		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.3	48 (29%)	117	1	1	0.8519	0.968	0.00276	0.0477	0.92568	1	0.52729	0.821	0.22841	0.588	0.421	0.741	0.3989	0.72	0.056229	0.309	0.15127	0.501	0.9304	1	0.39225	0.713
amp_1q32.2	48 (29%)	117	0.82887	0.954	0.93896	1	0.03778	0.243	0.51877	0.816	0.18767	0.553	0.02697	0.204	0.61907	0.874	0.82082	0.954	0.080819	0.376	0.65056	0.887	0.29629	0.649	0.11635	0.447
amp_5q22.3	20 (12%)	145	0.02115	0.174	0.17568	0.538	0.0081399	0.093	0.22242	0.579	0.10599	0.432	0.65859	0.888	0.67525	0.899	0.25235	0.61	0.45229	0.768	0.66089	0.888	1	1	0.2849	0.638
amp_6p21.1	54 (33%)	111	0.058549	0.314	0.10642	0.432	0.00053999	0.0177	0.057159	0.309	0.809	0.948	0.04518	0.281	0.65956	0.888	0.14305	0.491	0.19121	0.553	0.38825	0.713	0.36675	0.703	0.78091	0.934
amp_8p11.23	53 (32%)	112	0.00316	0.0508	0.20572	0.563	9.9999e-06	0.000787	0.26395	0.62	0.37633	0.708	0.13086	0.47	0.13504	0.476	0.072929	0.351	0.04751	0.283	0.02707	0.204	0.97916	1	0.11936	0.454
amp_8p11.21	70 (42%)	95	0.01237	0.125	0.21137	0.569	9.9999e-06	0.000787	0.23304	0.591	0.36932	0.703	0.52174	0.819	0.62752	0.875	0.1246	0.464	0.18361	0.553	0.27415	0.626	0.22485	0.583	0.32073	0.684
amp_8q24.21	109 (66%)	56	0.01661	0.153	0.24271	0.595	9.9999e-06	0.000787	0.12903	0.468	0.63062	0.875	0.88705	0.987	0.22036	0.578	0.0468	0.283	0.53868	0.823	0.26105	0.618	0.075199	0.36	0.44679	0.764
amp_10q22.2	11 (7%)	154	0.50255	0.803	0.92987	1	0.53552	0.822	1	1	1	1	0.97141	1	0.25936	0.616	0.089589	0.4	0.38055	0.711	0.18682	0.553	NA	NA	NA	NA
amp_11p15.5	45 (27%)	120	0.3808	0.711	0.094499	0.414	0.080779	0.376	0.6201	0.874	0.72528	0.919	0.58789	0.857	0.28872	0.643	0.00357	0.0562	0.097349	0.416	0.53668	0.822	0.45011	0.768	0.089829	0.4
amp_11q13.3	28 (17%)	137	0.32574	0.686	0.32989	0.689	0.03599	0.234	0.0046	0.0651	0.91032	1	0.7298	0.919	0.00263	0.0477	0.01179	0.121	0.01332	0.132	0.34151	0.701	0.078439	0.371	0.13473	0.476
amp_12p13.33	41 (25%)	124	0.68816	0.908	0.48206	0.796	0.03468	0.234	0.72118	0.918	0.11425	0.444	0.21533	0.575	0.80406	0.947	0.48791	0.796	0.5763	0.853	0.81556	0.951	0.43627	0.755	0.22816	0.588
amp_12p12.1	40 (24%)	125	0.69598	0.908	0.46875	0.788	0.03094	0.222	0.36714	0.703	0.04986	0.287	0.0085999	0.0966	0.18837	0.553	0.36595	0.703	0.69256	0.908	0.76094	0.93	0.43353	0.755	0.14642	0.496
amp_13q12.13	126 (76%)	39	0.41742	0.738	0.17319	0.536	9.9999e-06	0.000787	0.17163	0.535	0.32479	0.686	0.43718	0.755	0.00091999	0.0225	9.9999e-06	0.000787	0.00294	0.0496	0.00416	0.0627	0.93894	1	0.78066	0.934
amp_13q12.2	125 (76%)	40	0.36532	0.703	0.23446	0.591	9.9999e-06	0.000787	0.11688	0.447	0.59141	0.858	0.58651	0.857	0.00059999	0.0185	9.9999e-05	0.00506	0.02162	0.176	0.02182	0.176	0.82751	0.954	0.63509	0.875
