name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-04-1331-01A-01W-0486-08	66	66	0	56	0	coding only	1	28825735	...	10	53	65	3.469122e-07	1.838635e-06	2.254929e-06	-5.646867e+00	...	2	28769549	...	6.951795e-08
TCGA-04-1332-01A-01W-0488-09	35	32	3	24	8.571429e-02	exome+100bp flanks	2	35956486	...	8	23	31	2.224912e-07	6.396621e-07	8.621532e-07	-6.064416e+00	...	0	32224022	...	0
TCGA-04-1336-01A-01W-0488-09	68	66	2	54	2.941176e-02	coding only	1	28825735	...	11	48	64	3.816035e-07	1.665179e-06	2.220238e-06	-5.653600e+00	...	5	28769549	...	1.737949e-07
TCGA-04-1337-01A-01W-0484-10	59	59	0	54	0	coding only	1	28825735	...	4	38	58	1.387649e-07	1.318266e-06	2.012091e-06	-5.696352e+00	...	16	28769549	...	5.561436e-07
TCGA-04-1338-01A-01W-0484-10	139	139	0	113	0	coding only	1	28825735	...	25	103	134	8.672806e-07	3.573196e-06	4.648624e-06	-5.332676e+00	...	6	28769549	...	2.085538e-07
TCGA-04-1342-01A-01W-0486-08	30	30	0	22	0	exome+100bp flanks	2	35956486	...	8	22	30	2.224912e-07	6.118507e-07	8.343418e-07	-6.078656e+00	...	0	32224022	...	0
TCGA-04-1343-01A-01W-0488-09	71	66	5	49	7.042254e-02	exome+100bp flanks	2	35956486	...	17	44	62	4.727937e-07	1.223701e-06	1.724306e-06	-5.763386e+00	...	1	32224022	...	3.103275e-08
TCGA-04-1346-01A-01W-0488-09	51	49	2	35	3.921569e-02	exome+100bp flanks	2	35956486	...	12	32	44	3.337367e-07	8.899646e-07	1.223701e-06	-5.912325e+00	...	0	32224022	...	0
TCGA-04-1347-01A-01W-0488-09	130	123	7	95	5.384615e-02	exome+100bp flanks	2	35956486	...	26	92	119	7.230962e-07	2.558648e-06	3.309556e-06	-5.480230e+00	...	1	32224022	...	3.103275e-08
TCGA-04-1348-01A-01W-0494-09	45	43	2	38	4.444444e-02	exome+100bp flanks	2	35956486	...	4	32	38	1.112456e-07	8.899646e-07	1.056833e-06	-5.975994e+00	...	2	32224022	...	6.206550e-08
TCGA-04-1349-01A-01W-0494-09	36	36	0	30	0	exome+100bp flanks	2	35956486	...	6	29	36	1.668684e-07	8.065304e-07	1.001210e-06	-5.999475e+00	...	1	32224022	...	3.103275e-08
TCGA-04-1350-01A-01W-0490-10	34	34	0	32	0	exome+100bp flanks	2	35956486	...	2	24	34	5.562279e-08	6.674735e-07	9.455874e-07	-6.024298e+00	...	8	32224022	...	2.482620e-07
TCGA-04-1353-01A-01D-1526-09	29	28	1	18	3.448276e-02	exome+100bp flanks	2	35956486	...	10	14	24	2.781139e-07	3.893595e-07	6.674735e-07	-6.175566e+00	...	0	32224022	...	0
TCGA-04-1356-01A-01W-0492-08	51	51	0	38	0	coding only	1	28825735	...	13	35	50	4.509859e-07	1.214193e-06	1.734561e-06	-5.760810e+00	...	2	28769549	...	6.951795e-08
TCGA-04-1357-01A-01W-0492-08	41	41	0	32	0	exome+100bp flanks	2	35956486	...	9	31	41	2.503025e-07	8.621532e-07	1.140267e-06	-5.942993e+00	...	1	32224022	...	3.103275e-08
TCGA-04-1361-01A-01W-0494-09	67	64	3	51	4.477612e-02	exome+100bp flanks	2	35956486	...	13	48	61	3.615481e-07	1.334947e-06	1.696495e-06	-5.770447e+00	...	0	32224022	...	0
TCGA-04-1362-01A-01W-0494-09	76	73	3	58	3.947368e-02	exome+100bp flanks	2	35956486	...	13	54	69	3.615481e-07	1.501815e-06	1.918986e-06	-5.716928e+00	...	2	32224022	...	6.206550e-08
TCGA-04-1364-01A-01W-0490-10	36	36	0	31	0	exome+100bp flanks	2	35956486	...	5	27	35	1.390570e-07	7.509076e-07	9.733988e-07	-6.011709e+00	...	3	32224022	...	9.309825e-08
TCGA-04-1365-01A-01W-0490-10	32	32	0	31	0	exome+100bp flanks	2	35956486	...	1	22	29	2.781139e-08	6.118507e-07	8.065304e-07	-6.093379e+00	...	6	32224022	...	1.861965e-07
TCGA-04-1367-01A-01W-0492-08	81	81	0	64	0	coding only	1	28825735	...	17	58	79	5.897508e-07	2.012091e-06	2.740607e-06	-5.562153e+00	...	4	28769549	...	1.390359e-07
TCGA-04-1369-01A-02D-1526-09	84	82	2	62	2.380952e-02	coding only	1	28825735	...	20	60	80	6.938245e-07	2.081473e-06	2.775298e-06	-5.556690e+00	...	0	28769549	...	0
TCGA-04-1514-01A-01W-0552-10	30	30	0	24	0	exome+100bp flanks	2	35956486	...	6	23	30	1.668684e-07	6.396621e-07	8.343418e-07	-6.078656e+00	...	1	32224022	...	3.103275e-08
TCGA-04-1516-01A-01D-1526-09	74	69	5	58	6.756757e-02	exome+100bp flanks	2	35956486	...	10	55	65	2.781139e-07	1.529627e-06	1.807741e-06	-5.742864e+00	...	0	32224022	...	0
TCGA-04-1517-01A-01W-0615-10	19	19	0	16	0	exome+100bp flanks	2	35956486	...	3	15	19	8.343418e-08	4.171709e-07	5.284165e-07	-6.277024e+00	...	1	32224022	...	3.103275e-08
TCGA-04-1519-01A-01W-0615-10	3	3	0	2	0	exome+100bp flanks	2	35956486	...	1	2	3	2.781139e-08	5.562279e-08	8.343418e-08	-7.078656e+00	...	0	32224022	...	0
TCGA-04-1525-01A-01W-0615-10	20	20	0	16	0	exome+100bp flanks	2	35956486	...	4	12	18	1.112456e-07	3.337367e-07	5.006051e-07	-6.300505e+00	...	2	32224022	...	6.206550e-08
TCGA-04-1530-01A-02W-0552-10	65	65	0	51	0	coding only	1	28825735	...	14	47	65	4.856771e-07	1.630487e-06	2.254929e-06	-5.646867e+00	...	4	28769549	...	1.390359e-07
TCGA-04-1542-01A-01W-0553-09	71	65	6	53	8.450704e-02	exome+100bp flanks	2	35956486	...	12	52	64	3.337367e-07	1.446192e-06	1.779929e-06	-5.749597e+00	...	0	32224022	...	0
TCGA-04-1638-01A-01W-0639-09	62	57	5	46	8.064516e-02	exome+100bp flanks	2	35956486	...	11	40	54	3.059253e-07	1.112456e-06	1.501815e-06	-5.823383e+00	...	2	32224022	...	6.206550e-08
TCGA-04-1644-01B-01D-1526-09	44	40	4	36	9.090909e-02	exome+100bp flanks	2	35956486	...	4	36	40	1.112456e-07	1.001210e-06	1.112456e-06	-5.953717e+00	...	0	32224022	...	0
TCGA-04-1646-01A-01W-0639-09	33	32	1	23	3.030303e-02	exome+100bp flanks	2	35956486	...	6	22	29	1.668684e-07	6.118507e-07	8.065304e-07	-6.093379e+00	...	1	32224022	...	3.103275e-08
TCGA-04-1648-01A-01W-0639-09	48	40	8	26	1.666667e-01	exome+100bp flanks	2	35956486	...	14	23	39	3.893595e-07	6.396621e-07	1.084644e-06	-5.964713e+00	...	2	32224022	...	6.206550e-08
TCGA-04-1649-01A-01W-0639-09	70	67	3	51	4.285714e-02	exome+100bp flanks	2	35956486	...	14	45	60	3.893595e-07	1.251513e-06	1.668684e-06	-5.777626e+00	...	1	32224022	...	3.103275e-08
TCGA-04-1651-01A-01W-0639-09	65	60	5	43	7.692308e-02	exome+100bp flanks	2	35956486	...	16	40	58	4.449823e-07	1.112456e-06	1.613061e-06	-5.792349e+00	...	2	32224022	...	6.206550e-08
TCGA-04-1652-01A-01W-0639-09	83	76	7	49	8.433735e-02	exome+100bp flanks	2	35956486	...	26	44	72	7.230962e-07	1.223701e-06	2.002420e-06	-5.698445e+00	...	2	32224022	...	6.206550e-08
TCGA-04-1655-01A-01W-0633-09	58	54	4	42	6.896552e-02	exome+100bp flanks	2	35956486	...	12	41	54	3.337367e-07	1.140267e-06	1.501815e-06	-5.823383e+00	...	1	32224022	...	3.103275e-08
TCGA-09-0364-01A-02W-0370-10	13	13	0	13	0	exome+100bp flanks	2	35956486	...	0	12	13	0	3.337367e-07	3.615481e-07	-6.441834e+00	...	1	32224022	...	3.103275e-08
TCGA-09-0366-01A-01W-0372-09	43	42	1	33	2.325581e-02	exome+100bp flanks	2	35956486	...	8	31	40	2.224912e-07	8.621532e-07	1.112456e-06	-5.953717e+00	...	1	32224022	...	3.103275e-08
TCGA-09-0369-01A-01W-0372-09	69	62	7	54	1.014493e-01	exome+100bp flanks	2	35956486	...	8	53	61	2.224912e-07	1.474004e-06	1.696495e-06	-5.770447e+00	...	0	32224022	...	0
TCGA-09-1659-01B-01W-0615-10	17	17	0	13	0	exome+100bp flanks	2	35956486	...	4	13	17	1.112456e-07	3.615481e-07	4.727937e-07	-6.325328e+00	...	0	32224022	...	0
TCGA-09-1661-01B-01W-0615-10	38	38	0	34	0	exome+100bp flanks	2	35956486	...	4	32	38	1.112456e-07	8.899646e-07	1.056833e-06	-5.975994e+00	...	2	32224022	...	6.206550e-08
TCGA-09-1662-01A-01W-0615-10	34	34	0	27	0	exome+100bp flanks	2	35956486	...	7	26	34	1.946798e-07	7.230962e-07	9.455874e-07	-6.024298e+00	...	1	32224022	...	3.103275e-08
TCGA-09-1664-01A-01W-0639-09	18	17	1	12	5.555556e-02	exome+100bp flanks	2	35956486	...	4	11	16	1.112456e-07	3.059253e-07	4.449823e-07	-6.351657e+00	...	1	32224022	...	3.103275e-08
TCGA-09-1665-01B-01W-0615-10	95	95	0	67	0	coding only	1	28825735	...	28	64	94	9.713542e-07	2.220238e-06	3.260975e-06	-5.486653e+00	...	2	28769549	...	6.951795e-08
TCGA-09-1666-01A-01W-0615-10	18	18	0	16	0	exome+100bp flanks	2	35956486	...	2	16	18	5.562279e-08	4.449823e-07	5.006051e-07	-6.300505e+00	...	0	32224022	...	0
TCGA-09-1669-01A-01W-0615-10	50	50	0	40	0	coding only	1	28825735	...	10	38	49	3.469122e-07	1.318266e-06	1.699870e-06	-5.769584e+00	...	1	28769549	...	3.475897e-08
TCGA-09-1670-01A-01W-0633-09	32	31	1	26	3.125000e-02	exome+100bp flanks	2	35956486	...	4	23	28	1.112456e-07	6.396621e-07	7.787190e-07	-6.108619e+00	...	1	32224022	...	3.103275e-08
TCGA-09-1672-01A-01W-0633-09	22	22	0	18	0	exome+100bp flanks	2	35956486	...	4	13	20	1.112456e-07	3.615481e-07	5.562279e-07	-6.254747e+00	...	3	32224022	...	9.309825e-08
TCGA-09-1673-01A-01W-0633-09	47	46	1	38	2.127660e-02	exome+100bp flanks	2	35956486	...	8	34	44	2.224912e-07	9.455874e-07	1.223701e-06	-5.912325e+00	...	2	32224022	...	6.206550e-08
TCGA-09-1674-01A-01W-0633-09	132	126	6	101	4.545455e-02	exome+100bp flanks	2	35956486	...	23	90	119	6.396621e-07	2.503025e-06	3.309556e-06	-5.480230e+00	...	6	32224022	...	1.861965e-07
TCGA-09-1675-01B-01W-0633-09	70	65	5	50	7.142857e-02	exome+100bp flanks	2	35956486	...	14	43	62	3.893595e-07	1.195890e-06	1.724306e-06	-5.763386e+00	...	5	32224022	...	1.551637e-07
TCGA-09-2044-01B-01W-0799-08	89	89	0	71	0	coding only	1	28825735	...	18	62	86	6.244420e-07	2.150856e-06	2.983445e-06	-5.525282e+00	...	6	28769549	...	2.085538e-07
TCGA-09-2045-01A-01W-0799-08	34	34	0	28	0	exome+100bp flanks	2	35956486	...	6	28	34	1.668684e-07	7.787190e-07	9.455874e-07	-6.024298e+00	...	0	32224022	...	0
TCGA-09-2049-01D-01W-0799-08	119	119	0	93	0	coding only	1	28825735	...	26	89	118	9.019718e-07	3.087519e-06	4.093564e-06	-5.387898e+00	...	3	28769549	...	1.042769e-07
TCGA-09-2050-01A-01W-0799-08	111	111	0	85	0	coding only	1	28825735	...	25	77	110	8.672806e-07	2.671224e-06	3.816035e-06	-5.418388e+00	...	8	28769549	...	2.780718e-07
TCGA-09-2051-01A-01W-0799-08	4	4	0	4	0	exome+100bp flanks	2	35956486	...	0	4	4	0	1.112456e-07	1.112456e-07	-6.953717e+00	...	0	32224022	...	0
TCGA-09-2053-01C-01W-0722-08	36	36	0	24	0	exome+100bp flanks	2	35956486	...	12	24	36	3.337367e-07	6.674735e-07	1.001210e-06	-5.999475e+00	...	0	32224022	...	0
TCGA-09-2056-01B-01W-0722-08	71	71	0	62	0	coding only	1	28825735	...	9	59	71	3.122210e-07	2.046782e-06	2.463077e-06	-5.608522e+00	...	3	28769549	...	1.042769e-07
