[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MUTATION_RATE"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
AGE                       "AGE"                      
AGE_mutation.rate         "AGE_mutation rate"        
GENDER                    "GENDER"                   
RACE                      "RACE"                     
ETHNICITY                 "ETHNICITY"                
                          Statistical test             Significant variables
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"        "N=2"                
AGE                       "Spearman correlation test"  "N=2"                
AGE_mutation.rate         "Linear Regression Analysis" "N=2"                
GENDER                    "Wilcoxon test"              "N=1"                
RACE                      "Kruskal-Wallis test"        "N=0"                
ETHNICITY                 "Wilcoxon test"              "N=0"                
                          Associated with   
DAYS_TO_DEATH_OR_LAST_FUP "shorter survival"
AGE                       "older"           
AGE_mutation.rate         " "               
GENDER                    "male"            
RACE                      " "               
ETHNICITY                 " "               
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP "N=2"                                                                                     
AGE                       "N=2"                                                                                     
AGE_mutation.rate         " "                                                                                       
GENDER                    "N=1"                                                                                     
RACE                      " "                                                                                       
ETHNICITY                 " "                                                                                       
                          Associated with        
DAYS_TO_DEATH_OR_LAST_FUP "longer survival" "N=0"
AGE                       "younger"         "N=0"
AGE_mutation.rate         " "               " "  
GENDER                    "female"          "N=0"
RACE                      " "               " "  
ETHNICITY                 " "               " "  
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
