name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-05-4244-01A-01D-1105-08	263	247	16	199	6.083650e-02	exome+100bp flanks	2	35956486	...	43	183	235	1.195890e-06	5.089485e-06	6.535678e-06	-5.184709e+00	...	8	32224022	...	2.482620e-07
TCGA-05-4249-01A-01D-1105-08	390	367	23	299	5.897436e-02	exome+100bp flanks	2	35956486	...	64	263	347	1.779929e-06	7.314397e-06	9.650554e-06	-5.015448e+00	...	12	32224022	...	3.723930e-07
TCGA-05-4250-01A-01D-1105-08	422	401	21	310	4.976303e-02	exome+100bp flanks	2	35956486	...	86	276	382	2.391780e-06	7.675945e-06	1.062395e-05	-4.973714e+00	...	16	32224022	...	4.965240e-07
TCGA-05-4382-01A-01D-1931-08	2240	2159	81	1712	3.616071e-02	exome+100bp flanks	2	35956486	...	424	1570	2064	1.179203e-05	4.366389e-05	5.740272e-05	-4.241068e+00	...	51	32224022	...	1.582670e-06
TCGA-05-4384-01A-01D-1753-08	178	164	14	127	7.865169e-02	exome+100bp flanks	2	35956486	...	36	117	163	1.001210e-06	3.253933e-06	4.533257e-06	-5.343590e+00	...	5	32224022	...	1.551637e-07
TCGA-05-4389-01A-01D-1265-08	329	319	10	239	3.039514e-02	exome+100bp flanks	2	35956486	...	77	220	307	2.141477e-06	6.118507e-06	8.538098e-06	-5.068639e+00	...	10	32224022	...	3.103275e-07
TCGA-05-4390-01A-02D-1753-08	679	656	23	518	3.387334e-02	exome+100bp flanks	2	35956486	...	137	458	630	3.810161e-06	1.273762e-05	1.752118e-05	-4.756437e+00	...	29	32224022	...	8.999497e-07
TCGA-05-4395-01A-01D-1265-08	319	308	11	226	3.448276e-02	exome+100bp flanks	2	35956486	...	79	210	294	2.197100e-06	5.840393e-06	8.176550e-06	-5.087430e+00	...	4	32224022	...	1.241310e-07
TCGA-05-4396-01A-21D-1855-08	582	569	13	426	2.233677e-02	coding only	1	28827915	...	136	397	544	4.717650e-06	1.377137e-05	1.887060e-05	-4.724214e+00	...	8	28771724	...	2.780508e-07
TCGA-05-4397-01A-01D-1265-08	974	943	31	745	3.182752e-02	exome+100bp flanks	2	35956486	...	188	678	914	5.228542e-06	1.885613e-05	2.541961e-05	-4.594831e+00	...	34	32224022	...	1.055113e-06
TCGA-05-4398-01A-01D-1265-08	962	926	36	704	3.742204e-02	exome+100bp flanks	2	35956486	...	214	641	901	5.951638e-06	1.782710e-05	2.505807e-05	-4.601052e+00	...	36	32224022	...	1.117179e-06
TCGA-05-4402-01A-01D-1265-08	202	200	2	157	9.900990e-03	coding only	1	28827915	...	42	144	194	1.456921e-06	4.995158e-06	6.729588e-06	-5.172012e+00	...	6	28771724	...	2.085381e-07
TCGA-05-4403-01A-01D-1265-08	169	162	7	124	4.142012e-02	exome+100bp flanks	2	35956486	...	37	111	157	1.029022e-06	3.087065e-06	4.366389e-06	-5.359878e+00	...	7	32224022	...	2.172292e-07
TCGA-05-4405-01A-21D-1855-08	521	502	19	381	3.646833e-02	exome+100bp flanks	2	35956486	...	115	350	483	3.198310e-06	9.733988e-06	1.343290e-05	-4.871830e+00	...	13	32224022	...	4.034257e-07
TCGA-05-4410-01A-21D-1855-08	1366	1326	40	1022	2.928258e-02	coding only	1	28827915	...	294	931	1262	1.019845e-05	3.229509e-05	4.377701e-05	-4.358754e+00	...	26	28771724	...	9.036650e-07
TCGA-05-4415-01A-22D-1855-08	242	235	7	181	2.892562e-02	coding only	1	28827915	...	50	166	221	1.734430e-06	5.758308e-06	7.666181e-06	-5.115421e+00	...	5	28771724	...	1.737817e-07
TCGA-05-4417-01A-22D-1855-08	353	342	11	268	3.116147e-02	exome+100bp flanks	2	35956486	...	71	240	323	1.974609e-06	6.674735e-06	8.983080e-06	-5.046575e+00	...	10	32224022	...	3.103275e-07
TCGA-05-4418-01A-01D-1265-08	332	317	15	254	4.518072e-02	exome+100bp flanks	2	35956486	...	62	232	313	1.724306e-06	6.452243e-06	8.704966e-06	-5.060233e+00	...	10	32224022	...	3.103275e-07
TCGA-05-4420-01A-01D-1265-08	374	357	17	274	4.545455e-02	exome+100bp flanks	2	35956486	...	81	246	343	2.252723e-06	6.841603e-06	9.539308e-06	-5.020483e+00	...	12	32224022	...	3.723930e-07
TCGA-05-4422-01A-01D-1265-08	63	60	3	46	4.761905e-02	exome+100bp flanks	2	35956486	...	13	42	59	3.615481e-07	1.168079e-06	1.640872e-06	-5.784925e+00	...	4	32224022	...	1.241310e-07
TCGA-05-4424-01A-22D-1855-08	920	889	31	700	3.369565e-02	exome+100bp flanks	2	35956486	...	180	643	856	5.006051e-06	1.788273e-05	2.380655e-05	-4.623303e+00	...	25	32224022	...	7.758187e-07
TCGA-05-4425-01A-01D-1753-08	48	48	0	34	0	exome+100bp flanks	2	35956486	...	14	29	48	3.893595e-07	8.065304e-07	1.334947e-06	-5.874536e+00	...	5	32224022	...	1.551637e-07
TCGA-05-4426-01A-01D-1265-08	62	57	5	46	8.064516e-02	exome+100bp flanks	2	35956486	...	11	40	56	3.059253e-07	1.112456e-06	1.557438e-06	-5.807589e+00	...	4	32224022	...	1.241310e-07
TCGA-05-4427-01A-21D-1855-08	1244	1206	38	966	3.054662e-02	exome+100bp flanks	2	35956486	...	230	877	1147	6.396621e-06	2.439059e-05	3.189967e-05	-4.496214e+00	...	30	32224022	...	9.309825e-07
TCGA-05-4430-01A-02D-1265-08	365	351	14	278	3.835616e-02	exome+100bp flanks	2	35956486	...	71	245	327	1.974609e-06	6.813792e-06	9.094326e-06	-5.041229e+00	...	8	32224022	...	2.482620e-07
TCGA-05-4432-01A-01D-1265-08	827	804	23	614	2.781137e-02	coding only	1	28827915	...	187	562	780	6.486768e-06	1.949499e-05	2.705711e-05	-4.567719e+00	...	23	28771724	...	7.993960e-07
TCGA-05-4433-01A-22D-1855-08	57	51	6	39	1.052632e-01	exome+100bp flanks	2	35956486	...	12	34	48	3.337367e-07	9.455874e-07	1.334947e-06	-5.874536e+00	...	2	32224022	...	6.206550e-08
TCGA-05-4434-01A-01D-1265-08	65	65	0	50	0	coding only	1	28827915	...	15	41	62	5.203290e-07	1.422233e-06	2.150693e-06	-5.667422e+00	...	6	28771724	...	2.085381e-07
TCGA-05-5420-01A-01D-1625-08	129	124	5	94	3.875969e-02	exome+100bp flanks	2	35956486	...	28	82	112	7.787190e-07	2.280534e-06	3.114876e-06	-5.506559e+00	...	2	32224022	...	6.206550e-08
TCGA-05-5423-01A-01D-1625-08	182	175	7	138	3.846154e-02	exome+100bp flanks	2	35956486	...	37	128	174	1.029022e-06	3.559858e-06	4.839183e-06	-5.315228e+00	...	4	32224022	...	1.241310e-07
TCGA-05-5425-01A-02D-1625-08	744	728	16	566	2.150538e-02	coding only	1	28827915	...	156	520	701	5.411422e-06	1.803807e-05	2.431671e-05	-4.614095e+00	...	19	28771724	...	6.603706e-07
TCGA-05-5428-01A-01D-1625-08	464	447	17	341	3.663793e-02	exome+100bp flanks	2	35956486	...	101	317	436	2.808951e-06	8.816212e-06	1.212577e-05	-4.916291e+00	...	10	32224022	...	3.103275e-07
TCGA-05-5429-01A-01D-1625-08	48	45	3	35	6.250000e-02	exome+100bp flanks	2	35956486	...	8	28	40	2.224912e-07	7.787190e-07	1.112456e-06	-5.953717e+00	...	4	32224022	...	1.241310e-07
TCGA-05-5715-01A-01D-1625-08	145	141	4	107	2.758621e-02	coding only	1	28827915	...	34	96	136	1.179412e-06	3.330106e-06	4.717650e-06	-5.326274e+00	...	6	28771724	...	2.085381e-07
TCGA-17-Z000-01A-01W-0746-08	378	165	213	133	5.634921e-01	all capture (no interval list)	3	65789441	...	32	118	166	4.864002e-07	1.793601e-06	2.523201e-06	-5.598048e+00	...	5	31870181	...	1.568865e-07
TCGA-17-Z001-01A-01W-0746-08	435	239	196	184	4.505747e-01	all capture (no interval list)	3	65789441	...	52	156	228	7.904004e-07	2.371201e-06	3.465602e-06	-5.460221e+00	...	15	31870181	...	4.706594e-07
TCGA-17-Z002-01A-01W-0746-08	288	42	246	38	8.541667e-01	all capture (no interval list)	3	65789441	...	3	27	41	4.560002e-08	4.104002e-07	6.232003e-07	-6.205372e+00	...	7	31870181	...	2.196410e-07
TCGA-17-Z003-01A-01W-0746-08	547	347	200	265	3.656307e-01	all capture (no interval list)	3	65789441	...	81	249	344	1.231201e-06	3.784802e-06	5.228803e-06	-5.281598e+00	...	5	31870181	...	1.568865e-07
TCGA-17-Z004-01A-01W-0746-08	147	40	107	28	7.278912e-01	all capture (no interval list)	3	65789441	...	11	26	43	1.672001e-07	3.952002e-07	6.536003e-07	-6.184688e+00	...	1	31870181	...	3.137729e-08
TCGA-17-Z005-01A-01W-0746-08	301	123	178	87	5.913621e-01	all capture (no interval list)	3	65789441	...	34	81	125	5.168003e-07	1.231201e-06	1.900001e-06	-5.721246e+00	...	4	31870181	...	1.255092e-07
TCGA-17-Z007-01A-01W-0746-08	296	95	201	70	6.790541e-01	all capture (no interval list)	3	65789441	...	23	60	93	3.496002e-07	9.120005e-07	1.413601e-06	-5.849673e+00	...	2	31870181	...	6.275459e-08
TCGA-17-Z009-01A-01W-0746-08	311	95	216	78	6.945338e-01	all capture (no interval list)	3	65789441	...	16	69	99	2.432001e-07	1.048801e-06	1.504801e-06	-5.822521e+00	...	5	31870181	...	1.568865e-07
TCGA-17-Z010-01A-01W-0746-08	494	348	146	256	2.955466e-01	exome+100bp flanks	2	35956486	...	89	228	334	2.475214e-06	6.340998e-06	9.289006e-06	-5.032031e+00	...	10	32224022	...	3.103275e-07
TCGA-17-Z011-01A-01W-0746-08	314	150	164	117	5.222930e-01	all capture (no interval list)	3	65789441	...	31	95	138	4.712002e-07	1.444001e-06	2.097601e-06	-5.678277e+00	...	9	31870181	...	2.823956e-07
TCGA-17-Z013-01A-01W-0746-08	280	76	204	61	7.285714e-01	all capture (no interval list)	3	65789441	...	15	51	81	2.280001e-07	7.752004e-07	1.231201e-06	-5.909671e+00	...	8	31870181	...	2.510183e-07
TCGA-17-Z014-01A-01W-0746-08	640	436	204	329	3.187500e-01	all capture (no interval list)	3	65789441	...	103	300	423	1.565601e-06	4.560002e-06	6.429603e-06	-5.191816e+00	...	8	31870181	...	2.510183e-07
TCGA-17-Z015-01A-01W-0746-08	866	613	253	500	2.921478e-01	exome+100bp flanks	2	35956486	...	103	444	576	2.864574e-06	1.234826e-05	1.601936e-05	-4.795355e+00	...	18	32224022	...	5.585895e-07
TCGA-17-Z016-01A-01W-0746-08	557	346	211	274	3.788151e-01	all capture (no interval list)	3	65789441	...	69	246	338	1.048801e-06	3.739202e-06	5.137603e-06	-5.289239e+00	...	13	31870181	...	4.079048e-07
TCGA-17-Z017-01A-01W-0746-08	506	250	256	203	5.059289e-01	all capture (no interval list)	3	65789441	...	46	184	241	6.992003e-07	2.796801e-06	3.663202e-06	-5.436139e+00	...	4	31870181	...	1.255092e-07
TCGA-17-Z018-01A-01W-0746-08	493	287	206	225	4.178499e-01	all capture (no interval list)	3	65789441	...	59	199	280	8.968004e-07	3.024802e-06	4.256002e-06	-5.370998e+00	...	8	31870181	...	2.510183e-07
TCGA-17-Z019-01A-01W-0746-08	264	8	256	6	9.696970e-01	all capture (no interval list)	3	65789441	...	2	1	16	3.040002e-08	1.520001e-08	2.432001e-07	-6.614036e+00	...	4	31870181	...	1.255092e-07
TCGA-17-Z020-01A-01W-0746-08	422	163	259	125	6.137441e-01	all capture (no interval list)	3	65789441	...	34	112	155	5.168003e-07	1.702401e-06	2.356001e-06	-5.627824e+00	...	4	31870181	...	1.255092e-07
TCGA-17-Z021-01A-01W-0746-08	493	233	260	172	5.273834e-01	all capture (no interval list)	3	65789441	...	59	161	232	8.968004e-07	2.447201e-06	3.526402e-06	-5.452668e+00	...	3	31870181	...	9.413188e-08
TCGA-17-Z022-01A-01W-0746-08	1679	1406	273	1076	1.625968e-01	exome+100bp flanks	2	35956486	...	309	981	1339	8.593721e-06	2.728298e-05	3.723946e-05	-4.428997e+00	...	28	32224022	...	8.689170e-07
TCGA-17-Z023-01A-01W-0746-08	665	482	183	387	2.751880e-01	exome+100bp flanks	2	35956486	...	93	344	462	2.586460e-06	9.567120e-06	1.284886e-05	-4.891135e+00	...	19	32224022	...	5.896222e-07
TCGA-17-Z025-01A-01W-0746-08	470	296	174	231	3.702128e-01	all capture (no interval list)	3	65789441	...	62	207	289	9.424005e-07	3.146402e-06	4.392802e-06	-5.357258e+00	...	12	31870181	...	3.765275e-07
TCGA-17-Z026-01A-01W-0746-08	1463	1245	218	941	1.490089e-01	exome+100bp flanks	2	35956486	...	287	877	1188	7.981870e-06	2.439059e-05	3.303994e-05	-4.480961e+00	...	13	32224022	...	4.034257e-07
TCGA-17-Z027-01A-01W-0746-08	278	124	154	97	5.539568e-01	all capture (no interval list)	3	65789441	...	26	85	119	3.952002e-07	1.292001e-06	1.808801e-06	-5.742609e+00	...	5	31870181	...	1.568865e-07
TCGA-17-Z028-01A-01W-0746-08	766	582	184	459	2.402089e-01	exome+100bp flanks	2	35956486	...	115	411	552	3.198310e-06	1.143048e-05	1.535189e-05	-4.813838e+00	...	17	32224022	...	5.275567e-07
TCGA-17-Z030-01A-01W-0746-08	955	696	259	542	2.712042e-01	exome+100bp flanks	2	35956486	...	146	488	675	4.060464e-06	1.357196e-05	1.877269e-05	-4.726473e+00	...	21	32224022	...	6.516877e-07
TCGA-17-Z031-01A-01W-0746-08	3193	2628	565	2076	1.769496e-01	exome+100bp flanks	2	35956486	...	527	1889	2519	1.465660e-05	5.253572e-05	7.005690e-05	-4.154549e+00	...	67	32224022	...	2.079194e-06
TCGA-17-Z032-01A-01W-0746-08	630	175	455	126	7.222222e-01	all capture (no interval list)	3	65789441	...	47	110	177	7.144004e-07	1.672001e-06	2.690401e-06	-5.570183e+00	...	9	31870181	...	2.823956e-07
TCGA-17-Z033-01A-01W-0746-08	435	238	197	180	4.528736e-01	all capture (no interval list)	3	65789441	...	55	159	225	8.360004e-07	2.416801e-06	3.420002e-06	-5.465974e+00	...	5	31870181	...	1.568865e-07
TCGA-17-Z036-01A-01W-0746-08	322	93	229	74	7.111801e-01	all capture (no interval list)	3	65789441	...	19	65	98	2.888001e-07	9.880005e-07	1.489601e-06	-5.826930e+00	...	7	31870181	...	2.196410e-07
TCGA-17-Z037-01A-01W-0746-08	298	177	121	135	4.060403e-01	all capture (no interval list)	3	65789441	...	40	122	174	6.080003e-07	1.854401e-06	2.644801e-06	-5.577607e+00	...	8	31870181	...	2.510183e-07