TCGA-10-0926-01A-01W-0420-08	39	39	0	29	0	exome+100bp flanks	2	35956486	...	10	29	39	2.781139e-07	8.065304e-07	1.084644e-06	-5.964713e+00	...	0	32224022	...	0
TCGA-10-0927-01A-02W-0419-10	26	26	0	20	0	exome+100bp flanks	2	35956486	...	6	18	26	1.668684e-07	5.006051e-07	7.230962e-07	-6.140804e+00	...	2	32224022	...	6.206550e-08
TCGA-10-0928-01A-02W-0419-10	43	43	0	34	0	exome+100bp flanks	2	35956486	...	9	30	41	2.503025e-07	8.343418e-07	1.140267e-06	-5.942993e+00	...	2	32224022	...	6.206550e-08
TCGA-10-0930-01A-02W-0421-09	173	166	7	133	4.046243e-02	exome+100bp flanks	2	35956486	...	30	118	156	8.343418e-07	3.281744e-06	4.338577e-06	-5.362653e+00	...	7	32224022	...	2.172292e-07
TCGA-10-0931-01A-01W-0420-08	26	26	0	21	0	exome+100bp flanks	2	35956486	...	5	21	26	1.390570e-07	5.840393e-07	7.230962e-07	-6.140804e+00	...	0	32224022	...	0
TCGA-10-0933-01A-01W-0421-09	45	42	3	33	6.666667e-02	exome+100bp flanks	2	35956486	...	8	30	40	2.224912e-07	8.343418e-07	1.112456e-06	-5.953717e+00	...	2	32224022	...	6.206550e-08
TCGA-10-0934-01A-02W-0420-08	17	17	0	13	0	exome+100bp flanks	2	35956486	...	4	13	17	1.112456e-07	3.615481e-07	4.727937e-07	-6.325328e+00	...	0	32224022	...	0
TCGA-10-0935-01A-03W-0421-09	49	47	2	39	4.081633e-02	exome+100bp flanks	2	35956486	...	8	38	46	2.224912e-07	1.056833e-06	1.279324e-06	-5.893019e+00	...	0	32224022	...	0
TCGA-10-0937-01A-02W-0419-10	40	40	0	32	0	exome+100bp flanks	2	35956486	...	8	32	40	2.224912e-07	8.899646e-07	1.112456e-06	-5.953717e+00	...	0	32224022	...	0
TCGA-10-0938-01A-02W-0419-10	55	55	0	42	0	coding only	1	28825735	...	13	35	54	4.509859e-07	1.214193e-06	1.873326e-06	-5.727387e+00	...	6	28769549	...	2.085538e-07
TCGA-13-0714-01A-01W-0370-10	67	67	0	59	0	coding only	1	28825735	...	6	55	65	2.081473e-07	1.908017e-06	2.254929e-06	-5.646867e+00	...	4	28769549	...	1.390359e-07
TCGA-13-0717-01A-01W-0370-10	35	35	0	31	0	exome+100bp flanks	2	35956486	...	3	27	33	8.343418e-08	7.509076e-07	9.177760e-07	-6.037263e+00	...	3	32224022	...	9.309825e-08
TCGA-13-0720-01A-01W-0370-10	55	55	0	43	0	coding only	1	28825735	...	12	38	55	4.162947e-07	1.318266e-06	1.908017e-06	-5.719418e+00	...	5	28769549	...	1.737949e-07
TCGA-13-0723-01A-02W-0372-09	50	45	5	36	1.000000e-01	exome+100bp flanks	2	35956486	...	9	33	43	2.503025e-07	9.177760e-07	1.195890e-06	-5.922309e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0724-01A-01W-0372-09	48	46	2	37	4.166667e-02	exome+100bp flanks	2	35956486	...	8	33	43	2.224912e-07	9.177760e-07	1.195890e-06	-5.922309e+00	...	2	32224022	...	6.206550e-08
TCGA-13-0726-01A-01W-0372-09	71	69	2	58	2.816901e-02	coding only	1	28825735	...	11	56	68	3.816035e-07	1.942708e-06	2.359003e-06	-5.627271e+00	...	1	28769549	...	3.475897e-08
TCGA-13-0727-01A-01W-0370-10	28	28	0	19	0	exome+100bp flanks	2	35956486	...	8	18	27	2.224912e-07	5.006051e-07	7.509076e-07	-6.124413e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0730-01A-01W-0370-10	37	37	0	26	0	exome+100bp flanks	2	35956486	...	10	23	36	2.781139e-07	6.396621e-07	1.001210e-06	-5.999475e+00	...	3	32224022	...	9.309825e-08
TCGA-13-0751-01A-01D-0446-08	31	31	0	20	0	exome+100bp flanks	2	35956486	...	11	18	31	3.059253e-07	5.006051e-07	8.621532e-07	-6.064416e+00	...	2	32224022	...	6.206550e-08
TCGA-13-0755-01A-01W-0372-09	101	98	3	75	2.970297e-02	coding only	1	28825735	...	22	68	95	7.632069e-07	2.359003e-06	3.295666e-06	-5.482057e+00	...	5	28769549	...	1.737949e-07
TCGA-13-0760-01A-01W-0372-09	201	192	9	153	4.477612e-02	exome+100bp flanks	2	35956486	...	38	143	186	1.056833e-06	3.977029e-06	5.172919e-06	-5.286264e+00	...	5	32224022	...	1.551637e-07
TCGA-13-0761-01A-01W-0370-10	54	54	0	45	0	coding only	1	28825735	...	9	40	53	3.122210e-07	1.387649e-06	1.838635e-06	-5.735505e+00	...	4	28769549	...	1.390359e-07
TCGA-13-0762-01A-01W-0370-10	66	66	0	58	0	coding only	1	28825735	...	8	56	66	2.775298e-07	1.942708e-06	2.289621e-06	-5.640236e+00	...	2	28769549	...	6.951795e-08
TCGA-13-0765-01A-01W-0372-09	30	28	2	22	6.666667e-02	exome+100bp flanks	2	35956486	...	6	18	26	1.668684e-07	5.006051e-07	7.230962e-07	-6.140804e+00	...	2	32224022	...	6.206550e-08
TCGA-13-0791-01A-01W-0372-09	82	77	5	61	6.097561e-02	exome+100bp flanks	2	35956486	...	16	54	73	4.449823e-07	1.501815e-06	2.030232e-06	-5.692454e+00	...	3	32224022	...	9.309825e-08
TCGA-13-0792-01A-01W-0370-10	65	65	0	58	0	coding only	1	28825735	...	7	48	63	2.428386e-07	1.665179e-06	2.185547e-06	-5.660440e+00	...	8	28769549	...	2.780718e-07
TCGA-13-0793-01A-01W-0370-10	64	64	0	47	0	coding only	1	28825735	...	15	37	58	5.203683e-07	1.283575e-06	2.012091e-06	-5.696352e+00	...	6	28769549	...	2.085538e-07
TCGA-13-0795-01A-01W-0372-09	73	71	2	55	2.739726e-02	coding only	1	28825735	...	16	52	69	5.550596e-07	1.803944e-06	2.393694e-06	-5.620931e+00	...	1	28769549	...	3.475897e-08
TCGA-13-0800-01A-01W-0372-09	55	53	2	40	3.636364e-02	exome+100bp flanks	2	35956486	...	12	37	49	3.337367e-07	1.029022e-06	1.362758e-06	-5.865581e+00	...	0	32224022	...	0
TCGA-13-0801-01A-01W-0370-10	19	19	0	19	0	exome+100bp flanks	2	35956486	...	0	18	18	0	5.006051e-07	5.006051e-07	-6.300505e+00	...	0	32224022	...	0
TCGA-13-0802-01A-01W-0370-10	8	8	0	8	0	exome+100bp flanks	2	35956486	...	0	8	8	0	2.224912e-07	2.224912e-07	-6.652687e+00	...	0	32224022	...	0
TCGA-13-0804-01A-01W-0372-09	44	41	3	31	6.818182e-02	exome+100bp flanks	2	35956486	...	9	27	38	2.503025e-07	7.509076e-07	1.056833e-06	-5.975994e+00	...	2	32224022	...	6.206550e-08
TCGA-13-0807-01B-02W-0421-09	64	62	2	49	3.125000e-02	exome+100bp flanks	2	35956486	...	11	48	59	3.059253e-07	1.334947e-06	1.640872e-06	-5.784925e+00	...	0	32224022	...	0
TCGA-13-0883-01A-02W-0420-08	56	56	0	47	0	coding only	1	28825735	...	9	46	56	3.122210e-07	1.595796e-06	1.942708e-06	-5.711592e+00	...	1	28769549	...	3.475897e-08
TCGA-13-0884-01B-01W-0494-09	99	96	3	78	3.030303e-02	exome+100bp flanks	2	35956486	...	17	74	92	4.727937e-07	2.058043e-06	2.558648e-06	-5.591989e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0885-01A-02W-0421-09	178	172	6	129	3.370787e-02	exome+100bp flanks	2	35956486	...	41	121	164	1.140267e-06	3.365179e-06	4.561069e-06	-5.340933e+00	...	2	32224022	...	6.206550e-08
TCGA-13-0886-01A-01W-0420-08	49	49	0	37	0	exome+100bp flanks	2	35956486	...	12	37	49	3.337367e-07	1.029022e-06	1.362758e-06	-5.865581e+00	...	0	32224022	...	0
TCGA-13-0887-01A-01W-0421-09	119	112	7	85	5.882353e-02	exome+100bp flanks	2	35956486	...	27	78	106	7.509076e-07	2.169289e-06	2.948008e-06	-5.530471e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0889-01A-01W-0419-10	27	27	0	25	0	exome+100bp flanks	2	35956486	...	2	24	26	5.562279e-08	6.674735e-07	7.230962e-07	-6.140804e+00	...	0	32224022	...	0
TCGA-13-0890-01A-01W-0421-09	70	64	6	52	8.571429e-02	exome+100bp flanks	2	35956486	...	11	47	60	3.059253e-07	1.307136e-06	1.668684e-06	-5.777626e+00	...	2	32224022	...	6.206550e-08
TCGA-13-0891-01A-01W-0420-08	24	24	0	19	0	exome+100bp flanks	2	35956486	...	5	17	23	1.390570e-07	4.727937e-07	6.396621e-07	-6.194049e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0893-01B-01W-0494-09	83	78	5	59	6.024096e-02	exome+100bp flanks	2	35956486	...	19	56	76	5.284165e-07	1.557438e-06	2.113666e-06	-5.674964e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0894-01B-01W-0494-09	62	58	4	47	6.451613e-02	exome+100bp flanks	2	35956486	...	10	47	57	2.781139e-07	1.307136e-06	1.585249e-06	-5.799902e+00	...	0	32224022	...	0
TCGA-13-0897-01A-01W-0421-09	55	54	1	41	1.818182e-02	coding only	1	28825735	...	13	36	52	4.509859e-07	1.248884e-06	1.803944e-06	-5.743777e+00	...	3	28769549	...	1.042769e-07
TCGA-13-0899-01A-01W-0420-08	28	28	0	20	0	exome+100bp flanks	2	35956486	...	8	20	28	2.224912e-07	5.562279e-07	7.787190e-07	-6.108619e+00	...	0	32224022	...	0
TCGA-13-0900-01B-01W-0490-10	99	99	0	89	0	coding only	1	28825735	...	10	80	97	3.469122e-07	2.775298e-06	3.365049e-06	-5.473009e+00	...	7	28769549	...	2.433128e-07
TCGA-13-0901-01B-01W-0490-10	3	3	0	3	0	exome+100bp flanks	2	35956486	...	0	2	2	0	5.562279e-08	5.562279e-08	-7.254747e+00	...	0	32224022	...	0
TCGA-13-0903-01A-01W-0421-09	66	65	1	54	1.515152e-02	coding only	1	28825735	...	9	52	61	3.122210e-07	1.803944e-06	2.116165e-06	-5.674451e+00	...	0	28769549	...	0
TCGA-13-0904-01A-02W-0420-08	100	100	0	72	0	coding only	1	28825735	...	27	70	98	9.366630e-07	2.428386e-06	3.399740e-06	-5.468554e+00	...	1	28769549	...	3.475897e-08
TCGA-13-0905-01B-01W-0492-08	61	61	0	43	0	coding only	1	28825735	...	18	43	61	6.244420e-07	1.491723e-06	2.116165e-06	-5.674451e+00	...	0	28769549	...	0
TCGA-13-0906-01A-01W-0419-10	97	97	0	83	0	coding only	1	28825735	...	14	65	94	4.856771e-07	2.254929e-06	3.260975e-06	-5.486653e+00	...	15	28769549	...	5.213846e-07
TCGA-13-0910-01A-01W-0421-09	31	28	3	22	9.677419e-02	exome+100bp flanks	2	35956486	...	6	21	27	1.668684e-07	5.840393e-07	7.509076e-07	-6.124413e+00	...	0	32224022	...	0
TCGA-13-0911-01A-01W-0420-08	21	21	0	17	0	exome+100bp flanks	2	35956486	...	4	16	21	1.112456e-07	4.449823e-07	5.840393e-07	-6.233558e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0912-01A-01W-0421-09	38	36	2	26	5.263158e-02	exome+100bp flanks	2	35956486	...	10	24	35	2.781139e-07	6.674735e-07	9.733988e-07	-6.011709e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0913-01A-01W-0420-08	80	80	0	61	0	coding only	1	28825735	...	19	52	80	6.591332e-07	1.803944e-06	2.775298e-06	-5.556690e+00	...	9	28769549	...	3.128308e-07
TCGA-13-0916-01A-01W-0420-08	67	67	0	54	0	coding only	1	28825735	...	13	50	65	4.509859e-07	1.734561e-06	2.254929e-06	-5.646867e+00	...	2	28769549	...	6.951795e-08
TCGA-13-0919-01A-01W-0419-10	59	59	0	48	0	coding only	1	28825735	...	11	38	58	3.816035e-07	1.318266e-06	2.012091e-06	-5.696352e+00	...	9	28769549	...	3.128308e-07
TCGA-13-0920-01A-01W-0421-09	128	120	8	88	6.250000e-02	exome+100bp flanks	2	35956486	...	31	83	115	8.621532e-07	2.308346e-06	3.198310e-06	-5.495079e+00	...	1	32224022	...	3.103275e-08
