
  CLUS_3                           33                             12
  CLUS_4                           17                             14
  CLUS_5                           18                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       78    132     69
  DEL PEAK 36(17P13.3) WILD-TYPE     88     63     82
D57V7, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           78                             88
  CLUS_2                          132                             63
  CLUS_3                           69                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17P13.3) MUTATED       39     75     62     10     33     24
  DEL PEAK 36(17P13.3) WILD-TYPE     39     35     35     38     20     25
                                vv
clus                             CLUS_7
  DEL PEAK 36(17P13.3) MUTATED       36
  DEL PEAK 36(17P13.3) WILD-TYPE     41
D57V8, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           39                             39
  CLUS_2                           75                             35
  CLUS_3                           62                             35
  CLUS_4                           10                             38
  CLUS_5                           33                             20
  CLUS_6                           24                             25
  CLUS_7                           36                             41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       90    140     47
  DEL PEAK 36(17P13.3) WILD-TYPE     99     88     46
D57V9, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           90                             99
  CLUS_2                          140                             88
  CLUS_3                           47                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P13.3) MUTATED       30    118     69     60
  DEL PEAK 36(17P13.3) WILD-TYPE     41     80     72     40
D57V10, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           30                             41
  CLUS_2                          118                             80
  CLUS_3                           69                             72
  CLUS_4                           60                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       77    109     48
  DEL PEAK 36(17P13.3) WILD-TYPE     68     89     43
D57V11, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           77                             68
  CLUS_2                          109                             89
  CLUS_3                           48                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       40    147     47
  DEL PEAK 36(17P13.3) WILD-TYPE     63    101     36
D57V12, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           40                             63
  CLUS_2                          147                            101
  CLUS_3                           47                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 37(18Q21.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(18Q21.32) MUTATED        3      5      3      3
  DEL PEAK 37(18Q21.32) WILD-TYPE      2      4      9      3
D58V1, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             5                               4
  CLUS_3                             3                               9
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED        3      7      4
  DEL PEAK 37(18Q21.32) WILD-TYPE     11      4      3
D58V2, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             7                               4
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(18Q21.32) MUTATED       21     88     44     98
  DEL PEAK 37(18Q21.32) WILD-TYPE     48    140     35     42
D58V3, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            21                              48
  CLUS_2                            88                             140
  CLUS_3                            44                              35
  CLUS_4                            98                              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       69     74     80
  DEL PEAK 37(18Q21.32) WILD-TYPE     75     75     82
D58V4, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            69                              75
  CLUS_2                            74                              75
  CLUS_3                            80                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       17     45     31
  DEL PEAK 37(18Q21.32) WILD-TYPE     27     28     33
D58V5, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            17                              27
  CLUS_2                            45                              28
  CLUS_3                            31                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(18Q21.32) MUTATED       18     10     35     16     14
  DEL PEAK 37(18Q21.32) WILD-TYPE     22     23     10     15     18
D58V6, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            18                              22
  CLUS_2                            10                              23
  CLUS_3                            35                              10
  CLUS_4                            16                              15
  CLUS_5                            14                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       69    121     59
  DEL PEAK 37(18Q21.32) WILD-TYPE     97     74     92
D58V7, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            69                              97
  CLUS_2                           121                              74
  CLUS_3                            59                              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(18Q21.32) MUTATED       39     63     57     10     17     29
  DEL PEAK 37(18Q21.32) WILD-TYPE     39     47     40     38     36     20
                                 vv
clus                              CLUS_7
  DEL PEAK 37(18Q21.32) MUTATED       34
  DEL PEAK 37(18Q21.32) WILD-TYPE     43
D58V8, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            39                              39
  CLUS_2                            63                              47
  CLUS_3                            57                              40
  CLUS_4                            10                              38
  CLUS_5                            17                              36
  CLUS_6                            29                              20
  CLUS_7                            34                              43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       78    116     54
  DEL PEAK 37(18Q21.32) WILD-TYPE    111    112     39
D58V9, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            78                             111
  CLUS_2                           116                             112
  CLUS_3                            54                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(18Q21.32) MUTATED       27    100     65     56
  DEL PEAK 37(18Q21.32) WILD-TYPE     44     98     76     44
D58V10, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            27                              44
  CLUS_2                           100                              98
  CLUS_3                            65                              76
  CLUS_4                            56                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       73     96     47