TCGA-17-Z041-01A-01W-0746-08	593	100	493	78	8.313659e-01	all capture (no interval list)	3	65789441	...	19	55	99	2.888001e-07	8.360004e-07	1.504801e-06	-5.822521e+00	...	15	31870181	...	4.706594e-07
TCGA-17-Z042-01A-01W-0746-08	675	540	135	420	2.000000e-01	exome+100bp flanks	2	35956486	...	111	379	515	3.087065e-06	1.054052e-05	1.432287e-05	-4.843970e+00	...	13	32224022	...	4.034257e-07
TCGA-17-Z043-01A-01W-0746-08	405	246	159	183	3.925926e-01	all capture (no interval list)	3	65789441	...	60	159	236	9.120005e-07	2.416801e-06	3.587202e-06	-5.445244e+00	...	8	31870181	...	2.510183e-07
TCGA-17-Z044-01A-01W-0746-08	318	142	176	102	5.534591e-01	all capture (no interval list)	3	65789441	...	36	88	137	5.472003e-07	1.337601e-06	2.082401e-06	-5.681436e+00	...	7	31870181	...	2.196410e-07
TCGA-17-Z045-01A-01W-0746-08	918	753	165	586	1.797386e-01	exome+100bp flanks	2	35956486	...	160	527	731	4.449823e-06	1.465660e-05	2.033013e-05	-4.691860e+00	...	28	32224022	...	8.689170e-07
TCGA-17-Z047-01A-01W-0747-08	52	48	4	38	7.692308e-02	exome+100bp flanks	2	35956486	...	8	28	45	2.224912e-07	7.787190e-07	1.251513e-06	-5.902565e+00	...	6	32224022	...	1.861965e-07
TCGA-17-Z048-01A-01W-0746-08	77	68	9	54	1.168831e-01	exome+100bp flanks	2	35956486	...	14	34	63	3.893595e-07	9.455874e-07	1.752118e-06	-5.756437e+00	...	15	32224022	...	4.654912e-07
TCGA-17-Z049-01A-01W-0746-08	588	564	24	435	4.081633e-02	exome+100bp flanks	2	35956486	...	121	403	545	3.365179e-06	1.120799e-05	1.515721e-05	-4.819381e+00	...	14	32224022	...	4.344585e-07
TCGA-17-Z050-01A-01W-0747-08	277	264	13	197	4.693141e-02	exome+100bp flanks	2	35956486	...	67	174	256	1.863363e-06	4.839183e-06	7.119717e-06	-5.147537e+00	...	13	32224022	...	4.034257e-07
TCGA-17-Z051-01A-01W-0747-08	169	160	9	126	5.325444e-02	exome+100bp flanks	2	35956486	...	33	114	155	9.177760e-07	3.170499e-06	4.310766e-06	-5.365446e+00	...	6	32224022	...	1.861965e-07
TCGA-17-Z052-01A-01W-0747-08	196	192	4	148	2.040816e-02	coding only	1	28827915	...	42	138	186	1.456921e-06	4.787027e-06	6.452080e-06	-5.190300e+00	...	5	28771724	...	1.737817e-07
TCGA-17-Z053-01A-01W-0747-08	354	332	22	251	6.214689e-02	exome+100bp flanks	2	35956486	...	76	225	324	2.113666e-06	6.257564e-06	9.010892e-06	-5.045232e+00	...	20	32224022	...	6.206550e-07
TCGA-17-Z054-01A-01W-0747-08	32	28	4	23	1.250000e-01	exome+100bp flanks	2	35956486	...	5	16	27	1.390570e-07	4.449823e-07	7.509076e-07	-6.124413e+00	...	5	32224022	...	1.551637e-07
TCGA-17-Z055-01A-01W-0747-08	1117	1085	32	868	2.864816e-02	coding only	1	28827915	...	208	796	1039	7.215229e-06	2.761213e-05	3.604145e-05	-4.443198e+00	...	28	28771724	...	9.731777e-07
TCGA-17-Z056-01A-01W-0747-08	795	777	18	627	2.264151e-02	coding only	1	28827915	...	143	573	740	4.960470e-06	1.987657e-05	2.566956e-05	-4.590582e+00	...	19	28771724	...	6.603706e-07
TCGA-17-Z057-01A-01W-0747-08	539	525	14	405	2.597403e-02	coding only	1	28827915	...	113	363	505	3.919812e-06	1.259196e-05	1.751774e-05	-4.756522e+00	...	24	28771724	...	8.341523e-07
TCGA-17-Z058-01A-01W-0747-08	122	115	7	93	5.737705e-02	exome+100bp flanks	2	35956486	...	22	79	114	6.118507e-07	2.197100e-06	3.170499e-06	-5.498872e+00	...	13	32224022	...	4.034257e-07
TCGA-17-Z059-01A-01W-0747-08	204	197	7	153	3.431373e-02	exome+100bp flanks	2	35956486	...	43	142	191	1.195890e-06	3.949218e-06	5.311976e-06	-5.274744e+00	...	5	32224022	...	1.551637e-07
TCGA-17-Z060-01A-01W-0747-08	278	263	15	202	5.395683e-02	exome+100bp flanks	2	35956486	...	59	182	255	1.640872e-06	5.061674e-06	7.091905e-06	-5.149237e+00	...	11	32224022	...	3.413602e-07
TCGA-17-Z061-01A-01W-0747-08	233	222	11	163	4.721030e-02	exome+100bp flanks	2	35956486	...	57	140	216	1.585249e-06	3.893595e-06	6.007261e-06	-5.221323e+00	...	17	32224022	...	5.275567e-07
TCGA-17-Z062-01A-01W-0747-08	576	560	16	447	2.777778e-02	coding only	1	28827915	...	109	400	542	3.781057e-06	1.387544e-05	1.880122e-05	-4.725814e+00	...	26	28771724	...	9.036650e-07
TCGA-35-4122-01A-01D-1105-08	412	400	12	308	2.912621e-02	coding only	1	28827915	...	91	281	385	3.156663e-06	9.747496e-06	1.335511e-05	-4.874353e+00	...	8	28771724	...	2.780508e-07
TCGA-35-4123-01A-01D-1105-08	353	342	11	246	3.116147e-02	exome+100bp flanks	2	35956486	...	93	232	335	2.586460e-06	6.452243e-06	9.316817e-06	-5.030732e+00	...	4	32224022	...	1.241310e-07
TCGA-35-5375-01A-01D-1625-08	507	487	20	386	3.944773e-02	exome+100bp flanks	2	35956486	...	98	346	465	2.725517e-06	9.622742e-06	1.293230e-05	-4.888324e+00	...	19	32224022	...	5.896222e-07
TCGA-38-4625-01A-01D-1553-08	697	665	32	519	4.591105e-02	exome+100bp flanks	2	35956486	...	141	477	638	3.921407e-06	1.326603e-05	1.774367e-05	-4.750957e+00	...	12	32224022	...	3.723930e-07
TCGA-38-4626-01A-01D-1553-08	374	361	13	272	3.475936e-02	exome+100bp flanks	2	35956486	...	87	245	346	2.419591e-06	6.813792e-06	9.622742e-06	-5.016701e+00	...	12	32224022	...	3.723930e-07
TCGA-38-4627-01A-01D-1553-08	37	37	0	30	0	exome+100bp flanks	2	35956486	...	7	26	36	1.946798e-07	7.230962e-07	1.001210e-06	-5.999475e+00	...	3	32224022	...	9.309825e-08
TCGA-38-4628-01A-01D-1265-08	167	163	4	131	2.395210e-02	coding only	1	28827915	...	31	110	151	1.075347e-06	3.815746e-06	5.237979e-06	-5.280836e+00	...	10	28771724	...	3.475635e-07
TCGA-38-4629-01A-02D-1265-08	338	325	13	257	3.846154e-02	exome+100bp flanks	2	35956486	...	66	221	310	1.835552e-06	6.146318e-06	8.621532e-06	-5.064416e+00	...	19	32224022	...	5.896222e-07
TCGA-38-4630-01A-01D-1265-08	163	154	9	115	5.521472e-02	exome+100bp flanks	2	35956486	...	36	103	150	1.001210e-06	2.864574e-06	4.171709e-06	-5.379686e+00	...	8	32224022	...	2.482620e-07
TCGA-38-4631-01A-01D-1753-08	921	894	27	695	2.931596e-02	coding only	1	28827915	...	192	638	866	6.660211e-06	2.213133e-05	3.004033e-05	-4.522295e+00	...	24	28771724	...	8.341523e-07
TCGA-38-4632-01A-01D-1753-08	638	616	22	504	3.448276e-02	exome+100bp flanks	2	35956486	...	111	452	591	3.087065e-06	1.257075e-05	1.643653e-05	-4.784190e+00	...	21	32224022	...	6.516877e-07
TCGA-38-6178-01A-11D-1753-08	73	71	2	51	2.739726e-02	coding only	1	28827915	...	20	47	70	6.937720e-07	1.630364e-06	2.428202e-06	-5.614715e+00	...	3	28771724	...	1.042690e-07
TCGA-38-7271-01A-11D-2036-08	126	123	3	101	2.380952e-02	coding only	1	28827915	...	22	94	123	7.631492e-07	3.260728e-06	4.266698e-06	-5.369908e+00	...	6	28771724	...	2.085381e-07
TCGA-38-A44F-01A-11D-A24D-08	25	23	2	15	8.000000e-02	exome+100bp flanks	2	35956486	...	8	10	19	2.224912e-07	2.781139e-07	5.284165e-07	-6.277024e+00	...	1	32224022	...	3.103275e-08
TCGA-44-2656-01A-02D-0969-08	1112	1061	51	826	4.586331e-02	exome+100bp flanks	2	35956486	...	220	762	1028	6.118507e-06	2.119228e-05	2.859011e-05	-4.543784e+00	...	29	32224022	...	8.999497e-07
TCGA-44-2657-01A-01D-1105-08	500	491	9	371	1.800000e-02	coding only	1	28827915	...	115	342	470	3.989189e-06	1.186350e-05	1.630364e-05	-4.787715e+00	...	9	28771724	...	3.128071e-07
TCGA-44-2661-01A-01D-1105-08	72	69	3	48	4.166667e-02	exome+100bp flanks	2	35956486	...	19	44	67	5.284165e-07	1.223701e-06	1.863363e-06	-5.729702e+00	...	4	32224022	...	1.241310e-07
TCGA-44-2665-01A-01D-1040-01	64	61	3	44	4.687500e-02	exome+100bp flanks	2	35956486	...	16	37	56	4.449823e-07	1.029022e-06	1.557438e-06	-5.807589e+00	...	2	32224022	...	6.206550e-08
TCGA-44-3396-01A-01D-1553-08	271	264	7	211	2.583026e-02	coding only	1	28827915	...	48	177	244	1.665053e-06	6.139882e-06	8.464018e-06	-5.072423e+00	...	15	28771724	...	5.213452e-07
TCGA-44-3398-01A-01D-1105-08	288	279	9	215	3.125000e-02	exome+100bp flanks	2	35956486	...	62	195	269	1.724306e-06	5.423222e-06	7.481265e-06	-5.126025e+00	...	8	32224022	...	2.482620e-07
TCGA-44-3918-01A-01D-1105-08	1162	1124	38	895	3.270224e-02	exome+100bp flanks	2	35956486	...	222	819	1081	6.174129e-06	2.277753e-05	3.006412e-05	-4.521952e+00	...	30	32224022	...	9.309825e-07
TCGA-44-3919-01A-02D-1458-08	113	104	9	80	7.964602e-02	exome+100bp flanks	2	35956486	...	22	70	99	6.118507e-07	1.946798e-06	2.753328e-06	-5.560142e+00	...	6	32224022	...	1.861965e-07
TCGA-44-4112-01A-01D-1105-08	527	502	25	392	4.743833e-02	exome+100bp flanks	2	35956486	...	102	349	476	2.836762e-06	9.706177e-06	1.323822e-05	-4.878170e+00	...	22	32224022	...	6.827205e-07
TCGA-44-5643-01A-01D-1625-08	168	158	10	117	5.952381e-02	exome+100bp flanks	2	35956486	...	38	105	149	1.056833e-06	2.920196e-06	4.143898e-06	-5.382591e+00	...	5	32224022	...	1.551637e-07
TCGA-44-5644-01A-21D-2036-08	1146	1118	28	885	2.443281e-02	coding only	1	28827915	...	222	810	1068	7.700869e-06	2.809777e-05	3.704742e-05	-4.431242e+00	...	28	28771724	...	9.731777e-07
TCGA-44-5645-01A-01D-1625-08	50	48	2	40	4.000000e-02	exome+100bp flanks	2	35956486	...	8	35	46	2.224912e-07	9.733988e-07	1.279324e-06	-5.893019e+00	...	3	32224022	...	9.309825e-08
TCGA-44-6144-01A-11D-1753-08	261	255	6	192	2.298851e-02	coding only	1	28827915	...	61	181	245	2.116005e-06	6.278637e-06	8.498707e-06	-5.070647e+00	...	3	28771724	...	1.042690e-07
TCGA-44-6145-01A-11D-1753-08	389	369	20	293	5.141388e-02	exome+100bp flanks	2	35956486	...	69	266	345	1.918986e-06	7.397831e-06	9.594931e-06	-5.017958e+00	...	8	32224022	...	2.482620e-07
TCGA-44-6146-01A-11D-1753-08	51	50	1	38	1.960784e-02	coding only	1	28827915	...	12	33	48	4.162632e-07	1.144724e-06	1.665053e-06	-5.778572e+00	...	3	28771724	...	1.042690e-07
TCGA-44-6147-01A-11D-1753-08	258	245	13	174	5.038760e-02	exome+100bp flanks	2	35956486	...	67	159	233	1.863363e-06	4.422012e-06	6.480055e-06	-5.188421e+00	...	5	32224022	...	1.551637e-07
TCGA-44-6148-01A-11D-1753-08	15	12	3	8	2.000000e-01	exome+100bp flanks	2	35956486	...	3	7	12	8.343418e-08	1.946798e-07	3.337367e-07	-6.476596e+00	...	1	32224022	...	3.103275e-08
TCGA-44-6774-01A-21D-1855-08	377	366	11	281	2.917772e-02	coding only	1	28827915	...	79	252	344	2.740399e-06	8.741527e-06	1.193288e-05	-4.923255e+00	...	10	28771724	...	3.475635e-07
TCGA-44-6775-01A-11D-1855-08	100	92	8	72	8.000000e-02	exome+100bp flanks	2	35956486	...	19	65	88	5.284165e-07	1.807741e-06	2.447403e-06	-5.611295e+00	...	4	32224022	...	1.241310e-07
TCGA-44-6776-01A-11D-1855-08	256	238	18	188	7.031250e-02	exome+100bp flanks	2	35956486	...	46	168	225	1.279324e-06	4.672314e-06	6.257564e-06	-5.203595e+00	...	9	32224022	...	2.792947e-07
TCGA-44-6777-01A-11D-1855-08	481	461	20	360	4.158004e-02	exome+100bp flanks	2	35956486	...	99	319	436	2.753328e-06	8.871835e-06	1.212577e-05	-4.916291e+00	...	15	32224022	...	4.654912e-07
TCGA-44-6778-01A-11D-1855-08	477	459	18	354	3.773585e-02	exome+100bp flanks	2	35956486	...	103	321	444	2.864574e-06	8.927457e-06	1.234826e-05	-4.908394e+00	...	18	32224022	...	5.585895e-07
TCGA-44-6779-01A-11D-1855-08	138	121	17	94	1.231884e-01	exome+100bp flanks	2	35956486	...	25	85	121	6.952849e-07	2.363968e-06	3.365179e-06	-5.472992e+00	...	7	32224022	...	2.172292e-07
TCGA-44-7659-01A-11D-2063-08	191	177	14	138	7.329843e-02	exome+100bp flanks	2	35956486	...	35	123	169	9.733988e-07	3.420801e-06	4.700126e-06	-5.327891e+00	...	8	32224022	...	2.482620e-07
TCGA-44-7660-01A-11D-2063-08	467	450	17	348	3.640257e-02	exome+100bp flanks	2	35956486	...	97	317	429	2.697705e-06	8.816212e-06	1.193109e-05	-4.923320e+00	...	13	32224022	...	4.034257e-07
TCGA-44-7661-01A-11D-2063-08	344	334	10	260	2.906977e-02	coding only	1	28827915	...	72	241	325	2.497579e-06	8.359952e-06	1.127379e-05	-4.947930e+00	...	12	28771724	...	4.170762e-07
TCGA-44-7662-01A-11D-2063-08	682	668	14	535	2.052786e-02	coding only	1	28827915	...	126	500	642	4.370764e-06	1.734430e-05	2.227008e-05	-4.652278e+00	...	14	28771724	...	4.865888e-07
TCGA-44-7667-01A-31D-2063-08	561	546	15	429	2.673797e-02	coding only	1	28827915	...	111	392	519	3.850435e-06	1.359793e-05	1.800338e-05	-4.744646e+00	...	13	28771724	...	4.518325e-07
TCGA-44-7669-01A-21D-2063-08	557	533	24	424	4.308797e-02	exome+100bp flanks	2	35956486	...	105	389	522	2.920196e-06	1.081863e-05	1.451755e-05	-4.838107e+00	...	21	32224022	...	6.516877e-07
TCGA-44-7670-01A-11D-2063-08	1297	1256	41	982	3.161141e-02	exome+100bp flanks	2	35956486	...	265	881	1200	7.370019e-06	2.450184e-05	3.337367e-05	-4.476596e+00	...	45	32224022	...	1.396474e-06
TCGA-44-7671-01A-11D-2063-08	283	267	16	204	5.653710e-02	exome+100bp flanks	2	35956486	...	61	182	255	1.696495e-06	5.061674e-06	7.091905e-06	-5.149237e+00	...	11	32224022	...	3.413602e-07