TCGA-13-0923-01A-01W-0420-08	117	117	0	101	0	coding only	1	28825735	...	16	99	117	5.550596e-07	3.434431e-06	4.058873e-06	-5.391595e+00	...	2	28769549	...	6.951795e-08
TCGA-13-0924-01A-01W-0421-09	68	67	1	56	1.470588e-02	coding only	1	28825735	...	11	54	67	3.816035e-07	1.873326e-06	2.324312e-06	-5.633706e+00	...	2	28769549	...	6.951795e-08
TCGA-13-1403-01A-01W-0494-09	53	53	0	46	0	coding only	1	28825735	...	7	44	52	2.428386e-07	1.526414e-06	1.803944e-06	-5.743777e+00	...	1	28769549	...	3.475897e-08
TCGA-13-1404-01A-01W-0494-09	62	56	6	47	9.677419e-02	exome+100bp flanks	2	35956486	...	9	42	54	2.503025e-07	1.168079e-06	1.501815e-06	-5.823383e+00	...	3	32224022	...	9.309825e-08
TCGA-13-1405-01A-01W-0494-09	38	34	4	26	1.052632e-01	exome+100bp flanks	2	35956486	...	8	24	33	2.224912e-07	6.674735e-07	9.177760e-07	-6.037263e+00	...	1	32224022	...	3.103275e-08
TCGA-13-1407-01A-01W-0490-10	30	30	0	22	0	exome+100bp flanks	2	35956486	...	8	17	30	2.224912e-07	4.727937e-07	8.343418e-07	-6.078656e+00	...	5	32224022	...	1.551637e-07
TCGA-13-1408-01A-01W-0490-10	80	80	0	76	0	coding only	1	28825735	...	4	45	78	1.387649e-07	1.561105e-06	2.705915e-06	-5.567686e+00	...	29	28769549	...	1.008010e-06
TCGA-13-1409-01A-01W-0492-08	49	49	0	37	0	exome+100bp flanks	2	35956486	...	12	37	49	3.337367e-07	1.029022e-06	1.362758e-06	-5.865581e+00	...	0	32224022	...	0
TCGA-13-1410-01A-01W-0492-08	58	58	0	48	0	coding only	1	28825735	...	10	46	58	3.469122e-07	1.595796e-06	2.012091e-06	-5.696352e+00	...	2	28769549	...	6.951795e-08
TCGA-13-1411-01A-01W-0494-09	53	52	1	37	1.886792e-02	coding only	1	28825735	...	15	35	50	5.203683e-07	1.214193e-06	1.734561e-06	-5.760810e+00	...	0	28769549	...	0
TCGA-13-1412-01A-01W-0494-09	39	39	0	28	0	exome+100bp flanks	2	35956486	...	10	27	38	2.781139e-07	7.509076e-07	1.056833e-06	-5.975994e+00	...	1	32224022	...	3.103275e-08
TCGA-13-1477-01A-01D-0472-08	5	5	0	4	0	exome+100bp flanks	2	35956486	...	1	4	5	2.781139e-08	1.112456e-07	1.390570e-07	-6.856807e+00	...	0	32224022	...	0
TCGA-13-1481-01A-01W-0549-09	116	112	4	89	3.448276e-02	exome+100bp flanks	2	35956486	...	23	80	108	6.396621e-07	2.224912e-06	3.003631e-06	-5.522353e+00	...	5	32224022	...	1.551637e-07
TCGA-13-1482-01A-01W-0549-09	71	67	4	52	5.633803e-02	exome+100bp flanks	2	35956486	...	12	44	58	3.337367e-07	1.223701e-06	1.613061e-06	-5.792349e+00	...	2	32224022	...	6.206550e-08
TCGA-13-1483-01A-01W-0549-09	67	61	6	50	8.955224e-02	exome+100bp flanks	2	35956486	...	11	44	57	3.059253e-07	1.223701e-06	1.585249e-06	-5.799902e+00	...	2	32224022	...	6.206550e-08
TCGA-13-1484-01A-01W-0545-08	37	37	0	28	0	exome+100bp flanks	2	35956486	...	9	27	36	2.503025e-07	7.509076e-07	1.001210e-06	-5.999475e+00	...	0	32224022	...	0
TCGA-13-1487-01A-01D-0472-08	36	36	0	24	0	exome+100bp flanks	2	35956486	...	12	24	36	3.337367e-07	6.674735e-07	1.001210e-06	-5.999475e+00	...	0	32224022	...	0
TCGA-13-1488-01A-01W-0549-09	130	125	5	96	3.846154e-02	exome+100bp flanks	2	35956486	...	27	88	117	7.509076e-07	2.447403e-06	3.253933e-06	-5.487591e+00	...	1	32224022	...	3.103275e-08
TCGA-13-1489-01A-01W-0549-09	60	59	1	46	1.666667e-02	coding only	1	28825735	...	13	40	56	4.509859e-07	1.387649e-06	1.942708e-06	-5.711592e+00	...	3	28769549	...	1.042769e-07
TCGA-13-1491-01A-01W-0549-09	47	44	3	33	6.382979e-02	exome+100bp flanks	2	35956486	...	11	30	42	3.059253e-07	8.343418e-07	1.168079e-06	-5.932528e+00	...	1	32224022	...	3.103275e-08
TCGA-13-1492-01A-01D-0472-08	39	39	0	28	0	exome+100bp flanks	2	35956486	...	11	23	39	3.059253e-07	6.396621e-07	1.084644e-06	-5.964713e+00	...	5	32224022	...	1.551637e-07
TCGA-13-1494-01A-01W-0545-08	11	11	0	8	0	exome+100bp flanks	2	35956486	...	3	8	11	8.343418e-08	2.224912e-07	3.059253e-07	-6.514385e+00	...	0	32224022	...	0
TCGA-13-1495-01A-01W-0545-08	35	35	0	25	0	exome+100bp flanks	2	35956486	...	9	22	32	2.503025e-07	6.118507e-07	8.899646e-07	-6.050627e+00	...	1	32224022	...	3.103275e-08
TCGA-13-1496-01A-01W-0545-08	59	59	0	44	0	coding only	1	28825735	...	15	43	59	5.203683e-07	1.491723e-06	2.046782e-06	-5.688928e+00	...	1	28769549	...	3.475897e-08
TCGA-13-1497-01A-01W-0549-09	147	143	4	115	2.721088e-02	coding only	1	28825735	...	28	106	138	9.713542e-07	3.677270e-06	4.787389e-06	-5.319901e+00	...	4	28769549	...	1.390359e-07
TCGA-13-1498-01A-01W-0549-09	123	123	0	88	0	coding only	1	28825735	...	35	79	119	1.214193e-06	2.740607e-06	4.128256e-06	-5.384233e+00	...	5	28769549	...	1.737949e-07
TCGA-13-1499-01A-01W-0549-09	75	69	6	51	8.000000e-02	exome+100bp flanks	2	35956486	...	17	50	67	4.727937e-07	1.390570e-06	1.863363e-06	-5.729702e+00	...	0	32224022	...	0
TCGA-13-1501-01A-01W-0545-08	68	68	0	57	0	coding only	1	28825735	...	11	56	68	3.816035e-07	1.942708e-06	2.359003e-06	-5.627271e+00	...	1	28769549	...	3.475897e-08
TCGA-13-1504-01A-01W-0545-08	34	34	0	27	0	exome+100bp flanks	2	35956486	...	7	26	34	1.946798e-07	7.230962e-07	9.455874e-07	-6.024298e+00	...	1	32224022	...	3.103275e-08
TCGA-13-1505-01A-01D-0472-08	50	50	0	35	0	coding only	1	28825735	...	15	32	50	5.203683e-07	1.110119e-06	1.734561e-06	-5.760810e+00	...	3	28769549	...	1.042769e-07
TCGA-13-1506-01A-01W-0549-09	27	25	2	21	7.407407e-02	exome+100bp flanks	2	35956486	...	3	20	23	8.343418e-08	5.562279e-07	6.396621e-07	-6.194049e+00	...	0	32224022	...	0
TCGA-13-1507-01A-01W-0549-09	95	94	1	76	1.052632e-02	coding only	1	28825735	...	18	71	91	6.244420e-07	2.463077e-06	3.156901e-06	-5.500739e+00	...	2	28769549	...	6.951795e-08
TCGA-13-1509-01A-01W-0549-09	99	93	6	74	6.060606e-02	exome+100bp flanks	2	35956486	...	18	64	88	5.006051e-07	1.779929e-06	2.447403e-06	-5.611295e+00	...	5	32224022	...	1.551637e-07
TCGA-13-1510-01A-02D-0472-08	22	22	0	17	0	exome+100bp flanks	2	35956486	...	5	16	21	1.390570e-07	4.449823e-07	5.840393e-07	-6.233558e+00	...	0	32224022	...	0
TCGA-13-1512-01A-01W-0545-08	55	55	0	41	0	coding only	1	28825735	...	14	40	54	4.856771e-07	1.387649e-06	1.873326e-06	-5.727387e+00	...	0	28769549	...	0
TCGA-13-2057-01A-02D-1526-09	164	156	8	118	4.878049e-02	exome+100bp flanks	2	35956486	...	35	108	143	9.733988e-07	3.003631e-06	3.977029e-06	-5.400441e+00	...	0	32224022	...	0
TCGA-13-2059-01A-01D-1526-09	85	82	3	61	3.529412e-02	exome+100bp flanks	2	35956486	...	20	59	79	5.562279e-07	1.640872e-06	2.197100e-06	-5.658150e+00	...	0	32224022	...	0
TCGA-13-2060-01A-01W-0799-08	42	42	0	34	0	exome+100bp flanks	2	35956486	...	8	34	42	2.224912e-07	9.455874e-07	1.168079e-06	-5.932528e+00	...	0	32224022	...	0
TCGA-13-2061-01A-01D-1526-09	98	94	4	69	4.081633e-02	exome+100bp flanks	2	35956486	...	23	65	88	6.396621e-07	1.807741e-06	2.447403e-06	-5.611295e+00	...	0	32224022	...	0
TCGA-13-2065-01A-01D-1526-09	60	59	1	44	1.666667e-02	coding only	1	28825735	...	14	40	54	4.856771e-07	1.387649e-06	1.873326e-06	-5.727387e+00	...	0	28769549	...	0
TCGA-13-2066-01A-01D-1526-09	59	52	7	43	1.186441e-01	exome+100bp flanks	2	35956486	...	9	40	49	2.503025e-07	1.112456e-06	1.362758e-06	-5.865581e+00	...	0	32224022	...	0
TCGA-13-2071-01A-02D-1526-09	61	59	2	42	3.278689e-02	exome+100bp flanks	2	35956486	...	15	36	56	4.171709e-07	1.001210e-06	1.557438e-06	-5.807589e+00	...	5	32224022	...	1.551637e-07
TCGA-20-0987-01A-02W-0486-08	22	22	0	15	0	exome+100bp flanks	2	35956486	...	7	13	21	1.946798e-07	3.615481e-07	5.840393e-07	-6.233558e+00	...	1	32224022	...	3.103275e-08
TCGA-20-0990-01A-01W-0486-08	70	70	0	58	0	coding only	1	28825735	...	12	57	69	4.162947e-07	1.977400e-06	2.393694e-06	-5.620931e+00	...	0	28769549	...	0
TCGA-20-0991-01A-03D-0428-08	67	67	0	46	0	coding only	1	28825735	...	21	45	67	7.285157e-07	1.561105e-06	2.324312e-06	-5.633706e+00	...	1	28769549	...	3.475897e-08
TCGA-20-1682-01A-01W-0633-09	88	83	5	68	5.681818e-02	exome+100bp flanks	2	35956486	...	15	60	80	4.171709e-07	1.668684e-06	2.224912e-06	-5.652687e+00	...	5	32224022	...	1.551637e-07
TCGA-20-1683-01A-01W-0633-09	93	87	6	65	6.451613e-02	exome+100bp flanks	2	35956486	...	22	60	82	6.118507e-07	1.668684e-06	2.280534e-06	-5.641963e+00	...	0	32224022	...	0
TCGA-20-1684-01A-01W-0633-09	43	40	3	29	6.976744e-02	exome+100bp flanks	2	35956486	...	10	24	36	2.781139e-07	6.674735e-07	1.001210e-06	-5.999475e+00	...	2	32224022	...	6.206550e-08
TCGA-20-1685-01A-01W-0633-09	69	65	4	48	5.797101e-02	exome+100bp flanks	2	35956486	...	16	42	58	4.449823e-07	1.168079e-06	1.613061e-06	-5.792349e+00	...	0	32224022	...	0
TCGA-20-1686-01A-01W-0633-09	86	82	4	64	4.651163e-02	exome+100bp flanks	2	35956486	...	17	56	78	4.727937e-07	1.557438e-06	2.169289e-06	-5.663683e+00	...	5	32224022	...	1.551637e-07
TCGA-20-1687-01A-01W-0633-09	81	77	4	56	4.938272e-02	exome+100bp flanks	2	35956486	...	19	48	69	5.284165e-07	1.334947e-06	1.918986e-06	-5.716928e+00	...	2	32224022	...	6.206550e-08
TCGA-23-1021-01B-01W-0488-09	95	89	6	69	6.315789e-02	exome+100bp flanks	2	35956486	...	20	62	84	5.562279e-07	1.724306e-06	2.336157e-06	-5.631498e+00	...	2	32224022	...	6.206550e-08
TCGA-23-1022-01A-02W-0488-09	208	198	10	164	4.807692e-02	exome+100bp flanks	2	35956486	...	31	152	187	8.621532e-07	4.227332e-06	5.200731e-06	-5.283936e+00	...	4	32224022	...	1.241310e-07
TCGA-23-1023-01A-03W-0484-10	41	41	0	31	0	exome+100bp flanks	2	35956486	...	10	29	41	2.781139e-07	8.065304e-07	1.140267e-06	-5.942993e+00	...	2	32224022	...	6.206550e-08
TCGA-23-1024-01A-02W-0484-10	38	38	0	29	0	exome+100bp flanks	2	35956486	...	9	27	38	2.503025e-07	7.509076e-07	1.056833e-06	-5.975994e+00	...	2	32224022	...	6.206550e-08
TCGA-23-1026-01B-01W-0484-10	28	28	0	24	0	exome+100bp flanks	2	35956486	...	4	20	28	1.112456e-07	5.562279e-07	7.787190e-07	-6.108619e+00	...	4	32224022	...	1.241310e-07
TCGA-23-1027-01A-02W-0486-08	37	37	0	33	0	exome+100bp flanks	2	35956486	...	4	33	37	1.112456e-07	9.177760e-07	1.029022e-06	-5.987576e+00	...	0	32224022	...	0
