		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	7 (4%)	155	0.11922	0.402	0.78488	0.953	NA	NA	NA	NA	0.67342	0.877	0.82203	0.968	0.89471	1	0.52556	0.777	0.8348	0.971	0.65591	0.866
1q gain	19 (12%)	143	0.00085999	0.016	0.35395	0.671	0.91263	1	1	1	0.48955	0.763	0.59417	0.822	0.90746	1	0.66443	0.872	0.48704	0.763	0.84678	0.977
2p gain	6 (4%)	156	0.50717	0.774	0.0057299	0.0638	0.74753	0.927	1	1	0.24016	0.563	0.34704	0.666	0.13504	0.437	0.33504	0.662	0.1913	0.512	0.46204	0.744
4p gain	4 (2%)	158	0.67556	0.877	0.36653	0.681	NA	NA	NA	NA	0.81925	0.968	0.55198	0.79	0.45102	0.743	0.78926	0.953	0.77027	0.944	1	1
4q gain	3 (2%)	159	0.062229	0.277	0.80263	0.961	NA	NA	NA	NA	0.47168	0.75	0.73855	0.927	0.61466	0.835	0.83645	0.971	0.81365	0.965	0.46336	0.744
5p gain	11 (7%)	151	0.62007	0.836	0.43368	0.741	0.6021	0.827	1	1	0.91594	1	0.6598	0.869	0.85412	0.98	0.61435	0.835	0.82959	0.971	0.21445	0.546
5q gain	7 (4%)	155	0.89648	1	0.0052699	0.0606	NA	NA	NA	NA	0.073069	0.298	0.29731	0.635	0.48409	0.763	0.37958	0.691	0.94142	1	0.28647	0.63
6p gain	15 (9%)	147	0.88666	1	0.25692	0.583	0.10044	0.361	0.2008	0.53	0.30768	0.638	0.37034	0.681	0.23843	0.563	0.30535	0.638	0.56117	0.791	0.5095	0.775
6q gain	8 (5%)	154	0.14777	0.449	0.00177	0.0269	NA	NA	NA	NA	0.03672	0.198	0.11093	0.392	0.12889	0.421	0.18308	0.495	0.080949	0.317	0.2674	0.599
7p gain	27 (17%)	135	0.02124	0.146	0.073789	0.298	0.53303	0.78	0.14892	0.449	0.13943	0.443	0.38123	0.691	0.23926	0.563	0.072649	0.298	0.31555	0.64	0.088389	0.331
7q gain	22 (14%)	140	0.0074299	0.076	0.0062799	0.0688	0.44798	0.741	0.01867	0.136	0.17238	0.484	0.28385	0.628	0.14269	0.444	0.11399	0.398	0.52213	0.777	0.46027	0.744
8p gain	10 (6%)	152	0.01903	0.137	0.36897	0.681	0.81562	0.965	1	1	0.086879	0.331	0.090979	0.336	0.071039	0.298	0.15477	0.452	0.45396	0.744	0.10042	0.361
8q gain	13 (8%)	149	0.24098	0.563	0.75109	0.929	0.5976	0.825	1	1	0.082339	0.319	0.075029	0.3	0.11421	0.398	0.20122	0.53	0.8041	0.961	0.090749	0.336
9p gain	4 (2%)	158	0.2309	0.563	0.070439	0.298	NA	NA	NA	NA	0.15203	0.449	0.22466	0.563	0.29008	0.631	0.25413	0.579	0.30259	0.638	0.51131	0.775
9q gain	3 (2%)	159	0.45989	0.744	0.13915	0.443	NA	NA	NA	NA	0.23968	0.563	0.23939	0.563	0.46208	0.744	0.34625	0.666	0.29337	0.631	0.55711	0.79
10p gain	12 (7%)	150	0.51286	0.775	0.073299	0.298	0.71912	0.915	0.1177	0.402	0.51713	0.775	0.51661	0.775	1	1	0.84189	0.975	0.48881	0.763	0.17857	0.493
10q gain	10 (6%)	152	0.10313	0.369	0.69331	0.894	0.71828	0.915	0.12027	0.403	0.49158	0.763	0.59202	0.821	0.70547	0.906	0.50696	0.774	0.42556	0.736	0.15436	0.452
11p gain	5 (3%)	157	0.087509	0.331	0.51395	0.775	0.83089	0.971	1	1	0.41184	0.723	0.30497	0.638	0.53909	0.784	0.49402	0.763	0.34514	0.666	0.69	0.892