  DEL PEAK 37(18Q21.32) WILD-TYPE     72    102     44
D58V11, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            73                              72
  CLUS_2                            96                             102
  CLUS_3                            47                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       41    133     42
  DEL PEAK 37(18Q21.32) WILD-TYPE     62    115     41
D58V12, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            41                              62
  CLUS_2                           133                             115
  CLUS_3                            42                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 38(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19P13.3) MUTATED        1      7      7      4
  DEL PEAK 38(19P13.3) WILD-TYPE      4      2      5      2
D59V1, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            7                              2
  CLUS_3                            7                              5
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED        8      7      4
  DEL PEAK 38(19P13.3) WILD-TYPE      6      4      3
D59V2, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                            7                              4
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19P13.3) MUTATED       48     85     67     83
  DEL PEAK 38(19P13.3) WILD-TYPE     21    143     12     57
D59V3, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           48                             21
  CLUS_2                           85                            143
  CLUS_3                           67                             12
  CLUS_4                           83                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       54    118     76
  DEL PEAK 38(19P13.3) WILD-TYPE     90     31     86
D59V4, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           54                             90
  CLUS_2                          118                             31
  CLUS_3                           76                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       25     42     31
  DEL PEAK 38(19P13.3) WILD-TYPE     19     31     33
D59V5, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           25                             19
  CLUS_2                           42                             31
  CLUS_3                           31                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(19P13.3) MUTATED       20     23     26     15     14
  DEL PEAK 38(19P13.3) WILD-TYPE     20     10     19     16     18
D59V6, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           20                             20
  CLUS_2                           23                             10
  CLUS_3                           26                             19
  CLUS_4                           15                             16
  CLUS_5                           14                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       56    113    111
  DEL PEAK 38(19P13.3) WILD-TYPE    110     82     40
D59V7, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           56                            110
  CLUS_2                          113                             82
  CLUS_3                          111                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19P13.3) MUTATED       26     53     64     39     34     42
  DEL PEAK 38(19P13.3) WILD-TYPE     52     57     33      9     19      7
                                vv
clus                             CLUS_7
  DEL PEAK 38(19P13.3) MUTATED       22
  DEL PEAK 38(19P13.3) WILD-TYPE     55
D59V8, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           26                             52
  CLUS_2                           53                             57
  CLUS_3                           64                             33
  CLUS_4                           39                              9
  CLUS_5                           34                             19
  CLUS_6                           42                              7
  CLUS_7                           22                             55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       81    153     43
  DEL PEAK 38(19P13.3) WILD-TYPE    108     75     50
D59V9, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           81                            108
  CLUS_2                          153                             75
  CLUS_3                           43                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19P13.3) MUTATED       36    116     52     73
  DEL PEAK 38(19P13.3) WILD-TYPE     35     82     89     27
D59V10, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           36                             35
  CLUS_2                          116                             82
  CLUS_3                           52                             89
  CLUS_4                           73                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       82    112     40
  DEL PEAK 38(19P13.3) WILD-TYPE     63     86     51
D59V11, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           82                             63
  CLUS_2                          112                             86
  CLUS_3                           40                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       47    153     34
  DEL PEAK 38(19P13.3) WILD-TYPE     56     95     49
D59V12, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           47                             56
  CLUS_2                          153                             95
  CLUS_3                           34                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 39(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(19P13.2) MUTATED        2      6      6      4
  DEL PEAK 39(19P13.2) WILD-TYPE      3      3      6      2
D60V1, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            6                              3
  CLUS_3                            6                              6
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED        7      7      4
  DEL PEAK 39(19P13.2) WILD-TYPE      7      4      3
D60V2, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                            7                              4
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(19P13.2) MUTATED       49     82     66     83
  DEL PEAK 39(19P13.2) WILD-TYPE     20    146     13     57
D60V3, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           49                             20
  CLUS_2                           82                            146
  CLUS_3                           66                             13
  CLUS_4                           83                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       50    118     78
  DEL PEAK 39(19P13.2) WILD-TYPE     94     31     84
D60V4, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           50                             94
  CLUS_2                          118                             31
  CLUS_3                           78                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       25     41     32
  DEL PEAK 39(19P13.2) WILD-TYPE     19     32     32
D60V5, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           25                             19