TCGA-44-7672-01A-11D-2063-08	212	201	11	154	5.188679e-02	exome+100bp flanks	2	35956486	...	42	140	193	1.168079e-06	3.893595e-06	5.367599e-06	-5.270220e+00	...	11	32224022	...	3.413602e-07
TCGA-44-8117-01A-11D-2238-08	913	876	37	676	4.052574e-02	exome+100bp flanks	2	35956486	...	190	611	836	5.284165e-06	1.699276e-05	2.325033e-05	-4.633571e+00	...	31	32224022	...	9.620152e-07
TCGA-44-8119-01A-11D-2238-08	765	729	36	572	4.705882e-02	exome+100bp flanks	2	35956486	...	152	521	700	4.227332e-06	1.448974e-05	1.946798e-05	-4.710679e+00	...	21	32224022	...	6.516877e-07
TCGA-44-8120-01A-11D-2238-08	745	720	25	550	3.355705e-02	exome+100bp flanks	2	35956486	...	166	487	692	4.616691e-06	1.354415e-05	1.924548e-05	-4.715671e+00	...	30	32224022	...	9.309825e-07
TCGA-44-A479-01A-31D-A24D-08	369	356	13	281	3.523035e-02	exome+100bp flanks	2	35956486	...	71	246	336	1.974609e-06	6.841603e-06	9.344628e-06	-5.029438e+00	...	15	32224022	...	4.654912e-07
TCGA-44-A47A-01A-21D-A24D-08	271	261	10	215	3.690037e-02	exome+100bp flanks	2	35956486	...	46	199	253	1.279324e-06	5.534467e-06	7.036283e-06	-5.152657e+00	...	8	32224022	...	2.482620e-07
TCGA-44-A47B-01A-11D-A24D-08	60	58	2	44	3.333333e-02	exome+100bp flanks	2	35956486	...	14	37	57	3.893595e-07	1.029022e-06	1.585249e-06	-5.799902e+00	...	5	32224022	...	1.551637e-07
TCGA-44-A47F-01A-11D-A24D-08	116	112	4	80	3.448276e-02	exome+100bp flanks	2	35956486	...	31	74	108	8.621532e-07	2.058043e-06	3.003631e-06	-5.522353e+00	...	3	32224022	...	9.309825e-08
TCGA-44-A47G-01A-21D-A24D-08	101	97	4	79	3.960396e-02	exome+100bp flanks	2	35956486	...	18	74	95	5.006051e-07	2.058043e-06	2.642082e-06	-5.578054e+00	...	2	32224022	...	6.206550e-08
TCGA-44-A4SS-01A-11D-A24P-08	570	556	14	450	2.456140e-02	coding only	1	28827915	...	102	412	533	3.538237e-06	1.429170e-05	1.848902e-05	-4.733086e+00	...	17	28771724	...	5.908579e-07
TCGA-44-A4SU-01A-11D-A24P-08	192	181	11	135	5.729167e-02	exome+100bp flanks	2	35956486	...	45	125	177	1.251513e-06	3.476424e-06	4.922617e-06	-5.307804e+00	...	4	32224022	...	1.241310e-07
TCGA-49-4486-01A-01D-1265-08	329	317	12	235	3.647416e-02	exome+100bp flanks	2	35956486	...	81	219	308	2.252723e-06	6.090695e-06	8.565909e-06	-5.067227e+00	...	6	32224022	...	1.861965e-07
TCGA-49-4487-01A-21D-1855-08	471	461	10	356	2.123142e-02	coding only	1	28827915	...	99	325	441	3.434171e-06	1.127379e-05	1.529767e-05	-4.815375e+00	...	13	28771724	...	4.518325e-07
TCGA-49-4488-01A-01D-1753-08	348	337	11	265	3.160920e-02	exome+100bp flanks	2	35956486	...	69	247	331	1.918986e-06	6.869414e-06	9.205571e-06	-5.035949e+00	...	10	32224022	...	3.103275e-07
TCGA-49-4490-01A-21D-1855-08	85	84	1	61	1.176471e-02	coding only	1	28827915	...	23	57	82	7.978378e-07	1.977250e-06	2.844465e-06	-5.545999e+00	...	2	28771724	...	6.951269e-08
TCGA-49-4494-01A-01D-1265-08	232	226	6	174	2.586207e-02	coding only	1	28827915	...	49	163	217	1.699741e-06	5.654242e-06	7.527426e-06	-5.123353e+00	...	5	28771724	...	1.737817e-07
TCGA-49-4501-01A-01D-1265-08	102	93	9	66	8.823529e-02	exome+100bp flanks	2	35956486	...	26	60	91	7.230962e-07	1.668684e-06	2.530837e-06	-5.596736e+00	...	3	32224022	...	9.309825e-08
TCGA-49-4505-01A-01D-1931-08	276	260	16	196	5.797101e-02	exome+100bp flanks	2	35956486	...	60	176	250	1.668684e-06	4.894805e-06	6.952849e-06	-5.157837e+00	...	13	32224022	...	4.034257e-07
TCGA-49-4506-01A-01D-1265-08	167	164	3	133	1.796407e-02	coding only	1	28827915	...	31	117	157	1.075347e-06	4.058566e-06	5.446110e-06	-5.263914e+00	...	9	28771724	...	3.128071e-07
TCGA-49-4507-01A-01D-1265-08	261	249	12	193	4.597701e-02	exome+100bp flanks	2	35956486	...	54	176	240	1.501815e-06	4.894805e-06	6.674735e-06	-5.175566e+00	...	7	32224022	...	2.172292e-07
TCGA-49-4510-01A-01D-1265-08	63	59	4	45	6.349206e-02	exome+100bp flanks	2	35956486	...	13	43	58	3.615481e-07	1.195890e-06	1.613061e-06	-5.792349e+00	...	1	32224022	...	3.103275e-08
TCGA-49-4512-01A-21D-1855-08	70	64	6	49	8.571429e-02	exome+100bp flanks	2	35956486	...	15	44	62	4.171709e-07	1.223701e-06	1.724306e-06	-5.763386e+00	...	3	32224022	...	9.309825e-08
TCGA-49-4514-01A-21D-1855-08	392	385	7	290	1.785714e-02	coding only	1	28827915	...	95	262	373	3.295417e-06	9.088413e-06	1.293885e-05	-4.888104e+00	...	11	28771724	...	3.823198e-07
TCGA-49-6742-01A-11D-1855-08	351	339	12	251	3.418803e-02	exome+100bp flanks	2	35956486	...	81	234	328	2.252723e-06	6.507866e-06	9.122137e-06	-5.039903e+00	...	7	32224022	...	2.172292e-07
TCGA-49-6743-01A-11D-1855-08	924	901	23	674	2.489177e-02	coding only	1	28827915	...	223	614	868	7.735558e-06	2.129880e-05	3.010970e-05	-4.521294e+00	...	25	28771724	...	8.689087e-07
TCGA-49-6744-01A-11D-1855-08	316	308	8	245	2.531646e-02	coding only	1	28827915	...	61	225	294	2.116005e-06	7.804935e-06	1.019845e-05	-4.991466e+00	...	7	28771724	...	2.432944e-07
TCGA-49-6745-01A-11D-1855-08	178	175	3	137	1.685393e-02	coding only	1	28827915	...	35	126	164	1.214101e-06	4.370764e-06	5.688930e-06	-5.244969e+00	...	2	28771724	...	6.951269e-08
TCGA-49-6761-01A-31D-1945-08	228	217	11	162	4.824561e-02	exome+100bp flanks	2	35956486	...	54	150	212	1.501815e-06	4.171709e-06	5.896016e-06	-5.229441e+00	...	4	32224022	...	1.241310e-07
TCGA-49-6767-01A-11D-1855-08	589	566	23	421	3.904924e-02	exome+100bp flanks	2	35956486	...	140	390	551	3.893595e-06	1.084644e-05	1.532408e-05	-4.814626e+00	...	12	32224022	...	3.723930e-07
TCGA-50-5044-01A-21D-1855-08	188	176	12	125	6.382979e-02	exome+100bp flanks	2	35956486	...	48	114	168	1.334947e-06	3.170499e-06	4.672314e-06	-5.330468e+00	...	4	32224022	...	1.241310e-07
TCGA-50-5045-01A-01D-1625-08	387	378	9	308	2.325581e-02	coding only	1	28827915	...	68	283	363	2.358825e-06	9.816874e-06	1.259196e-05	-4.899907e+00	...	9	28771724	...	3.128071e-07
TCGA-50-5049-01A-01D-1625-08	1065	1043	22	815	2.065728e-02	coding only	1	28827915	...	218	754	1007	7.562115e-06	2.615520e-05	3.493142e-05	-4.456784e+00	...	27	28771724	...	9.384213e-07
TCGA-50-5051-01A-21D-1855-08	151	147	4	105	2.649007e-02	coding only	1	28827915	...	39	94	140	1.352855e-06	3.260728e-06	4.856404e-06	-5.313685e+00	...	7	28771724	...	2.432944e-07
TCGA-50-5055-01A-01D-1625-08	29	28	1	26	3.448276e-02	exome+100bp flanks	2	35956486	...	2	23	25	5.562279e-08	6.396621e-07	6.952849e-07	-6.157837e+00	...	0	32224022	...	0
TCGA-50-5066-01A-01D-1625-08	356	335	21	272	5.898876e-02	exome+100bp flanks	2	35956486	...	60	260	335	1.668684e-06	7.230962e-06	9.316817e-06	-5.030732e+00	...	8	32224022	...	2.482620e-07
TCGA-50-5068-01A-01D-1625-08	123	121	2	94	1.626016e-02	coding only	1	28827915	...	27	82	117	9.365922e-07	2.844465e-06	4.058566e-06	-5.391627e+00	...	7	28771724	...	2.432944e-07
TCGA-50-5072-01A-21D-1855-08	211	204	7	164	3.317536e-02	exome+100bp flanks	2	35956486	...	38	145	193	1.056833e-06	4.032652e-06	5.367599e-06	-5.270220e+00	...	9	32224022	...	2.792947e-07
TCGA-50-5930-01A-11D-1753-08	1316	1260	56	980	4.255319e-02	exome+100bp flanks	2	35956486	...	266	891	1201	7.397831e-06	2.477995e-05	3.340148e-05	-4.476234e+00	...	25	32224022	...	7.758187e-07
TCGA-50-5931-01A-11D-1753-08	376	361	15	287	3.989362e-02	exome+100bp flanks	2	35956486	...	70	264	348	1.946798e-06	7.342208e-06	9.678365e-06	-5.014198e+00	...	10	32224022	...	3.103275e-07
TCGA-50-5932-01A-11D-1753-08	97	86	11	71	1.134021e-01	exome+100bp flanks	2	35956486	...	14	65	83	3.893595e-07	1.807741e-06	2.308346e-06	-5.636699e+00	...	4	32224022	...	1.241310e-07
TCGA-50-5933-01A-11D-1753-08	640	622	18	483	2.812500e-02	coding only	1	28827915	...	135	440	597	4.682961e-06	1.526298e-05	2.070909e-05	-4.683839e+00	...	18	28771724	...	6.256142e-07
TCGA-50-5935-01A-11D-1753-08	133	131	2	106	1.503759e-02	coding only	1	28827915	...	25	102	130	8.672150e-07	3.538237e-06	4.509518e-06	-5.345870e+00	...	1	28771724	...	3.475635e-08
TCGA-50-5936-01A-11D-1625-08	158	153	5	117	3.164557e-02	exome+100bp flanks	2	35956486	...	35	105	145	9.733988e-07	2.920196e-06	4.032652e-06	-5.394409e+00	...	5	32224022	...	1.551637e-07
TCGA-50-5939-01A-11D-1625-08	110	102	8	81	7.272727e-02	exome+100bp flanks	2	35956486	...	21	75	101	5.840393e-07	2.085855e-06	2.808951e-06	-5.551456e+00	...	4	32224022	...	1.241310e-07
TCGA-50-5941-01A-11D-1753-08	482	472	10	362	2.074689e-02	coding only	1	28827915	...	107	320	454	3.711680e-06	1.110035e-05	1.574862e-05	-4.802757e+00	...	24	28771724	...	8.341523e-07
TCGA-50-5942-01A-21D-1753-08	92	86	6	68	6.521739e-02	exome+100bp flanks	2	35956486	...	16	62	83	4.449823e-07	1.724306e-06	2.308346e-06	-5.636699e+00	...	3	32224022	...	9.309825e-08
TCGA-50-5944-01A-11D-1753-08	82	78	4	57	4.878049e-02	exome+100bp flanks	2	35956486	...	18	50	72	5.006051e-07	1.390570e-06	2.002420e-06	-5.698445e+00	...	2	32224022	...	6.206550e-08
TCGA-50-5946-01A-11D-1753-08	793	773	20	588	2.522068e-02	coding only	1	28827915	...	180	538	748	6.243948e-06	1.866247e-05	2.594707e-05	-4.585912e+00	...	23	28771724	...	7.993960e-07
TCGA-50-6590-01A-12D-1855-08	1122	1084	38	850	3.386809e-02	exome+100bp flanks	2	35956486	...	221	781	1033	6.146318e-06	2.172070e-05	2.872917e-05	-4.541677e+00	...	23	32224022	...	7.137532e-07
TCGA-50-6591-01A-11D-1753-08	74	70	4	56	5.405405e-02	exome+100bp flanks	2	35956486	...	14	49	69	3.893595e-07	1.362758e-06	1.918986e-06	-5.716928e+00	...	5	32224022	...	1.551637e-07
TCGA-50-6592-01A-11D-1753-08	347	337	10	268	2.881844e-02	coding only	1	28827915	...	64	245	320	2.220070e-06	8.498707e-06	1.110035e-05	-4.954663e+00	...	8	28771724	...	2.780508e-07
TCGA-50-6593-01A-11D-1753-08	379	369	10	275	2.638522e-02	coding only	1	28827915	...	89	254	351	3.087285e-06	8.810904e-06	1.217570e-05	-4.914506e+00	...	7	28771724	...	2.432944e-07
TCGA-50-6594-01A-11D-1753-08	608	588	20	476	3.289474e-02	exome+100bp flanks	2	35956486	...	108	429	564	3.003631e-06	1.193109e-05	1.568563e-05	-4.804498e+00	...	22	32224022	...	6.827205e-07
TCGA-50-6595-01A-12D-1855-08	127	126	1	102	7.874016e-03	coding only	1	28827915	...	20	91	114	6.937720e-07	3.156663e-06	3.954500e-06	-5.402908e+00	...	2	28771724	...	6.951269e-08
TCGA-50-6597-01A-11D-1855-08	81	76	5	57	6.172840e-02	exome+100bp flanks	2	35956486	...	19	51	72	5.284165e-07	1.418381e-06	2.002420e-06	-5.698445e+00	...	1	32224022	...	3.103275e-08
TCGA-50-6673-01A-11D-1945-08	70	68	2	58	2.857143e-02	coding only	1	28827915	...	10	50	68	3.468860e-07	1.734430e-06	2.358825e-06	-5.627304e+00	...	8	28771724	...	2.780508e-07
TCGA-50-7109-01A-11D-2036-08	300	288	12	228	4.000000e-02	exome+100bp flanks	2	35956486	...	57	210	281	1.585249e-06	5.840393e-06	7.815002e-06	-5.107071e+00	...	8	32224022	...	2.482620e-07
TCGA-50-8457-01A-11D-2323-08	69	67	2	52	2.898551e-02	coding only	1	28827915	...	14	45	61	4.856404e-07	1.560987e-06	2.116005e-06	-5.674483e+00	...	2	28771724	...	6.951269e-08
TCGA-50-8459-01A-11D-2323-08	114	107	7	79	6.140351e-02	exome+100bp flanks	2	35956486	...	28	70	104	7.787190e-07	1.946798e-06	2.892385e-06	-5.538744e+00	...	5	32224022	...	1.551637e-07
TCGA-50-8460-01A-11D-2323-08	37	33	4	29	1.081081e-01	exome+100bp flanks	2	35956486	...	4	25	33	1.112456e-07	6.952849e-07	9.177760e-07	-6.037263e+00	...	3	32224022	...	9.309825e-08
TCGA-53-7624-01A-11D-2063-08	946	916	30	703	3.171247e-02	exome+100bp flanks	2	35956486	...	203	634	865	5.645713e-06	1.763242e-05	2.405686e-05	-4.618761e+00	...	25	32224022	...	7.758187e-07
TCGA-53-7626-01A-12D-2063-08	424	412	12	322	2.830189e-02	coding only	1	28827915	...	88	290	392	3.052597e-06	1.005969e-05	1.359793e-05	-4.866527e+00	...	9	28771724	...	3.128071e-07
TCGA-53-7813-01A-11D-2167-08	193	183	10	150	5.181347e-02	exome+100bp flanks	2	35956486	...	31	126	170	8.621532e-07	3.504236e-06	4.727937e-06	-5.325328e+00	...	11	32224022	...	3.413602e-07
TCGA-53-A4EZ-01A-12D-A24P-08	624	593	31	446	4.967949e-02	exome+100bp flanks	2	35956486	...	138	411	577	3.837972e-06	1.143048e-05	1.604717e-05	-4.794601e+00	...	18	32224022	...	5.585895e-07
TCGA-55-1592-01A-01D-0969-08	701	676	25	530	3.566334e-02	exome+100bp flanks	2	35956486	...	138	482	639	3.837972e-06	1.340509e-05	1.777148e-05	-4.750276e+00	...	18	32224022	...	5.585895e-07
TCGA-55-1595-01A-01D-0969-08	402	378	24	290	5.970149e-02	exome+100bp flanks	2	35956486	...	86	260	361	2.391780e-06	7.230962e-06	1.003991e-05	-4.998270e+00	...	10	32224022	...	3.103275e-07
TCGA-55-5899-01A-11D-1625-08	528	511	17	385	3.219697e-02	exome+100bp flanks	2	35956486	...	120	355	494	3.337367e-06	9.873045e-06	1.373883e-05	-4.862050e+00	...	11	32224022	...	3.413602e-07