TCGA-23-1028-01A-01W-0484-10	50	50	0	40	0	coding only	1	28825735	...	10	28	48	3.469122e-07	9.713542e-07	1.665179e-06	-5.778539e+00	...	10	28769549	...	3.475897e-07
TCGA-23-1029-01B-01W-0639-09	88	85	3	63	3.409091e-02	exome+100bp flanks	2	35956486	...	22	49	78	6.118507e-07	1.362758e-06	2.169289e-06	-5.663683e+00	...	7	32224022	...	2.172292e-07
TCGA-23-1030-01A-02W-0486-08	34	34	0	31	0	exome+100bp flanks	2	35956486	...	3	30	34	8.343418e-08	8.343418e-07	9.455874e-07	-6.024298e+00	...	1	32224022	...	3.103275e-08
TCGA-23-1031-01A-01W-0486-08	84	84	0	64	0	coding only	1	28825735	...	20	61	83	6.938245e-07	2.116165e-06	2.879372e-06	-5.540702e+00	...	2	28769549	...	6.951795e-08
TCGA-23-1032-01A-02W-0486-08	69	69	0	53	0	coding only	1	28825735	...	16	53	69	5.550596e-07	1.838635e-06	2.393694e-06	-5.620931e+00	...	0	28769549	...	0
TCGA-23-1107-01A-01W-0484-10	7	7	0	7	0	exome+100bp flanks	2	35956486	...	0	7	7	0	1.946798e-07	1.946798e-07	-6.710679e+00	...	0	32224022	...	0
TCGA-23-1109-01A-01W-0484-10	7	7	0	7	0	exome+100bp flanks	2	35956486	...	0	7	7	0	1.946798e-07	1.946798e-07	-6.710679e+00	...	0	32224022	...	0
TCGA-23-1110-01A-01D-0428-08	101	101	0	82	0	coding only	1	28825735	...	19	76	99	6.591332e-07	2.636533e-06	3.434431e-06	-5.464145e+00	...	4	28769549	...	1.390359e-07
TCGA-23-1111-01A-01W-0639-09	62	59	3	43	4.838710e-02	exome+100bp flanks	2	35956486	...	14	38	55	3.893595e-07	1.056833e-06	1.529627e-06	-5.815415e+00	...	3	32224022	...	9.309825e-08
TCGA-23-1114-01B-01W-0633-09	115	114	1	87	8.695652e-03	coding only	1	28825735	...	26	71	106	9.019718e-07	2.463077e-06	3.677270e-06	-5.434475e+00	...	9	28769549	...	3.128308e-07
TCGA-23-1116-01A-01W-0486-08	12	12	0	10	0	exome+100bp flanks	2	35956486	...	2	9	12	5.562279e-08	2.503025e-07	3.337367e-07	-6.476596e+00	...	1	32224022	...	3.103275e-08
TCGA-23-1117-01A-02W-0488-09	114	109	5	79	4.385965e-02	exome+100bp flanks	2	35956486	...	30	73	105	8.343418e-07	2.030232e-06	2.920196e-06	-5.534588e+00	...	2	32224022	...	6.206550e-08
TCGA-23-1118-01A-01W-0488-09	74	70	4	62	5.405405e-02	exome+100bp flanks	2	35956486	...	7	60	69	1.946798e-07	1.668684e-06	1.918986e-06	-5.716928e+00	...	2	32224022	...	6.206550e-08
TCGA-23-1119-01A-02W-0484-10	15	15	0	15	0	exome+100bp flanks	2	35956486	...	0	14	14	0	3.893595e-07	3.893595e-07	-6.409649e+00	...	0	32224022	...	0
TCGA-23-1120-01A-02W-0484-10	111	111	0	101	0	coding only	1	28825735	...	10	58	107	3.469122e-07	2.012091e-06	3.711961e-06	-5.430397e+00	...	39	28769549	...	1.355600e-06
TCGA-23-1122-01A-01W-0486-08	89	89	0	68	0	coding only	1	28825735	...	21	67	89	7.285157e-07	2.324312e-06	3.087519e-06	-5.510390e+00	...	1	28769549	...	3.475897e-08
TCGA-23-1123-01A-01W-0488-09	95	89	6	76	6.315789e-02	exome+100bp flanks	2	35956486	...	13	71	85	3.615481e-07	1.974609e-06	2.363968e-06	-5.626358e+00	...	1	32224022	...	3.103275e-08
TCGA-23-1124-01A-01W-0488-09	163	155	8	127	4.907975e-02	exome+100bp flanks	2	35956486	...	24	123	148	6.674735e-07	3.420801e-06	4.116086e-06	-5.385516e+00	...	1	32224022	...	3.103275e-08
TCGA-23-1809-01A-01W-0633-09	66	60	6	49	9.090909e-02	exome+100bp flanks	2	35956486	...	11	47	58	3.059253e-07	1.307136e-06	1.613061e-06	-5.792349e+00	...	0	32224022	...	0
TCGA-23-2072-01A-01W-0722-08	50	50	0	41	0	coding only	1	28825735	...	9	40	49	3.122210e-07	1.387649e-06	1.699870e-06	-5.769584e+00	...	0	28769549	...	0
TCGA-23-2077-01A-01W-0722-08	55	55	0	43	0	coding only	1	28825735	...	12	43	55	4.162947e-07	1.491723e-06	1.908017e-06	-5.719418e+00	...	0	28769549	...	0
TCGA-23-2078-01A-01W-0722-08	58	58	0	48	0	coding only	1	28825735	...	10	46	58	3.469122e-07	1.595796e-06	2.012091e-06	-5.696352e+00	...	2	28769549	...	6.951795e-08
TCGA-23-2079-01A-01W-0722-08	48	48	0	40	0	exome+100bp flanks	2	35956486	...	8	39	47	2.224912e-07	1.084644e-06	1.307136e-06	-5.883679e+00	...	0	32224022	...	0
TCGA-23-2081-01A-01W-0722-08	44	44	0	32	0	exome+100bp flanks	2	35956486	...	12	30	44	3.337367e-07	8.343418e-07	1.223701e-06	-5.912325e+00	...	2	32224022	...	6.206550e-08
TCGA-23-2641-01A-01D-1526-09	99	94	5	66	5.050505e-02	exome+100bp flanks	2	35956486	...	26	61	87	7.230962e-07	1.696495e-06	2.419591e-06	-5.616258e+00	...	0	32224022	...	0
TCGA-23-2643-01A-01D-1526-09	47	43	4	30	8.510638e-02	exome+100bp flanks	2	35956486	...	9	29	38	2.503025e-07	8.065304e-07	1.056833e-06	-5.975994e+00	...	0	32224022	...	0
TCGA-23-2645-01A-01W-1091-09	139	132	7	96	5.035971e-02	exome+100bp flanks	2	35956486	...	35	90	125	9.733988e-07	2.503025e-06	3.476424e-06	-5.458867e+00	...	0	32224022	...	0
TCGA-23-2647-01A-01D-1526-09	59	57	2	44	3.389831e-02	exome+100bp flanks	2	35956486	...	13	42	55	3.615481e-07	1.168079e-06	1.529627e-06	-5.815415e+00	...	0	32224022	...	0
TCGA-23-2649-01A-01D-1526-09	131	127	4	100	3.053435e-02	exome+100bp flanks	2	35956486	...	25	97	122	6.952849e-07	2.697705e-06	3.392990e-06	-5.469417e+00	...	0	32224022	...	0
TCGA-24-0966-01A-01W-0977-09	40	38	2	30	5.000000e-02	exome+100bp flanks	2	35956486	...	6	28	35	1.668684e-07	7.787190e-07	9.733988e-07	-6.011709e+00	...	1	32224022	...	3.103275e-08
TCGA-24-0968-01A-01W-0484-10	20	20	0	17	0	exome+100bp flanks	2	35956486	...	3	17	20	8.343418e-08	4.727937e-07	5.562279e-07	-6.254747e+00	...	0	32224022	...	0
TCGA-24-0970-01B-01W-0486-08	25	25	0	19	0	exome+100bp flanks	2	35956486	...	6	19	25	1.668684e-07	5.284165e-07	6.952849e-07	-6.157837e+00	...	0	32224022	...	0
TCGA-24-0975-01B-02W-0486-08	18	18	0	14	0	exome+100bp flanks	2	35956486	...	4	14	18	1.112456e-07	3.893595e-07	5.006051e-07	-6.300505e+00	...	0	32224022	...	0
TCGA-24-0979-01A-01W-0486-08	86	86	0	69	0	coding only	1	28825735	...	16	68	84	5.550596e-07	2.359003e-06	2.914063e-06	-5.535501e+00	...	0	28769549	...	0
TCGA-24-0980-01A-01W-0421-09	42	39	3	33	7.142857e-02	exome+100bp flanks	2	35956486	...	6	28	36	1.668684e-07	7.787190e-07	1.001210e-06	-5.999475e+00	...	1	32224022	...	3.103275e-08
TCGA-24-0982-01A-01W-0488-09	55	54	1	37	1.818182e-02	coding only	1	28825735	...	15	32	48	5.203683e-07	1.110119e-06	1.665179e-06	-5.778539e+00	...	1	28769549	...	3.475897e-08
TCGA-24-1103-01A-01W-0488-09	84	80	4	56	4.761905e-02	exome+100bp flanks	2	35956486	...	21	50	74	5.840393e-07	1.390570e-06	2.058043e-06	-5.686546e+00	...	3	32224022	...	9.309825e-08
TCGA-24-1104-01A-01W-0488-09	68	63	5	46	7.352941e-02	exome+100bp flanks	2	35956486	...	16	44	61	4.449823e-07	1.223701e-06	1.696495e-06	-5.770447e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1105-01A-01W-0484-10	21	21	0	18	0	exome+100bp flanks	2	35956486	...	3	14	21	8.343418e-08	3.893595e-07	5.840393e-07	-6.233558e+00	...	4	32224022	...	1.241310e-07
TCGA-24-1413-01A-01W-0494-09	43	41	2	35	4.651163e-02	exome+100bp flanks	2	35956486	...	6	31	37	1.668684e-07	8.621532e-07	1.029022e-06	-5.987576e+00	...	0	32224022	...	0
TCGA-24-1416-01A-01W-0549-09	17	16	1	12	5.882353e-02	exome+100bp flanks	2	35956486	...	4	11	16	1.112456e-07	3.059253e-07	4.449823e-07	-6.351657e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1417-01A-01W-0549-09	59	59	0	41	0	coding only	1	28825735	...	18	41	59	6.244420e-07	1.422340e-06	2.046782e-06	-5.688928e+00	...	0	28769549	...	0
TCGA-24-1418-01A-01W-0549-09	47	46	1	38	2.127660e-02	exome+100bp flanks	2	35956486	...	8	35	44	2.224912e-07	9.733988e-07	1.223701e-06	-5.912325e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1419-01A-01W-0545-08	30	30	0	27	0	exome+100bp flanks	2	35956486	...	3	27	30	8.343418e-08	7.509076e-07	8.343418e-07	-6.078656e+00	...	0	32224022	...	0
TCGA-24-1422-01A-01W-0545-08	85	85	0	65	0	coding only	1	28825735	...	20	61	82	6.938245e-07	2.116165e-06	2.844680e-06	-5.545967e+00	...	1	28769549	...	3.475897e-08
TCGA-24-1423-01A-01W-0545-08	55	55	0	48	0	coding only	1	28825735	...	6	44	53	2.081473e-07	1.526414e-06	1.838635e-06	-5.735505e+00	...	3	28769549	...	1.042769e-07
TCGA-24-1424-01A-01W-0549-09	53	51	2	40	3.773585e-02	exome+100bp flanks	2	35956486	...	11	36	47	3.059253e-07	1.001210e-06	1.307136e-06	-5.883679e+00	...	0	32224022	...	0
TCGA-24-1425-01A-02W-0553-09	33	31	2	25	6.060606e-02	exome+100bp flanks	2	35956486	...	6	25	31	1.668684e-07	6.952849e-07	8.621532e-07	-6.064416e+00	...	0	32224022	...	0
TCGA-24-1426-01A-01W-0549-09	32	31	1	19	3.125000e-02	exome+100bp flanks	2	35956486	...	12	19	31	3.337367e-07	5.284165e-07	8.621532e-07	-6.064416e+00	...	0	32224022	...	0
TCGA-24-1427-01A-01W-0549-09	61	59	2	46	3.278689e-02	exome+100bp flanks	2	35956486	...	12	45	58	3.337367e-07	1.251513e-06	1.613061e-06	-5.792349e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1428-01A-01W-0549-09	16	16	0	13	0	exome+100bp flanks	2	35956486	...	3	12	15	8.343418e-08	3.337367e-07	4.171709e-07	-6.379686e+00	...	0	32224022	...	0
TCGA-24-1431-01A-01D-0472-08	31	31	0	24	0	exome+100bp flanks	2	35956486	...	7	23	30	1.946798e-07	6.396621e-07	8.343418e-07	-6.078656e+00	...	0	32224022	...	0
TCGA-24-1434-01A-01W-0545-08	39	39	0	29	0	exome+100bp flanks	2	35956486	...	10	27	39	2.781139e-07	7.509076e-07	1.084644e-06	-5.964713e+00	...	2	32224022	...	6.206550e-08
TCGA-24-1435-01A-01W-0549-09	86	82	4	67	4.651163e-02	exome+100bp flanks	2	35956486	...	15	62	81	4.171709e-07	1.724306e-06	2.252723e-06	-5.647292e+00	...	4	32224022	...	1.241310e-07
TCGA-24-1436-01A-01W-0549-09	50	48	2	34	4.000000e-02	exome+100bp flanks	2	35956486	...	14	33	48	3.893595e-07	9.177760e-07	1.334947e-06	-5.874536e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1463-01A-01W-0549-09	69	67	2	57	2.898551e-02	coding only	1	28825735	...	10	49	64	3.469122e-07	1.699870e-06	2.220238e-06	-5.653600e+00	...	5	28769549	...	1.737949e-07
TCGA-24-1464-01A-01W-0549-09	60	57	3	39	5.000000e-02	exome+100bp flanks	2	35956486	...	15	35	53	4.171709e-07	9.733988e-07	1.474004e-06	-5.831501e+00	...	3	32224022	...	9.309825e-08
TCGA-24-1466-01A-01W-0545-08	47	47	0	39	0	exome+100bp flanks	2	35956486	...	8	37	46	2.224912e-07	1.029022e-06	1.279324e-06	-5.893019e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1469-01A-01W-0553-09	166	161	5	121	3.012048e-02	exome+100bp flanks	2	35956486	...	38	111	151	1.056833e-06	3.087065e-06	4.199520e-06	-5.376800e+00	...	2	32224022	...	6.206550e-08
