		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	12 (7%)	153	0.51004	0.899	0.94082	1	0.8289	1	0.52737	0.906	0.03091	0.337	0.01732	0.267	0.3316	0.8	0.59512	0.929	0.9405	1	0.45887	0.889	0.86975	1	0.65271	0.951
1q gain	34 (21%)	131	0.58334	0.924	0.65042	0.951	0.136	0.618	0.31143	0.771	0.068699	0.496	0.21195	0.71	0.45235	0.885	0.99568	1	0.53552	0.907	0.87877	1	0.86962	1	0.36588	0.826
2p gain	41 (25%)	124	0.50777	0.899	0.01974	0.267	0.25906	0.721	0.025	0.311	0.66908	0.957	0.64137	0.951	0.04651	0.439	0.01906	0.267	0.18823	0.698	0.076069	0.514	0.72645	0.987	0.50067	0.899
2q gain	43 (26%)	122	0.092959	0.553	0.057469	0.481	0.12107	0.597	0.060969	0.488	0.72148	0.987	0.82792	1	0.088109	0.551	0.0025	0.0828	0.21851	0.71	0.3071	0.768	0.15775	0.652	0.18835	0.698
3p gain	27 (16%)	138	1	1	0.90207	1	0.00061999	0.0397	0.65471	0.951	0.087419	0.551	0.45857	0.889	0.11031	0.581	0.92793	1	0.37834	0.826	0.36105	0.826	0.65434	0.951	0.82498	1
3q gain	34 (21%)	131	0.60538	0.934	0.61159	0.938	0.00018	0.0192	0.86838	1	0.25087	0.717	0.42306	0.866	0.10297	0.567	0.7378	0.989	0.22032	0.71	0.31539	0.776	0.65905	0.951	0.89647	1
4p gain	9 (5%)	156	1	1	0.79123	1	0.96544	1	0.76455	1	0.089709	0.552	0.17244	0.672	0.48774	0.899	0.62751	0.947	0.2233	0.71	0.37376	0.826	0.74359	0.989	0.94936	1
4q gain	5 (3%)	160	0.29795	0.763	0.64821	0.951	0.67494	0.958	NA	NA	0.21906	0.71	0.48825	0.899	0.71226	0.984	1	1	0.88915	1	1	1	NA	NA	NA	NA
5p gain	36 (22%)	129	0.20354	0.71	0.098049	0.556	0.00174	0.0795	0.098509	0.556	0.21468	0.71	0.68948	0.967	0.11287	0.582	5.9999e-05	0.0072	0.19029	0.703	0.92311	1	0.49216	0.899	0.62676	0.947
5q gain	24 (15%)	141	0.2438	0.717	0.087779	0.551	0.0072099	0.169	0.073859	0.51	0.18647	0.697	0.96079	1	0.44862	0.885	0.091099	0.553	0.24817	0.717	0.52224	0.902	1	1	0.65191	0.951
6p gain	41 (25%)	124	0.33489	0.801	0.56463	0.912	0.0088999	0.178	0.00328	0.0984	0.77337	1	0.25704	0.721	0.79737	1	0.46738	0.892	0.2407	0.715	0.29766	0.763	0.27779	0.745	0.81103	1
6q gain	36 (22%)	129	0.67079	0.957	0.22984	0.71	0.01739	0.267	0.0067099	0.169	0.84246	1	0.47006	0.894	0.67257	0.958	0.50904	0.899	0.34108	0.803	0.58165	0.923	0.20161	0.71	0.56278	0.912
7p gain	102 (62%)	63	0.00229	0.0828	0.00261	0.0835	9.9999e-06	0.0048	0.00316	0.0979	0.48628	0.899	0.37566	0.826	0.00024	0.023	2e-05	0.0048	0.0415	0.419	0.097939	0.556	0.59357	0.929	0.81404	1
7q gain	85 (52%)	80	0.04596	0.439	0.0081299	0.174	2e-05	0.0048	0.13975	0.619	0.61886	0.941	0.94828	1	0.0045	0.123	0.00213	0.0828	0.50111	0.899	0.82744	1	0.85639	1	0.85553	1
8p gain	42 (25%)	123	0.42159	0.866	0.23564	0.71	0.00224	0.0828	0.51746	0.899	0.45253	0.885	0.093279	0.553	0.51356	0.899	0.3406	0.803	0.81412	1	0.28696	0.749	0.91798	1	0.13987	0.619