  CLUS_2                           41                             32
  CLUS_3                           32                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(19P13.2) MUTATED       18     23     27     16     14
  DEL PEAK 39(19P13.2) WILD-TYPE     22     10     18     15     18
D60V6, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           18                             22
  CLUS_2                           23                             10
  CLUS_3                           27                             18
  CLUS_4                           16                             15
  CLUS_5                           14                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       54    110    113
  DEL PEAK 39(19P13.2) WILD-TYPE    112     85     38
D60V7, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           54                            112
  CLUS_2                          110                             85
  CLUS_3                          113                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(19P13.2) MUTATED       25     55     61     39     37     38
  DEL PEAK 39(19P13.2) WILD-TYPE     53     55     36      9     16     11
                                vv
clus                             CLUS_7
  DEL PEAK 39(19P13.2) MUTATED       22
  DEL PEAK 39(19P13.2) WILD-TYPE     55
D60V8, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           25                             53
  CLUS_2                           55                             55
  CLUS_3                           61                             36
  CLUS_4                           39                              9
  CLUS_5                           37                             16
  CLUS_6                           38                             11
  CLUS_7                           22                             55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       79    151     44
  DEL PEAK 39(19P13.2) WILD-TYPE    110     77     49
D60V9, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           79                            110
  CLUS_2                          151                             77
  CLUS_3                           44                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(19P13.2) MUTATED       37    114     50     73
  DEL PEAK 39(19P13.2) WILD-TYPE     34     84     91     27
D60V10, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           37                             34
  CLUS_2                          114                             84
  CLUS_3                           50                             91
  CLUS_4                           73                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       81    114     39
  DEL PEAK 39(19P13.2) WILD-TYPE     64     84     52
D60V11, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           81                             64
  CLUS_2                          114                             84
  CLUS_3                           39                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       46    153     35
  DEL PEAK 39(19P13.2) WILD-TYPE     57     95     48
D60V12, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           46                             57
  CLUS_2                          153                             95
  CLUS_3                           35                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 40(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(19P13.2) MUTATED        1      5      5      3
  DEL PEAK 40(19P13.2) WILD-TYPE      4      4      7      3
D61V1, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            5                              4
  CLUS_3                            5                              7
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED        6      5      3
  DEL PEAK 40(19P13.2) WILD-TYPE      8      6      4
D61V2, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            5                              6
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(19P13.2) MUTATED       50     76     64     80
  DEL PEAK 40(19P13.2) WILD-TYPE     19    152     15     60
D61V3, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           50                             19
  CLUS_2                           76                            152
  CLUS_3                           64                             15
  CLUS_4                           80                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       45    115     77
  DEL PEAK 40(19P13.2) WILD-TYPE     99     34     85
D61V4, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           45                             99
  CLUS_2                          115                             34
  CLUS_3                           77                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       24     38     32
  DEL PEAK 40(19P13.2) WILD-TYPE     20     35     32
D61V5, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           24                             20
  CLUS_2                           38                             35
  CLUS_3                           32                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(19P13.2) MUTATED       16     23     26     16     13
  DEL PEAK 40(19P13.2) WILD-TYPE     24     10     19     15     19
D61V6, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           16                             24
  CLUS_2                           23                             10
  CLUS_3                           26                             19
  CLUS_4                           16                             15
  CLUS_5                           13                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       51    103    113
  DEL PEAK 40(19P13.2) WILD-TYPE    115     92     38
D61V7, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           51                            115
  CLUS_2                          103                             92
  CLUS_3                          113                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(19P13.2) MUTATED       22     52     55     38     40     38
  DEL PEAK 40(19P13.2) WILD-TYPE     56     58     42     10     13     11
                                vv
clus                             CLUS_7
  DEL PEAK 40(19P13.2) MUTATED       22
  DEL PEAK 40(19P13.2) WILD-TYPE     55
D61V8, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           22                             56
  CLUS_2                           52                             58
  CLUS_3                           55                             42
  CLUS_4                           38                             10
  CLUS_5                           40                             13
  CLUS_6                           38                             11
  CLUS_7                           22                             55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       76    148     40
  DEL PEAK 40(19P13.2) WILD-TYPE    113     80     53
D61V9, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           76                            113
  CLUS_2                          148                             80
  CLUS_3                           40                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(19P13.2) MUTATED       36    108     48     72
  DEL PEAK 40(19P13.2) WILD-TYPE     35     90     93     28
