[1] "ofn"        "-oTREAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/READ-TP/15107799/READ-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/READ-TP/15096454/transformed.cor.cli.txt"

nPatients in clinical file=169, in cluster file=165, common to both=165
[1]  59 165
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           117 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           117 
[1] "AMP PEAK  2(1Q32.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           117 
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           117 
[1] "AMP PEAK  3(5Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           20                           145 
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           20                           145 
[1] "AMP PEAK  4(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           54                           111 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           54                           111 
[1] "AMP PEAK  5(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                            53                            112 
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                            53                            112 
[1] "AMP PEAK  6(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                            70                             95 
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                            70                             95 
[1] "AMP PEAK  7(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                           109                             56 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                           109                             56 
[1] "AMP PEAK  8(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            154 
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            154 
[1] "AMP PEAK  9(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            45                            120 
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            45                            120 
[1] "AMP PEAK 10(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                            28                            137 
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                            28                            137 
[1] "AMP PEAK 11(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             124 
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             124 
[1] "AMP PEAK 12(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            125 
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            125 
[1] "AMP PEAK 13(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            126                              39 
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            126                              39 
[1] "AMP PEAK 14(13Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           125                             40 
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           125                             40 
[1] "AMP PEAK 15(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                           120                             45 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                           120                             45 
[1] "AMP PEAK 16(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            13                            152 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            13                            152 
[1] "AMP PEAK 17(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                            47                            118 
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                            47                            118 
[1] "AMP PEAK 18(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          46                          119 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          46                          119 
[1] "AMP PEAK 19(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                            39                            126 
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                            39                            126 
[1] "AMP PEAK 20(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            36                            129 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            36                            129 
[1] "AMP PEAK 21(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            146                              19 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            146                              19 
[1] "AMP PEAK 22(20Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                            147                              18 
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                            147                              18 
[1] "AMP PEAK 23(20Q13.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE 
                            148                              17 
  AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE 
                            148                              17 
[1] "AMP PEAK 24(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           32                           133 
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           32                           133 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            75                             90 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            75                             90 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         53                         112 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         53                         112 
[1] "DEL PEAK  3(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           54                           111 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           54                           111 
[1] "DEL PEAK  4(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         13                         152 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         13                         152 
[1] "DEL PEAK  5(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           31                           134 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           31                           134 
[1] "DEL PEAK  6(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            18                            147 
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            18                            147 
[1] "DEL PEAK  7(4P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         60                         105 
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         60                         105 
[1] "DEL PEAK  8(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           73                            92 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           73                            92 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            93 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            93 
[1] "DEL PEAK 10(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                           53                           112 
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                           53                           112 
[1] "DEL PEAK 11(5Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           59                           106 
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           59                           106 
[1] "DEL PEAK 12(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           141 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           141 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         135 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         135 
[1] "DEL PEAK 14(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           161 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           161 
[1] "DEL PEAK 15(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            65 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            65 
[1] "DEL PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            45                            120 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            45                            120 
[1] "DEL PEAK 17(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            41                            124 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            41                            124 
[1] "DEL PEAK 18(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            48                            117 
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            48                            117 
[1] "DEL PEAK 19(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            38                            127 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            38                            127 
[1] "DEL PEAK 20(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            132 
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            132 