amp_13q22.1	120 (73%)	45	0.26658	0.62	0.065809	0.335	9.9999e-06	0.000787	0.03515	0.234	0.90688	0.999	0.26804	0.62	0.00017	0.00708	3e-05	0.00193	0.00448	0.0647	0.0106	0.112	1	1	0.39961	0.72
amp_15q26.1	13 (8%)	152	0.10991	0.436	0.2097	0.569	1	1	0.41764	0.738	0.1555	0.505	0.34643	0.701	0.55992	0.84	0.1608	0.512	0.90634	0.999	1	1	0.74287	0.927	0.64258	0.882
amp_16p11.2	47 (28%)	118	0.12273	0.462	0.57801	0.853	0.00054999	0.0177	0.12844	0.468	0.33962	0.701	0.66628	0.892	0.03959	0.25	0.16059	0.512	0.096939	0.416	0.85167	0.968	0.64485	0.883	0.98745	1
amp_17q12	46 (28%)	119	0.0065899	0.0884	0.12707	0.468	0.00162	0.0348	0.37303	0.704	0.1755	0.538	0.91731	1	0.34596	0.701	0.069539	0.342	0.14646	0.496	0.59865	0.861	0.12052	0.456	0.63789	0.877
amp_17q24.1	39 (24%)	126	0.29082	0.643	0.70776	0.908	0.00090999	0.0225	0.14892	0.497	0.61172	0.872	0.7479	0.927	0.23171	0.591	0.10056	0.42	0.61031	0.872	0.20621	0.563	0.49534	0.799	0.93964	1
amp_19p13.2	36 (22%)	129	0.01956	0.171	0.25164	0.61	0.00124	0.0293	0.53106	0.821	0.54468	0.825	0.085319	0.39	0.03133	0.222	0.03609	0.234	0.58774	0.857	0.70001	0.908	0.86873	0.972	0.86862	0.972
amp_20q11.21	146 (88%)	19	0.0078999	0.0917	0.16166	0.512	0.00073999	0.0202	0.02027	0.171	0.19414	0.554	0.37035	0.703	0.097629	0.416	0.00029	0.0108	0.0073199	0.0894	0.39702	0.719	0.49916	0.803	0.59132	0.858
amp_20q11.23	147 (89%)	18	0.0076599	0.0917	0.16031	0.512	0.00141	0.0322	0.04764	0.283	0.19417	0.554	0.36884	0.703	0.16188	0.512	0.00015	0.00664	0.01364	0.132	0.27845	0.628	0.36227	0.703	1	1
amp_20q13.31	148 (90%)	17	0.00473	0.0657	0.10699	0.432	0.00245	0.0469	0.04703	0.283	0.19475	0.554	0.36983	0.703	0.17345	0.536	5.9999e-05	0.00354	0.02212	0.176	0.3884	0.713	0.36002	0.703	1	1
amp_xp22.2	32 (19%)	133	0.051389	0.293	0.22095	0.578	0.59797	0.861	0.27309	0.626	0.95913	1	0.23467	0.591	0.54899	0.829	0.62924	0.875	0.813	0.951	0.8689	0.972	0.18428	0.553	0.9483	1
del_1p36.11	75 (45%)	90	0.11404	0.444	0.064079	0.332	0.19652	0.554	0.14343	0.491	0.70599	0.908	0.92073	1	0.20687	0.563	0.01365	0.132	0.49342	0.799	0.064679	0.332	0.35264	0.703	0.79612	0.943
del_1p33	53 (32%)	112	0.36211	0.703	0.00428	0.0631	0.0173	0.157	0.13782	0.481	0.8003	0.944	0.31046	0.67	0.31021	0.67	0.18751	0.553	0.44483	0.764	0.26764	0.62	0.5609	0.84	0.56935	0.848
del_1p13.2	54 (33%)	111	0.47582	0.794	0.02364	0.186	0.0027	0.0477	0.57791	0.853	0.54377	0.825	0.57332	0.851	0.4765	0.794	0.01915	0.169	0.50326	0.803	0.2113	0.569	0.64785	0.885	0.61218	0.872
del_2p12	13 (8%)	152	0.39173	0.713	0.83701	0.959	9.9999e-06	0.000787	1	1	0.34285	0.701	0.14846	0.497	0.82581	0.954	0.13962	0.485	0.15186	0.501	0.14357	0.491	NA	NA	NA	NA
del_3p14.2	31 (19%)	134	0.79944	0.944	0.69707	0.908	0.77768	0.934	1	1	0.22024	0.578	0.7174	0.915	0.50412	0.803	0.86094	0.972	0.80878	0.948	0.96115	1	0.2591	0.616	0.25015	0.61