8q gain	89 (54%)	76	0.03638	0.384	0.27657	0.745	5e-05	0.0072	0.20998	0.71	0.54807	0.912	0.78819	1	0.6043	0.934	0.22043	0.71	0.24447	0.717	0.067509	0.494	0.0208	0.27	0.37324	0.826
9p gain	42 (25%)	123	0.01756	0.267	0.19604	0.71	0.44209	0.881	0.16344	0.662	0.65237	0.951	0.2287	0.71	0.051249	0.457	0.27847	0.745	0.27284	0.745	0.32769	0.792	0.86388	1	0.86743	1
9q gain	33 (20%)	132	0.01526	0.253	0.21091	0.71	0.2799	0.745	0.4682	0.892	0.5605	0.912	0.097949	0.556	0.3711	0.826	0.090859	0.553	0.78636	1	0.62232	0.942	0.82989	1	0.93156	1
10p gain	13 (8%)	152	1	1	0.91795	1	0.33619	0.801	0.71626	0.985	0.66558	0.957	0.75006	0.989	0.52209	0.902	0.12636	0.607	0.65288	0.951	0.91894	1	0.61564	0.941	0.79109	1
10q gain	7 (4%)	158	0.51837	0.899	0.081659	0.533	0.25357	0.72	1	1	1	1	0.87236	1	1	1	0.50262	0.899	0.77449	1	0.86394	1	NA	NA	NA	NA
11p gain	32 (19%)	133	0.13418	0.618	0.38924	0.836	0.0085199	0.174	0.41863	0.866	0.71961	0.987	0.35899	0.826	0.13315	0.618	0.14135	0.62	0.02052	0.27	0.20887	0.71	0.65692	0.951	0.53187	0.907
11q gain	26 (16%)	139	0.23676	0.71	0.42844	0.87	0.00202	0.0828	0.01947	0.267	0.57409	0.917	0.30173	0.766	0.00249	0.0828	0.00043	0.035	0.02526	0.311	0.58868	0.929	0.11921	0.596	0.1582	0.652
12p gain	33 (20%)	132	0.69184	0.968	0.48135	0.899	0.23518	0.71	0.7279	0.987	0.181	0.688	0.12213	0.598	0.083959	0.541	0.20217	0.71	0.37365	0.826	0.55003	0.912	0.28094	0.745	0.86913	1
12q gain	24 (15%)	141	0.77574	1	0.51856	0.899	0.73955	0.989	0.30738	0.768	0.26492	0.733	0.21267	0.71	0.04201	0.42	0.50976	0.899	0.22424	0.71	0.74201	0.989	0.053179	0.464	0.94948	1
13q gain	113 (68%)	52	0.28486	0.749	0.37639	0.826	9.9999e-06	0.0048	0.071339	0.5	0.83618	1	0.3174	0.777	0.00050999	0.035	0.00047	0.035	0.00351	0.102	0.065959	0.494	0.71143	0.984	0.47557	0.897
14q gain	8 (5%)	157	0.83204	1	0.91626	1	0.11244	0.582	0.22347	0.71	0.51853	0.899	0.54371	0.912	0.49373	0.899	0.913	1	0.12925	0.614	0.8617	1	NA	NA	NA	NA
15q gain	3 (2%)	162	NA	NA	NA	NA	0.41731	0.866	0.48053	0.899	NA	NA	NA	NA	0.35615	0.826	0.64418	0.951	NA	NA	NA	NA	NA	NA	NA	NA
16p gain	41 (25%)	124	0.14432	0.621	0.85317	1	0.00108	0.0576	0.27012	0.743	0.92397	1	1	1	0.11619	0.593	0.36927	0.826	0.1514	0.647	0.67544	0.958	0.33514	0.801	0.98144	1
16q gain	41 (25%)	124	0.051439	0.457	0.59407	0.929	3e-05	0.00576	0.23303	0.71	1	1	0.66973	0.957	0.01005	0.193	0.10673	0.572	0.01974	0.267	0.24473	0.717	0.23279	0.71	0.91638	1
17p gain	8 (5%)	157	0.10822	0.577	0.3801	0.826	0.23289	0.71	0.46604	0.892	1	1	0.87224	1	0.4234	0.866	0.68545	0.966	0.4899	0.899	0.44299	0.881	NA	NA	NA	NA
17q gain	32 (19%)	133	0.19858	0.71	0.9434	1	0.0070299	0.169	0.42106	0.866	0.87929	1	0.93974	1	0.36648	0.826	0.49278	0.899	0.053689	0.464	0.46011	0.889	0.12005	0.597	0.6368	0.951
18p gain	8 (5%)	157	0.51648	0.899	0.39081	0.837	0.21637	0.71	0.72849	0.987	0.80727	1	0.73807	0.989	0.67849	0.959	0.38325	0.827	0.50015	0.899	0.55809	0.912	1	1	0.89302	1