[1] "DEL PEAK 21(12Q22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                          26                          139 
  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                          26                          139 
[1] "DEL PEAK 22(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                            70                             95 
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                            70                             95 
[1] "DEL PEAK 23(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                            72                             93 
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                            72                             93 
[1] "DEL PEAK 24(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE 
                            79                             86 
  DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE 
                            79                             86 
[1] "DEL PEAK 25(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE 
                             77                              88 
  DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE 
                             77                              88 
[1] "DEL PEAK 26(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE 
                            13                            152 
  DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE 
                            13                            152 
[1] "DEL PEAK 27(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                            23                            142 
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                            23                            142 
[1] "DEL PEAK 28(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE 
                           113                             52 
  DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE 
                           113                             52 
[1] "DEL PEAK 29(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE 
                           145                             20 
  DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE 
                           145                             20 
[1] "DEL PEAK 30(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE 
                           141                             24 
  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE 
                           141                             24 
[1] "DEL PEAK 31(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE 
                            37                            128 
  DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE 
                            37                            128 
[1] "DEL PEAK 32(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                            49                            116 
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                            49                            116 
[1] "DEL PEAK 33(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                            73                             92 
  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                            73                             92 
[1] "DEL PEAK 34(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             68                              97 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             68                              97 
[1] "DEL PEAK 35(XP22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                            34                            131 
  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                            34                            131 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 165 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 165 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        6      5      6
  AMP PEAK  1(1Q21.3) WILD-TYPE     19     17     16
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           6                            19
  CLUS_2                           5                            17
  CLUS_3                           6                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED        1      3      3      3      3      1
  AMP PEAK  1(1Q21.3) WILD-TYPE      5     10     10      6      5      8
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  1(1Q21.3) MUTATED        3      0
  AMP PEAK  1(1Q21.3) WILD-TYPE      5      3
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                            10
  CLUS_3                           3                            10
  CLUS_4                           3                             6
  CLUS_5                           3                             5
  CLUS_6                           1                             8
  CLUS_7                           3                             5
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.3) MUTATED       14     18      6     10
  AMP PEAK  1(1Q21.3) WILD-TYPE     52     14     25     26
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          14                            52
  CLUS_2                          18                            14
  CLUS_3                           6                            25
  CLUS_4                          10                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        9     14      9
  AMP PEAK  1(1Q21.3) WILD-TYPE     19     25     20
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           9                            19
  CLUS_2                          14                            25
  CLUS_3                           9                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        8     11     19
  AMP PEAK  1(1Q21.3) WILD-TYPE     25     29     34
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           8                            25
  CLUS_2                          11                            29
  CLUS_3                          19                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED        3      6     10      2     12      5
  AMP PEAK  1(1Q21.3) WILD-TYPE     22     17     19      4     17      9
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                           6                            17
  CLUS_3                          10                            19
  CLUS_4                           2                             4
  CLUS_5                          12                            17
  CLUS_6                           5                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED        9      7     10      6     16
  AMP PEAK  1(1Q21.3) WILD-TYPE     20      7     23     22     44
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                           7                             7
  CLUS_3                          10                            23
  CLUS_4                           6                            22
  CLUS_5                          16                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED       10     12      4      3     12      4
  AMP PEAK  1(1Q21.3) WILD-TYPE     17     24      8     16     20     14
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.3) MUTATED        3
  AMP PEAK  1(1Q21.3) WILD-TYPE     17
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          10                            17
  CLUS_2                          12                            24
  CLUS_3                           4                             8
  CLUS_4                           3                            16
  CLUS_5                          12                            20
  CLUS_6                           4                            14
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED        7     15      1      4     14
  AMP PEAK  1(1Q21.3) WILD-TYPE     11     27     16      4     42
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                          15                            27
  CLUS_3                           1                            16
  CLUS_4                           4                             4
  CLUS_5                          14                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED       10     18     13
  AMP PEAK  1(1Q21.3) WILD-TYPE     12     45     43
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          18                            45
  CLUS_3                          13                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.3) MUTATED        2      5      5      4
  AMP PEAK  1(1Q21.3) WILD-TYPE      7      9      9      9
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           5                             9
  CLUS_3                           5                             9
  CLUS_4                           4                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED        3      3      8      0      2
  AMP PEAK  1(1Q21.3) WILD-TYPE      6     10     10      5      3
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                            10
  CLUS_3                           8                            10
  CLUS_4                           0                             5
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.2) MUTATED        5      6      6
  AMP PEAK  2(1Q32.2) WILD-TYPE     20     16     16