12p gain	11 (7%)	151	0.01097	0.101	0.0073699	0.076	0.49553	0.763	0.11931	0.402	0.33683	0.662	0.32383	0.653	0.01925	0.137	0.21563	0.547	0.13114	0.427	0.42903	0.736
12q gain	14 (9%)	148	0.068649	0.296	0.2254	0.563	0.85055	0.98	0.4905	0.763	0.60273	0.827	0.65325	0.865	0.061219	0.277	0.29098	0.631	0.22281	0.561	0.43607	0.741
13q gain	9 (6%)	153	0.01858	0.136	0.02141	0.146	0.24307	0.565	0.62283	0.836	0.0097399	0.0921	0.0093999	0.0914	0.02403	0.156	0.053549	0.257	0.0096399	0.0921	0.35964	0.678
14q gain	4 (2%)	158	0.061829	0.277	0.3685	0.681	NA	NA	NA	NA	0.55094	0.79	0.55435	0.79	0.28683	0.63	0.78893	0.953	0.76939	0.944	0.87171	0.994
15q gain	14 (9%)	148	0.25033	0.576	0.03256	0.184	0.83713	0.971	0.35017	0.666	0.31439	0.64	0.77015	0.944	0.42716	0.736	0.79174	0.953	0.55682	0.79	0.92534	1
16p gain	6 (4%)	156	0.23904	0.563	0.55723	0.79	NA	NA	NA	NA	0.74412	0.927	0.74021	0.927	0.38432	0.692	0.81518	0.965	0.29226	0.631	0.50151	0.771
16q gain	6 (4%)	156	0.01448	0.119	1	1	NA	NA	NA	NA	0.26983	0.603	0.70055	0.902	1	1	0.76848	0.944	0.39665	0.707	0.42788	0.736
17q gain	5 (3%)	157	0.54462	0.786	0.31242	0.638	0.2196	0.555	0.33674	0.662	0.2998	0.636	0.30407	0.638	0.54075	0.784	0.77385	0.945	0.541	0.784	0.21194	0.544
18p gain	8 (5%)	154	0.14947	0.449	0.22992	0.563	1	1	0.1195	0.402	0.38256	0.691	0.65079	0.864	0.46544	0.745	0.56103	0.791	0.12862	0.421	0.85491	0.98
18q gain	10 (6%)	152	0.34658	0.666	0.58309	0.816	1	1	0.03863	0.206	0.36506	0.681	0.53359	0.78	0.84523	0.977	0.43902	0.741	0.19584	0.52	0.53216	0.78
19p gain	20 (12%)	142	0.01537	0.123	0.076889	0.304	0.40832	0.719	0.78113	0.952	0.74856	0.927	0.64401	0.859	0.27469	0.611	0.9257	1	0.20965	0.543	0.72704	0.922
19q gain	14 (9%)	148	0.15185	0.449	0.0084999	0.0838	0.44343	0.741	0.53884	0.784	0.37556	0.688	0.22846	0.563	0.45942	0.744	0.66684	0.873	0.52337	0.777	0.48946	0.763
20p gain	12 (7%)	150	0.64557	0.859	0.36688	0.681	0.62267	0.836	0.72898	0.922	0.18045	0.493	0.34306	0.666	0.16854	0.475	0.38275	0.691	0.59288	0.821	0.5904	0.821
20q gain	10 (6%)	152	0.54222	0.784	0.16652	0.475	0.48501	0.763	1	1	0.0302	0.18	0.061969	0.277	0.0391	0.206	0.077029	0.304	0.03908	0.206	0.51439	0.775
21q gain	3 (2%)	159	0.25112	0.576	0.13638	0.439	NA	NA	NA	NA	0.23787	0.563	0.068189	0.296	0.184	0.495	0.40875	0.719	0.29103	0.631	0.80599	0.961
22q gain	3 (2%)	159	0.25234	0.577	0.081669	0.318	NA	NA	NA	NA	0.23772	0.563	0.14981	0.449	0.18046	0.493	0.40752	0.719	0.056279	0.262	0.80678	0.961
xp gain	6 (4%)	156	0.15213	0.449	0.01804	0.135	NA	NA	NA	NA	0.03503	0.195	0.01679	0.132	0.15725	0.454	0.069729	0.297	0.0202	0.141	0.29921	0.636