TCGA-55-6543-01A-11D-1753-08	27	25	2	20	7.407407e-02	exome+100bp flanks	2	35956486	...	5	16	23	1.390570e-07	4.449823e-07	6.396621e-07	-6.194049e+00	...	2	32224022	...	6.206550e-08
TCGA-55-6642-01A-11D-1855-08	155	148	7	115	4.516129e-02	exome+100bp flanks	2	35956486	...	31	101	141	8.621532e-07	2.808951e-06	3.921407e-06	-5.406558e+00	...	6	32224022	...	1.861965e-07
TCGA-55-6712-01A-11D-1855-08	208	199	9	138	4.326923e-02	exome+100bp flanks	2	35956486	...	57	123	192	1.585249e-06	3.420801e-06	5.339788e-06	-5.272476e+00	...	8	32224022	...	2.482620e-07
TCGA-55-6968-01A-11D-1945-08	666	646	20	487	3.003003e-02	exome+100bp flanks	2	35956486	...	148	447	616	4.116086e-06	1.243169e-05	1.713182e-05	-4.766197e+00	...	14	32224022	...	4.344585e-07
TCGA-55-6969-01A-11D-1945-08	547	532	15	400	2.742230e-02	coding only	1	28827915	...	127	356	501	4.405452e-06	1.234914e-05	1.737899e-05	-4.759976e+00	...	15	28771724	...	5.213452e-07
TCGA-55-6970-01A-11D-1945-08	207	200	7	165	3.381643e-02	exome+100bp flanks	2	35956486	...	32	155	195	8.899646e-07	4.310766e-06	5.423222e-06	-5.265743e+00	...	6	32224022	...	1.861965e-07
TCGA-55-6971-01A-11D-1945-08	109	104	5	81	4.587156e-02	exome+100bp flanks	2	35956486	...	22	73	100	6.118507e-07	2.030232e-06	2.781139e-06	-5.555777e+00	...	4	32224022	...	1.241310e-07
TCGA-55-6972-01A-11D-1945-08	334	320	14	239	4.191617e-02	exome+100bp flanks	2	35956486	...	77	206	296	2.141477e-06	5.729147e-06	8.232173e-06	-5.084486e+00	...	10	32224022	...	3.103275e-07
TCGA-55-6975-01A-11D-1945-08	101	95	6	77	5.940594e-02	exome+100bp flanks	2	35956486	...	18	68	92	5.006051e-07	1.891175e-06	2.558648e-06	-5.591989e+00	...	5	32224022	...	1.551637e-07
TCGA-55-6978-01A-11D-1945-08	49	43	6	35	1.224490e-01	exome+100bp flanks	2	35956486	...	6	31	42	1.668684e-07	8.621532e-07	1.168079e-06	-5.932528e+00	...	3	32224022	...	9.309825e-08
TCGA-55-6979-01A-11D-1945-08	187	180	7	148	3.743316e-02	exome+100bp flanks	2	35956486	...	30	129	165	8.343418e-07	3.587670e-06	4.588880e-06	-5.338293e+00	...	5	32224022	...	1.551637e-07
TCGA-55-6980-01A-11D-1945-08	23	21	2	18	8.695652e-02	exome+100bp flanks	2	35956486	...	3	16	21	8.343418e-08	4.449823e-07	5.840393e-07	-6.233558e+00	...	1	32224022	...	3.103275e-08
TCGA-55-6981-01A-11D-1945-08	75	70	5	59	6.666667e-02	exome+100bp flanks	2	35956486	...	11	56	70	3.059253e-07	1.557438e-06	1.946798e-06	-5.710679e+00	...	3	32224022	...	9.309825e-08
TCGA-55-6982-01A-11D-1945-08	292	286	6	213	2.054795e-02	coding only	1	28827915	...	68	197	276	2.358825e-06	6.833654e-06	9.574053e-06	-5.018904e+00	...	11	28771724	...	3.823198e-07
TCGA-55-6983-01A-11D-1945-08	140	136	4	110	2.857143e-02	coding only	1	28827915	...	24	101	132	8.325264e-07	3.503549e-06	4.578895e-06	-5.339239e+00	...	6	28771724	...	2.085381e-07
TCGA-55-6984-01A-11D-1945-08	29	25	4	19	1.379310e-01	exome+100bp flanks	2	35956486	...	6	14	26	1.668684e-07	3.893595e-07	7.230962e-07	-6.140804e+00	...	4	32224022	...	1.241310e-07
TCGA-55-6985-01A-11D-1945-08	546	523	23	405	4.212454e-02	exome+100bp flanks	2	35956486	...	113	367	504	3.142688e-06	1.020678e-05	1.401694e-05	-4.853347e+00	...	15	32224022	...	4.654912e-07
TCGA-55-6986-01A-11D-1945-08	28	27	1	20	3.571429e-02	exome+100bp flanks	2	35956486	...	6	16	25	1.668684e-07	4.449823e-07	6.952849e-07	-6.157837e+00	...	3	32224022	...	9.309825e-08
TCGA-55-6987-01A-11D-1945-08	261	255	6	196	2.298851e-02	coding only	1	28827915	...	54	187	244	1.873184e-06	6.486768e-06	8.464018e-06	-5.072423e+00	...	2	28771724	...	6.951269e-08
TCGA-55-7227-01A-11D-2036-08	199	190	9	146	4.522613e-02	exome+100bp flanks	2	35956486	...	43	137	185	1.195890e-06	3.810161e-06	5.145108e-06	-5.288606e+00	...	4	32224022	...	1.241310e-07
TCGA-55-7281-01A-11D-2036-08	544	530	14	422	2.573529e-02	coding only	1	28827915	...	103	382	509	3.572926e-06	1.325105e-05	1.765650e-05	-4.753095e+00	...	20	28771724	...	6.951269e-07
TCGA-55-7283-01A-11D-2036-08	285	272	13	212	4.561404e-02	exome+100bp flanks	2	35956486	...	58	194	262	1.613061e-06	5.395410e-06	7.286585e-06	-5.137476e+00	...	6	32224022	...	1.861965e-07
TCGA-55-7284-01B-11D-2238-08	74	72	2	52	2.702703e-02	coding only	1	28827915	...	20	47	68	6.937720e-07	1.630364e-06	2.358825e-06	-5.627304e+00	...	1	28771724	...	3.475635e-08
TCGA-55-7570-01A-11D-2036-08	456	436	20	346	4.385965e-02	exome+100bp flanks	2	35956486	...	87	309	418	2.419591e-06	8.593721e-06	1.162516e-05	-4.934601e+00	...	16	32224022	...	4.965240e-07
TCGA-55-7573-01A-11D-2036-08	63	62	1	51	1.587302e-02	coding only	1	28827915	...	10	46	61	3.468860e-07	1.595676e-06	2.116005e-06	-5.674483e+00	...	5	28771724	...	1.737817e-07
TCGA-55-7574-01A-11D-2036-08	323	316	7	252	2.167183e-02	coding only	1	28827915	...	62	238	308	2.150693e-06	8.255887e-06	1.068409e-05	-4.971263e+00	...	6	28771724	...	2.085381e-07
TCGA-55-7576-01A-11D-2063-08	492	471	21	363	4.268293e-02	exome+100bp flanks	2	35956486	...	104	334	451	2.892385e-06	9.289006e-06	1.254294e-05	-4.901601e+00	...	10	32224022	...	3.103275e-07
TCGA-55-7724-01A-11D-2167-08	311	299	12	238	3.858521e-02	exome+100bp flanks	2	35956486	...	56	217	282	1.557438e-06	6.035073e-06	7.842813e-06	-5.105528e+00	...	8	32224022	...	2.482620e-07
TCGA-55-7725-01A-11D-2167-08	164	160	4	121	2.439024e-02	coding only	1	28827915	...	38	106	154	1.318167e-06	3.676992e-06	5.342044e-06	-5.272293e+00	...	10	28771724	...	3.475635e-07
TCGA-55-7726-01A-11D-2167-08	140	135	5	108	3.571429e-02	exome+100bp flanks	2	35956486	...	27	100	133	7.509076e-07	2.781139e-06	3.698915e-06	-5.431926e+00	...	4	32224022	...	1.241310e-07
TCGA-55-7727-01A-11D-2167-08	320	304	16	222	5.000000e-02	exome+100bp flanks	2	35956486	...	80	208	298	2.224912e-06	5.784770e-06	8.287795e-06	-5.081561e+00	...	2	32224022	...	6.206550e-08
TCGA-55-7728-01A-11D-2184-08	127	124	3	99	2.362205e-02	coding only	1	28827915	...	24	88	120	8.325264e-07	3.052597e-06	4.162632e-06	-5.380632e+00	...	3	28771724	...	1.042690e-07
TCGA-55-7815-01A-11D-2167-08	178	171	7	129	3.932584e-02	exome+100bp flanks	2	35956486	...	41	120	168	1.140267e-06	3.337367e-06	4.672314e-06	-5.330468e+00	...	5	32224022	...	1.551637e-07
TCGA-55-7816-01A-11D-2167-08	15	12	3	11	2.000000e-01	exome+100bp flanks	2	35956486	...	1	5	11	2.781139e-08	1.390570e-07	3.059253e-07	-6.514385e+00	...	5	32224022	...	1.551637e-07
TCGA-55-7903-01A-11D-2167-08	197	191	6	148	3.045685e-02	exome+100bp flanks	2	35956486	...	41	127	180	1.140267e-06	3.532047e-06	5.006051e-06	-5.300505e+00	...	9	32224022	...	2.792947e-07
TCGA-55-7907-01A-11D-2167-08	1381	1328	53	1038	3.837799e-02	exome+100bp flanks	2	35956486	...	277	956	1269	7.703756e-06	2.658769e-05	3.529266e-05	-4.452316e+00	...	28	32224022	...	8.689170e-07
TCGA-55-7910-01A-11D-2167-08	371	359	12	293	3.234501e-02	exome+100bp flanks	2	35956486	...	63	268	348	1.752118e-06	7.453454e-06	9.678365e-06	-5.014198e+00	...	12	32224022	...	3.723930e-07
TCGA-55-7911-01A-11D-2167-08	288	276	12	212	4.166667e-02	exome+100bp flanks	2	35956486	...	61	199	271	1.696495e-06	5.534467e-06	7.536888e-06	-5.122808e+00	...	6	32224022	...	1.861965e-07
TCGA-55-7913-01B-11D-2238-08	426	407	19	319	4.460094e-02	exome+100bp flanks	2	35956486	...	86	294	392	2.391780e-06	8.176550e-06	1.090207e-05	-4.962491e+00	...	10	32224022	...	3.103275e-07
TCGA-55-7914-01A-11D-2167-08	221	207	14	159	6.334842e-02	exome+100bp flanks	2	35956486	...	43	142	195	1.195890e-06	3.949218e-06	5.423222e-06	-5.265743e+00	...	6	32224022	...	1.861965e-07
TCGA-55-7994-01A-11D-2184-08	1841	1777	64	1384	3.476372e-02	exome+100bp flanks	2	35956486	...	376	1264	1713	1.045708e-05	3.515360e-05	4.764092e-05	-4.322020e+00	...	59	32224022	...	1.830932e-06
TCGA-55-7995-01A-11D-2184-08	805	776	29	608	3.602484e-02	exome+100bp flanks	2	35956486	...	162	547	737	4.505446e-06	1.521283e-05	2.049700e-05	-4.688310e+00	...	25	32224022	...	7.758187e-07
TCGA-55-8085-01A-11D-2238-08	318	310	8	229	2.515723e-02	coding only	1	28827915	...	75	207	292	2.601645e-06	7.180540e-06	1.012907e-05	-4.994430e+00	...	6	28771724	...	2.085381e-07
TCGA-55-8087-01A-11D-2238-08	53	45	8	33	1.509434e-01	exome+100bp flanks	2	35956486	...	12	28	45	3.337367e-07	7.787190e-07	1.251513e-06	-5.902565e+00	...	3	32224022	...	9.309825e-08
TCGA-55-8089-01A-11D-2238-08	1534	1487	47	1135	3.063885e-02	exome+100bp flanks	2	35956486	...	336	1057	1427	9.344628e-06	2.939664e-05	3.968686e-05	-4.401353e+00	...	25	32224022	...	7.758187e-07
TCGA-55-8090-01A-11D-2238-08	116	107	9	80	7.758621e-02	exome+100bp flanks	2	35956486	...	25	70	100	6.952849e-07	1.946798e-06	2.781139e-06	-5.555777e+00	...	5	32224022	...	1.551637e-07
TCGA-55-8091-01A-11D-2238-08	41	41	0	36	0	exome+100bp flanks	2	35956486	...	4	29	39	1.112456e-07	8.065304e-07	1.084644e-06	-5.964713e+00	...	5	32224022	...	1.551637e-07
TCGA-55-8092-01A-11D-2238-08	693	662	31	488	4.473304e-02	exome+100bp flanks	2	35956486	...	162	450	635	4.505446e-06	1.251513e-05	1.766024e-05	-4.753004e+00	...	17	32224022	...	5.275567e-07
TCGA-55-8094-01A-11D-2238-08	562	538	24	410	4.270463e-02	exome+100bp flanks	2	35956486	...	124	380	528	3.448613e-06	1.056833e-05	1.468442e-05	-4.833143e+00	...	17	32224022	...	5.275567e-07
TCGA-55-8096-01A-11D-2238-08	187	178	9	138	4.812834e-02	exome+100bp flanks	2	35956486	...	38	119	163	1.056833e-06	3.309556e-06	4.533257e-06	-5.343590e+00	...	5	32224022	...	1.551637e-07
TCGA-55-8097-01A-11D-2238-08	161	151	10	118	6.211180e-02	exome+100bp flanks	2	35956486	...	31	104	146	8.621532e-07	2.892385e-06	4.060464e-06	-5.391424e+00	...	8	32224022	...	2.482620e-07
TCGA-55-8203-01A-11D-2238-08	511	491	20	378	3.913894e-02	exome+100bp flanks	2	35956486	...	110	350	474	3.059253e-06	9.733988e-06	1.318260e-05	-4.879999e+00	...	10	32224022	...	3.103275e-07
TCGA-55-8204-01A-11D-2238-08	283	262	21	200	7.420495e-02	exome+100bp flanks	2	35956486	...	59	180	251	1.640872e-06	5.006051e-06	6.980660e-06	-5.156104e+00	...	9	32224022	...	2.792947e-07
TCGA-55-8205-01A-11D-2238-08	631	614	17	471	2.694136e-02	coding only	1	28827915	...	136	425	588	4.717650e-06	1.474265e-05	2.039690e-05	-4.690436e+00	...	23	28771724	...	7.993960e-07
TCGA-55-8206-01A-11D-2238-08	46	42	4	31	8.695652e-02	exome+100bp flanks	2	35956486	...	11	22	37	3.059253e-07	6.118507e-07	1.029022e-06	-5.987576e+00	...	4	32224022	...	1.241310e-07
TCGA-55-8207-01A-11D-2238-08	386	373	13	288	3.367876e-02	exome+100bp flanks	2	35956486	...	81	260	360	2.252723e-06	7.230962e-06	1.001210e-05	-4.999475e+00	...	15	32224022	...	4.654912e-07
TCGA-55-8208-01A-11D-2238-08	555	544	11	409	1.981982e-02	coding only	1	28827915	...	131	372	517	4.544207e-06	1.290416e-05	1.793401e-05	-4.746323e+00	...	11	28771724	...	3.823198e-07
TCGA-55-8299-01A-11D-2284-08	394	375	19	296	4.822335e-02	exome+100bp flanks	2	35956486	...	75	274	365	2.085855e-06	7.620322e-06	1.015116e-05	-4.993484e+00	...	13	32224022	...	4.034257e-07
TCGA-55-8301-01A-11D-2284-08	414	404	10	305	2.415459e-02	coding only	1	28827915	...	91	263	384	3.156663e-06	9.123102e-06	1.332042e-05	-4.875482e+00	...	29	28771724	...	1.007934e-06
TCGA-55-8302-01A-11D-2323-08	824	793	31	625	3.762136e-02	exome+100bp flanks	2	35956486	...	162	569	769	4.505446e-06	1.582468e-05	2.138696e-05	-4.669851e+00	...	29	32224022	...	8.999497e-07
TCGA-55-8505-01A-11D-2393-08	53	47	6	33	1.132075e-01	exome+100bp flanks	2	35956486	...	13	31	45	3.615481e-07	8.621532e-07	1.251513e-06	-5.902565e+00	...	1	32224022	...	3.103275e-08
TCGA-55-8506-01A-11D-2393-08	2171	2118	53	1628	2.441271e-02	coding only	1	28827915	...	468	1380	2040	1.623426e-05	4.787027e-05	7.076474e-05	-4.150183e+00	...	160	28771724	...	5.561015e-06
TCGA-55-8507-01A-11D-2393-08	1157	1107	50	867	4.321521e-02	exome+100bp flanks	2	35956486	...	231	802	1070	6.424432e-06	2.230474e-05	2.975819e-05	-4.526393e+00	...	29	32224022	...	8.999497e-07
TCGA-55-8508-01A-11D-2393-08	221	210	11	162	4.977376e-02	exome+100bp flanks	2	35956486	...	46	146	204	1.279324e-06	4.060464e-06	5.673524e-06	-5.246147e+00	...	10	32224022	...	3.103275e-07
TCGA-55-8510-01A-11D-2393-08	388	369	19	277	4.896907e-02	exome+100bp flanks	2	35956486	...	85	247	350	2.363968e-06	6.869414e-06	9.733988e-06	-5.011709e+00	...	13	32224022	...	4.034257e-07
TCGA-55-8511-01A-11D-2393-08	703	682	21	522	2.987198e-02	coding only	1	28827915	...	153	471	654	5.307356e-06	1.633833e-05	2.268634e-05	-4.644235e+00	...	21	28771724	...	7.298833e-07
TCGA-55-8512-01A-11D-2393-08	53	47	6	35	1.132075e-01	exome+100bp flanks	2	35956486	...	11	32	46	3.059253e-07	8.899646e-07	1.279324e-06	-5.893019e+00	...	3	32224022	...	9.309825e-08