D61V10, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           36                             35
  CLUS_2                          108                             90
  CLUS_3                           48                             93
  CLUS_4                           72                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       77    113     38
  DEL PEAK 40(19P13.2) WILD-TYPE     68     85     53
D61V11, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           77                             68
  CLUS_2                          113                             85
  CLUS_3                           38                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       43    152     33
  DEL PEAK 40(19P13.2) WILD-TYPE     60     96     50
D61V12, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           43                             60
  CLUS_2                          152                             96
  CLUS_3                           33                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 41(19Q11) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(19Q11) MUTATED        1      2      3      2
  DEL PEAK 41(19Q11) WILD-TYPE      4      7      9      4
D62V1, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                          1                            4
  CLUS_2                          2                            7
  CLUS_3                          3                            9
  CLUS_4                          2                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q11) MUTATED        4      2      2
  DEL PEAK 41(19Q11) WILD-TYPE     10      9      5
D62V2, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          2                            9
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(19Q11) MUTATED       24     37     19     54
  DEL PEAK 41(19Q11) WILD-TYPE     45    191     60     86
D62V3, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         24                           45
  CLUS_2                         37                          191
  CLUS_3                         19                           60
  CLUS_4                         54                           86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q11) MUTATED       21     44     51
  DEL PEAK 41(19Q11) WILD-TYPE    123    105    111
D62V4, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         21                          123
  CLUS_2                         44                          105
  CLUS_3                         51                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q11) MUTATED        8     26     15
  DEL PEAK 41(19Q11) WILD-TYPE     36     47     49
D62V5, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                          8                           36
  CLUS_2                         26                           47
  CLUS_3                         15                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(19Q11) MUTATED       13      8     16      7      5
  DEL PEAK 41(19Q11) WILD-TYPE     27     25     29     24     27
D62V6, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         13                           27
  CLUS_2                          8                           25
  CLUS_3                         16                           29
  CLUS_4                          7                           24
  CLUS_5                          5                           27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q11) MUTATED       29     65     39
  DEL PEAK 41(19Q11) WILD-TYPE    137    130    112
D62V7, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         29                          137
  CLUS_2                         65                          130
  CLUS_3                         39                          112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 41(19Q11) MUTATED       15     39     31     11     15     14      8
  DEL PEAK 41(19Q11) WILD-TYPE     63     71     66     37     38     35     69
D62V8, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         15                           63
  CLUS_2                         39                           71
  CLUS_3                         31                           66
  CLUS_4                         11                           37
  CLUS_5                         15                           38
  CLUS_6                         14                           35
  CLUS_7                          8                           69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q11) MUTATED       31     67     30
  DEL PEAK 41(19Q11) WILD-TYPE    158    161     63
D62V9, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         31                          158
  CLUS_2                         67                          161
  CLUS_3                         30                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(19Q11) MUTATED       13     61     20     34
  DEL PEAK 41(19Q11) WILD-TYPE     58    137    121     66
D62V10, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         13                           58
  CLUS_2                         61                          137
  CLUS_3                         20                          121
  CLUS_4                         34                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q11) MUTATED       32     52     27
  DEL PEAK 41(19Q11) WILD-TYPE    113    146     64
D62V11, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         32                          113
  CLUS_2                         52                          146
  CLUS_3                         27                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q11) MUTATED       18     74     19
  DEL PEAK 41(19Q11) WILD-TYPE     85    174     64
D62V12, multiclass
        clus
vv       DEL PEAK 41(19Q11) MUTATED DEL PEAK 41(19Q11) WILD-TYPE
  CLUS_1                         18                           85
  CLUS_2                         74                          174
  CLUS_3                         19                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 42(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.33) MUTATED        2      5      3      3
  DEL PEAK 42(19Q13.33) WILD-TYPE      3      4      9      3
D63V1, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             5                               4
  CLUS_3                             3                               9
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.33) MUTATED        3      7      3
  DEL PEAK 42(19Q13.33) WILD-TYPE     11      4      4
D63V2, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             7                               4
  CLUS_3                             3                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.33) MUTATED       30     52     38     74
  DEL PEAK 42(19Q13.33) WILD-TYPE     39    176     41     66
D63V3, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            30                              39
  CLUS_2                            52                             176
  CLUS_3                            38                              41
  CLUS_4                            74                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.33) MUTATED       25     72     66
  DEL PEAK 42(19Q13.33) WILD-TYPE    119     77     96
D63V4, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            25                             119