xq gain	5 (3%)	157	0.17743	0.493	0.04467	0.225	NA	NA	NA	NA	0.052769	0.256	0.054469	0.258	0.1419	0.444	0.067859	0.296	0.0305	0.18	0.096629	0.353
1p loss	98 (60%)	64	9.9999e-06	0.00115	0.01524	0.123	0.0056199	0.0636	0.00012	0.0046	0.00291	0.0372	0.00183	0.0269	5.9999e-05	0.00244	0.01358	0.114	0.00056999	0.0119	0.13666	0.439
1q loss	27 (17%)	135	0.89509	1	0.30891	0.638	0.90817	1	0.1478	0.449	0.1237	0.412	0.51767	0.775	0.66288	0.871	0.26397	0.593	0.03127	0.183	0.23881	0.563
2p loss	10 (6%)	152	0.38218	0.691	0.075119	0.3	0.74728	0.927	0.42624	0.736	0.00464	0.0543	0.18037	0.493	0.19513	0.52	0.00074999	0.0144	0.14691	0.449	0.0074899	0.076
2q loss	13 (8%)	149	0.82195	0.968	0.4498	0.742	0.74839	0.927	0.42745	0.736	0.41656	0.728	0.14278	0.444	0.53031	0.78	0.097649	0.355	0.32762	0.657	0.34045	0.665
3p loss	62 (38%)	100	0.00060999	0.0124	0.095279	0.35	0.0034	0.0421	0.25832	0.584	0.00032	0.00843	9.9999e-06	0.00115	0.00088999	0.0162	0.00121	0.0199	0.00025	0.00747	0.00018	0.00654
3q loss	88 (54%)	74	5.9999e-05	0.00244	0.52087	0.777	0.056489	0.262	0.02609	0.164	0.04291	0.219	9.9999e-06	0.00115	0.00354	0.0429	0.03045	0.18	0.0119	0.108	0.01601	0.127
4p loss	11 (7%)	151	0.00342	0.0421	0.14561	0.449	0.46955	0.75	0.34995	0.666	0.0067999	0.0733	0.18442	0.495	0.29321	0.631	0.39084	0.699	0.057999	0.267	0.14559	0.449
4q loss	10 (6%)	152	0.072949	0.298	0.24106	0.563	0.47197	0.75	0.34966	0.666	0.01753	0.134	0.3381	0.663	0.41668	0.728	0.52463	0.777	0.32749	0.657	0.32273	0.653
5p loss	5 (3%)	157	0.064429	0.285	0.37597	0.688	NA	NA	NA	NA	0.03634	0.197	0.03617	0.197	0.14139	0.444	0.1681	0.475	0.16811	0.475	0.054639	0.258
5q loss	7 (4%)	155	0.38578	0.693	0.78458	0.953	0.49442	0.763	1	1	0.64635	0.859	0.52447	0.777	0.89557	1	0.35839	0.677	0.22673	0.563	0.3038	0.638
6q loss	19 (12%)	143	0.00096999	0.0167	0.00049	0.0117	0.02018	0.141	0.11604	0.399	0.00049	0.0117	5e-05	0.00244	0.00033	0.00843	2e-05	0.00138	0.01237	0.111	0.00237	0.0321
7q loss	6 (4%)	156	0.03222	0.184	0.48027	0.762	NA	NA	NA	NA	0.0404	0.211	0.17385	0.486	0.02978	0.18	0.02485	0.159	0.24707	0.572	0.12866	0.421
8p loss	20 (12%)	142	0.02163	0.146	0.39098	0.699	0.44524	0.741	0.815	0.965	0.12417	0.412	0.10778	0.383	0.71472	0.915	0.95232	1	0.2797	0.621	0.48782	0.763
8q loss	12 (7%)	150	0.04341	0.22	0.73938	0.927	0.15131	0.449	1	1	0.32999	0.66	0.61987	0.836	0.11142	0.392	0.4369	0.741	0.9275	1	0.42707	0.736
9p loss	11 (7%)	151	0.0492	0.244	0.71788	0.915	0.084499	0.324	0.01753	0.134	0.18212	0.495	0.18081	0.493	0.67241	0.877	0.068639	0.296	0.54806	0.789	0.31149	0.638
9q loss	11 (7%)	151	0.0078599	0.0786	0.61016	0.834	0.45628	0.744	0.34859	0.666	0.51124	0.775	0.62682	0.84	0.72466	0.921	0.40052	0.712	0.82822	0.971	0.4408	0.741