del_3q26.31	18 (11%)	147	1	1	0.86855	0.972	0.1527	0.501	0.47761	0.794	0.44593	0.764	0.23992	0.592	0.31382	0.675	0.41569	0.738	0.26548	0.62	0.056819	0.309	0.78533	0.934	0.36759	0.703
del_4p13	60 (36%)	105	0.78036	0.934	0.0386	0.246	0.00068999	0.0202	0.068669	0.34	0.83813	0.959	0.50585	0.803	0.67209	0.898	0.34663	0.701	0.97885	1	0.22001	0.578	0.16516	0.517	0.50217	0.803
del_4q22.1	73 (44%)	92	0.61727	0.874	0.02396	0.186	0.00041	0.0145	0.2321	0.591	0.70322	0.908	0.47759	0.794	0.39294	0.713	0.31789	0.68	0.98645	1	0.25525	0.614	0.6134	0.872	0.70386	0.908
del_4q35.1	72 (44%)	93	0.61003	0.872	0.064279	0.332	0.00181	0.0366	0.10746	0.432	0.38656	0.713	0.65472	0.888	0.54548	0.825	0.04959	0.287	0.48676	0.796	0.04932	0.287	0.5513	0.83	0.85152	0.968
del_5q12.1	53 (32%)	112	0.066459	0.336	0.00187	0.0368	0.20664	0.563	0.00391	0.0602	0.78214	0.934	0.27804	0.628	0.68635	0.908	0.094839	0.414	0.53563	0.822	0.28982	0.643	0.02661	0.204	0.23693	0.591
del_5q22.2	59 (36%)	106	0.18475	0.553	0.00088999	0.0225	0.17633	0.538	0.18765	0.553	0.54436	0.825	0.72822	0.919	0.622	0.874	0.18944	0.553	0.73834	0.925	0.23832	0.591	0.02059	0.172	0.19807	0.554
del_6p25.3	24 (15%)	141	1	1	0.9384	1	0.80745	0.948	0.02013	0.171	0.65421	0.888	0.98466	1	0.92425	1	0.69624	0.908	0.7522	0.929	0.78603	0.934	0.57039	0.848	0.75847	0.93
del_6q26	30 (18%)	135	0.15685	0.507	0.7462	0.927	0.01419	0.136	0.6349	0.875	0.099079	0.42	0.20024	0.556	0.39245	0.713	0.32222	0.684	0.055329	0.308	0.33366	0.693	0.078519	0.371	0.94992	1
del_7q31.1	4 (2%)	161	NA	NA	NA	NA	0.10616	0.432	NA	NA	1	1	0.95171	1	0.16387	0.516	0.77003	0.934	1	1	1	1	NA	NA	NA	NA
del_8p23.2	100 (61%)	65	0.1108	0.436	0.090029	0.4	0.00015	0.00664	0.45662	0.772	1	1	0.26869	0.62	0.0070699	0.0894	0.0099199	0.108	0.78028	0.934	0.32648	0.686	0.55822	0.839	0.50493	0.803
del_8p11.21	45 (27%)	120	0.74464	0.927	0.47	0.789	0.0096599	0.107	0.23588	0.591	0.070089	0.342	0.36781	0.703	0.01058	0.112	0.04855	0.286	0.059679	0.318	0.0078299	0.0917	0.34057	0.701	0.7393	0.925
del_10q21.1	41 (25%)	124	0.28019	0.63	0.71156	0.909	0.25696	0.615	0.49143	0.799	0.01863	0.167	0.068079	0.339	0.31037	0.67	0.53922	0.823	0.85972	0.972	0.19083	0.553	0.96464	1	0.39026	0.713
del_10q25.2	48 (29%)	117	0.75885	0.93	0.77115	0.934	0.73629	0.925	0.48567	0.796	0.45325	0.768	0.24306	0.595	0.13797	0.481	0.03192	0.224	0.62078	0.874	0.27617	0.627	0.44446	0.764	0.30048	0.655
del_11q22.3	38 (23%)	127	0.03361	0.231	0.03005	0.219	0.00269	0.0477	0.03568	0.234	0.69029	0.908	0.13403	0.476	0.0067399	0.0884	0.0073199	0.0894	0.45194	0.768	0.96646	1	0.41455	0.738	0.6641	0.891
del_12p13.1	33 (20%)	132	1	1	0.26307	0.62	0.59952	0.861	0.19904	0.555	0.53537	0.822	0.27525	0.627	0.61728	0.874	0.12836	0.468	0.29417	0.647	0.52574	0.821	0.81663	0.951	0.83179	0.954