TCGA-24-1470-01A-01W-0553-09	89	82	7	60	7.865169e-02	exome+100bp flanks	2	35956486	...	22	56	81	6.118507e-07	1.557438e-06	2.252723e-06	-5.647292e+00	...	3	32224022	...	9.309825e-08
TCGA-24-1471-01A-01W-0551-08	23	23	0	19	0	exome+100bp flanks	2	35956486	...	4	19	23	1.112456e-07	5.284165e-07	6.396621e-07	-6.194049e+00	...	0	32224022	...	0
TCGA-24-1474-01A-01W-0551-08	38	38	0	33	0	exome+100bp flanks	2	35956486	...	5	33	38	1.390570e-07	9.177760e-07	1.056833e-06	-5.975994e+00	...	0	32224022	...	0
TCGA-24-1544-01A-01W-0615-10	27	27	0	18	0	exome+100bp flanks	2	35956486	...	9	16	27	2.503025e-07	4.449823e-07	7.509076e-07	-6.124413e+00	...	2	32224022	...	6.206550e-08
TCGA-24-1545-01A-01W-0615-10	19	19	0	18	0	exome+100bp flanks	2	35956486	...	1	17	19	2.781139e-08	4.727937e-07	5.284165e-07	-6.277024e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1546-01A-01W-0615-10	12	12	0	10	0	exome+100bp flanks	2	35956486	...	2	10	12	5.562279e-08	2.781139e-07	3.337367e-07	-6.476596e+00	...	0	32224022	...	0
TCGA-24-1548-01A-01W-0615-10	29	29	0	24	0	exome+100bp flanks	2	35956486	...	5	21	29	1.390570e-07	5.840393e-07	8.065304e-07	-6.093379e+00	...	3	32224022	...	9.309825e-08
TCGA-24-1549-01A-01W-0553-09	43	41	2	35	4.651163e-02	exome+100bp flanks	2	35956486	...	5	29	35	1.390570e-07	8.065304e-07	9.733988e-07	-6.011709e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1551-01A-01W-0551-08	34	34	0	24	0	exome+100bp flanks	2	35956486	...	10	24	34	2.781139e-07	6.674735e-07	9.455874e-07	-6.024298e+00	...	0	32224022	...	0
TCGA-24-1552-01A-01W-0551-08	36	36	0	28	0	exome+100bp flanks	2	35956486	...	8	27	36	2.224912e-07	7.509076e-07	1.001210e-06	-5.999475e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1553-01A-01W-0552-10	31	31	0	27	0	exome+100bp flanks	2	35956486	...	4	25	31	1.112456e-07	6.952849e-07	8.621532e-07	-6.064416e+00	...	2	32224022	...	6.206550e-08
TCGA-24-1555-01A-01W-0552-10	47	47	0	39	0	exome+100bp flanks	2	35956486	...	7	34	44	1.946798e-07	9.455874e-07	1.223701e-06	-5.912325e+00	...	3	32224022	...	9.309825e-08
TCGA-24-1556-01A-01W-0615-10	51	51	0	41	0	coding only	1	28825735	...	8	37	47	2.775298e-07	1.283575e-06	1.630487e-06	-5.787683e+00	...	2	28769549	...	6.951795e-08
TCGA-24-1557-01A-01W-0615-10	47	47	0	41	0	exome+100bp flanks	2	35956486	...	6	40	47	1.668684e-07	1.112456e-06	1.307136e-06	-5.883679e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1558-01A-01W-0615-10	23	23	0	19	0	exome+100bp flanks	2	35956486	...	4	18	23	1.112456e-07	5.006051e-07	6.396621e-07	-6.194049e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1560-01A-01W-0615-10	28	28	0	21	0	exome+100bp flanks	2	35956486	...	6	19	27	1.668684e-07	5.284165e-07	7.509076e-07	-6.124413e+00	...	2	32224022	...	6.206550e-08
TCGA-24-1562-01A-01W-0553-09	32	31	1	25	3.125000e-02	exome+100bp flanks	2	35956486	...	5	23	29	1.390570e-07	6.396621e-07	8.065304e-07	-6.093379e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1563-01A-01W-0553-09	74	71	3	53	4.054054e-02	exome+100bp flanks	2	35956486	...	18	52	70	5.006051e-07	1.446192e-06	1.946798e-06	-5.710679e+00	...	0	32224022	...	0
TCGA-24-1564-01A-01W-0551-08	34	34	0	26	0	exome+100bp flanks	2	35956486	...	8	25	33	2.224912e-07	6.952849e-07	9.177760e-07	-6.037263e+00	...	0	32224022	...	0
TCGA-24-1565-01A-01W-0551-08	31	31	0	23	0	exome+100bp flanks	2	35956486	...	8	21	31	2.224912e-07	5.840393e-07	8.621532e-07	-6.064416e+00	...	2	32224022	...	6.206550e-08
TCGA-24-1567-01A-01W-0615-10	51	51	0	41	0	coding only	1	28825735	...	10	37	49	3.469122e-07	1.283575e-06	1.699870e-06	-5.769584e+00	...	2	28769549	...	6.951795e-08
TCGA-24-1603-01A-01W-0551-08	25	25	0	22	0	exome+100bp flanks	2	35956486	...	3	20	25	8.343418e-08	5.562279e-07	6.952849e-07	-6.157837e+00	...	2	32224022	...	6.206550e-08
TCGA-24-1604-01A-01W-0552-10	64	64	0	49	0	coding only	1	28825735	...	15	44	62	5.203683e-07	1.526414e-06	2.150856e-06	-5.667389e+00	...	3	28769549	...	1.042769e-07
TCGA-24-1614-01A-01W-0552-10	37	37	0	29	0	exome+100bp flanks	2	35956486	...	8	26	37	2.224912e-07	7.230962e-07	1.029022e-06	-5.987576e+00	...	3	32224022	...	9.309825e-08
TCGA-24-1616-01A-01W-0553-09	64	62	2	52	3.125000e-02	exome+100bp flanks	2	35956486	...	9	49	58	2.503025e-07	1.362758e-06	1.613061e-06	-5.792349e+00	...	0	32224022	...	0
TCGA-24-1842-01A-01W-0639-09	41	39	2	30	4.878049e-02	exome+100bp flanks	2	35956486	...	9	25	37	2.503025e-07	6.952849e-07	1.029022e-06	-5.987576e+00	...	3	32224022	...	9.309825e-08
TCGA-24-1843-01A-01W-0639-09	91	87	4	67	4.395604e-02	exome+100bp flanks	2	35956486	...	18	62	81	5.006051e-07	1.724306e-06	2.252723e-06	-5.647292e+00	...	1	32224022	...	3.103275e-08
TCGA-24-1844-01A-01W-0639-09	159	149	10	124	6.289308e-02	exome+100bp flanks	2	35956486	...	23	112	141	6.396621e-07	3.114876e-06	3.921407e-06	-5.406558e+00	...	6	32224022	...	1.861965e-07
TCGA-24-1845-01A-01W-0639-09	150	146	4	115	2.666667e-02	coding only	1	28825735	...	27	95	132	9.366630e-07	3.295666e-06	4.579241e-06	-5.339206e+00	...	10	28769549	...	3.475897e-07
TCGA-24-1846-01A-01W-0639-09	118	112	6	89	5.084746e-02	exome+100bp flanks	2	35956486	...	21	67	99	5.840393e-07	1.863363e-06	2.753328e-06	-5.560142e+00	...	11	32224022	...	3.413602e-07
TCGA-24-1847-01A-01W-0633-09	89	84	5	67	5.617978e-02	exome+100bp flanks	2	35956486	...	16	61	79	4.449823e-07	1.696495e-06	2.197100e-06	-5.658150e+00	...	2	32224022	...	6.206550e-08
TCGA-24-1849-01A-01W-0639-09	103	96	7	79	6.796117e-02	exome+100bp flanks	2	35956486	...	17	61	87	4.727937e-07	1.696495e-06	2.419591e-06	-5.616258e+00	...	9	32224022	...	2.792947e-07
TCGA-24-1850-01A-01W-0639-09	85	80	5	60	5.882353e-02	exome+100bp flanks	2	35956486	...	18	56	74	5.006051e-07	1.557438e-06	2.058043e-06	-5.686546e+00	...	0	32224022	...	0
TCGA-24-2019-01A-02W-0722-08	32	32	0	23	0	exome+100bp flanks	2	35956486	...	9	23	32	2.503025e-07	6.396621e-07	8.899646e-07	-6.050627e+00	...	0	32224022	...	0
TCGA-24-2024-01A-02W-0722-08	79	79	0	64	0	coding only	1	28825735	...	15	61	78	5.203683e-07	2.116165e-06	2.705915e-06	-5.567686e+00	...	2	28769549	...	6.951795e-08
TCGA-24-2030-01A-01W-0722-08	49	49	0	38	0	exome+100bp flanks	2	35956486	...	11	37	49	3.059253e-07	1.029022e-06	1.362758e-06	-5.865581e+00	...	1	32224022	...	3.103275e-08
TCGA-24-2035-01A-01W-0722-08	65	65	0	53	0	coding only	1	28825735	...	12	51	65	4.162947e-07	1.769252e-06	2.254929e-06	-5.646867e+00	...	2	28769549	...	6.951795e-08
TCGA-24-2038-01A-01W-0722-08	10	10	0	9	0	exome+100bp flanks	2	35956486	...	1	9	10	2.781139e-08	2.503025e-07	2.781139e-07	-6.555777e+00	...	0	32224022	...	0
TCGA-24-2254-01A-01W-0722-08	45	45	0	32	0	exome+100bp flanks	2	35956486	...	13	28	45	3.615481e-07	7.787190e-07	1.251513e-06	-5.902565e+00	...	4	32224022	...	1.241310e-07
TCGA-24-2260-01A-01W-0722-08	43	43	0	33	0	exome+100bp flanks	2	35956486	...	9	30	41	2.503025e-07	8.343418e-07	1.140267e-06	-5.942993e+00	...	2	32224022	...	6.206550e-08
TCGA-24-2261-01A-01W-0722-08	38	38	0	25	0	exome+100bp flanks	2	35956486	...	13	24	38	3.615481e-07	6.674735e-07	1.056833e-06	-5.975994e+00	...	1	32224022	...	3.103275e-08
TCGA-24-2262-01A-01W-0799-08	48	48	0	31	0	exome+100bp flanks	2	35956486	...	17	31	48	4.727937e-07	8.621532e-07	1.334947e-06	-5.874536e+00	...	0	32224022	...	0
TCGA-24-2267-01A-01W-0799-08	95	95	0	73	0	coding only	1	28825735	...	22	72	95	7.632069e-07	2.497768e-06	3.295666e-06	-5.482057e+00	...	1	28769549	...	3.475897e-08
TCGA-24-2271-01A-01W-0799-08	19	19	0	14	0	exome+100bp flanks	2	35956486	...	5	13	19	1.390570e-07	3.615481e-07	5.284165e-07	-6.277024e+00	...	1	32224022	...	3.103275e-08
TCGA-24-2280-01A-01W-0799-08	5	5	0	3	0	exome+100bp flanks	2	35956486	...	2	3	5	5.562279e-08	8.343418e-08	1.390570e-07	-6.856807e+00	...	0	32224022	...	0
TCGA-24-2281-01A-01W-0799-08	35	35	0	28	0	exome+100bp flanks	2	35956486	...	7	28	35	1.946798e-07	7.787190e-07	9.733988e-07	-6.011709e+00	...	0	32224022	...	0
TCGA-24-2288-01A-01W-0799-08	4	4	0	3	0	exome+100bp flanks	2	35956486	...	1	3	4	2.781139e-08	8.343418e-08	1.112456e-07	-6.953717e+00	...	0	32224022	...	0
TCGA-24-2289-01A-01W-0799-08	4	4	0	4	0	exome+100bp flanks	2	35956486	...	0	4	4	0	1.112456e-07	1.112456e-07	-6.953717e+00	...	0	32224022	...	0
TCGA-24-2290-01A-01W-0799-08	57	57	0	38	0	coding only	1	28825735	...	19	34	57	6.591332e-07	1.179502e-06	1.977400e-06	-5.703906e+00	...	4	28769549	...	1.390359e-07
TCGA-24-2293-01A-01W-0799-08	37	37	0	30	0	exome+100bp flanks	2	35956486	...	7	29	36	1.946798e-07	8.065304e-07	1.001210e-06	-5.999475e+00	...	0	32224022	...	0
TCGA-24-2298-01A-01W-0799-08	51	51	0	44	0	coding only	1	28825735	...	7	44	51	2.428386e-07	1.526414e-06	1.769252e-06	-5.752210e+00	...	0	28769549	...	0
TCGA-25-1313-01A-01W-0492-08	102	102	0	78	0	coding only	1	28825735	...	23	76	100	7.978981e-07	2.636533e-06	3.469122e-06	-5.459780e+00	...	1	28769549	...	3.475897e-08
TCGA-25-1315-01A-01W-0494-09	59	56	3	47	5.084746e-02	exome+100bp flanks	2	35956486	...	8	39	50	2.224912e-07	1.084644e-06	1.390570e-06	-5.856807e+00	...	3	32224022	...	9.309825e-08
TCGA-25-1316-01A-01W-0494-09	21	21	0	14	0	exome+100bp flanks	2	35956486	...	7	10	20	1.946798e-07	2.781139e-07	5.562279e-07	-6.254747e+00	...	3	32224022	...	9.309825e-08
TCGA-25-1317-01A-01W-0490-10	42	42	0	37	0	exome+100bp flanks	2	35956486	...	5	30	42	1.390570e-07	8.343418e-07	1.168079e-06	-5.932528e+00	...	7	32224022	...	2.172292e-07
TCGA-25-1318-01A-01W-0490-10	56	56	0	43	0	coding only	1	28825735	...	13	41	56	4.509859e-07	1.422340e-06	1.942708e-06	-5.711592e+00	...	2	28769549	...	6.951795e-08
TCGA-25-1319-01A-01W-0492-08	53	53	0	44	0	coding only	1	28825735	...	9	44	53	3.122210e-07	1.526414e-06	1.838635e-06	-5.735505e+00	...	0	28769549	...	0
TCGA-25-1320-01A-01W-0492-08	32	32	0	22	0	exome+100bp flanks	2	35956486	...	10	21	32	2.781139e-07	5.840393e-07	8.899646e-07	-6.050627e+00	...	1	32224022	...	3.103275e-08
