[1] "started"
[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/analysis.results.RData"
[1] "CLI_CLUS"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
                       V1.D                          V2 
            "Time to Death"            "YEARS_TO_BIRTH" 
                         V3                          V4 
        "PATHOLOGY_T_STAGE"         "PATHOLOGY_N_STAGE" 
                         V5                          V6 
        "HISTOLOGICAL_TYPE" "COMPLETENESS_OF_RESECTION" 
                         V7                          V8 
    "NUMBER_OF_LYMPH_NODES"    "GLEASON_SCORE_COMBINED" 
                         V9                         V10 
    "GLEASON_SCORE_PRIMARY"   "GLEASON_SCORE_SECONDARY" 
                        V11                         V12 
            "GLEASON_SCORE"          "PSA_RESULT_PREOP" 
                        V13                         V14 
                "PSA_VALUE"                      "RACE" 
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[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D2V4.png"
[1] TRUE
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[1] TRUE
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[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V4.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V5.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V6.png"
[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V7.png"
[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V8.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V9.png"
[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V10.png"
[1] TRUE
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[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V12.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V13.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D3V14.png"
[1] TRUE
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[1] TRUE
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[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D4V7.png"
[1] TRUE
[1] "symlink"
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[1] TRUE
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[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D4V10.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D4V11.png"
[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D4V12.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D4V13.png"
[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/15117608/D4V14.png"
[1] TRUE
[1] "symlink"
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