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           5                            20
  CLUS_2                           6                            16
  CLUS_3                           6                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.2) MUTATED        1      3      3      3      3      1
  AMP PEAK  2(1Q32.2) WILD-TYPE      5     10     10      6      5      8
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  2(1Q32.2) MUTATED        2      1
  AMP PEAK  2(1Q32.2) WILD-TYPE      6      2
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                            10
  CLUS_3                           3                            10
  CLUS_4                           3                             6
  CLUS_5                           3                             5
  CLUS_6                           1                             8
  CLUS_7                           2                             6
  CLUS_8                           1                             2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.2) MUTATED       16     16      6     10
  AMP PEAK  2(1Q32.2) WILD-TYPE     50     16     25     26
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                          16                            50
  CLUS_2                          16                            16
  CLUS_3                           6                            25
  CLUS_4                          10                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.2) MUTATED        7     15     10
  AMP PEAK  2(1Q32.2) WILD-TYPE     21     24     19
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           7                            21
  CLUS_2                          15                            24
  CLUS_3                          10                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.2) MUTATED        7     11     21
  AMP PEAK  2(1Q32.2) WILD-TYPE     26     29     32
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           7                            26
  CLUS_2                          11                            29
  CLUS_3                          21                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.2) MUTATED        2      5     13      2     12      5
  AMP PEAK  2(1Q32.2) WILD-TYPE     23     18     16      4     17      9
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           2                            23
  CLUS_2                           5                            18
  CLUS_3                          13                            16
  CLUS_4                           2                             4
  CLUS_5                          12                            17
  CLUS_6                           5                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.2) MUTATED        9      6     11      6     16
  AMP PEAK  2(1Q32.2) WILD-TYPE     20      8     22     22     44
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                           6                             8
  CLUS_3                          11                            22
  CLUS_4                           6                            22
  CLUS_5                          16                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.2) MUTATED        9     13      4      4     10      4
  AMP PEAK  2(1Q32.2) WILD-TYPE     18     23      8     15     22     14
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q32.2) MUTATED        4
  AMP PEAK  2(1Q32.2) WILD-TYPE     16
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           9                            18
  CLUS_2                          13                            23
  CLUS_3                           4                             8
  CLUS_4                           4                            15
  CLUS_5                          10                            22
  CLUS_6                           4                            14
  CLUS_7                           4                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.2) MUTATED        6     16      1      3     13
  AMP PEAK  2(1Q32.2) WILD-TYPE     12     26     16      5     43
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                          16                            26
  CLUS_3                           1                            16
  CLUS_4                           3                             5
  CLUS_5                          13                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.2) MUTATED        7     19     13
  AMP PEAK  2(1Q32.2) WILD-TYPE     15     44     43
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           7                            15
  CLUS_2                          19                            44
  CLUS_3                          13                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.2) MUTATED        1      5      7      4
  AMP PEAK  2(1Q32.2) WILD-TYPE      8      9      7      9
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           5                             9
  CLUS_3                           7                             7
  CLUS_4                           4                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.2) MUTATED        2      3     10      0      2
  AMP PEAK  2(1Q32.2) WILD-TYPE      7     10      8      5      3
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           3                            10
  CLUS_3                          10                             8
  CLUS_4                           0                             5
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(5Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED        3      0      6
  AMP PEAK  3(5Q22.3) WILD-TYPE     22     22     16
D3V1, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                           0                            22
  CLUS_3                           6                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5Q22.3) MUTATED        0      1      3      0      3      0
  AMP PEAK  3(5Q22.3) WILD-TYPE      6     12     10      9      5      9
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  3(5Q22.3) MUTATED        2      0
  AMP PEAK  3(5Q22.3) WILD-TYPE      6      3
D3V2, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           1                            12
  CLUS_3                           3                            10
  CLUS_4                           0                             9
  CLUS_5                           3                             5
  CLUS_6                           0                             9
  CLUS_7                           2                             6
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED        2      7      4      7
  AMP PEAK  3(5Q22.3) WILD-TYPE     64     25     27     29
D3V3, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           2                            64
  CLUS_2                           7                            25
  CLUS_3                           4                            27
  CLUS_4                           7                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED        2      3      6
  AMP PEAK  3(5Q22.3) WILD-TYPE     26     36     23
D3V4, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           2                            26
  CLUS_2                           3                            36
  CLUS_3                           6                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED        5      8      3
  AMP PEAK  3(5Q22.3) WILD-TYPE     28     32     50
D3V5, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                           8                            32
  CLUS_3                           3                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5Q22.3) MUTATED        4      3      2      0      6      1
  AMP PEAK  3(5Q22.3) WILD-TYPE     21     20     27      6     23     13
D3V6, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           4                            21
  CLUS_2                           3                            20
  CLUS_3                           2                            27
  CLUS_4                           0                             6
  CLUS_5                           6                            23
  CLUS_6                           1                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5Q22.3) MUTATED        4      1      2      5      8
  AMP PEAK  3(5Q22.3) WILD-TYPE     25     13     31     23     52
D3V7, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           1                            13
  CLUS_3                           2                            31
  CLUS_4                           5                            23
  CLUS_5                           8                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5Q22.3) MUTATED        4      3      3      1      5      0
  AMP PEAK  3(5Q22.3) WILD-TYPE     23     33      9     18     27     18
                               vv
clus                            CLUS_7
  AMP PEAK  3(5Q22.3) MUTATED        4
  AMP PEAK  3(5Q22.3) WILD-TYPE     16
D3V8, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           4                            23
  CLUS_2                           3                            33