  CLUS_2                            72                              77
  CLUS_3                            66                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.33) MUTATED       15     32     20
  DEL PEAK 42(19Q13.33) WILD-TYPE     29     41     44
D63V5, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            15                              29
  CLUS_2                            32                              41
  CLUS_3                            20                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(19Q13.33) MUTATED       12     15     22      9      9
  DEL PEAK 42(19Q13.33) WILD-TYPE     28     18     23     22     23
D63V6, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            12                              28
  CLUS_2                            15                              18
  CLUS_3                            22                              23
  CLUS_4                             9                              22
  CLUS_5                             9                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.33) MUTATED       38     85     68
  DEL PEAK 42(19Q13.33) WILD-TYPE    128    110     83
D63V7, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            38                             128
  CLUS_2                            85                             110
  CLUS_3                            68                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(19Q13.33) MUTATED       19     46     45     23     24     23
  DEL PEAK 42(19Q13.33) WILD-TYPE     59     64     52     25     29     26
                                 vv
clus                              CLUS_7
  DEL PEAK 42(19Q13.33) MUTATED       11
  DEL PEAK 42(19Q13.33) WILD-TYPE     66
D63V8, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            19                              59
  CLUS_2                            46                              64
  CLUS_3                            45                              52
  CLUS_4                            23                              25
  CLUS_5                            24                              29
  CLUS_6                            23                              26
  CLUS_7                            11                              66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.33) MUTATED       47    107     35
  DEL PEAK 42(19Q13.33) WILD-TYPE    142    121     58
D63V9, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            47                             142
  CLUS_2                           107                             121
  CLUS_3                            35                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.33) MUTATED       22     87     28     52
  DEL PEAK 42(19Q13.33) WILD-TYPE     49    111    113     48
D63V10, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            22                              49
  CLUS_2                            87                             111
  CLUS_3                            28                             113
  CLUS_4                            52                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.33) MUTATED       49     76     30
  DEL PEAK 42(19Q13.33) WILD-TYPE     96    122     61
D63V11, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            49                              96
  CLUS_2                            76                             122
  CLUS_3                            30                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.33) MUTATED       27    103     25
  DEL PEAK 42(19Q13.33) WILD-TYPE     76    145     58
D63V12, multiclass
        clus
vv       DEL PEAK 42(19Q13.33) MUTATED DEL PEAK 42(19Q13.33) WILD-TYPE
  CLUS_1                            27                              76
  CLUS_2                           103                             145
  CLUS_3                            25                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 43(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20P13) MUTATED        3      4      1      2
  DEL PEAK 43(20P13) WILD-TYPE      2      5     11      4
D64V1, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          4                            5
  CLUS_3                          1                           11
  CLUS_4                          2                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P13) MUTATED        2      5      3
  DEL PEAK 43(20P13) WILD-TYPE     12      6      4
D64V2, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          5                            6
  CLUS_3                          3                            4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20P13) MUTATED       10     40     24     57
  DEL PEAK 43(20P13) WILD-TYPE     59    188     55     83
D64V3, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         10                           59
  CLUS_2                         40                          188
  CLUS_3                         24                           55
  CLUS_4                         57                           83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P13) MUTATED       32     26     58
  DEL PEAK 43(20P13) WILD-TYPE    112    123    104
D64V4, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         32                          112
  CLUS_2                         26                          123
  CLUS_3                         58                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P13) MUTATED        6     30     15
  DEL PEAK 43(20P13) WILD-TYPE     38     43     49
D64V5, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                          6                           38
  CLUS_2                         30                           43
  CLUS_3                         15                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(20P13) MUTATED       15      2     21      7      6
  DEL PEAK 43(20P13) WILD-TYPE     25     31     24     24     26
D64V6, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         15                           25
  CLUS_2                          2                           31
  CLUS_3                         21                           24
  CLUS_4                          7                           24
  CLUS_5                          6                           26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P13) MUTATED       39     72     19
  DEL PEAK 43(20P13) WILD-TYPE    127    123    132
D64V7, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         39                          127
  CLUS_2                         72                          123
  CLUS_3                         19                          132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 43(20P13) MUTATED       23     44     20      0     10     16     17
  DEL PEAK 43(20P13) WILD-TYPE     55     66     77     48     43     33     60
D64V8, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         23                           55
  CLUS_2                         44                           66
  CLUS_3                         20                           77
  CLUS_4                          0                           48
  CLUS_5                         10                           43
  CLUS_6                         16                           33
  CLUS_7                         17                           60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P13) MUTATED       48     57     22