18q gain	6 (4%)	159	NA	NA	NA	NA	0.79243	1	0.37925	0.826	0.49173	0.899	0.89336	1	0.53351	0.907	0.22696	0.71	0.65428	0.951	0.63186	0.949	1	1	0.89241	1
19p gain	33 (20%)	132	0.065239	0.494	0.41718	0.866	0.1056	0.572	0.76558	1	0.54443	0.912	0.46273	0.89	0.56613	0.912	0.0277	0.315	0.13756	0.618	0.95661	1	1	1	0.97296	1
19q gain	32 (19%)	133	0.082009	0.533	0.53346	0.907	0.074799	0.513	0.52985	0.907	0.95812	1	0.5937	0.929	0.22574	0.71	0.12842	0.613	0.35346	0.826	0.58086	0.923	1	1	0.9727	1
20p gain	109 (66%)	56	0.095439	0.556	0.7255	0.987	0.13832	0.618	0.25071	0.717	0.13423	0.618	0.83064	1	0.6043	0.934	0.56572	0.912	0.097259	0.556	0.04681	0.439	0.30403	0.766	0.077669	0.514
20q gain	145 (88%)	20	0.0073999	0.169	0.16114	0.661	0.00071999	0.0432	0.23268	0.71	0.16221	0.662	0.33769	0.802	0.44343	0.881	0.00247	0.0828	0.04467	0.438	0.36072	0.826	0.36213	0.826	1	1
21q gain	10 (6%)	155	0.53468	0.907	0.65878	0.951	0.63746	0.951	1	1	0.62022	0.941	0.79221	1	0.9469	1	0.9205	1	0.28902	0.75	0.7239	0.987	NA	NA	NA	NA
22q gain	9 (5%)	156	0.72923	0.987	0.060789	0.488	0.075399	0.513	1	1	0.42196	0.866	0.23416	0.71	0.3507	0.823	0.20105	0.71	1	1	1	1	NA	NA	NA	NA
xp gain	34 (21%)	131	0.01094	0.206	0.14298	0.621	0.11071	0.581	0.40021	0.853	0.5928	0.929	0.62051	0.941	0.27095	0.743	0.66889	0.957	0.81035	1	0.84631	1	0.83054	1	0.64299	0.951
xq gain	34 (21%)	131	0.1558	0.647	0.3822	0.826	0.04541	0.439	0.28785	0.749	0.81791	1	0.30235	0.766	0.10387	0.567	0.64712	0.951	0.98096	1	1	1	0.45331	0.885	0.21174	0.71
1p loss	46 (28%)	119	0.69028	0.967	0.02726	0.315	0.050779	0.457	0.18471	0.693	0.9351	1	0.20652	0.71	0.36589	0.826	0.16901	0.67	0.44225	0.881	0.60981	0.937	0.55863	0.912	0.56728	0.912
1q loss	26 (16%)	139	0.91178	1	0.057609	0.481	0.25687	0.721	0.02878	0.321	0.84292	1	0.53214	0.907	0.065439	0.494	0.4628	0.89	0.56052	0.912	0.22605	0.71	0.49983	0.899	0.27539	0.745
2p loss	11 (7%)	154	0.63838	0.951	0.74994	0.989	0.00384	0.108	0.48317	0.899	0.90723	1	0.54182	0.912	0.52631	0.905	0.059349	0.487	0.43527	0.876	0.60523	0.934	NA	NA	NA	NA
2q loss	6 (4%)	159	1	1	0.56886	0.912	0.052339	0.461	NA	NA	0.10257	0.567	0.30363	0.766	0.81026	1	0.065559	0.494	0.20276	0.71	0.46637	0.892	NA	NA	NA	NA
3p loss	15 (9%)	150	1	1	0.36478	0.826	0.2033	0.71	0.77358	1	0.25835	0.721	0.89481	1	0.1538	0.647	0.5571	0.912	0.45346	0.885	0.13369	0.618	0.098299	0.556	0.04447	0.438
3q loss	10 (6%)	155	0.51802	0.899	0.79274	1	0.19505	0.71	0.4095	0.863	0.32597	0.791	0.65674	0.951	0.10374	0.567	0.22013	0.71	0.49354	0.899	0.0094199	0.185	0.42196	0.866	0.36483	0.826
4p loss	59 (36%)	106	0.66598	0.957	0.37489	0.826	0.00196	0.0828	0.02733	0.315	0.97115	1	0.51399	0.899	0.7127	0.984	0.56919	0.912	0.97448	1	0.099789	0.557	0.22443	0.71	0.21053	0.71