11p loss	54 (33%)	108	9.9999e-06	0.00115	0.00055999	0.0119	0.00115	0.0194	0.14038	0.444	0.00025	0.00747	9.9999e-06	0.00115	3e-05	0.00172	2e-05	0.00138	5e-05	0.00244	0.00247	0.0328
11q loss	40 (25%)	122	2e-05	0.00138	0.069269	0.297	0.02308	0.152	0.11562	0.399	0.00026	0.00747	0.00072999	0.0144	0.00019	0.00655	0.00031	0.00843	2e-04	0.00657	0.0262	0.164
13q loss	8 (5%)	154	0.03607	0.197	0.44697	0.741	0.01254	0.111	0.67113	0.877	0.31183	0.638	0.11613	0.399	0.5279	0.778	0.22638	0.563	0.54893	0.789	0.46333	0.744
14q loss	20 (12%)	142	0.23676	0.563	0.053189	0.257	0.16765	0.475	0.20416	0.536	0.31006	0.638	0.79273	0.953	0.15541	0.452	0.00198	0.0285	0.02897	0.177	0.00157	0.0246
15q loss	3 (2%)	159	0.3476	0.666	0.33264	0.661	NA	NA	NA	NA	1	1	0.86566	0.99	0.61651	0.836	0.83623	0.971	0.90017	1	1	1
16p loss	9 (6%)	153	0.33468	0.662	0.04265	0.219	0.67731	0.877	0.44524	0.741	0.55389	0.79	0.36103	0.679	0.2493	0.575	0.40254	0.714	0.67753	0.877	0.77143	0.944
16q loss	5 (3%)	157	0.73942	0.927	0.44504	0.741	0.74622	0.927	0.78567	0.953	0.4458	0.741	0.0276	0.17	0.21018	0.543	0.58977	0.821	0.090549	0.336	0.82886	0.971
17p loss	61 (38%)	101	0.00050999	0.0117	0.00236	0.0321	0.49237	0.763	0.15858	0.456	0.071409	0.298	0.03344	0.188	0.02289	0.152	0.02224	0.149	0.21442	0.546	0.01387	0.115
17q loss	19 (12%)	143	5.9999e-05	0.00244	0.90278	1	0.15643	0.454	0.03235	0.184	0.29684	0.635	0.2305	0.563	0.37012	0.681	0.087939	0.331	0.88174	1	0.2615	0.59
18p loss	16 (10%)	146	0.50306	0.771	0.74378	0.927	0.4353	0.741	0.20805	0.542	0.85512	0.98	0.75788	0.935	0.89286	1	0.31222	0.638	0.60683	0.831	0.45487	0.744
18q loss	6 (4%)	156	0.28776	0.63	0.87383	0.995	0.83292	0.971	0.055009	0.258	0.58444	0.816	0.65629	0.866	0.57284	0.805	0.58257	0.816	0.43202	0.74	0.86679	0.99
19q loss	6 (4%)	156	0.24155	0.563	1	1	NA	NA	NA	NA	0.94203	1	0.94336	1	0.33205	0.661	0.62256	0.836	0.92675	1	0.93189	1
20q loss	3 (2%)	159	1	1	1	1	NA	NA	NA	NA	1	1	0.64308	0.859	0.79028	0.953	1	1	0.72961	0.922	0.80605	0.961
21q loss	36 (22%)	126	0.20644	0.54	0.050569	0.249	0.31027	0.638	0.45466	0.744	0.04136	0.215	0.93862	1	0.56149	0.791	0.60308	0.827	0.9079	1	0.71668	0.915
22q loss	58 (36%)	104	9.9999e-06	0.00115	0.01272	0.111	0.36504	0.681	0.084239	0.324	0.03222	0.184	0.00207	0.0291	0.0476	0.238	0.051539	0.252	0.02686	0.167	0.0244	0.157
xp loss	48 (30%)	114	2e-05	0.00138	0.00181	0.0269	0.058369	0.267	0.44112	0.741	0.01294	0.112	0.00095999	0.0167	0.00254	0.0331	0.01779	0.135	0.2401	0.563	0.01816	0.135
xq loss	49 (30%)	113	3e-05	0.00172	0.0014	0.0225	0.072429	0.298	0.61173	0.834	0.0073499	0.076	0.00054999	0.0119	0.00375	0.0446	0.01038	0.0968	0.21187	0.544	0.01328	0.113