  DEL PEAK 43(20P13) WILD-TYPE    141    171     71
D64V9, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         48                          141
  CLUS_2                         57                          171
  CLUS_3                         22                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20P13) MUTATED       17     55     32     23
  DEL PEAK 43(20P13) WILD-TYPE     54    143    109     77
D64V10, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         17                           54
  CLUS_2                         55                          143
  CLUS_3                         32                          109
  CLUS_4                         23                           77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P13) MUTATED       38     51     17
  DEL PEAK 43(20P13) WILD-TYPE    107    147     74
D64V11, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         38                          107
  CLUS_2                         51                          147
  CLUS_3                         17                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P13) MUTATED       15     65     26
  DEL PEAK 43(20P13) WILD-TYPE     88    183     57
D64V12, multiclass
        clus
vv       DEL PEAK 43(20P13) MUTATED DEL PEAK 43(20P13) WILD-TYPE
  CLUS_1                         15                           88
  CLUS_2                         65                          183
  CLUS_3                         26                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 44(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20Q13.12) MUTATED        3      0      3      0
  DEL PEAK 44(20Q13.12) WILD-TYPE      2      9      9      6
D65V1, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             0                               9
  CLUS_3                             3                               9
  CLUS_4                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20Q13.12) MUTATED        4      1      1
  DEL PEAK 44(20Q13.12) WILD-TYPE     10     10      6
D65V2, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             1                              10
  CLUS_3                             1                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20Q13.12) MUTATED       13     34     15     18
  DEL PEAK 44(20Q13.12) WILD-TYPE     56    194     64    122
D65V3, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            13                              56
  CLUS_2                            34                             194
  CLUS_3                            15                              64
  CLUS_4                            18                             122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20Q13.12) MUTATED       17     22     28
  DEL PEAK 44(20Q13.12) WILD-TYPE    127    127    134
D65V4, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            17                             127
  CLUS_2                            22                             127
  CLUS_3                            28                             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20Q13.12) MUTATED        7     17      7
  DEL PEAK 44(20Q13.12) WILD-TYPE     37     56     57
D65V5, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                             7                              37
  CLUS_2                            17                              56
  CLUS_3                             7                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(20Q13.12) MUTATED       10      8      7      4      2
  DEL PEAK 44(20Q13.12) WILD-TYPE     30     25     38     27     30
D65V6, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            10                              30
  CLUS_2                             8                              25
  CLUS_3                             7                              38
  CLUS_4                             4                              27
  CLUS_5                             2                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20Q13.12) MUTATED       32     23     25
  DEL PEAK 44(20Q13.12) WILD-TYPE    134    172    126
D65V7, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            32                             134
  CLUS_2                            23                             172
  CLUS_3                            25                             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(20Q13.12) MUTATED       18     15      6     12      9     12
  DEL PEAK 44(20Q13.12) WILD-TYPE     60     95     91     36     44     37
                                 vv
clus                              CLUS_7
  DEL PEAK 44(20Q13.12) MUTATED        8
  DEL PEAK 44(20Q13.12) WILD-TYPE     69
D65V8, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            18                              60
  CLUS_2                            15                              95
  CLUS_3                             6                              91
  CLUS_4                            12                              36
  CLUS_5                             9                              44
  CLUS_6                            12                              37
  CLUS_7                             8                              69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20Q13.12) MUTATED       35     36      9
  DEL PEAK 44(20Q13.12) WILD-TYPE    154    192     84
D65V9, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            35                             154
  CLUS_2                            36                             192
  CLUS_3                             9                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20Q13.12) MUTATED       17     28     22     13
  DEL PEAK 44(20Q13.12) WILD-TYPE     54    170    119     87
D65V10, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            17                              54
  CLUS_2                            28                             170
  CLUS_3                            22                             119
  CLUS_4                            13                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20Q13.12) MUTATED       28     30      7
  DEL PEAK 44(20Q13.12) WILD-TYPE    117    168     84
D65V11, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            28                             117
  CLUS_2                            30                             168
  CLUS_3                             7                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20Q13.12) MUTATED       20     36      9
  DEL PEAK 44(20Q13.12) WILD-TYPE     83    212     74
D65V12, multiclass
        clus
vv       DEL PEAK 44(20Q13.12) MUTATED DEL PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            20                              83
  CLUS_2                            36                             212
  CLUS_3                             9                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 45(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED        2      4      2      4
  DEL PEAK 45(21Q11.2) WILD-TYPE      3      5     10      2
D66V1, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            4                              5
  CLUS_3                            2                             10