TCGA-25-1321-01A-01W-0492-08	33	33	0	26	0	exome+100bp flanks	2	35956486	...	7	25	32	1.946798e-07	6.952849e-07	8.899646e-07	-6.050627e+00	...	0	32224022	...	0
TCGA-25-1322-01A-01W-0494-09	48	44	4	31	8.333333e-02	exome+100bp flanks	2	35956486	...	13	29	43	3.615481e-07	8.065304e-07	1.195890e-06	-5.922309e+00	...	1	32224022	...	3.103275e-08
TCGA-25-1324-01A-01W-0490-10	40	40	0	36	0	exome+100bp flanks	2	35956486	...	4	29	39	1.112456e-07	8.065304e-07	1.084644e-06	-5.964713e+00	...	6	32224022	...	1.861965e-07
TCGA-25-1325-01A-01W-0490-10	30	30	0	30	0	exome+100bp flanks	2	35956486	...	0	30	30	0	8.343418e-07	8.343418e-07	-6.078656e+00	...	0	32224022	...	0
TCGA-25-1326-01A-01W-0492-08	110	110	0	90	0	coding only	1	28825735	...	20	89	109	6.938245e-07	3.087519e-06	3.781343e-06	-5.422354e+00	...	0	28769549	...	0
TCGA-25-1328-01A-01W-0492-08	8	8	0	7	0	exome+100bp flanks	2	35956486	...	1	7	8	2.781139e-08	1.946798e-07	2.224912e-07	-6.652687e+00	...	0	32224022	...	0
TCGA-25-1329-01A-01W-0492-08	35	35	0	28	0	exome+100bp flanks	2	35956486	...	7	26	35	1.946798e-07	7.230962e-07	9.733988e-07	-6.011709e+00	...	2	32224022	...	6.206550e-08
TCGA-25-1623-01A-01W-0615-10	9	9	0	9	0	exome+100bp flanks	2	35956486	...	0	9	9	0	2.503025e-07	2.503025e-07	-6.601535e+00	...	0	32224022	...	0
TCGA-25-1625-01A-01W-0615-10	32	32	0	29	0	exome+100bp flanks	2	35956486	...	3	29	32	8.343418e-08	8.065304e-07	8.899646e-07	-6.050627e+00	...	0	32224022	...	0
TCGA-25-1626-01A-01W-0615-10	8	8	0	5	0	exome+100bp flanks	2	35956486	...	3	5	8	8.343418e-08	1.390570e-07	2.224912e-07	-6.652687e+00	...	0	32224022	...	0
TCGA-25-1627-01A-01W-0615-10	30	30	0	25	0	exome+100bp flanks	2	35956486	...	5	23	28	1.390570e-07	6.396621e-07	7.787190e-07	-6.108619e+00	...	0	32224022	...	0
TCGA-25-1628-01A-01W-0615-10	23	23	0	15	0	exome+100bp flanks	2	35956486	...	8	15	23	2.224912e-07	4.171709e-07	6.396621e-07	-6.194049e+00	...	0	32224022	...	0
TCGA-25-1630-01A-01W-0615-10	44	44	0	34	0	exome+100bp flanks	2	35956486	...	10	32	43	2.781139e-07	8.899646e-07	1.195890e-06	-5.922309e+00	...	1	32224022	...	3.103275e-08
TCGA-25-1631-01A-01W-0615-10	27	27	0	21	0	exome+100bp flanks	2	35956486	...	6	19	27	1.668684e-07	5.284165e-07	7.509076e-07	-6.124413e+00	...	2	32224022	...	6.206550e-08
TCGA-25-1632-01A-01W-0615-10	45	45	0	35	0	exome+100bp flanks	2	35956486	...	10	31	42	2.781139e-07	8.621532e-07	1.168079e-06	-5.932528e+00	...	1	32224022	...	3.103275e-08
TCGA-25-1633-01A-01W-0615-10	14	14	0	10	0	exome+100bp flanks	2	35956486	...	4	10	14	1.112456e-07	2.781139e-07	3.893595e-07	-6.409649e+00	...	0	32224022	...	0
TCGA-25-1634-01A-01W-0615-10	25	25	0	20	0	exome+100bp flanks	2	35956486	...	5	19	25	1.390570e-07	5.284165e-07	6.952849e-07	-6.157837e+00	...	1	32224022	...	3.103275e-08
TCGA-25-1635-01A-01W-0615-10	18	18	0	17	0	exome+100bp flanks	2	35956486	...	1	17	18	2.781139e-08	4.727937e-07	5.006051e-07	-6.300505e+00	...	0	32224022	...	0
TCGA-25-2042-01A-01W-0799-08	43	43	0	32	0	exome+100bp flanks	2	35956486	...	11	30	43	3.059253e-07	8.343418e-07	1.195890e-06	-5.922309e+00	...	2	32224022	...	6.206550e-08
TCGA-25-2391-01A-01W-0799-08	1	1	0	1	0	exome+100bp flanks	2	35956486	...	0	1	1	0	2.781139e-08	2.781139e-08	-7.555777e+00	...	0	32224022	...	0
TCGA-25-2392-01A-01W-0799-08	85	85	0	65	0	coding only	1	28825735	...	20	63	83	6.938245e-07	2.185547e-06	2.879372e-06	-5.540702e+00	...	0	28769549	...	0
TCGA-25-2393-01A-01W-0799-08	49	49	0	41	0	exome+100bp flanks	2	35956486	...	8	41	49	2.224912e-07	1.140267e-06	1.362758e-06	-5.865581e+00	...	0	32224022	...	0
TCGA-25-2396-01A-01W-0799-08	23	23	0	16	0	exome+100bp flanks	2	35956486	...	7	15	23	1.946798e-07	4.171709e-07	6.396621e-07	-6.194049e+00	...	1	32224022	...	3.103275e-08
TCGA-25-2398-01A-01W-0799-08	35	35	0	22	0	exome+100bp flanks	2	35956486	...	13	21	34	3.615481e-07	5.840393e-07	9.455874e-07	-6.024298e+00	...	0	32224022	...	0
TCGA-25-2399-01A-01W-0799-08	37	37	0	28	0	exome+100bp flanks	2	35956486	...	9	28	37	2.503025e-07	7.787190e-07	1.029022e-06	-5.987576e+00	...	0	32224022	...	0
TCGA-25-2400-01A-01W-0799-08	48	48	0	38	0	exome+100bp flanks	2	35956486	...	10	38	48	2.781139e-07	1.056833e-06	1.334947e-06	-5.874536e+00	...	0	32224022	...	0
TCGA-25-2401-01A-01W-0799-08	55	55	0	46	0	coding only	1	28825735	...	9	45	55	3.122210e-07	1.561105e-06	1.908017e-06	-5.719418e+00	...	1	28769549	...	3.475897e-08
TCGA-25-2404-01A-01W-0799-08	37	37	0	30	0	exome+100bp flanks	2	35956486	...	7	29	36	1.946798e-07	8.065304e-07	1.001210e-06	-5.999475e+00	...	0	32224022	...	0
TCGA-25-2408-01A-01W-0799-08	10	10	0	7	0	exome+100bp flanks	2	35956486	...	3	7	10	8.343418e-08	1.946798e-07	2.781139e-07	-6.555777e+00	...	0	32224022	...	0
TCGA-25-2409-01A-01W-0799-08	21	21	0	16	0	exome+100bp flanks	2	35956486	...	5	15	21	1.390570e-07	4.171709e-07	5.840393e-07	-6.233558e+00	...	1	32224022	...	3.103275e-08
TCGA-29-1688-01A-01W-0633-09	52	46	6	37	1.153846e-01	exome+100bp flanks	2	35956486	...	9	33	45	2.503025e-07	9.177760e-07	1.251513e-06	-5.902565e+00	...	3	32224022	...	9.309825e-08
TCGA-29-1690-01A-01W-0633-09	62	52	10	35	1.612903e-01	exome+100bp flanks	2	35956486	...	15	26	45	4.171709e-07	7.230962e-07	1.251513e-06	-5.902565e+00	...	4	32224022	...	1.241310e-07
TCGA-29-1691-01A-01W-0633-09	192	187	5	147	2.604167e-02	coding only	1	28825735	...	35	129	173	1.214193e-06	4.475168e-06	6.001582e-06	-5.221734e+00	...	9	28769549	...	3.128308e-07
TCGA-29-1693-01A-01W-0633-09	107	104	3	79	2.803738e-02	coding only	1	28825735	...	24	64	95	8.325894e-07	2.220238e-06	3.295666e-06	-5.482057e+00	...	7	28769549	...	2.433128e-07
TCGA-29-1694-01A-01W-0633-09	39	36	3	28	7.692308e-02	exome+100bp flanks	2	35956486	...	8	22	34	2.224912e-07	6.118507e-07	9.455874e-07	-6.024298e+00	...	3	32224022	...	9.309825e-08
TCGA-29-1695-01A-01W-0633-09	75	72	3	51	4.000000e-02	exome+100bp flanks	2	35956486	...	18	42	64	5.006051e-07	1.168079e-06	1.779929e-06	-5.749597e+00	...	4	32224022	...	1.241310e-07
TCGA-29-1696-01A-01W-0633-09	61	57	4	44	6.557377e-02	exome+100bp flanks	2	35956486	...	11	37	50	3.059253e-07	1.029022e-06	1.390570e-06	-5.856807e+00	...	2	32224022	...	6.206550e-08
TCGA-29-1697-01A-01W-0633-09	50	44	6	30	1.200000e-01	exome+100bp flanks	2	35956486	...	11	25	40	3.059253e-07	6.952849e-07	1.112456e-06	-5.953717e+00	...	4	32224022	...	1.241310e-07
TCGA-29-1698-01A-01W-0633-09	68	63	5	47	7.352941e-02	exome+100bp flanks	2	35956486	...	15	39	60	4.171709e-07	1.084644e-06	1.668684e-06	-5.777626e+00	...	6	32224022	...	1.861965e-07
TCGA-29-1699-01A-01W-0633-09	88	77	11	61	1.250000e-01	exome+100bp flanks	2	35956486	...	15	55	74	4.171709e-07	1.529627e-06	2.058043e-06	-5.686546e+00	...	4	32224022	...	1.241310e-07
TCGA-29-1701-01A-01W-0633-09	58	55	3	41	5.172414e-02	exome+100bp flanks	2	35956486	...	11	31	43	3.059253e-07	8.621532e-07	1.195890e-06	-5.922309e+00	...	1	32224022	...	3.103275e-08
TCGA-29-1702-01A-01W-0633-09	73	67	6	48	8.219178e-02	exome+100bp flanks	2	35956486	...	18	36	59	5.006051e-07	1.001210e-06	1.640872e-06	-5.784925e+00	...	5	32224022	...	1.551637e-07
TCGA-29-1703-01A-01W-0633-09	92	85	7	66	7.608696e-02	exome+100bp flanks	2	35956486	...	19	53	75	5.284165e-07	1.474004e-06	2.085855e-06	-5.680716e+00	...	3	32224022	...	9.309825e-08
TCGA-29-1705-01A-01W-0633-09	54	54	0	36	0	coding only	1	28825735	...	18	29	50	6.244420e-07	1.006045e-06	1.734561e-06	-5.760810e+00	...	3	28769549	...	1.042769e-07
TCGA-29-1707-01A-01W-0633-09	51	47	4	35	7.843137e-02	exome+100bp flanks	2	35956486	...	12	33	45	3.337367e-07	9.177760e-07	1.251513e-06	-5.902565e+00	...	0	32224022	...	0
TCGA-29-1710-01A-02W-0633-09	44	40	4	28	9.090909e-02	exome+100bp flanks	2	35956486	...	12	24	39	3.337367e-07	6.674735e-07	1.084644e-06	-5.964713e+00	...	3	32224022	...	9.309825e-08
TCGA-29-1711-01A-01W-0633-09	70	64	6	52	8.571429e-02	exome+100bp flanks	2	35956486	...	10	38	56	2.781139e-07	1.056833e-06	1.557438e-06	-5.807589e+00	...	8	32224022	...	2.482620e-07
TCGA-29-1761-01A-01W-0633-09	188	176	12	134	6.382979e-02	exome+100bp flanks	2	35956486	...	38	116	164	1.056833e-06	3.226122e-06	4.561069e-06	-5.340933e+00	...	10	32224022	...	3.103275e-07
TCGA-29-1762-01A-01W-0633-09	77	69	8	56	1.038961e-01	exome+100bp flanks	2	35956486	...	11	51	65	3.059253e-07	1.418381e-06	1.807741e-06	-5.742864e+00	...	3	32224022	...	9.309825e-08
TCGA-29-1763-01A-02W-0633-09	125	118	7	82	5.600000e-02	exome+100bp flanks	2	35956486	...	34	71	111	9.455874e-07	1.974609e-06	3.087065e-06	-5.510454e+00	...	6	32224022	...	1.861965e-07
TCGA-29-1764-01A-01W-0633-09	86	80	6	61	6.976744e-02	exome+100bp flanks	2	35956486	...	19	59	78	5.284165e-07	1.640872e-06	2.169289e-06	-5.663683e+00	...	0	32224022	...	0
TCGA-29-1766-01A-01W-0633-09	64	61	3	46	4.687500e-02	exome+100bp flanks	2	35956486	...	15	42	60	4.171709e-07	1.168079e-06	1.668684e-06	-5.777626e+00	...	3	32224022	...	9.309825e-08
TCGA-29-1768-01A-01W-0633-09	65	57	8	42	1.230769e-01	exome+100bp flanks	2	35956486	...	13	33	52	3.615481e-07	9.177760e-07	1.446192e-06	-5.839774e+00	...	6	32224022	...	1.861965e-07
TCGA-29-1769-01A-01W-0639-09	78	76	2	61	2.564103e-02	coding only	1	28825735	...	13	60	73	4.509859e-07	2.081473e-06	2.532459e-06	-5.596458e+00	...	0	28769549	...	0
TCGA-29-1770-01A-01W-0633-09	100	90	10	71	1.000000e-01	exome+100bp flanks	2	35956486	...	19	62	87	5.284165e-07	1.724306e-06	2.419591e-06	-5.616258e+00	...	6	32224022	...	1.861965e-07
TCGA-29-1771-01A-01W-0633-09	17	16	1	14	5.882353e-02	exome+100bp flanks	2	35956486	...	2	12	16	5.562279e-08	3.337367e-07	4.449823e-07	-6.351657e+00	...	2	32224022	...	6.206550e-08
TCGA-29-1774-01A-01W-0639-09	45	45	0	36	0	exome+100bp flanks	2	35956486	...	9	31	40	2.503025e-07	8.621532e-07	1.112456e-06	-5.953717e+00	...	0	32224022	...	0
TCGA-29-1775-01A-01W-0639-09	130	122	8	91	6.153846e-02	exome+100bp flanks	2	35956486	...	29	70	107	8.065304e-07	1.946798e-06	2.975819e-06	-5.526393e+00	...	7	32224022	...	2.172292e-07