4q loss	66 (40%)	99	0.77922	1	0.2696	0.743	0.00106	0.0576	0.04007	0.409	0.82037	1	0.51586	0.899	0.76827	1	0.43509	0.876	0.81237	1	0.21724	0.71	0.56689	0.912	0.91642	1
5p loss	26 (16%)	139	0.23854	0.713	0.81585	1	0.1371	0.618	0.17772	0.68	0.52463	0.904	0.065159	0.494	0.87787	1	0.12522	0.607	0.7238	0.987	0.57731	0.921	0.1736	0.672	0.24565	0.717
5q loss	40 (24%)	125	0.091929	0.553	0.01167	0.215	0.21639	0.71	0.1682	0.67	1	1	0.54844	0.912	0.92608	1	0.22103	0.71	0.91175	1	0.20721	0.71	0.11335	0.582	0.22744	0.71
6p loss	13 (8%)	152	0.54577	0.912	0.93061	1	0.7001	0.975	0.12122	0.597	0.3109	0.771	0.35936	0.826	0.74926	0.989	0.27757	0.745	0.56563	0.912	0.25552	0.721	NA	NA	NA	NA
6q loss	22 (13%)	143	0.16958	0.67	0.64415	0.951	0.15508	0.647	0.42157	0.866	0.45188	0.885	0.60366	0.934	0.15288	0.647	0.15233	0.647	0.26433	0.733	0.40941	0.863	0.01323	0.235	0.55323	0.912
7q loss	3 (2%)	162	NA	NA	NA	NA	0.35744	0.826	NA	NA	0.7848	1	0.77282	1	0.03748	0.391	0.75868	0.996	0.85834	1	1	1	NA	NA	NA	NA
8p loss	73 (44%)	92	0.12303	0.6	0.24634	0.717	0.13412	0.618	0.96409	1	0.78513	1	0.25229	0.719	0.02402	0.303	0.11701	0.593	0.89445	1	0.97305	1	0.73313	0.989	0.22946	0.71
8q loss	11 (7%)	154	0.68736	0.966	0.71372	0.984	0.40971	0.863	0.46774	0.892	0.79383	1	0.27927	0.745	0.54539	0.912	0.32646	0.791	0.86583	1	0.30241	0.766	0.16901	0.67	0.40503	0.858
9p loss	23 (14%)	142	0.63364	0.95	0.61621	0.941	0.32085	0.782	0.14116	0.62	0.74896	0.989	0.56438	0.912	0.81104	1	0.5148	0.899	0.30836	0.769	0.04812	0.444	0.71268	0.984	0.03911	0.404
9q loss	23 (14%)	142	0.20979	0.71	0.44682	0.885	0.28143	0.745	0.13771	0.618	0.94124	1	0.90533	1	0.51567	0.899	0.19545	0.71	0.071299	0.5	0.00166	0.0795	0.4599	0.889	0.01511	0.253
10p loss	33 (20%)	132	0.14404	0.621	0.17194	0.672	0.13742	0.618	0.067169	0.494	0.14386	0.621	0.24043	0.715	0.20062	0.71	0.45508	0.886	0.83701	1	0.11748	0.593	0.81646	1	0.74866	0.989
10q loss	38 (23%)	127	0.17733	0.68	0.1553	0.647	0.059349	0.487	0.093379	0.553	0.12995	0.615	0.03237	0.348	0.37412	0.826	0.073439	0.51	0.68211	0.963	0.088439	0.551	0.89918	1	0.53747	0.908
11p loss	23 (14%)	142	0.24424	0.717	0.37067	0.826	0.0060299	0.159	0.20502	0.71	0.2237	0.71	0.1742	0.672	0.01935	0.267	0.23403	0.71	0.97659	1	0.74083	0.989	0.60159	0.934	0.29073	0.75
11q loss	30 (18%)	135	0.055379	0.47	0.20493	0.71	0.0069799	0.169	0.02603	0.315	0.60614	0.934	0.38492	0.829	0.0083899	0.174	0.0083799	0.174	0.20261	0.71	0.37727	0.826	0.41457	0.866	0.66754	0.957
12p loss	22 (13%)	143	0.42416	0.866	0.27833	0.745	0.65403	0.951	0.40057	0.853	0.69333	0.969	0.077509	0.514	0.7518	0.99	0.43277	0.875	0.44977	0.885	0.77514	1	0.066179	0.494	0.51198	0.899
12q loss	19 (12%)	146	0.50202	0.899	0.77098	1	0.23663	0.71	0.93011	1	0.55549	0.912	0.25849	0.721	0.83373	1	0.25439	0.72	0.37852	0.826	0.31718	0.777	0.27443	0.745	0.86771	1
