[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MUTATION_RATE"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                                       Clinical feature                        
DAYS_TO_DEATH_OR_LAST_FUP              "DAYS_TO_DEATH_OR_LAST_FUP"             
AGE                                    "AGE"                                   
AGE_mutation.rate                      "AGE_mutation rate"                     
PRIMARY_SITE_OF_DISEASE                "PRIMARY_SITE_OF_DISEASE"               
KARNOFSKY_PERFORMANCE_SCORE            "KARNOFSKY_PERFORMANCE_SCORE"           
RADIATIONS_RADIATION_REGIMENINDICATION "RADIATIONS_RADIATION_REGIMENINDICATION"
COMPLETENESS_OF_RESECTION              "COMPLETENESS_OF_RESECTION"             
RACE                                   "RACE"                                  
ETHNICITY                              "ETHNICITY"                             
                                       Statistical test            
DAYS_TO_DEATH_OR_LAST_FUP              "Cox regression test"       
AGE                                    "Spearman correlation test" 
AGE_mutation.rate                      "Linear Regression Analysis"
PRIMARY_SITE_OF_DISEASE                "Kruskal-Wallis test"       
KARNOFSKY_PERFORMANCE_SCORE            "Spearman correlation test" 
RADIATIONS_RADIATION_REGIMENINDICATION "Wilcoxon test"             
COMPLETENESS_OF_RESECTION              "Kruskal-Wallis test"       
RACE                                   "Kruskal-Wallis test"       
ETHNICITY                              "Wilcoxon test"             
                                       Significant variables Associated with   
DAYS_TO_DEATH_OR_LAST_FUP              "N=1"                 "shorter survival"
AGE                                    "N=0"                 " "               
AGE_mutation.rate                      "N=1"                 " "               
PRIMARY_SITE_OF_DISEASE                "N=0"                 " "               
KARNOFSKY_PERFORMANCE_SCORE            "N=0"                 " "               
RADIATIONS_RADIATION_REGIMENINDICATION "N=1"                 "yes"             
COMPLETENESS_OF_RESECTION              "N=0"                 " "               
RACE                                   "N=0"                 " "               
ETHNICITY                              "N=0"                 " "               
                                       &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP              "N=0"                                                                                     
AGE                                    " "                                                                                       
AGE_mutation.rate                      " "                                                                                       
PRIMARY_SITE_OF_DISEASE                " "                                                                                       
KARNOFSKY_PERFORMANCE_SCORE            " "                                                                                       
RADIATIONS_RADIATION_REGIMENINDICATION "N=1"                                                                                     
COMPLETENESS_OF_RESECTION              " "                                                                                       
RACE                                   " "                                                                                       
ETHNICITY                              " "                                                                                       
                                       Associated with        
DAYS_TO_DEATH_OR_LAST_FUP              "longer survival" "N=1"
AGE                                    " "               " "  
AGE_mutation.rate                      " "               " "  
PRIMARY_SITE_OF_DISEASE                " "               " "  
KARNOFSKY_PERFORMANCE_SCORE            " "               " "  
RADIATIONS_RADIATION_REGIMENINDICATION "no"              "N=0"
COMPLETENESS_OF_RESECTION              " "               " "  
RACE                                   " "               " "  
ETHNICITY                              " "               " "  
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