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED        3      5      4
  DEL PEAK 45(21Q11.2) WILD-TYPE     11      6      3
D66V2, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            5                              6
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       38     60     45     42
  DEL PEAK 45(21Q11.2) WILD-TYPE     31    168     34     98
D66V3, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           38                             31
  CLUS_2                           60                            168
  CLUS_3                           45                             34
  CLUS_4                           42                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       38     61     59
  DEL PEAK 45(21Q11.2) WILD-TYPE    106     88    103
D66V4, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           38                            106
  CLUS_2                           61                             88
  CLUS_3                           59                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED        8     31     29
  DEL PEAK 45(21Q11.2) WILD-TYPE     36     42     35
D66V5, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           31                             42
  CLUS_3                           29                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(21Q11.2) MUTATED       14     11     18     17      8
  DEL PEAK 45(21Q11.2) WILD-TYPE     26     22     27     14     24
D66V6, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           14                             26
  CLUS_2                           11                             22
  CLUS_3                           18                             27
  CLUS_4                           17                             14
  CLUS_5                            8                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       28     77     77
  DEL PEAK 45(21Q11.2) WILD-TYPE    138    118     74
D66V7, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           28                            138
  CLUS_2                           77                            118
  CLUS_3                           77                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(21Q11.2) MUTATED       11     39     41     12     35     22
  DEL PEAK 45(21Q11.2) WILD-TYPE     67     71     56     36     18     27
                                vv
clus                             CLUS_7
  DEL PEAK 45(21Q11.2) MUTATED       22
  DEL PEAK 45(21Q11.2) WILD-TYPE     55
D66V8, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           11                             67
  CLUS_2                           39                             71
  CLUS_3                           41                             56
  CLUS_4                           12                             36
  CLUS_5                           35                             18
  CLUS_6                           22                             27
  CLUS_7                           22                             55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       46    109     26
  DEL PEAK 45(21Q11.2) WILD-TYPE    143    119     67
D66V9, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           46                            143
  CLUS_2                          109                            119
  CLUS_3                           26                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       17     76     37     51
  DEL PEAK 45(21Q11.2) WILD-TYPE     54    122    104     49
D66V10, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           76                            122
  CLUS_3                           37                            104
  CLUS_4                           51                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       48     75     28
  DEL PEAK 45(21Q11.2) WILD-TYPE     97    123     63
D66V11, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           48                             97
  CLUS_2                           75                            123
  CLUS_3                           28                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       22    106     23
  DEL PEAK 45(21Q11.2) WILD-TYPE     81    142     60
D66V12, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           22                             81
  CLUS_2                          106                            142
  CLUS_3                           23                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 46(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED        3      7      2      4
  DEL PEAK 46(22Q13.32) WILD-TYPE      2      2     10      2
D67V1, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             7                               2
  CLUS_3                             2                              10
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED        4      8      4
  DEL PEAK 46(22Q13.32) WILD-TYPE     10      3      3
D67V2, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             8                               3
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       52     72     45     86
  DEL PEAK 46(22Q13.32) WILD-TYPE     17    156     34     54
D67V3, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            52                              17
  CLUS_2                            72                             156
  CLUS_3                            45                              34
  CLUS_4                            86                              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       41     94     90
  DEL PEAK 46(22Q13.32) WILD-TYPE    103     55     72
D67V4, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            41                             103
  CLUS_2                            94                              55
  CLUS_3                            90                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       18     38     31
  DEL PEAK 46(22Q13.32) WILD-TYPE     26     35     33
D67V5, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            18                              26
  CLUS_2                            38                              35
  CLUS_3                            31                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(22Q13.32) MUTATED       17     13     27     16     14
  DEL PEAK 46(22Q13.32) WILD-TYPE     23     20     18     15     18
D67V6, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            17                              23
  CLUS_2                            13                              20
  CLUS_3                            27                              18
  CLUS_4                            16                              15
  CLUS_5                            14                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       53    113     86
  DEL PEAK 46(22Q13.32) WILD-TYPE    113     82     65
D67V7, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            53                             113
  CLUS_2                           113                              82
  CLUS_3                            86                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(22Q13.32) MUTATED       26     67     54     15     42     28
  DEL PEAK 46(22Q13.32) WILD-TYPE     52     43     43     33     11     21
                                 vv
clus                              CLUS_7