TCGA-55-8513-01A-11D-2393-08	14	12	2	11	1.428571e-01	exome+100bp flanks	2	35956486	...	1	10	12	2.781139e-08	2.781139e-07	3.337367e-07	-6.476596e+00	...	0	32224022	...	0
TCGA-55-8514-01A-11D-2393-08	348	331	17	257	4.885057e-02	exome+100bp flanks	2	35956486	...	71	224	314	1.974609e-06	6.229752e-06	8.732778e-06	-5.058848e+00	...	15	32224022	...	4.654912e-07
TCGA-55-8614-01A-11D-2393-08	292	279	13	206	4.452055e-02	exome+100bp flanks	2	35956486	...	72	184	271	2.002420e-06	5.117297e-06	7.536888e-06	-5.122808e+00	...	13	32224022	...	4.034257e-07
TCGA-55-8615-01A-11D-2393-08	154	152	2	103	1.298701e-02	coding only	1	28827915	...	48	94	146	1.665053e-06	3.260728e-06	5.064536e-06	-5.295460e+00	...	4	28771724	...	1.390254e-07
TCGA-55-8616-01A-11D-2393-08	585	569	16	444	2.735043e-02	coding only	1	28827915	...	122	399	548	4.232009e-06	1.384075e-05	1.900935e-05	-4.721033e+00	...	17	28771724	...	5.908579e-07
TCGA-55-8619-01A-11D-2393-08	34	31	3	26	8.823529e-02	exome+100bp flanks	2	35956486	...	5	22	30	1.390570e-07	6.118507e-07	8.343418e-07	-6.078656e+00	...	3	32224022	...	9.309825e-08
TCGA-55-8620-01A-11D-2393-08	607	575	32	443	5.271829e-02	exome+100bp flanks	2	35956486	...	127	403	561	3.532047e-06	1.120799e-05	1.560219e-05	-4.806814e+00	...	23	32224022	...	7.137532e-07
TCGA-55-8621-01A-11D-2393-08	143	138	5	108	3.496503e-02	exome+100bp flanks	2	35956486	...	28	101	133	7.787190e-07	2.808951e-06	3.698915e-06	-5.431926e+00	...	4	32224022	...	1.241310e-07
TCGA-55-A48X-01A-11D-A24D-08	481	463	18	374	3.742204e-02	exome+100bp flanks	2	35956486	...	81	346	440	2.252723e-06	9.622742e-06	1.223701e-05	-4.912325e+00	...	8	32224022	...	2.482620e-07
TCGA-55-A48Y-01A-11D-A24D-08	401	398	3	301	7.481297e-03	coding only	1	28827915	...	97	279	383	3.364794e-06	9.678119e-06	1.328573e-05	-4.876614e+00	...	5	28771724	...	1.737817e-07
TCGA-55-A48Z-01A-12D-A24P-08	64	62	2	46	3.125000e-02	exome+100bp flanks	2	35956486	...	16	42	60	4.449823e-07	1.168079e-06	1.668684e-06	-5.777626e+00	...	1	32224022	...	3.103275e-08
TCGA-55-A490-01A-11D-A24D-08	1580	1519	61	1185	3.860759e-02	exome+100bp flanks	2	35956486	...	316	1070	1440	8.788401e-06	2.975819e-05	4.004841e-05	-4.397415e+00	...	38	32224022	...	1.179244e-06
TCGA-55-A491-01A-11D-A24D-08	450	434	16	334	3.555556e-02	exome+100bp flanks	2	35956486	...	97	300	410	2.697705e-06	8.343418e-06	1.140267e-05	-4.942993e+00	...	11	32224022	...	3.413602e-07
TCGA-55-A492-01A-11D-A24D-08	367	355	12	269	3.269755e-02	exome+100bp flanks	2	35956486	...	78	237	336	2.169289e-06	6.591300e-06	9.344628e-06	-5.029438e+00	...	15	32224022	...	4.654912e-07
TCGA-55-A493-01A-11D-A24D-08	334	323	11	239	3.293413e-02	exome+100bp flanks	2	35956486	...	82	218	309	2.280534e-06	6.062884e-06	8.593721e-06	-5.065819e+00	...	6	32224022	...	1.861965e-07
TCGA-55-A494-01A-11D-A24P-08	286	269	17	211	5.944056e-02	exome+100bp flanks	2	35956486	...	58	195	264	1.613061e-06	5.423222e-06	7.342208e-06	-5.134173e+00	...	6	32224022	...	1.861965e-07
TCGA-55-A4DF-01A-11D-A24D-08	907	878	29	657	3.197354e-02	exome+100bp flanks	2	35956486	...	217	620	853	6.035073e-06	1.724306e-05	2.372312e-05	-4.624828e+00	...	8	32224022	...	2.482620e-07
TCGA-55-A4DG-01A-11D-A24D-08	817	785	32	628	3.916769e-02	exome+100bp flanks	2	35956486	...	154	570	762	4.282955e-06	1.585249e-05	2.119228e-05	-4.673822e+00	...	27	32224022	...	8.378842e-07
TCGA-62-8394-01A-11D-2323-08	181	175	6	130	3.314917e-02	exome+100bp flanks	2	35956486	...	42	117	166	1.168079e-06	3.253933e-06	4.616691e-06	-5.335669e+00	...	6	32224022	...	1.861965e-07
TCGA-62-8395-01A-11D-2323-08	99	91	8	75	8.080808e-02	exome+100bp flanks	2	35956486	...	15	65	86	4.171709e-07	1.807741e-06	2.391780e-06	-5.621279e+00	...	6	32224022	...	1.861965e-07
TCGA-62-8397-01A-11D-2323-08	40	39	1	30	2.500000e-02	exome+100bp flanks	2	35956486	...	8	22	35	2.224912e-07	6.118507e-07	9.733988e-07	-6.011709e+00	...	5	32224022	...	1.551637e-07
TCGA-62-8398-01A-11D-2323-08	108	104	4	81	3.703704e-02	exome+100bp flanks	2	35956486	...	22	73	101	6.118507e-07	2.030232e-06	2.808951e-06	-5.551456e+00	...	5	32224022	...	1.551637e-07
TCGA-62-8399-01A-21D-2323-08	630	607	23	467	3.650794e-02	exome+100bp flanks	2	35956486	...	135	424	580	3.754538e-06	1.179203e-05	1.613061e-05	-4.792349e+00	...	15	32224022	...	4.654912e-07
TCGA-62-8402-01A-11D-2323-08	86	75	11	45	1.279070e-01	exome+100bp flanks	2	35956486	...	29	40	73	8.065304e-07	1.112456e-06	2.030232e-06	-5.692454e+00	...	2	32224022	...	6.206550e-08
TCGA-62-A46O-01A-11D-A24D-08	1076	1038	38	812	3.531599e-02	exome+100bp flanks	2	35956486	...	215	719	989	5.979450e-06	1.999639e-05	2.750547e-05	-4.560581e+00	...	41	32224022	...	1.272343e-06
TCGA-62-A46P-01A-11D-A24D-08	344	325	19	260	5.523256e-02	exome+100bp flanks	2	35956486	...	64	236	313	1.779929e-06	6.563489e-06	8.704966e-06	-5.060233e+00	...	9	32224022	...	2.792947e-07
TCGA-62-A46R-01A-11D-A24D-08	216	203	13	167	6.018519e-02	exome+100bp flanks	2	35956486	...	36	153	202	1.001210e-06	4.255143e-06	5.617902e-06	-5.250426e+00	...	11	32224022	...	3.413602e-07
TCGA-62-A46S-01A-11D-A24D-08	162	149	13	115	8.024691e-02	exome+100bp flanks	2	35956486	...	33	106	144	9.177760e-07	2.948008e-06	4.004841e-06	-5.397415e+00	...	2	32224022	...	6.206550e-08
TCGA-62-A46U-01A-11D-A24D-08	55	53	2	43	3.636364e-02	exome+100bp flanks	2	35956486	...	10	40	53	2.781139e-07	1.112456e-06	1.474004e-06	-5.831501e+00	...	2	32224022	...	6.206550e-08
TCGA-62-A46V-01A-11D-A24D-08	70	66	4	53	5.714286e-02	exome+100bp flanks	2	35956486	...	13	47	63	3.615481e-07	1.307136e-06	1.752118e-06	-5.756437e+00	...	3	32224022	...	9.309825e-08
TCGA-62-A46Y-01A-11D-A24D-08	50	46	4	38	8.000000e-02	exome+100bp flanks	2	35956486	...	8	28	46	2.224912e-07	7.787190e-07	1.279324e-06	-5.893019e+00	...	8	32224022	...	2.482620e-07
TCGA-62-A470-01A-11D-A24D-08	148	134	14	102	9.459459e-02	exome+100bp flanks	2	35956486	...	30	93	132	8.343418e-07	2.586460e-06	3.671104e-06	-5.435203e+00	...	7	32224022	...	2.172292e-07
TCGA-62-A471-01A-12D-A24D-08	139	130	9	94	6.474820e-02	exome+100bp flanks	2	35956486	...	35	85	125	9.733988e-07	2.363968e-06	3.476424e-06	-5.458867e+00	...	3	32224022	...	9.309825e-08
TCGA-62-A472-01A-11D-A24D-08	78	73	5	54	6.410256e-02	exome+100bp flanks	2	35956486	...	18	45	71	5.006051e-07	1.251513e-06	1.974609e-06	-5.704519e+00	...	7	32224022	...	2.172292e-07
TCGA-64-1676-01A-01D-0969-08	717	684	33	528	4.602510e-02	exome+100bp flanks	2	35956486	...	147	477	651	4.088275e-06	1.326603e-05	1.810522e-05	-4.742196e+00	...	18	32224022	...	5.585895e-07
TCGA-64-1677-01A-01W-0928-08	299	283	16	213	5.351171e-02	exome+100bp flanks	2	35956486	...	68	185	270	1.891175e-06	5.145108e-06	7.509076e-06	-5.124413e+00	...	13	32224022	...	4.034257e-07
TCGA-64-1679-01A-21D-2063-08	617	594	23	467	3.727715e-02	exome+100bp flanks	2	35956486	...	119	413	552	3.309556e-06	1.148611e-05	1.535189e-05	-4.813838e+00	...	15	32224022	...	4.654912e-07
TCGA-64-1681-01A-11D-2063-08	104	101	3	78	2.884615e-02	coding only	1	28827915	...	21	70	97	7.284606e-07	2.428202e-06	3.364794e-06	-5.473041e+00	...	4	28771724	...	1.390254e-07
TCGA-64-5774-01A-01D-1625-08	177	169	8	130	4.519774e-02	exome+100bp flanks	2	35956486	...	35	117	162	9.733988e-07	3.253933e-06	4.505446e-06	-5.346262e+00	...	7	32224022	...	2.172292e-07
TCGA-64-5775-01A-01D-1625-08	587	555	32	423	5.451448e-02	exome+100bp flanks	2	35956486	...	123	376	531	3.420801e-06	1.045708e-05	1.476785e-05	-4.830683e+00	...	26	32224022	...	8.068515e-07
TCGA-64-5778-01A-01D-1625-08	576	549	27	437	4.687500e-02	exome+100bp flanks	2	35956486	...	108	396	530	3.003631e-06	1.101331e-05	1.474004e-05	-4.831501e+00	...	17	32224022	...	5.275567e-07
TCGA-64-5779-01A-01D-1625-08	430	418	12	330	2.790698e-02	coding only	1	28827915	...	84	296	400	2.913842e-06	1.026783e-05	1.387544e-05	-4.857753e+00	...	13	28771724	...	4.518325e-07
TCGA-64-5781-01A-01D-1625-08	1354	1317	37	1018	2.732644e-02	coding only	1	28827915	...	286	920	1261	9.920939e-06	3.191351e-05	4.374232e-05	-4.359098e+00	...	42	28771724	...	1.459767e-06
TCGA-64-5815-01A-01D-1625-08	219	206	13	153	5.936073e-02	exome+100bp flanks	2	35956486	...	53	139	200	1.474004e-06	3.865784e-06	5.562279e-06	-5.254747e+00	...	5	32224022	...	1.551637e-07
TCGA-67-3771-01A-01D-1040-01	1293	1257	36	964	2.784223e-02	coding only	1	28827915	...	281	879	1212	9.747496e-06	3.049128e-05	4.204258e-05	-4.376311e+00	...	44	28771724	...	1.529279e-06
TCGA-67-3772-01A-01W-0928-08	95	88	7	67	7.368421e-02	exome+100bp flanks	2	35956486	...	21	48	83	5.840393e-07	1.334947e-06	2.308346e-06	-5.636699e+00	...	12	32224022	...	3.723930e-07
TCGA-67-3773-01A-01D-1040-01	133	118	15	96	1.127820e-01	exome+100bp flanks	2	35956486	...	22	87	120	6.118507e-07	2.419591e-06	3.337367e-06	-5.476596e+00	...	8	32224022	...	2.482620e-07
TCGA-67-4679-01B-01D-1753-08	342	329	13	254	3.801170e-02	exome+100bp flanks	2	35956486	...	73	228	316	2.030232e-06	6.340998e-06	8.788401e-06	-5.056090e+00	...	12	32224022	...	3.723930e-07
TCGA-67-6215-01A-11D-1753-08	143	136	7	108	4.895105e-02	exome+100bp flanks	2	35956486	...	27	99	130	7.509076e-07	2.753328e-06	3.615481e-06	-5.441834e+00	...	2	32224022	...	6.206550e-08
TCGA-67-6216-01A-11D-1753-08	60	55	5	45	8.333333e-02	exome+100bp flanks	2	35956486	...	10	37	52	2.781139e-07	1.029022e-06	1.446192e-06	-5.839774e+00	...	5	32224022	...	1.551637e-07
TCGA-67-6217-01A-11D-1753-08	225	220	5	174	2.222222e-02	coding only	1	28827915	...	43	158	209	1.491610e-06	5.480799e-06	7.249917e-06	-5.139667e+00	...	6	28771724	...	2.085381e-07
TCGA-69-7760-01A-11D-2167-08	100	94	6	69	6.000000e-02	exome+100bp flanks	2	35956486	...	24	57	91	6.674735e-07	1.585249e-06	2.530837e-06	-5.596736e+00	...	7	32224022	...	2.172292e-07
TCGA-69-7761-01A-11D-2167-08	53	45	8	36	1.509434e-01	exome+100bp flanks	2	35956486	...	9	28	43	2.503025e-07	7.787190e-07	1.195890e-06	-5.922309e+00	...	6	32224022	...	1.861965e-07
TCGA-69-7763-01A-11D-2167-08	110	100	10	73	9.090909e-02	exome+100bp flanks	2	35956486	...	27	66	100	7.509076e-07	1.835552e-06	2.781139e-06	-5.555777e+00	...	6	32224022	...	1.861965e-07
TCGA-69-7764-01A-11D-2167-08	129	120	9	87	6.976744e-02	exome+100bp flanks	2	35956486	...	33	79	117	9.177760e-07	2.197100e-06	3.253933e-06	-5.487591e+00	...	5	32224022	...	1.551637e-07
TCGA-69-7765-01A-11D-2167-08	794	769	25	589	3.148615e-02	exome+100bp flanks	2	35956486	...	177	533	735	4.922617e-06	1.482347e-05	2.044137e-05	-4.689490e+00	...	22	32224022	...	6.827205e-07
TCGA-69-7973-01A-11D-2184-08	304	291	13	228	4.276316e-02	exome+100bp flanks	2	35956486	...	61	207	281	1.696495e-06	5.756959e-06	7.815002e-06	-5.107071e+00	...	11	32224022	...	3.413602e-07
TCGA-69-7974-01A-11D-2184-08	626	604	22	481	3.514377e-02	exome+100bp flanks	2	35956486	...	123	439	591	3.420801e-06	1.220920e-05	1.643653e-05	-4.784190e+00	...	19	32224022	...	5.896222e-07
TCGA-69-7978-01A-11D-2184-08	778	765	13	576	1.670951e-02	coding only	1	28827915	...	184	531	732	6.382702e-06	1.841965e-05	2.539205e-05	-4.595302e+00	...	15	28771724	...	5.213452e-07
TCGA-69-7979-01A-11D-2184-08	1737	1665	72	1321	4.145078e-02	exome+100bp flanks	2	35956486	...	330	1221	1607	9.177760e-06	3.395771e-05	4.469291e-05	-4.349761e+00	...	34	32224022	...	1.055113e-06
TCGA-69-7980-01A-11D-2184-08	972	951	21	745	2.160494e-02	coding only	1	28827915	...	196	676	913	6.798966e-06	2.344949e-05	3.167069e-05	-4.499342e+00	...	32	28771724	...	1.112203e-06
TCGA-69-8253-01A-11D-2284-08	209	184	25	134	1.196172e-01	exome+100bp flanks	2	35956486	...	49	125	185	1.362758e-06	3.476424e-06	5.145108e-06	-5.288606e+00	...	5	32224022	...	1.551637e-07
TCGA-69-8254-01A-11D-2284-08	101	92	9	80	8.910891e-02	exome+100bp flanks	2	35956486	...	12	72	90	3.337367e-07	2.002420e-06	2.503025e-06	-5.601535e+00	...	3	32224022	...	9.309825e-08
TCGA-69-8255-01A-11D-2284-08	350	335	15	265	4.285714e-02	exome+100bp flanks	2	35956486	...	69	235	323	1.918986e-06	6.535678e-06	8.983080e-06	-5.046575e+00	...	15	32224022	...	4.654912e-07
TCGA-69-A59K-01A-11D-A25L-08	594	571	23	437	3.872054e-02	exome+100bp flanks	2	35956486	...	126	391	538	3.504236e-06	1.087426e-05	1.496253e-05	-4.824995e+00	...	14	32224022	...	4.344585e-07
TCGA-71-6725-01A-11D-1855-08	80	74	6	51	7.500000e-02	exome+100bp flanks	2	35956486	...	23	50	74	6.396621e-07	1.390570e-06	2.058043e-06	-5.686546e+00	...	1	32224022	...	3.103275e-08
TCGA-71-8520-01A-11D-2393-08	117	109	8	86	6.837607e-02	exome+100bp flanks	2	35956486	...	23	78	108	6.396621e-07	2.169289e-06	3.003631e-06	-5.522353e+00	...	5	32224022	...	1.551637e-07