TCGA-29-1776-01A-01W-0639-09	57	55	2	47	3.508772e-02	exome+100bp flanks	2	35956486	...	7	36	52	1.946798e-07	1.001210e-06	1.446192e-06	-5.839774e+00	...	9	32224022	...	2.792947e-07
TCGA-29-1777-01A-01W-0639-09	136	128	8	100	5.882353e-02	exome+100bp flanks	2	35956486	...	27	87	122	7.509076e-07	2.419591e-06	3.392990e-06	-5.469417e+00	...	7	32224022	...	2.172292e-07
TCGA-29-1778-01A-01W-0639-09	46	42	4	25	8.695652e-02	exome+100bp flanks	2	35956486	...	17	24	41	4.727937e-07	6.674735e-07	1.140267e-06	-5.942993e+00	...	0	32224022	...	0
TCGA-29-1781-01A-01W-0633-09	112	102	10	84	8.928571e-02	exome+100bp flanks	2	35956486	...	17	72	95	4.727937e-07	2.002420e-06	2.642082e-06	-5.578054e+00	...	6	32224022	...	1.861965e-07
TCGA-29-1783-01A-01W-0633-09	64	61	3	50	4.687500e-02	exome+100bp flanks	2	35956486	...	11	46	60	3.059253e-07	1.279324e-06	1.668684e-06	-5.777626e+00	...	3	32224022	...	9.309825e-08
TCGA-29-1784-01A-02W-0633-09	110	105	5	87	4.545455e-02	exome+100bp flanks	2	35956486	...	17	82	99	4.727937e-07	2.280534e-06	2.753328e-06	-5.560142e+00	...	0	32224022	...	0
TCGA-29-1785-01A-01W-0633-09	80	75	5	56	6.250000e-02	exome+100bp flanks	2	35956486	...	19	47	72	5.284165e-07	1.307136e-06	2.002420e-06	-5.698445e+00	...	6	32224022	...	1.861965e-07
TCGA-29-2427-01A-01W-0799-08	56	56	0	40	0	coding only	1	28825735	...	16	38	56	5.550596e-07	1.318266e-06	1.942708e-06	-5.711592e+00	...	2	28769549	...	6.951795e-08
TCGA-29-2429-01A-01D-1526-09	86	83	3	60	3.488372e-02	exome+100bp flanks	2	35956486	...	22	58	80	6.118507e-07	1.613061e-06	2.224912e-06	-5.652687e+00	...	0	32224022	...	0
TCGA-29-2431-01A-01D-1526-09	34	34	0	26	0	exome+100bp flanks	2	35956486	...	7	26	33	1.946798e-07	7.230962e-07	9.177760e-07	-6.037263e+00	...	0	32224022	...	0
TCGA-29-2432-01A-01D-1526-09	93	90	3	64	3.225806e-02	exome+100bp flanks	2	35956486	...	24	63	87	6.674735e-07	1.752118e-06	2.419591e-06	-5.616258e+00	...	0	32224022	...	0
TCGA-29-2434-01A-01D-1526-09	117	109	8	85	6.837607e-02	exome+100bp flanks	2	35956486	...	24	84	108	6.674735e-07	2.336157e-06	3.003631e-06	-5.522353e+00	...	0	32224022	...	0
TCGA-29-2436-01A-01D-1526-09	11	10	1	6	9.090909e-02	exome+100bp flanks	2	35956486	...	4	5	9	1.112456e-07	1.390570e-07	2.503025e-07	-6.601535e+00	...	0	32224022	...	0
TCGA-30-1714-01A-02W-0633-09	80	73	7	63	8.750000e-02	exome+100bp flanks	2	35956486	...	10	54	70	2.781139e-07	1.501815e-06	1.946798e-06	-5.710679e+00	...	6	32224022	...	1.861965e-07
TCGA-30-1718-01A-01W-0633-09	122	118	4	89	3.278689e-02	exome+100bp flanks	2	35956486	...	28	78	112	7.787190e-07	2.169289e-06	3.114876e-06	-5.506559e+00	...	6	32224022	...	1.861965e-07
TCGA-30-1853-01A-02W-0699-08	34	34	0	24	0	exome+100bp flanks	2	35956486	...	10	23	34	2.781139e-07	6.396621e-07	9.455874e-07	-6.024298e+00	...	1	32224022	...	3.103275e-08
TCGA-30-1855-01A-01W-0639-09	123	111	12	80	9.756098e-02	exome+100bp flanks	2	35956486	...	30	71	106	8.343418e-07	1.974609e-06	2.948008e-06	-5.530471e+00	...	5	32224022	...	1.551637e-07
TCGA-30-1856-01A-01W-0639-09	68	64	4	52	5.882353e-02	exome+100bp flanks	2	35956486	...	12	41	58	3.337367e-07	1.140267e-06	1.613061e-06	-5.792349e+00	...	5	32224022	...	1.551637e-07
TCGA-30-1857-01A-02W-0639-09	94	86	8	68	8.510638e-02	exome+100bp flanks	2	35956486	...	16	62	78	4.449823e-07	1.724306e-06	2.169289e-06	-5.663683e+00	...	0	32224022	...	0
TCGA-30-1862-01	38	38	0	32	0	exome+100bp flanks	2	35956486	...	6	32	38	1.668684e-07	8.899646e-07	1.056833e-06	-5.975994e+00	...	0	32224022	...	0
TCGA-30-1891-01	69	69	0	52	0	coding only	1	28825735	...	17	48	69	5.897508e-07	1.665179e-06	2.393694e-06	-5.620931e+00	...	4	28769549	...	1.390359e-07
TCGA-31-1950-01A-01W-0699-08	21	21	0	18	0	exome+100bp flanks	2	35956486	...	3	18	21	8.343418e-08	5.006051e-07	5.840393e-07	-6.233558e+00	...	0	32224022	...	0
TCGA-31-1953-01	37	37	0	33	0	exome+100bp flanks	2	35956486	...	4	32	37	1.112456e-07	8.899646e-07	1.029022e-06	-5.987576e+00	...	1	32224022	...	3.103275e-08
TCGA-31-1959-01	53	53	0	38	0	coding only	1	28825735	...	15	38	53	5.203683e-07	1.318266e-06	1.838635e-06	-5.735505e+00	...	0	28769549	...	0
TCGA-36-1568-01A-01W-0615-10	44	44	0	35	0	exome+100bp flanks	2	35956486	...	9	33	44	2.503025e-07	9.177760e-07	1.223701e-06	-5.912325e+00	...	2	32224022	...	6.206550e-08
TCGA-36-1569-01A-01W-0615-10	9	9	0	7	0	exome+100bp flanks	2	35956486	...	2	7	9	5.562279e-08	1.946798e-07	2.503025e-07	-6.601535e+00	...	0	32224022	...	0
TCGA-36-1570-01A-01W-0615-10	28	28	0	20	0	exome+100bp flanks	2	35956486	...	8	18	28	2.224912e-07	5.006051e-07	7.787190e-07	-6.108619e+00	...	2	32224022	...	6.206550e-08
TCGA-36-1571-01A-01W-0615-10	13	13	0	8	0	exome+100bp flanks	2	35956486	...	5	8	13	1.390570e-07	2.224912e-07	3.615481e-07	-6.441834e+00	...	0	32224022	...	0
TCGA-36-1574-01A-01W-0615-10	18	18	0	16	0	exome+100bp flanks	2	35956486	...	2	15	18	5.562279e-08	4.171709e-07	5.006051e-07	-6.300505e+00	...	1	32224022	...	3.103275e-08
TCGA-36-1575-01A-01W-0615-10	33	33	0	29	0	exome+100bp flanks	2	35956486	...	4	27	33	1.112456e-07	7.509076e-07	9.177760e-07	-6.037263e+00	...	2	32224022	...	6.206550e-08
TCGA-36-1576-01A-01W-0615-10	14	14	0	11	0	exome+100bp flanks	2	35956486	...	3	10	14	8.343418e-08	2.781139e-07	3.893595e-07	-6.409649e+00	...	1	32224022	...	3.103275e-08
TCGA-36-1577-01A-01W-0615-10	60	60	0	56	0	coding only	1	28825735	...	4	43	60	1.387649e-07	1.491723e-06	2.081473e-06	-5.681629e+00	...	13	28769549	...	4.518667e-07
TCGA-36-1578-01A-01W-0615-10	55	55	0	45	0	coding only	1	28825735	...	10	42	55	3.469122e-07	1.457031e-06	1.908017e-06	-5.719418e+00	...	3	28769549	...	1.042769e-07
TCGA-36-1580-01A-01W-0615-10	12	12	0	12	0	exome+100bp flanks	2	35956486	...	0	12	12	0	3.337367e-07	3.337367e-07	-6.476596e+00	...	0	32224022	...	0
TCGA-36-2530-01A-01D-1526-09	83	78	5	62	6.024096e-02	exome+100bp flanks	2	35956486	...	15	57	72	4.171709e-07	1.585249e-06	2.002420e-06	-5.698445e+00	...	0	32224022	...	0
TCGA-36-2532-01A-01D-1526-09	47	44	3	34	6.382979e-02	exome+100bp flanks	2	35956486	...	10	32	42	2.781139e-07	8.899646e-07	1.168079e-06	-5.932528e+00	...	0	32224022	...	0
TCGA-36-2533-01A-01D-1526-09	81	79	2	63	2.469136e-02	coding only	1	28825735	...	15	60	75	5.203683e-07	2.081473e-06	2.601842e-06	-5.584719e+00	...	0	28769549	...	0
TCGA-36-2534-01A-01D-1526-09	132	126	6	98	4.545455e-02	exome+100bp flanks	2	35956486	...	26	96	122	7.230962e-07	2.669894e-06	3.392990e-06	-5.469417e+00	...	0	32224022	...	0
TCGA-36-2537-01A-01D-1526-09	47	47	0	29	0	exome+100bp flanks	2	35956486	...	17	25	42	4.727937e-07	6.952849e-07	1.168079e-06	-5.932528e+00	...	0	32224022	...	0
TCGA-36-2538-01A-01D-1526-09	50	47	3	37	6.000000e-02	exome+100bp flanks	2	35956486	...	9	37	46	2.503025e-07	1.029022e-06	1.279324e-06	-5.893019e+00	...	0	32224022	...	0
TCGA-36-2539-01A-01D-1526-09	71	68	3	49	4.225352e-02	exome+100bp flanks	2	35956486	...	16	45	61	4.449823e-07	1.251513e-06	1.696495e-06	-5.770447e+00	...	0	32224022	...	0
TCGA-36-2540-01A-01D-1526-09	8	7	1	5	1.250000e-01	exome+100bp flanks	2	35956486	...	2	5	7	5.562279e-08	1.390570e-07	1.946798e-07	-6.710679e+00	...	0	32224022	...	0
TCGA-36-2542-01A-01D-1526-09	73	73	0	58	0	coding only	1	28825735	...	14	55	69	4.856771e-07	1.908017e-06	2.393694e-06	-5.620931e+00	...	0	28769549	...	0
TCGA-36-2543-01A-01D-1526-09	74	69	5	53	6.756757e-02	exome+100bp flanks	2	35956486	...	15	51	66	4.171709e-07	1.418381e-06	1.835552e-06	-5.736233e+00	...	0	32224022	...	0
TCGA-36-2544-01A-01D-1526-09	73	68	5	55	6.849315e-02	exome+100bp flanks	2	35956486	...	12	51	63	3.337367e-07	1.418381e-06	1.752118e-06	-5.756437e+00	...	0	32224022	...	0
TCGA-36-2545-01A-01D-1526-09	70	65	5	51	7.142857e-02	exome+100bp flanks	2	35956486	...	14	45	59	3.893595e-07	1.251513e-06	1.640872e-06	-5.784925e+00	...	0	32224022	...	0
TCGA-36-2547-01A-01D-1526-09	146	143	3	114	2.054795e-02	coding only	1	28825735	...	27	110	137	9.366630e-07	3.816035e-06	4.752698e-06	-5.323060e+00	...	0	28769549	...	0
TCGA-36-2548-01A-01D-1526-09	48	46	2	37	4.166667e-02	exome+100bp flanks	2	35956486	...	9	37	46	2.503025e-07	1.029022e-06	1.279324e-06	-5.893019e+00	...	0	32224022	...	0
TCGA-36-2551-01A-01D-1526-09	37	32	5	19	1.351351e-01	exome+100bp flanks	2	35956486	...	13	18	31	3.615481e-07	5.006051e-07	8.621532e-07	-6.064416e+00	...	0	32224022	...	0
TCGA-36-2552-01A-01D-1526-09	72	69	3	47	4.166667e-02	exome+100bp flanks	2	35956486	...	20	46	66	5.562279e-07	1.279324e-06	1.835552e-06	-5.736233e+00	...	0	32224022	...	0
TCGA-42-2582-01A-01D-1526-09	88	85	3	74	3.409091e-02	exome+100bp flanks	2	35956486	...	9	70	79	2.503025e-07	1.946798e-06	2.197100e-06	-5.658150e+00	...	0	32224022	...	0
TCGA-42-2587-01A-01D-1526-09	141	134	7	107	4.964539e-02	exome+100bp flanks	2	35956486	...	24	103	127	6.674735e-07	2.864574e-06	3.532047e-06	-5.451974e+00	...	0	32224022	...	0
TCGA-42-2588-01A-01D-1526-09	38	34	4	26	1.052632e-01	exome+100bp flanks	2	35956486	...	8	24	32	2.224912e-07	6.674735e-07	8.899646e-07	-6.050627e+00	...	0	32224022	...	0
TCGA-42-2589-01A-01D-1526-09	87	80	7	66	8.045977e-02	exome+100bp flanks	2	35956486	...	14	65	79	3.893595e-07	1.807741e-06	2.197100e-06	-5.658150e+00	...	0	32224022	...	0
TCGA-42-2590-01A-01D-1526-09	57	54	3	44	5.263158e-02	exome+100bp flanks	2	35956486	...	9	41	50	2.503025e-07	1.140267e-06	1.390570e-06	-5.856807e+00	...	0	32224022	...	0
TCGA-42-2591-01A-01D-1526-09	77	72	5	52	6.493506e-02	exome+100bp flanks	2	35956486	...	18	49	67	5.006051e-07	1.362758e-06	1.863363e-06	-5.729702e+00	...	0	32224022	...	0
TCGA-57-1582-01A-01W-0615-10	67	67	0	45	0	coding only	1	28825735	...	22	41	65	7.632069e-07	1.422340e-06	2.254929e-06	-5.646867e+00	...	2	28769549	...	6.951795e-08
TCGA-57-1583-01A-01W-0615-10	8	8	0	7	0	exome+100bp flanks	2	35956486	...	1	5	8	2.781139e-08	1.390570e-07	2.224912e-07	-6.652687e+00	...	2	32224022	...	6.206550e-08
TCGA-57-1584-01A-01W-0615-10	31	31	0	26	0	exome+100bp flanks	2	35956486	...	5	25	31	1.390570e-07	6.952849e-07	8.621532e-07	-6.064416e+00	...	1	32224022	...	3.103275e-08