  DEL PEAK 46(22Q13.32) MUTATED       20
  DEL PEAK 46(22Q13.32) WILD-TYPE     57
D67V8, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            26                              52
  CLUS_2                            67                              43
  CLUS_3                            54                              43
  CLUS_4                            15                              33
  CLUS_5                            42                              11
  CLUS_6                            28                              21
  CLUS_7                            20                              57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       67    139     45
  DEL PEAK 46(22Q13.32) WILD-TYPE    122     89     48
D67V9, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            67                             122
  CLUS_2                           139                              89
  CLUS_3                            45                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       24    116     49     62
  DEL PEAK 46(22Q13.32) WILD-TYPE     47     82     92     38
D67V10, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            24                              47
  CLUS_2                           116                              82
  CLUS_3                            49                              92
  CLUS_4                            62                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       70    110     34
  DEL PEAK 46(22Q13.32) WILD-TYPE     75     88     57
D67V11, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            70                              75
  CLUS_2                           110                              88
  CLUS_3                            34                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       34    145     35
  DEL PEAK 46(22Q13.32) WILD-TYPE     69    103     48
D67V12, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            34                              69
  CLUS_2                           145                             103
  CLUS_3                            35                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 47(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP22.2) MUTATED        2      2      4      3
  DEL PEAK 47(XP22.2) WILD-TYPE      3      7      8      3
D68V1, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           2                             7
  CLUS_3                           4                             8
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP22.2) MUTATED        5      3      3
  DEL PEAK 47(XP22.2) WILD-TYPE      9      8      4
D68V2, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           3                             8
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP22.2) MUTATED       18     37     21     67
  DEL PEAK 47(XP22.2) WILD-TYPE     51    191     58     73
D68V3, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                          18                            51
  CLUS_2                          37                           191
  CLUS_3                          21                            58
  CLUS_4                          67                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP22.2) MUTATED       28     41     55
  DEL PEAK 47(XP22.2) WILD-TYPE    116    108    107
D68V4, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                          28                           116
  CLUS_2                          41                           108
  CLUS_3                          55                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP22.2) MUTATED        6     22     16
  DEL PEAK 47(XP22.2) WILD-TYPE     38     51     48
D68V5, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                           6                            38
  CLUS_2                          22                            51
  CLUS_3                          16                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(XP22.2) MUTATED        7      3     19      6      9
  DEL PEAK 47(XP22.2) WILD-TYPE     33     30     26     25     23
D68V6, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                           7                            33
  CLUS_2                           3                            30
  CLUS_3                          19                            26
  CLUS_4                           6                            25
  CLUS_5                           9                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP22.2) MUTATED       39     69     34
  DEL PEAK 47(XP22.2) WILD-TYPE    127    126    117
D68V7, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                          39                           127
  CLUS_2                          69                           126
  CLUS_3                          34                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(XP22.2) MUTATED       23     48     33      9      8      8
  DEL PEAK 47(XP22.2) WILD-TYPE     55     62     64     39     45     41
                               vv
clus                            CLUS_7
  DEL PEAK 47(XP22.2) MUTATED       13
  DEL PEAK 47(XP22.2) WILD-TYPE     64
D68V8, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                          23                            55
  CLUS_2                          48                            62
  CLUS_3                          33                            64
  CLUS_4                           9                            39
  CLUS_5                           8                            45
  CLUS_6                           8                            41
  CLUS_7                          13                            64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP22.2) MUTATED       45     66     30
  DEL PEAK 47(XP22.2) WILD-TYPE    144    162     63
D68V9, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                          45                           144
  CLUS_2                          66                           162
  CLUS_3                          30                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP22.2) MUTATED       17     60     34     30
  DEL PEAK 47(XP22.2) WILD-TYPE     54    138    107     70
D68V10, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                          17                            54
  CLUS_2                          60                           138
  CLUS_3                          34                           107
  CLUS_4                          30                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP22.2) MUTATED       41     55     26
  DEL PEAK 47(XP22.2) WILD-TYPE    104    143     65
D68V11, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                          41                           104
  CLUS_2                          55                           143
  CLUS_3                          26                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP22.2) MUTATED       20     75     27
  DEL PEAK 47(XP22.2) WILD-TYPE     83    173     56
D68V12, multiclass
        clus
vv       DEL PEAK 47(XP22.2) MUTATED DEL PEAK 47(XP22.2) WILD-TYPE
  CLUS_1                          20                            83
  CLUS_2                          75                           173
  CLUS_3                          27                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