TCGA-73-4658-01A-01D-1753-08	362	362	0	281	0	coding only	1	28827915	...	81	270	360	2.809777e-06	9.365922e-06	1.248790e-05	-4.903511e+00	...	7	28771724	...	2.432944e-07
TCGA-73-4659-01A-01D-1265-08	256	244	12	185	4.687500e-02	exome+100bp flanks	2	35956486	...	58	167	234	1.613061e-06	4.644503e-06	6.507866e-06	-5.186561e+00	...	8	32224022	...	2.482620e-07
TCGA-73-4662-01A-01D-1265-08	279	269	10	211	3.584229e-02	exome+100bp flanks	2	35956486	...	57	189	257	1.585249e-06	5.256353e-06	7.147528e-06	-5.145844e+00	...	9	32224022	...	2.792947e-07
TCGA-73-4666-01A-01D-1265-08	434	420	14	319	3.225806e-02	exome+100bp flanks	2	35956486	...	94	289	401	2.614271e-06	8.037493e-06	1.115237e-05	-4.952633e+00	...	14	32224022	...	4.344585e-07
TCGA-73-4668-01A-01D-1265-08	526	506	20	421	3.802281e-02	exome+100bp flanks	2	35956486	...	80	387	484	2.224912e-06	1.076301e-05	1.346071e-05	-4.870932e+00	...	11	32224022	...	3.413602e-07
TCGA-73-4670-01A-01D-1265-08	418	402	16	314	3.827751e-02	exome+100bp flanks	2	35956486	...	80	276	379	2.224912e-06	7.675945e-06	1.054052e-05	-4.977138e+00	...	21	32224022	...	6.516877e-07
TCGA-73-4675-01A-01D-1265-08	92	84	8	65	8.695652e-02	exome+100bp flanks	2	35956486	...	19	51	75	5.284165e-07	1.418381e-06	2.085855e-06	-5.680716e+00	...	5	32224022	...	1.551637e-07
TCGA-73-4676-01A-01D-1753-08	118	113	5	84	4.237288e-02	exome+100bp flanks	2	35956486	...	26	76	110	7.230962e-07	2.113666e-06	3.059253e-06	-5.514385e+00	...	7	32224022	...	2.172292e-07
TCGA-73-4677-01A-01D-1265-08	296	286	10	225	3.378378e-02	exome+100bp flanks	2	35956486	...	58	206	272	1.613061e-06	5.729147e-06	7.564699e-06	-5.121208e+00	...	6	32224022	...	1.861965e-07
TCGA-73-7498-01A-12D-2184-08	148	140	8	102	5.405405e-02	exome+100bp flanks	2	35956486	...	37	90	137	1.029022e-06	2.503025e-06	3.810161e-06	-5.419057e+00	...	10	32224022	...	3.103275e-07
TCGA-73-7499-01A-11D-2184-08	95	93	2	74	2.105263e-02	coding only	1	28827915	...	19	69	91	6.590834e-07	2.393513e-06	3.156663e-06	-5.500772e+00	...	3	28771724	...	1.042690e-07
TCGA-75-5122-01A-01D-1753-08	194	183	11	133	5.670103e-02	exome+100bp flanks	2	35956486	...	50	113	171	1.390570e-06	3.142688e-06	4.755748e-06	-5.322781e+00	...	6	32224022	...	1.861965e-07
TCGA-75-5125-01A-01D-1753-08	213	208	5	161	2.347418e-02	coding only	1	28827915	...	43	137	195	1.491610e-06	4.752338e-06	6.764277e-06	-5.169779e+00	...	14	28771724	...	4.865888e-07
TCGA-75-5126-01A-01D-1753-08	784	761	23	579	2.933673e-02	coding only	1	28827915	...	171	536	729	5.931751e-06	1.859309e-05	2.528799e-05	-4.597086e+00	...	16	28771724	...	5.561015e-07
TCGA-75-5146-01A-01D-1625-08	234	226	8	175	3.418803e-02	exome+100bp flanks	2	35956486	...	50	159	219	1.390570e-06	4.422012e-06	6.090695e-06	-5.215333e+00	...	9	32224022	...	2.792947e-07
TCGA-75-5147-01A-01D-1625-08	60	58	2	48	3.333333e-02	exome+100bp flanks	2	35956486	...	9	44	57	2.503025e-07	1.223701e-06	1.585249e-06	-5.799902e+00	...	4	32224022	...	1.241310e-07
TCGA-75-6203-01A-11D-1753-08	23	23	0	15	0	exome+100bp flanks	2	35956486	...	7	11	21	1.946798e-07	3.059253e-07	5.840393e-07	-6.233558e+00	...	3	32224022	...	9.309825e-08
TCGA-75-6205-01A-11D-1753-08	60	57	3	48	5.000000e-02	exome+100bp flanks	2	35956486	...	9	44	55	2.503025e-07	1.223701e-06	1.529627e-06	-5.815415e+00	...	1	32224022	...	3.103275e-08
TCGA-75-6206-01A-11D-1753-08	109	106	3	87	2.752294e-02	coding only	1	28827915	...	17	78	99	5.897062e-07	2.705711e-06	3.434171e-06	-5.464178e+00	...	3	28771724	...	1.042690e-07
TCGA-75-6207-01A-11D-1753-08	95	88	7	63	7.368421e-02	exome+100bp flanks	2	35956486	...	25	59	88	6.952849e-07	1.640872e-06	2.447403e-06	-5.611295e+00	...	3	32224022	...	9.309825e-08
TCGA-75-6211-01A-11D-1753-08	424	405	19	324	4.481132e-02	exome+100bp flanks	2	35956486	...	79	302	392	2.197100e-06	8.399041e-06	1.090207e-05	-4.962491e+00	...	7	32224022	...	2.172292e-07
TCGA-75-6212-01A-11D-1753-08	32	28	4	21	1.250000e-01	exome+100bp flanks	2	35956486	...	6	18	29	1.668684e-07	5.006051e-07	8.065304e-07	-6.093379e+00	...	3	32224022	...	9.309825e-08
TCGA-75-6214-01A-41D-1945-08	893	861	32	666	3.583427e-02	exome+100bp flanks	2	35956486	...	182	614	824	5.061674e-06	1.707620e-05	2.291659e-05	-4.639850e+00	...	20	32224022	...	6.206550e-07
TCGA-75-7025-01A-12D-1945-08	51	49	2	34	3.921569e-02	exome+100bp flanks	2	35956486	...	14	29	46	3.893595e-07	8.065304e-07	1.279324e-06	-5.893019e+00	...	3	32224022	...	9.309825e-08
TCGA-75-7027-01A-11D-1945-08	284	267	17	200	5.985915e-02	exome+100bp flanks	2	35956486	...	63	181	256	1.752118e-06	5.033862e-06	7.119717e-06	-5.147537e+00	...	8	32224022	...	2.482620e-07
TCGA-75-7030-01A-11D-1945-08	27	24	3	21	1.111111e-01	exome+100bp flanks	2	35956486	...	3	19	23	8.343418e-08	5.284165e-07	6.396621e-07	-6.194049e+00	...	1	32224022	...	3.103275e-08
TCGA-75-7031-01A-11D-1945-08	257	248	9	189	3.501946e-02	exome+100bp flanks	2	35956486	...	55	166	239	1.529627e-06	4.616691e-06	6.646923e-06	-5.177379e+00	...	13	32224022	...	4.034257e-07
TCGA-78-7143-01A-11D-2036-08	49	49	0	42	0	exome+100bp flanks	2	35956486	...	7	37	48	1.946798e-07	1.029022e-06	1.334947e-06	-5.874536e+00	...	4	32224022	...	1.241310e-07
TCGA-78-7145-01A-11D-2036-08	239	222	17	175	7.112971e-02	exome+100bp flanks	2	35956486	...	43	154	209	1.195890e-06	4.282955e-06	5.812581e-06	-5.235631e+00	...	8	32224022	...	2.482620e-07
TCGA-78-7146-01A-11D-2036-08	432	417	15	313	3.472222e-02	exome+100bp flanks	2	35956486	...	97	284	391	2.697705e-06	7.898436e-06	1.087426e-05	-4.963600e+00	...	8	32224022	...	2.482620e-07
TCGA-78-7147-01A-11D-2036-08	411	399	12	296	2.919708e-02	coding only	1	28827915	...	103	268	387	3.572926e-06	9.296545e-06	1.342449e-05	-4.872102e+00	...	15	28771724	...	5.213452e-07
TCGA-78-7148-01A-11D-2036-08	278	268	10	209	3.597122e-02	exome+100bp flanks	2	35956486	...	52	191	255	1.446192e-06	5.311976e-06	7.091905e-06	-5.149237e+00	...	10	32224022	...	3.103275e-07
TCGA-78-7149-01A-11D-2036-08	195	190	5	141	2.564103e-02	coding only	1	28827915	...	48	126	178	1.665053e-06	4.370764e-06	6.174571e-06	-5.209393e+00	...	3	28771724	...	1.042690e-07
TCGA-78-7150-01A-21D-2036-08	492	482	10	360	2.032520e-02	coding only	1	28827915	...	114	330	462	3.954500e-06	1.144724e-05	1.602613e-05	-4.795171e+00	...	16	28771724	...	5.561015e-07
TCGA-78-7152-01A-11D-2036-08	249	237	12	177	4.819277e-02	exome+100bp flanks	2	35956486	...	53	162	226	1.474004e-06	4.505446e-06	6.285375e-06	-5.201669e+00	...	9	32224022	...	2.792947e-07
TCGA-78-7153-01A-11D-2036-08	156	148	8	109	5.128205e-02	exome+100bp flanks	2	35956486	...	36	97	140	1.001210e-06	2.697705e-06	3.893595e-06	-5.409649e+00	...	5	32224022	...	1.551637e-07
TCGA-78-7154-01A-11D-2036-08	309	298	11	204	3.559871e-02	exome+100bp flanks	2	35956486	...	89	187	285	2.475214e-06	5.200731e-06	7.926247e-06	-5.100932e+00	...	8	32224022	...	2.482620e-07
TCGA-78-7155-01A-11D-2036-08	1790	1724	66	1391	3.687151e-02	exome+100bp flanks	2	35956486	...	320	1232	1637	8.899646e-06	3.426364e-05	4.552725e-05	-4.341729e+00	...	66	32224022	...	2.048161e-06
TCGA-78-7156-01A-11D-2036-08	397	384	13	304	3.274559e-02	exome+100bp flanks	2	35956486	...	74	286	373	2.058043e-06	7.954059e-06	1.037365e-05	-4.984068e+00	...	11	32224022	...	3.413602e-07
TCGA-78-7158-01A-11D-2036-08	285	276	9	224	3.157895e-02	exome+100bp flanks	2	35956486	...	51	204	266	1.418381e-06	5.673524e-06	7.397831e-06	-5.130896e+00	...	8	32224022	...	2.482620e-07
TCGA-78-7159-01A-11D-2036-08	363	350	13	264	3.581267e-02	exome+100bp flanks	2	35956486	...	84	239	339	2.336157e-06	6.646923e-06	9.428063e-06	-5.025578e+00	...	12	32224022	...	3.723930e-07
TCGA-78-7160-01A-11D-2036-08	57	54	3	34	5.263158e-02	exome+100bp flanks	2	35956486	...	19	31	53	5.284165e-07	8.621532e-07	1.474004e-06	-5.831501e+00	...	2	32224022	...	6.206550e-08
TCGA-78-7161-01A-11D-2036-08	227	220	7	161	3.083700e-02	exome+100bp flanks	2	35956486	...	56	142	212	1.557438e-06	3.949218e-06	5.896016e-06	-5.229441e+00	...	9	32224022	...	2.792947e-07
TCGA-78-7162-01A-21D-2063-08	110	107	3	79	2.727273e-02	coding only	1	28827915	...	28	69	101	9.712808e-07	2.393513e-06	3.503549e-06	-5.455492e+00	...	3	28771724	...	1.042690e-07
TCGA-78-7163-01A-12D-2063-08	30	28	2	22	6.666667e-02	exome+100bp flanks	2	35956486	...	6	20	28	1.668684e-07	5.562279e-07	7.787190e-07	-6.108619e+00	...	2	32224022	...	6.206550e-08
TCGA-78-7166-01A-12D-2063-08	261	256	5	193	1.915709e-02	coding only	1	28827915	...	62	179	249	2.150693e-06	6.209259e-06	8.637461e-06	-5.063614e+00	...	8	28771724	...	2.780508e-07
TCGA-78-7167-01A-11D-2063-08	122	118	4	91	3.278689e-02	exome+100bp flanks	2	35956486	...	27	83	116	7.509076e-07	2.308346e-06	3.226122e-06	-5.491319e+00	...	6	32224022	...	1.861965e-07
TCGA-78-7220-01A-11D-2036-08	975	950	25	733	2.564103e-02	coding only	1	28827915	...	210	663	914	7.284606e-06	2.299854e-05	3.170538e-05	-4.498867e+00	...	31	28771724	...	1.077447e-06
TCGA-78-7535-01A-11D-2063-08	211	202	9	145	4.265403e-02	exome+100bp flanks	2	35956486	...	51	133	191	1.418381e-06	3.698915e-06	5.311976e-06	-5.274744e+00	...	5	32224022	...	1.551637e-07
TCGA-78-7536-01A-11D-2063-08	708	685	23	526	3.248588e-02	exome+100bp flanks	2	35956486	...	152	478	657	4.227332e-06	1.329385e-05	1.827209e-05	-4.738212e+00	...	20	32224022	...	6.206550e-07
TCGA-78-7537-01A-11D-2063-08	169	162	7	136	4.142012e-02	exome+100bp flanks	2	35956486	...	26	119	158	7.230962e-07	3.309556e-06	4.394200e-06	-5.357120e+00	...	13	32224022	...	4.034257e-07
TCGA-78-7539-01A-11D-2063-08	584	564	20	424	3.424658e-02	exome+100bp flanks	2	35956486	...	132	391	541	3.671104e-06	1.087426e-05	1.504596e-05	-4.822580e+00	...	13	32224022	...	4.034257e-07
TCGA-78-7540-01A-11D-2063-08	37	37	0	26	0	exome+100bp flanks	2	35956486	...	10	24	36	2.781139e-07	6.674735e-07	1.001210e-06	-5.999475e+00	...	1	32224022	...	3.103275e-08
TCGA-78-7542-01A-21D-2063-08	451	435	16	329	3.547672e-02	exome+100bp flanks	2	35956486	...	102	295	414	2.836762e-06	8.204361e-06	1.151392e-05	-4.938777e+00	...	13	32224022	...	4.034257e-07
TCGA-78-7633-01A-11D-2063-08	128	122	6	96	4.687500e-02	exome+100bp flanks	2	35956486	...	25	88	121	6.952849e-07	2.447403e-06	3.365179e-06	-5.472992e+00	...	7	32224022	...	2.172292e-07
TCGA-78-8640-01A-11D-2393-08	872	842	30	660	3.440367e-02	exome+100bp flanks	2	35956486	...	173	608	808	4.811371e-06	1.690933e-05	2.247161e-05	-4.648366e+00	...	20	32224022	...	6.206550e-07
TCGA-78-8648-01A-11D-2393-08	18	17	1	16	5.555556e-02	exome+100bp flanks	2	35956486	...	1	15	16	2.781139e-08	4.171709e-07	4.449823e-07	-6.351657e+00	...	0	32224022	...	0
TCGA-78-8655-01A-11D-2393-08	134	127	7	100	5.223881e-02	exome+100bp flanks	2	35956486	...	27	85	121	7.509076e-07	2.363968e-06	3.365179e-06	-5.472992e+00	...	7	32224022	...	2.172292e-07
TCGA-78-8660-01A-11D-2393-08	311	298	13	225	4.180064e-02	exome+100bp flanks	2	35956486	...	71	202	285	1.974609e-06	5.617902e-06	7.926247e-06	-5.100932e+00	...	10	32224022	...	3.103275e-07
TCGA-78-8662-01A-11D-2393-08	1390	1330	60	1033	4.316547e-02	exome+100bp flanks	2	35956486	...	281	955	1276	7.815002e-06	2.655988e-05	3.548734e-05	-4.449927e+00	...	24	32224022	...	7.447860e-07
TCGA-80-5607-01A-31D-1945-08	156	150	6	117	3.846154e-02	exome+100bp flanks	2	35956486	...	30	111	145	8.343418e-07	3.087065e-06	4.032652e-06	-5.394409e+00	...	2	32224022	...	6.206550e-08
TCGA-80-5608-01A-31D-1945-08	201	192	9	149	4.477612e-02	exome+100bp flanks	2	35956486	...	41	139	189	1.140267e-06	3.865784e-06	5.256353e-06	-5.279315e+00	...	4	32224022	...	1.241310e-07
TCGA-80-5611-01A-01D-1625-08	254	243	11	193	4.330709e-02	exome+100bp flanks	2	35956486	...	48	173	235	1.334947e-06	4.811371e-06	6.535678e-06	-5.184709e+00	...	12	32224022	...	3.723930e-07
TCGA-83-5908-01A-21D-2284-08	299	291	8	226	2.675585e-02	coding only	1	28827915	...	60	203	274	2.081316e-06	7.041786e-06	9.504676e-06	-5.022063e+00	...	9	28771724	...	3.128071e-07
TCGA-86-6562-01A-11D-1753-08	71	68	3	54	4.225352e-02	exome+100bp flanks	2	35956486	...	14	50	66	3.893595e-07	1.390570e-06	1.835552e-06	-5.736233e+00	...	1	32224022	...	3.103275e-08
TCGA-86-6851-01A-11D-1945-08	1110	1072	38	842	3.423423e-02	exome+100bp flanks	2	35956486	...	215	762	1017	5.979450e-06	2.119228e-05	2.828419e-05	-4.548456e+00	...	31	32224022	...	9.620152e-07
TCGA-86-7701-01A-11D-2167-08	250	239	11	182	4.400000e-02	exome+100bp flanks	2	35956486	...	53	166	233	1.474004e-06	4.616691e-06	6.480055e-06	-5.188421e+00	...	10	32224022	...	3.103275e-07