del_12q22	26 (16%)	139	0.35393	0.703	0.4786	0.794	0.03426	0.233	0.77428	0.934	0.82187	0.954	0.5132	0.813	0.65746	0.888	0.75627	0.93	0.51452	0.813	0.70704	0.908	0.49528	0.799	0.38729	0.713
del_14q11.2	70 (42%)	95	0.48107	0.796	0.13086	0.47	0.00021	0.00826	0.93186	1	0.70549	0.908	0.6915	0.908	0.43591	0.755	0.10021	0.42	0.108	0.432	0.34396	0.701	0.74873	0.927	0.78256	0.934
del_14q31.1	72 (44%)	93	0.48561	0.796	0.23864	0.591	0.053919	0.303	0.96574	1	0.70731	0.908	0.19809	0.554	0.23276	0.591	0.096399	0.416	0.1975	0.554	0.23607	0.591	0.38929	0.713	0.65642	0.888
del_15q21.1	79 (48%)	86	0.57018	0.848	0.11079	0.436	0.00071999	0.0202	0.78849	0.935	0.03279	0.228	0.32291	0.684	0.67862	0.9	0.41468	0.738	0.81357	0.951	0.43512	0.755	0.42401	0.745	0.58413	0.857
del_15q22.33	77 (47%)	88	0.62434	0.875	0.15433	0.504	6.9999e-05	0.00381	0.59754	0.861	0.14762	0.497	0.056709	0.309	0.37279	0.704	0.10133	0.42	0.41823	0.738	0.74376	0.927	0.85785	0.972	0.52608	0.821
del_16p13.3	13 (8%)	152	0.88834	0.987	0.67797	0.9	0.20377	0.563	0.02032	0.171	0.72523	0.919	0.59849	0.861	0.19077	0.553	0.96215	1	0.35644	0.703	0.63361	0.875	0.25077	0.61	0.488	0.796
del_16q23.1	23 (14%)	142	0.15289	0.501	0.35059	0.703	0.00305	0.0502	0.12636	0.468	0.58828	0.857	0.95209	1	0.36262	0.703	0.7384	0.925	0.75866	0.93	0.84096	0.96	0.89021	0.988	0.86683	0.972
del_17p11.2	113 (68%)	52	0.083839	0.388	0.75736	0.93	0.071489	0.347	0.28976	0.643	0.83136	0.954	0.36019	0.703	0.62672	0.875	0.22111	0.578	0.93494	1	0.35066	0.703	0.63554	0.875	0.70353	0.908
del_18q21.2	145 (88%)	20	0.13278	0.475	0.33356	0.693	2e-05	0.00142	0.04642	0.283	1	1	0.76831	0.934	0.03127	0.222	0.02836	0.211	0.40181	0.722	0.12447	0.464	0.89945	0.995	0.86759	0.972
del_18q22.1	141 (85%)	24	0.067169	0.337	0.089799	0.4	9.9999e-06	0.000787	0.0291	0.215	0.77932	0.934	0.6543	0.888	0.090349	0.4	0.01159	0.121	0.82808	0.954	0.29929	0.654	0.7862	0.934	1	1
del_19p13.3	37 (22%)	128	0.19752	0.554	0.88511	0.987	0.67424	0.899	0.04117	0.258	0.96194	1	0.8287	0.954	0.77314	0.934	0.93171	1	0.35648	0.703	0.00176	0.0366	0.53043	0.821	0.32858	0.688
del_20p12.1	49 (30%)	116	0.94166	1	0.33615	0.696	0.01558	0.145	0.49389	0.799	0.26459	0.62	0.38259	0.713	0.52794	0.821	0.3768	0.708	0.357	0.703	0.25599	0.614	0.43618	0.755	0.43654	0.755
del_21q11.2	73 (44%)	92	0.3159	0.678	0.060199	0.318	0.085249	0.39	0.87225	0.974	0.92238	1	0.21343	0.572	0.51728	0.816	0.70989	0.909	0.064149	0.332	0.7286	0.919	0.21879	0.578	0.19043	0.553
del_22q13.31	68 (41%)	97	0.90704	0.999	0.29374	0.647	0.0068899	0.0887	0.86935	0.972	0.40399	0.724	0.35383	0.703	0.45854	0.773	0.27294	0.626	0.0066199	0.0884	0.11557	0.447	0.10099	0.42	0.01457	0.138
del_xp22.33	34 (21%)	131	0.77824	0.934	0.91724	1	0.052809	0.299	0.00155	0.0343	0.72462	0.919	0.89785	0.995	0.97192	1	0.53027	0.821	0.69443	0.908	1	1	0.62665	0.875	0.5871	0.857
