[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MRNASEQ_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
                          Clinical feature           
DAYS_TO_DEATH_OR_LAST_FUP "DAYS_TO_DEATH_OR_LAST_FUP"
YEARS_TO_BIRTH            "YEARS_TO_BIRTH"           
PATHOLOGY_T_STAGE         "PATHOLOGY_T_STAGE"        
PATHOLOGY_N_STAGE         "PATHOLOGY_N_STAGE"        
HISTOLOGICAL_TYPE         "HISTOLOGICAL_TYPE"        
COMPLETENESS_OF_RESECTION "COMPLETENESS_OF_RESECTION"
NUMBER_OF_LYMPH_NODES     "NUMBER_OF_LYMPH_NODES"    
GLEASON_SCORE_COMBINED    "GLEASON_SCORE_COMBINED"   
GLEASON_SCORE_PRIMARY     "GLEASON_SCORE_PRIMARY"    
GLEASON_SCORE_SECONDARY   "GLEASON_SCORE_SECONDARY"  
GLEASON_SCORE             "GLEASON_SCORE"            
PSA_RESULT_PREOP          "PSA_RESULT_PREOP"         
PSA_VALUE                 "PSA_VALUE"                
RACE                      "RACE"                     
                          Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP "Cox regression test"       "N=0"            
YEARS_TO_BIRTH            "Spearman correlation test" "N=30"           
PATHOLOGY_T_STAGE         "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE         "Wilcoxon test"             "N=30"           
HISTOLOGICAL_TYPE         "Wilcoxon test"             "N=0"            
COMPLETENESS_OF_RESECTION "Kruskal-Wallis test"       "N=30"           
NUMBER_OF_LYMPH_NODES     "Spearman correlation test" "N=30"           
GLEASON_SCORE_COMBINED    "Spearman correlation test" "N=30"           
GLEASON_SCORE_PRIMARY     "Spearman correlation test" "N=30"           
GLEASON_SCORE_SECONDARY   "Spearman correlation test" "N=30"           
GLEASON_SCORE             "Spearman correlation test" "N=30"           
PSA_RESULT_PREOP          "Spearman correlation test" "N=30"           
PSA_VALUE                 "Spearman correlation test" "N=30"           
RACE                      "Kruskal-Wallis test"       "N=0"            
                          Associated with               
DAYS_TO_DEATH_OR_LAST_FUP " "                           
YEARS_TO_BIRTH            "older"                       
PATHOLOGY_T_STAGE         "higher stage"                
PATHOLOGY_N_STAGE         "n1"                          
HISTOLOGICAL_TYPE         " "                           
COMPLETENESS_OF_RESECTION " "                           
NUMBER_OF_LYMPH_NODES     "higher number_of_lymph_nodes"
GLEASON_SCORE_COMBINED    "higher score"                
GLEASON_SCORE_PRIMARY     "higher score"                
GLEASON_SCORE_SECONDARY   "higher score"                
GLEASON_SCORE             "higher score"                
PSA_RESULT_PREOP          "higher psa_result_preop"     
PSA_VALUE                 "higher psa_value"            
RACE                      " "                           
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP " "                                                                                       
YEARS_TO_BIRTH            "N=15"                                                                                    
PATHOLOGY_T_STAGE         "N=20"                                                                                    
PATHOLOGY_N_STAGE         "N=30"                                                                                    
HISTOLOGICAL_TYPE         " "                                                                                       
COMPLETENESS_OF_RESECTION " "                                                                                       
NUMBER_OF_LYMPH_NODES     "N=16"                                                                                    
GLEASON_SCORE_COMBINED    "N=26"                                                                                    
GLEASON_SCORE_PRIMARY     "N=22"                                                                                    
GLEASON_SCORE_SECONDARY   "N=22"                                                                                    
GLEASON_SCORE             "N=27"                                                                                    
PSA_RESULT_PREOP          "N=17"                                                                                    
PSA_VALUE                 "N=24"                                                                                    
RACE                      " "                                                                                       
                          Associated with                     
DAYS_TO_DEATH_OR_LAST_FUP " "                           " "   
YEARS_TO_BIRTH            "younger"                     "N=15"
PATHOLOGY_T_STAGE         "lower stage"                 "N=10"
PATHOLOGY_N_STAGE         "n0"                          "N=0" 
HISTOLOGICAL_TYPE         " "                           " "   
COMPLETENESS_OF_RESECTION " "                           " "   
NUMBER_OF_LYMPH_NODES     "lower number_of_lymph_nodes" "N=14"
GLEASON_SCORE_COMBINED    "lower score"                 "N=4" 
GLEASON_SCORE_PRIMARY     "lower score"                 "N=8" 
GLEASON_SCORE_SECONDARY   "lower score"                 "N=8" 
GLEASON_SCORE             "lower score"                 "N=3" 
PSA_RESULT_PREOP          "lower psa_result_preop"      "N=13"
PSA_VALUE                 "lower psa_value"             "N=6" 
RACE                      " "                           " "   
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