TCGA-86-7711-01A-11D-2063-08	288	277	11	204	3.819444e-02	exome+100bp flanks	2	35956486	...	69	183	266	1.918986e-06	5.089485e-06	7.397831e-06	-5.130896e+00	...	12	32224022	...	3.723930e-07
TCGA-86-7713-01A-11D-2063-08	190	183	7	147	3.684211e-02	exome+100bp flanks	2	35956486	...	34	130	174	9.455874e-07	3.615481e-06	4.839183e-06	-5.315228e+00	...	8	32224022	...	2.482620e-07
TCGA-86-7714-01A-12D-2167-08	102	99	3	75	2.941176e-02	coding only	1	28827915	...	23	63	94	7.978378e-07	2.185382e-06	3.260728e-06	-5.486685e+00	...	7	28771724	...	2.432944e-07
TCGA-86-7953-01A-11D-2184-08	70	67	3	54	4.285714e-02	exome+100bp flanks	2	35956486	...	11	50	64	3.059253e-07	1.390570e-06	1.779929e-06	-5.749597e+00	...	3	32224022	...	9.309825e-08
TCGA-86-7954-01A-11D-2184-08	285	276	9	197	3.157895e-02	exome+100bp flanks	2	35956486	...	75	185	267	2.085855e-06	5.145108e-06	7.425642e-06	-5.129266e+00	...	5	32224022	...	1.551637e-07
TCGA-86-7955-01A-11D-2184-08	376	359	17	275	4.521277e-02	exome+100bp flanks	2	35956486	...	77	236	334	2.141477e-06	6.563489e-06	9.289006e-06	-5.032031e+00	...	17	32224022	...	5.275567e-07
TCGA-86-8054-01A-11D-2238-08	283	267	16	214	5.653710e-02	exome+100bp flanks	2	35956486	...	52	189	257	1.446192e-06	5.256353e-06	7.147528e-06	-5.145844e+00	...	12	32224022	...	3.723930e-07
TCGA-86-8055-01A-11D-2238-08	79	71	8	51	1.012658e-01	exome+100bp flanks	2	35956486	...	20	45	68	5.562279e-07	1.251513e-06	1.891175e-06	-5.723268e+00	...	2	32224022	...	6.206550e-08
TCGA-86-8056-01A-11D-2238-08	357	350	7	277	1.960784e-02	coding only	1	28827915	...	72	246	329	2.497579e-06	8.533395e-06	1.141255e-05	-4.942617e+00	...	7	28771724	...	2.432944e-07
TCGA-86-8073-01A-11D-2238-08	1896	1845	51	1418	2.689873e-02	coding only	1	28827915	...	418	1317	1791	1.449983e-05	4.568489e-05	6.212728e-05	-4.206718e+00	...	33	28771724	...	1.146959e-06
TCGA-86-8074-01A-11D-2238-08	86	83	3	65	3.488372e-02	exome+100bp flanks	2	35956486	...	18	59	80	5.006051e-07	1.640872e-06	2.224912e-06	-5.652687e+00	...	3	32224022	...	9.309825e-08
TCGA-86-8075-01A-11D-2238-08	66	64	2	51	3.030303e-02	exome+100bp flanks	2	35956486	...	12	42	60	3.337367e-07	1.168079e-06	1.668684e-06	-5.777626e+00	...	6	32224022	...	1.861965e-07
TCGA-86-8076-01A-31D-2238-08	93	89	4	70	4.301075e-02	exome+100bp flanks	2	35956486	...	18	64	85	5.006051e-07	1.779929e-06	2.363968e-06	-5.626358e+00	...	3	32224022	...	9.309825e-08
TCGA-86-8278-01A-11D-2284-08	134	130	4	98	2.985075e-02	coding only	1	28827915	...	31	94	125	1.075347e-06	3.260728e-06	4.336075e-06	-5.362903e+00	...	0	28771724	...	0
TCGA-86-8279-01A-11D-2284-08	605	589	16	459	2.644628e-02	coding only	1	28827915	...	126	428	571	4.370764e-06	1.484672e-05	1.980719e-05	-4.703177e+00	...	12	28771724	...	4.170762e-07
TCGA-86-8280-01A-11D-2284-08	70	66	4	53	5.714286e-02	exome+100bp flanks	2	35956486	...	13	48	65	3.615481e-07	1.334947e-06	1.807741e-06	-5.742864e+00	...	4	32224022	...	1.241310e-07
TCGA-86-8281-01A-11D-2284-08	336	320	16	243	4.761905e-02	exome+100bp flanks	2	35956486	...	77	223	317	2.141477e-06	6.201941e-06	8.816212e-06	-5.054718e+00	...	11	32224022	...	3.413602e-07
TCGA-86-8358-01A-11D-2323-08	1291	1245	46	961	3.563129e-02	exome+100bp flanks	2	35956486	...	276	885	1199	7.675945e-06	2.461308e-05	3.334586e-05	-4.476958e+00	...	28	32224022	...	8.689170e-07
TCGA-86-8359-01A-11D-2323-08	195	191	4	146	2.051282e-02	coding only	1	28827915	...	43	123	182	1.491610e-06	4.266698e-06	6.313325e-06	-5.199742e+00	...	10	28771724	...	3.475635e-07
TCGA-86-8585-01A-11D-2393-08	679	655	24	529	3.534610e-02	exome+100bp flanks	2	35956486	...	122	472	635	3.392990e-06	1.312698e-05	1.766024e-05	-4.753004e+00	...	29	32224022	...	8.999497e-07
TCGA-86-8668-01A-11D-2393-08	46	46	0	34	0	exome+100bp flanks	2	35956486	...	11	32	44	3.059253e-07	8.899646e-07	1.223701e-06	-5.912325e+00	...	1	32224022	...	3.103275e-08
TCGA-86-8669-01A-11D-2393-08	163	158	5	117	3.067485e-02	exome+100bp flanks	2	35956486	...	38	99	149	1.056833e-06	2.753328e-06	4.143898e-06	-5.382591e+00	...	11	32224022	...	3.413602e-07
TCGA-86-8671-01A-11D-2393-08	72	71	1	52	1.388889e-02	coding only	1	28827915	...	19	46	68	6.590834e-07	1.595676e-06	2.358825e-06	-5.627304e+00	...	2	28771724	...	6.951269e-08
TCGA-86-8672-01A-21D-2393-08	387	366	21	269	5.426357e-02	exome+100bp flanks	2	35956486	...	92	241	352	2.558648e-06	6.702546e-06	9.789611e-06	-5.009235e+00	...	11	32224022	...	3.413602e-07
TCGA-86-8673-01A-11D-2393-08	600	583	17	453	2.833333e-02	coding only	1	28827915	...	123	401	551	4.266698e-06	1.391013e-05	1.911342e-05	-4.718662e+00	...	23	28771724	...	7.993960e-07
TCGA-86-8674-01A-21D-2393-08	373	361	12	274	3.217158e-02	exome+100bp flanks	2	35956486	...	85	245	349	2.363968e-06	6.813792e-06	9.706177e-06	-5.012952e+00	...	16	32224022	...	4.965240e-07
TCGA-86-A456-01A-11D-A24D-08	450	437	13	340	2.888889e-02	coding only	1	28827915	...	90	319	420	3.121974e-06	1.106566e-05	1.456921e-05	-4.836564e+00	...	8	28771724	...	2.780508e-07
TCGA-86-A4JF-01A-11D-A24P-08	1716	1668	48	1266	2.797203e-02	coding only	1	28827915	...	383	1050	1586	1.328573e-05	3.642303e-05	5.501612e-05	-4.259510e+00	...	142	28771724	...	4.935401e-06
TCGA-86-A4P7-01A-11D-A24P-08	100	93	7	76	7.000000e-02	exome+100bp flanks	2	35956486	...	16	68	92	4.449823e-07	1.891175e-06	2.558648e-06	-5.591989e+00	...	5	32224022	...	1.551637e-07
TCGA-86-A4P8-01A-11D-A24P-08	5	4	1	2	2.000000e-01	exome+100bp flanks	2	35956486	...	1	1	3	2.781139e-08	2.781139e-08	8.343418e-08	-7.078656e+00	...	1	32224022	...	3.103275e-08
TCGA-91-6828-01A-11D-1855-08	372	363	9	302	2.419355e-02	coding only	1	28827915	...	58	272	348	2.011939e-06	9.435299e-06	1.207163e-05	-4.918234e+00	...	16	28771724	...	5.561015e-07
TCGA-91-6829-01A-21D-1855-08	771	750	21	590	2.723735e-02	coding only	1	28827915	...	154	539	722	5.342044e-06	1.869716e-05	2.504517e-05	-4.601276e+00	...	20	28771724	...	6.951269e-07
TCGA-91-6830-01A-11D-1945-08	369	357	12	265	3.252033e-02	exome+100bp flanks	2	35956486	...	90	244	346	2.503025e-06	6.785980e-06	9.622742e-06	-5.016701e+00	...	8	32224022	...	2.482620e-07
TCGA-91-6831-01A-11D-1855-08	356	342	14	266	3.932584e-02	exome+100bp flanks	2	35956486	...	72	242	332	2.002420e-06	6.730357e-06	9.233383e-06	-5.034639e+00	...	15	32224022	...	4.654912e-07
TCGA-91-6835-01A-11D-1855-08	129	118	11	88	8.527132e-02	exome+100bp flanks	2	35956486	...	27	83	112	7.509076e-07	2.308346e-06	3.114876e-06	-5.506559e+00	...	2	32224022	...	6.206550e-08
TCGA-91-6836-01A-21D-1855-08	535	509	26	393	4.859813e-02	exome+100bp flanks	2	35956486	...	109	355	480	3.031442e-06	9.873045e-06	1.334947e-05	-4.874536e+00	...	12	32224022	...	3.723930e-07
TCGA-91-6840-01A-11D-1945-08	139	134	5	106	3.597122e-02	exome+100bp flanks	2	35956486	...	26	92	126	7.230962e-07	2.558648e-06	3.504236e-06	-5.455407e+00	...	6	32224022	...	1.861965e-07
TCGA-91-6847-01A-11D-1945-08	111	107	4	70	3.603604e-02	exome+100bp flanks	2	35956486	...	35	59	100	9.733988e-07	1.640872e-06	2.781139e-06	-5.555777e+00	...	6	32224022	...	1.861965e-07
TCGA-91-6848-01A-11D-1945-08	712	687	25	519	3.511236e-02	exome+100bp flanks	2	35956486	...	162	477	658	4.505446e-06	1.326603e-05	1.829990e-05	-4.737551e+00	...	14	32224022	...	4.344585e-07
TCGA-91-6849-01A-11D-1945-08	145	136	9	106	6.206897e-02	exome+100bp flanks	2	35956486	...	28	87	125	7.787190e-07	2.419591e-06	3.476424e-06	-5.458867e+00	...	7	32224022	...	2.172292e-07
TCGA-91-7771-01A-11D-2167-08	279	272	7	215	2.508961e-02	coding only	1	28827915	...	55	192	259	1.907873e-06	6.660211e-06	8.984347e-06	-5.046513e+00	...	9	28771724	...	3.128071e-07
TCGA-91-8496-01A-11D-2393-08	56	50	6	38	1.071429e-01	exome+100bp flanks	2	35956486	...	12	28	48	3.337367e-07	7.787190e-07	1.334947e-06	-5.874536e+00	...	6	32224022	...	1.861965e-07
TCGA-91-8497-01A-11D-2393-08	67	62	5	48	7.462687e-02	exome+100bp flanks	2	35956486	...	12	43	61	3.337367e-07	1.195890e-06	1.696495e-06	-5.770447e+00	...	5	32224022	...	1.551637e-07
TCGA-91-8499-01A-11D-2393-08	381	361	20	284	5.249344e-02	exome+100bp flanks	2	35956486	...	69	253	340	1.918986e-06	7.036283e-06	9.455874e-06	-5.024298e+00	...	13	32224022	...	4.034257e-07
TCGA-91-A4BC-01A-11D-A24D-08	564	541	23	416	4.078014e-02	exome+100bp flanks	2	35956486	...	120	382	517	3.337367e-06	1.062395e-05	1.437849e-05	-4.842287e+00	...	11	32224022	...	3.413602e-07
TCGA-91-A4BD-01A-11D-A24D-08	29	24	5	17	1.724138e-01	exome+100bp flanks	2	35956486	...	7	15	25	1.946798e-07	4.171709e-07	6.952849e-07	-6.157837e+00	...	2	32224022	...	6.206550e-08
TCGA-93-7347-01A-11D-2184-08	154	146	8	114	5.194805e-02	exome+100bp flanks	2	35956486	...	31	102	140	8.621532e-07	2.836762e-06	3.893595e-06	-5.409649e+00	...	6	32224022	...	1.861965e-07
TCGA-93-7348-01A-21D-2036-08	136	127	9	105	6.617647e-02	exome+100bp flanks	2	35956486	...	22	97	125	6.118507e-07	2.697705e-06	3.476424e-06	-5.458867e+00	...	2	32224022	...	6.206550e-08
TCGA-93-8067-01A-11D-2284-08	639	619	20	464	3.129890e-02	exome+100bp flanks	2	35956486	...	144	429	586	4.004841e-06	1.193109e-05	1.629748e-05	-4.787880e+00	...	7	32224022	...	2.172292e-07
TCGA-93-A4JN-01A-11D-A24P-08	103	97	6	76	5.825243e-02	exome+100bp flanks	2	35956486	...	21	71	95	5.840393e-07	1.974609e-06	2.642082e-06	-5.578054e+00	...	3	32224022	...	9.309825e-08
TCGA-93-A4JO-01A-21D-A24P-08	69	65	4	53	5.797101e-02	exome+100bp flanks	2	35956486	...	12	46	62	3.337367e-07	1.279324e-06	1.724306e-06	-5.763386e+00	...	4	32224022	...	1.241310e-07
TCGA-93-A4JP-01A-11D-A24P-08	88	81	7	57	7.954545e-02	exome+100bp flanks	2	35956486	...	23	51	79	6.396621e-07	1.418381e-06	2.197100e-06	-5.658150e+00	...	3	32224022	...	9.309825e-08
TCGA-93-A4JQ-01A-11D-A24P-08	145	141	4	107	2.758621e-02	coding only	1	28827915	...	32	99	134	1.110035e-06	3.434171e-06	4.648272e-06	-5.332708e+00	...	1	28771724	...	3.475635e-08
TCGA-95-7039-01A-11D-1945-08	1521	1465	56	1144	3.681788e-02	exome+100bp flanks	2	35956486	...	309	1030	1408	8.593721e-06	2.864574e-05	3.915844e-05	-4.407175e+00	...	56	32224022	...	1.737834e-06
TCGA-95-7043-01A-11D-1945-08	1287	1251	36	988	2.797203e-02	coding only	1	28827915	...	252	884	1200	8.741527e-06	3.066472e-05	4.162632e-05	-4.380632e+00	...	53	28771724	...	1.842086e-06
TCGA-95-7562-01A-11D-2238-08	488	464	24	391	4.918033e-02	exome+100bp flanks	2	35956486	...	70	329	447	1.946798e-06	9.149949e-06	1.243169e-05	-4.905470e+00	...	44	32224022	...	1.365441e-06
TCGA-95-7567-01A-11D-2063-08	1133	1102	31	839	2.736099e-02	coding only	1	28827915	...	250	745	1060	8.672150e-06	2.584301e-05	3.676992e-05	-4.434507e+00	...	55	28771724	...	1.911599e-06
TCGA-95-7944-01A-11D-2184-08	311	305	6	223	1.929260e-02	coding only	1	28827915	...	78	205	295	2.705711e-06	7.111163e-06	1.023314e-05	-4.989991e+00	...	10	28771724	...	3.475635e-07
TCGA-95-7947-01A-11D-2184-08	629	610	19	462	3.020668e-02	exome+100bp flanks	2	35956486	...	137	425	580	3.810161e-06	1.181984e-05	1.613061e-05	-4.792349e+00	...	12	32224022	...	3.723930e-07
TCGA-95-7948-01A-11D-2184-08	189	183	6	152	3.174603e-02	exome+100bp flanks	2	35956486	...	30	141	178	8.343418e-07	3.921407e-06	4.950428e-06	-5.305357e+00	...	6	32224022	...	1.861965e-07
TCGA-95-8039-01A-11D-2238-08	131	131	0	102	0	coding only	1	28827915	...	29	86	123	1.005969e-06	2.983220e-06	4.266698e-06	-5.369908e+00	...	8	28771724	...	2.780508e-07
TCGA-95-8494-01A-11D-2323-08	134	126	8	87	5.970149e-02	exome+100bp flanks	2	35956486	...	37	82	123	1.029022e-06	2.280534e-06	3.420801e-06	-5.465872e+00	...	2	32224022	...	6.206550e-08
TCGA-95-A4VK-01A-11D-A25L-08	297	282	15	216	5.050505e-02	exome+100bp flanks	2	35956486	...	65	196	275	1.807741e-06	5.451033e-06	7.648133e-06	-5.116445e+00	...	7	32224022	...	2.172292e-07
TCGA-95-A4VN-01A-11D-A25L-08	580	558	22	435	3.793103e-02	exome+100bp flanks	2	35956486	...	120	395	538	3.337367e-06	1.098550e-05	1.496253e-05	-4.824995e+00	...	14	32224022	...	4.344585e-07
TCGA-95-A4VP-01A-21D-A25L-08	159	149	10	116	6.289308e-02	exome+100bp flanks	2	35956486	...	33	101	141	9.177760e-07	2.808951e-06	3.921407e-06	-5.406558e+00	...	5	32224022	...	1.551637e-07
TCGA-97-7546-01A-11D-2036-08	338	328	10	254	2.958580e-02	coding only	1	28827915	...	73	239	325	2.532268e-06	8.290575e-06	1.127379e-05	-4.947930e+00	...	8	28771724	...	2.780508e-07
TCGA-97-7547-01A-11D-2036-08	224	215	9	156	4.017857e-02	exome+100bp flanks	2	35956486	...	54	145	207	1.501815e-06	4.032652e-06	5.756959e-06	-5.239807e+00	...	6	32224022	...	1.861965e-07