TCGA-57-1586-01A-02W-0633-09	26	21	5	16	1.923077e-01	exome+100bp flanks	2	35956486	...	2	14	16	5.562279e-08	3.893595e-07	4.449823e-07	-6.351657e+00	...	0	32224022	...	0
TCGA-57-1993-01A-01W-0699-08	45	45	0	33	0	exome+100bp flanks	2	35956486	...	11	33	44	3.059253e-07	9.177760e-07	1.223701e-06	-5.912325e+00	...	0	32224022	...	0
TCGA-59-2348-01A-01W-0799-08	72	72	0	52	0	coding only	1	28825735	...	20	51	71	6.938245e-07	1.769252e-06	2.463077e-06	-5.608522e+00	...	0	28769549	...	0
TCGA-59-2350-01A-01W-0799-08	8	8	0	6	0	exome+100bp flanks	2	35956486	...	2	5	8	5.562279e-08	1.390570e-07	2.224912e-07	-6.652687e+00	...	1	32224022	...	3.103275e-08
TCGA-59-2351-01A-01W-0799-08	74	74	0	54	0	coding only	1	28825735	...	19	52	72	6.591332e-07	1.803944e-06	2.497768e-06	-5.602448e+00	...	1	28769549	...	3.475897e-08
TCGA-59-2352-01A-01W-0799-08	73	73	0	55	0	coding only	1	28825735	...	18	54	72	6.244420e-07	1.873326e-06	2.497768e-06	-5.602448e+00	...	0	28769549	...	0
TCGA-59-2354-01A-01W-0799-08	51	51	0	33	0	coding only	1	28825735	...	18	33	51	6.244420e-07	1.144810e-06	1.769252e-06	-5.752210e+00	...	0	28769549	...	0
TCGA-59-2355-01A-01W-0799-08	20	20	0	17	0	exome+100bp flanks	2	35956486	...	3	17	20	8.343418e-08	4.727937e-07	5.562279e-07	-6.254747e+00	...	0	32224022	...	0
TCGA-59-2363-01A-01W-0799-08	78	78	0	58	0	coding only	1	28825735	...	20	57	77	6.938245e-07	1.977400e-06	2.671224e-06	-5.573290e+00	...	0	28769549	...	0
TCGA-59-2372-01A-01D-1526-09	93	88	5	70	5.376344e-02	exome+100bp flanks	2	35956486	...	17	67	84	4.727937e-07	1.863363e-06	2.336157e-06	-5.631498e+00	...	0	32224022	...	0
TCGA-61-1722-01A-01D-1556-09	72	69	3	49	4.166667e-02	exome+100bp flanks	2	35956486	...	17	48	65	4.727937e-07	1.334947e-06	1.807741e-06	-5.742864e+00	...	0	32224022	...	0
TCGA-61-1725-01A-01W-0639-09	60	56	4	48	6.666667e-02	exome+100bp flanks	2	35956486	...	7	45	52	1.946798e-07	1.251513e-06	1.446192e-06	-5.839774e+00	...	0	32224022	...	0
TCGA-61-1727-01A-01W-0639-09	135	129	6	105	4.444444e-02	exome+100bp flanks	2	35956486	...	23	93	123	6.396621e-07	2.586460e-06	3.420801e-06	-5.465872e+00	...	7	32224022	...	2.172292e-07
TCGA-61-1728-01A-01W-0699-08	13	13	0	7	0	exome+100bp flanks	2	35956486	...	6	7	13	1.668684e-07	1.946798e-07	3.615481e-07	-6.441834e+00	...	0	32224022	...	0
TCGA-61-1730-01A-01W-0639-09	56	52	4	41	7.142857e-02	exome+100bp flanks	2	35956486	...	10	35	48	2.781139e-07	9.733988e-07	1.334947e-06	-5.874536e+00	...	3	32224022	...	9.309825e-08
TCGA-61-1733-01A-01W-0639-09	57	57	0	40	0	coding only	1	28825735	...	16	37	54	5.550596e-07	1.283575e-06	1.873326e-06	-5.727387e+00	...	1	28769549	...	3.475897e-08
TCGA-61-1736-01B-01W-0722-08	24	24	0	17	0	exome+100bp flanks	2	35956486	...	7	16	24	1.946798e-07	4.449823e-07	6.674735e-07	-6.175566e+00	...	1	32224022	...	3.103275e-08
TCGA-61-1737-01A-01W-0639-09	89	81	8	65	8.988764e-02	exome+100bp flanks	2	35956486	...	15	57	79	4.171709e-07	1.585249e-06	2.197100e-06	-5.658150e+00	...	7	32224022	...	2.172292e-07
TCGA-61-1738-01A-01W-0639-09	65	60	5	42	7.692308e-02	exome+100bp flanks	2	35956486	...	15	41	56	4.171709e-07	1.140267e-06	1.557438e-06	-5.807589e+00	...	0	32224022	...	0
TCGA-61-1740-01A-01W-0639-09	199	190	9	139	4.522613e-02	exome+100bp flanks	2	35956486	...	50	118	178	1.390570e-06	3.281744e-06	4.950428e-06	-5.305357e+00	...	9	32224022	...	2.792947e-07
TCGA-61-1741-01A-02W-0639-09	41	39	2	28	4.878049e-02	exome+100bp flanks	2	35956486	...	10	26	36	2.781139e-07	7.230962e-07	1.001210e-06	-5.999475e+00	...	0	32224022	...	0
TCGA-61-1895-01A-01W-0639-09	64	60	4	52	6.250000e-02	exome+100bp flanks	2	35956486	...	7	41	56	1.946798e-07	1.140267e-06	1.557438e-06	-5.807589e+00	...	8	32224022	...	2.482620e-07
TCGA-61-1899-01A-01W-0639-09	64	58	6	45	9.375000e-02	exome+100bp flanks	2	35956486	...	13	37	53	3.615481e-07	1.029022e-06	1.474004e-06	-5.831501e+00	...	3	32224022	...	9.309825e-08
TCGA-61-1900-01A-01W-0639-09	111	99	12	77	1.081081e-01	exome+100bp flanks	2	35956486	...	20	59	89	5.562279e-07	1.640872e-06	2.475214e-06	-5.606387e+00	...	10	32224022	...	3.103275e-07
TCGA-61-1901-01A-01W-0639-09	63	55	8	40	1.269841e-01	exome+100bp flanks	2	35956486	...	13	35	51	3.615481e-07	9.733988e-07	1.418381e-06	-5.848207e+00	...	3	32224022	...	9.309825e-08
TCGA-61-1903-01A-01W-0639-09	56	53	3	44	5.357143e-02	exome+100bp flanks	2	35956486	...	6	40	48	1.668684e-07	1.112456e-06	1.334947e-06	-5.874536e+00	...	2	32224022	...	6.206550e-08
TCGA-61-1904-01A-01W-0639-09	93	92	1	66	1.075269e-02	coding only	1	28825735	...	26	63	89	9.019718e-07	2.185547e-06	3.087519e-06	-5.510390e+00	...	0	28769549	...	0
TCGA-61-1906-01A-01W-0639-09	59	56	3	43	5.084746e-02	exome+100bp flanks	2	35956486	...	12	40	52	3.337367e-07	1.112456e-06	1.446192e-06	-5.839774e+00	...	0	32224022	...	0
TCGA-61-1907-01A-01W-0639-09	117	114	3	88	2.564103e-02	coding only	1	28825735	...	24	76	106	8.325894e-07	2.636533e-06	3.677270e-06	-5.434475e+00	...	6	28769549	...	2.085538e-07
TCGA-61-1910-01A-01W-0639-09	138	131	7	89	5.072464e-02	exome+100bp flanks	2	35956486	...	41	79	123	1.140267e-06	2.197100e-06	3.420801e-06	-5.465872e+00	...	3	32224022	...	9.309825e-08
TCGA-61-1911-01A-01W-0639-09	39	35	4	25	1.025641e-01	exome+100bp flanks	2	35956486	...	10	21	31	2.781139e-07	5.840393e-07	8.621532e-07	-6.064416e+00	...	0	32224022	...	0
TCGA-61-1913-01A-01W-0639-09	59	56	3	44	5.084746e-02	exome+100bp flanks	2	35956486	...	12	39	53	3.337367e-07	1.084644e-06	1.474004e-06	-5.831501e+00	...	2	32224022	...	6.206550e-08
TCGA-61-1914-01A-01W-0639-09	105	97	8	80	7.619048e-02	exome+100bp flanks	2	35956486	...	17	69	89	4.727937e-07	1.918986e-06	2.475214e-06	-5.606387e+00	...	3	32224022	...	9.309825e-08
TCGA-61-1915-01A-01W-0639-09	102	101	1	72	9.803922e-03	coding only	1	28825735	...	27	61	93	9.366630e-07	2.116165e-06	3.226284e-06	-5.491297e+00	...	5	28769549	...	1.737949e-07
TCGA-61-1919-01	39	39	0	30	0	exome+100bp flanks	2	35956486	...	9	29	39	2.503025e-07	8.065304e-07	1.084644e-06	-5.964713e+00	...	1	32224022	...	3.103275e-08
TCGA-61-1995-01A-01W-0722-08	19	19	0	16	0	exome+100bp flanks	2	35956486	...	3	16	19	8.343418e-08	4.449823e-07	5.284165e-07	-6.277024e+00	...	0	32224022	...	0
TCGA-61-1998-01A-01W-0722-08	63	63	0	51	0	coding only	1	28825735	...	12	49	61	4.162947e-07	1.699870e-06	2.116165e-06	-5.674451e+00	...	0	28769549	...	0
TCGA-61-2000-01A-01W-0722-08	5	5	0	4	0	exome+100bp flanks	2	35956486	...	1	4	5	2.781139e-08	1.112456e-07	1.390570e-07	-6.856807e+00	...	0	32224022	...	0
TCGA-61-2002-01A-01W-0722-08	39	39	0	31	0	exome+100bp flanks	2	35956486	...	8	31	39	2.224912e-07	8.621532e-07	1.084644e-06	-5.964713e+00	...	0	32224022	...	0
TCGA-61-2003-01A-01W-0722-08	24	24	0	18	0	exome+100bp flanks	2	35956486	...	6	18	24	1.668684e-07	5.006051e-07	6.674735e-07	-6.175566e+00	...	0	32224022	...	0
TCGA-61-2008-01A-02W-0722-08	54	54	0	43	0	coding only	1	28825735	...	11	41	53	3.816035e-07	1.422340e-06	1.838635e-06	-5.735505e+00	...	1	28769549	...	3.475897e-08
TCGA-61-2009-01A-01W-0722-08	61	61	0	52	0	coding only	1	28825735	...	9	50	59	3.122210e-07	1.734561e-06	2.046782e-06	-5.688928e+00	...	0	28769549	...	0
TCGA-61-2012-01A-01W-0722-08	86	86	0	67	0	coding only	1	28825735	...	19	67	86	6.591332e-07	2.324312e-06	2.983445e-06	-5.525282e+00	...	0	28769549	...	0
TCGA-61-2016-01A-01W-0722-08	18	18	0	14	0	exome+100bp flanks	2	35956486	...	4	14	18	1.112456e-07	3.893595e-07	5.006051e-07	-6.300505e+00	...	0	32224022	...	0
TCGA-61-2088-01A-01W-0722-08	19	18	1	14	5.263158e-02	exome+100bp flanks	2	35956486	...	4	13	18	1.112456e-07	3.615481e-07	5.006051e-07	-6.300505e+00	...	1	32224022	...	3.103275e-08
TCGA-61-2092-01A-01W-0722-08	28	28	0	19	0	exome+100bp flanks	2	35956486	...	9	19	28	2.503025e-07	5.284165e-07	7.787190e-07	-6.108619e+00	...	0	32224022	...	0
TCGA-61-2094-01A-01W-0722-08	1	1	0	1	0	exome+100bp flanks	2	35956486	...	0	1	1	0	2.781139e-08	2.781139e-08	-7.555777e+00	...	0	32224022	...	0
TCGA-61-2095-01A-01W-0722-08	12	12	0	8	0	exome+100bp flanks	2	35956486	...	4	7	12	1.112456e-07	1.946798e-07	3.337367e-07	-6.476596e+00	...	1	32224022	...	3.103275e-08
TCGA-61-2097-01A-02W-0722-08	45	45	0	35	0	exome+100bp flanks	2	35956486	...	10	35	45	2.781139e-07	9.733988e-07	1.251513e-06	-5.902565e+00	...	0	32224022	...	0
TCGA-61-2101-01A-01W-0722-08	34	34	0	21	0	exome+100bp flanks	2	35956486	...	13	20	34	3.615481e-07	5.562279e-07	9.455874e-07	-6.024298e+00	...	1	32224022	...	3.103275e-08
TCGA-61-2102-01A-01W-0722-08	60	60	0	45	0	coding only	1	28825735	...	15	43	60	5.203683e-07	1.491723e-06	2.081473e-06	-5.681629e+00	...	2	28769549	...	6.951795e-08
TCGA-61-2104-01A-01W-0722-08	3	3	0	3	0	exome+100bp flanks	2	35956486	...	0	3	3	0	8.343418e-08	8.343418e-08	-7.078656e+00	...	0	32224022	...	0
TCGA-61-2109-01A-01W-0722-08	1	1	0	0	0	exome+100bp flanks	2	35956486	...	1	0	1	2.781139e-08	0	2.781139e-08	-7.555777e+00	...	0	32224022	...	0
TCGA-61-2110-01A-01W-0722-08	25	25	0	20	0	exome+100bp flanks	2	35956486	...	5	20	25	1.390570e-07	5.562279e-07	6.952849e-07	-6.157837e+00	...	0	32224022	...	0
TCGA-61-2111-01A-01W-0722-08	34	34	0	28	0	exome+100bp flanks	2	35956486	...	6	28	34	1.668684e-07	7.787190e-07	9.455874e-07	-6.024298e+00	...	0	32224022	...	0
TCGA-61-2113-01A-01W-0722-08	38	38	0	25	0	exome+100bp flanks	2	35956486	...	13	25	38	3.615481e-07	6.952849e-07	1.056833e-06	-5.975994e+00	...	0	32224022	...	0
TCGA-61-2612-01A-01W-1092-09	47	45	2	30	4.255319e-02	exome+100bp flanks	2	35956486	...	15	28	43	4.171709e-07	7.787190e-07	1.195890e-06	-5.922309e+00	...	0	32224022	...	0
TCGA-61-2613-01A-01W-1092-09	79	75	4	55	5.063291e-02	exome+100bp flanks	2	35956486	...	19	55	74	5.284165e-07	1.529627e-06	2.058043e-06	-5.686546e+00	...	0	32224022	...	0
TCGA-61-2614-01A-01W-1092-09	57	55	2	44	3.508772e-02	exome+100bp flanks	2	35956486	...	11	43	54	3.059253e-07	1.195890e-06	1.501815e-06	-5.823383e+00	...	0	32224022	...	0