13q loss	8 (5%)	157	0.51804	0.899	1	1	0.65656	0.951	0.1066	0.572	0.054359	0.466	0.431	0.873	1	1	0.49153	0.899	0.17439	0.672	1	1	NA	NA	NA	NA
14q loss	67 (41%)	98	0.50138	0.899	0.25035	0.717	0.01996	0.267	0.5671	0.912	0.80204	1	0.49279	0.899	0.38213	0.826	0.077689	0.514	0.33549	0.801	0.20213	0.71	0.74829	0.989	0.78124	1
15q loss	73 (44%)	92	0.45081	0.885	0.11068	0.581	0.00048	0.035	1	1	0.086479	0.551	0.24905	0.717	0.43923	0.88	0.47744	0.899	0.8172	1	0.63106	0.949	0.90551	1	0.74598	0.989
16p loss	9 (5%)	156	0.37764	0.826	0.7563	0.995	0.099599	0.557	0.062399	0.494	0.65368	0.951	0.63159	0.949	0.18416	0.693	0.91288	1	0.56296	0.912	1	1	0.25046	0.717	0.4857	0.899
16q loss	15 (9%)	150	0.28186	0.745	0.67769	0.959	0.04713	0.439	0.33399	0.801	0.7227	0.987	0.89816	1	0.40237	0.855	0.99574	1	0.86879	1	1	1	0.93934	1	0.96386	1
17p loss	107 (65%)	58	0.20552	0.71	0.37623	0.826	0.094599	0.556	0.19917	0.71	0.97078	1	0.31928	0.78	0.61728	0.941	0.59329	0.929	0.98086	1	0.39824	0.851	0.28765	0.749	0.66448	0.957
17q loss	26 (16%)	139	0.90417	1	0.73692	0.989	0.02779	0.315	0.089409	0.552	0.74641	0.989	0.97385	1	0.1127	0.582	0.33964	0.803	0.86988	1	0.94698	1	0.42311	0.866	0.4758	0.897
18p loss	128 (78%)	37	0.060089	0.488	0.70741	0.984	0.00133	0.0672	0.0263	0.315	0.60097	0.934	0.15188	0.647	0.11805	0.593	0.01463	0.251	0.16816	0.67	0.16329	0.662	0.61859	0.941	0.59418	0.929
18q loss	138 (84%)	27	0.02006	0.267	0.17442	0.672	5.9999e-05	0.0072	0.01204	0.218	0.79602	1	0.48384	0.899	0.071179	0.5	0.01984	0.267	0.42652	0.867	0.02792	0.315	0.51625	0.899	0.53822	0.908
19p loss	21 (13%)	144	0.72908	0.987	0.83416	1	0.13458	0.618	0.03038	0.335	0.64956	0.951	0.80796	1	0.59067	0.929	0.56557	0.912	0.37715	0.826	0.01833	0.267	0.96362	1	0.74039	0.989
19q loss	20 (12%)	145	0.82879	1	0.5031	0.899	0.070119	0.5	0.082109	0.533	0.82039	1	0.77508	1	0.5534	0.912	0.71551	0.985	0.067519	0.494	0.0084499	0.174	1	1	0.74934	0.989
20p loss	23 (14%)	142	1	1	0.9521	1	0.050749	0.457	0.28414	0.749	0.37839	0.826	0.98519	1	0.43891	0.88	0.67376	0.958	0.0326	0.348	0.02272	0.291	0.30399	0.766	0.01452	0.251
21q loss	68 (41%)	97	0.28541	0.749	0.24686	0.717	0.41336	0.866	1	1	0.97279	1	0.53101	0.907	0.81981	1	0.68738	0.966	0.01574	0.256	0.18269	0.69	0.22429	0.71	0.067959	0.494
22q loss	58 (35%)	107	0.85322	1	0.31162	0.771	0.064159	0.494	0.77558	1	0.74983	0.989	0.29651	0.763	0.34007	0.803	0.16882	0.67	0.0061399	0.159	0.18134	0.688	0.12599	0.607	0.0186	0.267
xp loss	25 (15%)	140	0.28969	0.75	0.89898	1	0.30477	0.766	0.47513	0.897	0.50439	0.899	0.84006	1	0.42579	0.867	0.85791	1	0.97749	1	0.57874	0.921	0.57079	0.913	0.77989	1
xq loss	24 (15%)	141	0.60933	0.937	0.47828	0.899	0.70874	0.984	0.31486	0.776	0.6945	0.969	0.90142	1	0.56347	0.912	0.95447	1	0.8405	1	0.3656	0.826	0.47398	0.897	0.80585	1