TCGA-97-7552-01A-11D-2036-08	50	45	5	29	1.000000e-01	exome+100bp flanks	2	35956486	...	16	23	42	4.449823e-07	6.396621e-07	1.168079e-06	-5.932528e+00	...	2	32224022	...	6.206550e-08
TCGA-97-7553-01A-21D-2036-08	79	69	10	57	1.265823e-01	exome+100bp flanks	2	35956486	...	12	38	70	3.337367e-07	1.056833e-06	1.946798e-06	-5.710679e+00	...	17	32224022	...	5.275567e-07
TCGA-97-7554-01A-11D-2036-08	546	529	17	406	3.113553e-02	exome+100bp flanks	2	35956486	...	119	364	510	3.309556e-06	1.012335e-05	1.418381e-05	-4.848207e+00	...	21	32224022	...	6.516877e-07
TCGA-97-7937-01A-11D-2167-08	564	546	18	444	3.191489e-02	exome+100bp flanks	2	35956486	...	97	397	524	2.697705e-06	1.104112e-05	1.457317e-05	-4.836446e+00	...	26	32224022	...	8.068515e-07
TCGA-97-7938-01A-11D-2167-08	486	471	15	366	3.086420e-02	exome+100bp flanks	2	35956486	...	101	335	449	2.808951e-06	9.316817e-06	1.248732e-05	-4.903531e+00	...	11	32224022	...	3.413602e-07
TCGA-97-7941-01A-11D-2184-08	129	122	7	91	5.426357e-02	exome+100bp flanks	2	35956486	...	29	79	115	8.065304e-07	2.197100e-06	3.198310e-06	-5.495079e+00	...	7	32224022	...	2.172292e-07
TCGA-97-8171-01A-11D-2284-08	86	79	7	62	8.139535e-02	exome+100bp flanks	2	35956486	...	17	52	72	4.727937e-07	1.446192e-06	2.002420e-06	-5.698445e+00	...	3	32224022	...	9.309825e-08
TCGA-97-8172-01A-11D-2284-08	325	316	9	247	2.769231e-02	coding only	1	28827915	...	65	220	307	2.254759e-06	7.631492e-06	1.064940e-05	-4.972675e+00	...	17	28771724	...	5.908579e-07
TCGA-97-8174-01A-11D-2284-08	217	208	9	161	4.147465e-02	exome+100bp flanks	2	35956486	...	44	142	194	1.223701e-06	3.949218e-06	5.395410e-06	-5.267976e+00	...	7	32224022	...	2.172292e-07
TCGA-97-8175-01A-11D-2284-08	62	55	7	40	1.129032e-01	exome+100bp flanks	2	35956486	...	14	36	53	3.893595e-07	1.001210e-06	1.474004e-06	-5.831501e+00	...	2	32224022	...	6.206550e-08
TCGA-97-8176-01A-11D-2393-08	203	187	16	140	7.881773e-02	exome+100bp flanks	2	35956486	...	45	125	177	1.251513e-06	3.476424e-06	4.922617e-06	-5.307804e+00	...	6	32224022	...	1.861965e-07
TCGA-97-8177-01A-11D-2284-08	89	81	8	57	8.988764e-02	exome+100bp flanks	2	35956486	...	23	51	79	6.396621e-07	1.418381e-06	2.197100e-06	-5.658150e+00	...	4	32224022	...	1.241310e-07
TCGA-97-8179-01A-11D-2284-08	215	202	13	162	6.046512e-02	exome+100bp flanks	2	35956486	...	38	136	192	1.056833e-06	3.782350e-06	5.339788e-06	-5.272476e+00	...	14	32224022	...	4.344585e-07
TCGA-97-8547-01A-11D-2393-08	86	84	2	64	2.325581e-02	coding only	1	28827915	...	19	56	81	6.590834e-07	1.942562e-06	2.809777e-06	-5.551328e+00	...	6	28771724	...	2.085381e-07
TCGA-97-8552-01A-11D-2393-08	39	33	6	28	1.538462e-01	exome+100bp flanks	2	35956486	...	5	24	33	1.390570e-07	6.674735e-07	9.177760e-07	-6.037263e+00	...	4	32224022	...	1.241310e-07
TCGA-97-A4LX-01A-11D-A24P-08	222	209	13	158	5.855856e-02	exome+100bp flanks	2	35956486	...	51	147	204	1.418381e-06	4.088275e-06	5.673524e-06	-5.246147e+00	...	5	32224022	...	1.551637e-07
TCGA-97-A4M0-01A-11D-A24P-08	470	452	18	347	3.829787e-02	exome+100bp flanks	2	35956486	...	100	314	431	2.781139e-06	8.732778e-06	1.198671e-05	-4.921300e+00	...	14	32224022	...	4.344585e-07
TCGA-97-A4M1-01A-11D-A24P-08	57	56	1	44	1.754386e-02	coding only	1	28827915	...	11	38	54	3.815746e-07	1.318167e-06	1.873184e-06	-5.727419e+00	...	4	28771724	...	1.390254e-07
TCGA-97-A4M2-01A-12D-A24P-08	43	39	4	33	9.302326e-02	exome+100bp flanks	2	35956486	...	6	27	37	1.668684e-07	7.509076e-07	1.029022e-06	-5.987576e+00	...	4	32224022	...	1.241310e-07
TCGA-97-A4M3-01A-11D-A24P-08	245	233	12	193	4.897959e-02	exome+100bp flanks	2	35956486	...	38	178	224	1.056833e-06	4.950428e-06	6.229752e-06	-5.205529e+00	...	6	32224022	...	1.861965e-07
TCGA-97-A4M5-01A-11D-A24P-08	190	182	8	145	4.210526e-02	exome+100bp flanks	2	35956486	...	34	137	173	9.455874e-07	3.810161e-06	4.811371e-06	-5.317731e+00	...	2	32224022	...	6.206550e-08
TCGA-97-A4M6-01A-11D-A24P-08	50	46	4	34	8.000000e-02	exome+100bp flanks	2	35956486	...	12	26	45	3.337367e-07	7.230962e-07	1.251513e-06	-5.902565e+00	...	5	32224022	...	1.551637e-07
TCGA-97-A4M7-01A-11D-A24P-08	382	372	10	283	2.617801e-02	coding only	1	28827915	...	87	250	354	3.017908e-06	8.672150e-06	1.227976e-05	-4.910810e+00	...	16	28771724	...	5.561015e-07
TCGA-99-7458-01A-11D-2036-08	571	558	13	434	2.276708e-02	coding only	1	28827915	...	121	386	537	4.197321e-06	1.338980e-05	1.862778e-05	-4.729839e+00	...	27	28771724	...	9.384213e-07
TCGA-99-8025-01A-11D-2238-08	601	578	23	447	3.826955e-02	exome+100bp flanks	2	35956486	...	126	410	558	3.504236e-06	1.140267e-05	1.551876e-05	-4.809143e+00	...	14	32224022	...	4.344585e-07
TCGA-99-8028-01A-11D-2238-08	654	640	14	494	2.140673e-02	coding only	1	28827915	...	142	456	613	4.925781e-06	1.581800e-05	2.126411e-05	-4.672353e+00	...	9	28771724	...	3.128071e-07
TCGA-99-8032-01A-11D-2238-08	531	514	17	401	3.201507e-02	exome+100bp flanks	2	35956486	...	111	357	498	3.087065e-06	9.928668e-06	1.385007e-05	-4.858548e+00	...	22	32224022	...	6.827205e-07
TCGA-99-8033-01A-11D-2238-08	234	229	5	178	2.136752e-02	coding only	1	28827915	...	50	159	220	1.734430e-06	5.515487e-06	7.631492e-06	-5.117391e+00	...	9	28771724	...	3.128071e-07
TCGA-J2-8192-01A-11D-2238-08	99	94	5	74	5.050505e-02	exome+100bp flanks	2	35956486	...	20	64	93	5.562279e-07	1.779929e-06	2.586460e-06	-5.587294e+00	...	6	32224022	...	1.861965e-07
TCGA-J2-8194-01A-11D-2238-08	208	198	10	151	4.807692e-02	exome+100bp flanks	2	35956486	...	46	140	194	1.279324e-06	3.893595e-06	5.395410e-06	-5.267976e+00	...	6	32224022	...	1.861965e-07
TCGA-J2-A4AD-01A-11D-A24D-08	398	391	7	299	1.758794e-02	coding only	1	28827915	...	88	271	372	3.052597e-06	9.400610e-06	1.290416e-05	-4.889270e+00	...	10	28771724	...	3.475635e-07
TCGA-J2-A4AE-01A-21D-A24D-08	67	63	4	45	5.970149e-02	exome+100bp flanks	2	35956486	...	17	37	57	4.727937e-07	1.029022e-06	1.585249e-06	-5.799902e+00	...	3	32224022	...	9.309825e-08
TCGA-J2-A4AG-01A-11D-A24D-08	124	112	12	83	9.677419e-02	exome+100bp flanks	2	35956486	...	28	74	107	7.787190e-07	2.058043e-06	2.975819e-06	-5.526393e+00	...	4	32224022	...	1.241310e-07
TCGA-L4-A4E5-01A-11D-A24P-08	405	385	20	296	4.938272e-02	exome+100bp flanks	2	35956486	...	89	265	365	2.475214e-06	7.370019e-06	1.015116e-05	-4.993484e+00	...	7	32224022	...	2.172292e-07
TCGA-L4-A4E6-01A-11D-A24D-08	25	22	3	12	1.200000e-01	exome+100bp flanks	2	35956486	...	9	9	21	2.503025e-07	2.503025e-07	5.840393e-07	-6.233558e+00	...	2	32224022	...	6.206550e-08
TCGA-L9-A443-01A-12D-A24D-08	290	285	5	235	1.724138e-02	coding only	1	28827915	...	49	208	267	1.699741e-06	7.215229e-06	9.261856e-06	-5.033302e+00	...	9	28771724	...	3.128071e-07
TCGA-L9-A444-01A-21D-A24D-08	681	657	24	500	3.524229e-02	exome+100bp flanks	2	35956486	...	153	451	632	4.255143e-06	1.254294e-05	1.757680e-05	-4.755060e+00	...	20	32224022	...	6.206550e-07
TCGA-MN-A4N1-01A-11D-A24P-08	558	535	23	418	4.121864e-02	exome+100bp flanks	2	35956486	...	111	386	516	3.087065e-06	1.073520e-05	1.435068e-05	-4.843128e+00	...	15	32224022	...	4.654912e-07
TCGA-MN-A4N4-01A-12D-A24P-08	1820	1747	73	1367	4.010989e-02	exome+100bp flanks	2	35956486	...	361	1262	1676	1.003991e-05	3.509798e-05	4.661190e-05	-4.331503e+00	...	41	32224022	...	1.272343e-06
TCGA-MN-A4N5-01A-11D-A24P-08	530	506	24	400	4.528302e-02	exome+100bp flanks	2	35956486	...	100	369	486	2.781139e-06	1.026240e-05	1.351634e-05	-4.869141e+00	...	14	32224022	...	4.344585e-07
TCGA-MP-A4SV-01A-11D-A24P-08	424	408	16	314	3.773585e-02	exome+100bp flanks	2	35956486	...	94	279	390	2.614271e-06	7.759379e-06	1.084644e-05	-4.964713e+00	...	12	32224022	...	3.723930e-07
TCGA-MP-A4SW-01A-21D-A24P-08	92	86	6	62	6.521739e-02	exome+100bp flanks	2	35956486	...	23	57	83	6.396621e-07	1.585249e-06	2.308346e-06	-5.636699e+00	...	3	32224022	...	9.309825e-08
TCGA-MP-A4SY-01A-21D-A24P-08	205	191	14	158	6.829268e-02	exome+100bp flanks	2	35956486	...	31	150	186	8.621532e-07	4.171709e-06	5.172919e-06	-5.286264e+00	...	2	32224022	...	6.206550e-08
TCGA-MP-A4T2-01A-11D-A24P-08	97	90	7	70	7.216495e-02	exome+100bp flanks	2	35956486	...	19	63	86	5.284165e-07	1.752118e-06	2.391780e-06	-5.621279e+00	...	2	32224022	...	6.206550e-08
TCGA-MP-A4T4-01A-11D-A25L-08	477	464	13	364	2.725367e-02	coding only	1	28827915	...	95	330	440	3.295417e-06	1.144724e-05	1.526298e-05	-4.816361e+00	...	14	28771724	...	4.865888e-07
TCGA-MP-A4T6-01A-32D-A25L-08	94	90	4	64	4.255319e-02	exome+100bp flanks	2	35956486	...	26	60	89	7.230962e-07	1.668684e-06	2.475214e-06	-5.606387e+00	...	2	32224022	...	6.206550e-08
TCGA-MP-A4T7-01A-11D-A24P-08	161	153	8	127	4.968944e-02	exome+100bp flanks	2	35956486	...	25	116	147	6.952849e-07	3.226122e-06	4.088275e-06	-5.388460e+00	...	4	32224022	...	1.241310e-07
TCGA-MP-A4T8-01A-11D-A24P-08	147	134	13	109	8.843537e-02	exome+100bp flanks	2	35956486	...	24	97	130	6.674735e-07	2.697705e-06	3.615481e-06	-5.441834e+00	...	6	32224022	...	1.861965e-07
TCGA-MP-A4T9-01A-11D-A24P-08	52	46	6	33	1.153846e-01	exome+100bp flanks	2	35956486	...	13	29	45	3.615481e-07	8.065304e-07	1.251513e-06	-5.902565e+00	...	2	32224022	...	6.206550e-08
TCGA-MP-A4TA-01A-21D-A24P-08	441	419	22	316	4.988662e-02	exome+100bp flanks	2	35956486	...	99	289	410	2.753328e-06	8.037493e-06	1.140267e-05	-4.942993e+00	...	14	32224022	...	4.344585e-07
TCGA-MP-A4TC-01A-11D-A24P-08	310	294	16	225	5.161290e-02	exome+100bp flanks	2	35956486	...	65	202	280	1.807741e-06	5.617902e-06	7.787190e-06	-5.108619e+00	...	10	32224022	...	3.103275e-07
TCGA-MP-A4TD-01A-32D-A25L-08	106	99	7	72	6.603774e-02	exome+100bp flanks	2	35956486	...	25	62	92	6.952849e-07	1.724306e-06	2.558648e-06	-5.591989e+00	...	5	32224022	...	1.551637e-07
TCGA-MP-A4TE-01A-22D-A25L-08	168	161	7	127	4.166667e-02	exome+100bp flanks	2	35956486	...	32	112	155	8.899646e-07	3.114876e-06	4.310766e-06	-5.365446e+00	...	7	32224022	...	2.172292e-07
TCGA-MP-A4TF-01A-11D-A25L-08	515	499	16	383	3.106796e-02	exome+100bp flanks	2	35956486	...	113	354	487	3.142688e-06	9.845233e-06	1.354415e-05	-4.868248e+00	...	14	32224022	...	4.344585e-07
TCGA-MP-A4TH-01A-31D-A25L-08	140	133	7	109	5.000000e-02	exome+100bp flanks	2	35956486	...	24	99	130	6.674735e-07	2.753328e-06	3.615481e-06	-5.441834e+00	...	6	32224022	...	1.861965e-07
TCGA-MP-A4TI-01A-21D-A24P-08	312	297	15	208	4.807692e-02	exome+100bp flanks	2	35956486	...	85	194	287	2.363968e-06	5.395410e-06	7.981870e-06	-5.097895e+00	...	3	32224022	...	9.309825e-08
TCGA-MP-A4TK-01A-11D-A24P-08	426	412	14	320	3.286385e-02	exome+100bp flanks	2	35956486	...	89	289	393	2.475214e-06	8.037493e-06	1.092988e-05	-4.961385e+00	...	12	32224022	...	3.723930e-07
TCGA-MP-A5C7-01A-11D-A25L-08	95	88	7	56	7.368421e-02	exome+100bp flanks	2	35956486	...	29	47	82	8.065304e-07	1.307136e-06	2.280534e-06	-5.641963e+00	...	5	32224022	...	1.551637e-07
TCGA-NJ-A4YF-01A-12D-A25L-08	734	697	37	548	5.040872e-02	exome+100bp flanks	2	35956486	...	145	495	670	4.032652e-06	1.376664e-05	1.863363e-05	-4.729702e+00	...	23	32224022	...	7.137532e-07
TCGA-NJ-A4YG-01A-22D-A25L-08	182	173	9	134	4.945055e-02	exome+100bp flanks	2	35956486	...	34	126	165	9.455874e-07	3.504236e-06	4.588880e-06	-5.338293e+00	...	4	32224022	...	1.241310e-07
TCGA-NJ-A4YI-01A-11D-A25L-08	533	514	19	391	3.564728e-02	exome+100bp flanks	2	35956486	...	116	359	495	3.226122e-06	9.984290e-06	1.376664e-05	-4.861172e+00	...	18	32224022	...	5.585895e-07
TCGA-NJ-A4YP-01A-11D-A25L-08	657	637	20	473	3.044140e-02	exome+100bp flanks	2	35956486	...	152	436	600	4.227332e-06	1.212577e-05	1.668684e-05	-4.777626e+00	...	8	32224022	...	2.482620e-07
TCGA-NJ-A4YQ-01A-11D-A25L-08	1356	1303	53	1012	3.908555e-02	exome+100bp flanks	2	35956486	...	279	922	1255	7.759379e-06	2.564211e-05	3.490330e-05	-4.457134e+00	...	40	32224022	...	1.241310e-06
TCGA-NJ-A55A-01A-11D-A25L-08	148	142	6	107	4.054054e-02	exome+100bp flanks	2	35956486	...	35	101	142	9.733988e-07	2.808951e-06	3.949218e-06	-5.403489e+00	...	3	32224022	...	9.309825e-08
TCGA-NJ-A55O-01A-11D-A25L-08	176	169	7	133	3.977273e-02	exome+100bp flanks	2	35956486	...	35	121	162	9.733988e-07	3.365179e-06	4.505446e-06	-5.346262e+00	...	5	32224022	...	1.551637e-07
TCGA-NJ-A55R-01A-11D-A25L-08	319	310	9	231	2.821317e-02	coding only	1	28827915	...	75	207	294	2.601645e-06	7.180540e-06	1.019845e-05	-4.991466e+00	...	9	28771724	...	3.128071e-07
TCGA-O1-A52J-01A-11D-A25L-08	217	208	9	159	4.147465e-02	exome+100bp flanks	2	35956486	...	45	139	196	1.251513e-06	3.865784e-06	5.451033e-06	-5.263521e+00	...	8	32224022	...	2.482620e-07