  CLUS_3                           3                             9
  CLUS_4                           1                            18
  CLUS_5                           5                            27
  CLUS_6                           0                            18
  CLUS_7                           4                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5Q22.3) MUTATED        2      6      1      2      4
  AMP PEAK  3(5Q22.3) WILD-TYPE     16     36     16      6     52
D3V9, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                           6                            36
  CLUS_3                           1                            16
  CLUS_4                           2                             6
  CLUS_5                           4                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED        1      8      6
  AMP PEAK  3(5Q22.3) WILD-TYPE     21     55     50
D3V10, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           1                            21
  CLUS_2                           8                            55
  CLUS_3                           6                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED        1      2      3      2
  AMP PEAK  3(5Q22.3) WILD-TYPE      8     12     11     11
D3V11, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                            12
  CLUS_3                           3                            11
  CLUS_4                           2                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5Q22.3) MUTATED        0      2      4      0      2
  AMP PEAK  3(5Q22.3) WILD-TYPE      9     11     14      5      3
D3V12, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           2                            11
  CLUS_3                           4                            14
  CLUS_4                           0                             5
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED        3      8      9
  AMP PEAK  4(6P21.1) WILD-TYPE     22     14     13
D4V1, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                           8                            14
  CLUS_3                           9                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(6P21.1) MUTATED        0      2      3      4      4      2
  AMP PEAK  4(6P21.1) WILD-TYPE      6     11     10      5      4      7
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  4(6P21.1) MUTATED        5      0
  AMP PEAK  4(6P21.1) WILD-TYPE      3      3
D4V2, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           2                            11
  CLUS_3                           3                            10
  CLUS_4                           4                             5
  CLUS_5                           4                             4
  CLUS_6                           2                             7
  CLUS_7                           5                             3
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       12     19     12     11
  AMP PEAK  4(6P21.1) WILD-TYPE     54     13     19     25
D4V3, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          12                            54
  CLUS_2                          19                            13
  CLUS_3                          12                            19
  CLUS_4                          11                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       15     10      9
  AMP PEAK  4(6P21.1) WILD-TYPE     13     29     20
D4V4, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          15                            13
  CLUS_2                          10                            29
  CLUS_3                           9                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       10     12     19
  AMP PEAK  4(6P21.1) WILD-TYPE     23     28     34
D4V5, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          10                            23
  CLUS_2                          12                            28
  CLUS_3                          19                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(6P21.1) MUTATED       12      2      9      1     11      6
  AMP PEAK  4(6P21.1) WILD-TYPE     13     21     20      5     18      8
D4V6, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          12                            13
  CLUS_2                           2                            21
  CLUS_3                           9                            20
  CLUS_4                           1                             5
  CLUS_5                          11                            18
  CLUS_6                           6                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(6P21.1) MUTATED       13      5     10      8     18
  AMP PEAK  4(6P21.1) WILD-TYPE     16      9     23     20     42
D4V7, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          13                            16
  CLUS_2                           5                             9
  CLUS_3                          10                            23
  CLUS_4                           8                            20
  CLUS_5                          18                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(6P21.1) MUTATED       11     15      4      5     11      1
  AMP PEAK  4(6P21.1) WILD-TYPE     16     21      8     14     21     17
                               vv
clus                            CLUS_7
  AMP PEAK  4(6P21.1) MUTATED        7
  AMP PEAK  4(6P21.1) WILD-TYPE     13
D4V8, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          11                            16
  CLUS_2                          15                            21
  CLUS_3                           4                             8
  CLUS_4                           5                            14
  CLUS_5                          11                            21
  CLUS_6                           1                            17
  CLUS_7                           7                            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(6P21.1) MUTATED        8     20      4      4     16
  AMP PEAK  4(6P21.1) WILD-TYPE     10     22     13      4     40
D4V9, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           8                            10
  CLUS_2                          20                            22
  CLUS_3                           4                            13
  CLUS_4                           4                             4
  CLUS_5                          16                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       10     25     17
  AMP PEAK  4(6P21.1) WILD-TYPE     12     38     39
D4V10, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          25                            38
  CLUS_3                          17                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED        4      9      6      4
  AMP PEAK  4(6P21.1) WILD-TYPE      5      5      8      9
D4V11, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           9                             5
  CLUS_3                           6                             8
  CLUS_4                           4                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(6P21.1) MUTATED        6      5      8      2      2
  AMP PEAK  4(6P21.1) WILD-TYPE      3      8     10      3      3
D4V12, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                           5                             8
  CLUS_3                           8                            10
  CLUS_4                           2                             3
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.23) MUTATED        2      4     11
  AMP PEAK  5(8P11.23) WILD-TYPE     23     18     11
D5V1, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            4                             18
  CLUS_3                           11                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.23) MUTATED        1      3      1      3      5      1
  AMP PEAK  5(8P11.23) WILD-TYPE      5     10     12      6      3      8
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  5(8P11.23) MUTATED        2      1
  AMP PEAK  5(8P11.23) WILD-TYPE      6      2
D5V2, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            3                             10
  CLUS_3                            1                             12
  CLUS_4                            3                              6
  CLUS_5                            5                              3
  CLUS_6                            1                              8
  CLUS_7                            2                              6
  CLUS_8                            1                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.23) MUTATED        6      9     10     28
  AMP PEAK  5(8P11.23) WILD-TYPE     60     23     21      8
D5V3, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            6                             60
  CLUS_2                            9                             23
  CLUS_3                           10                             21
  CLUS_4                           28                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.23) MUTATED       14     12     10
  AMP PEAK  5(8P11.23) WILD-TYPE     14     27     19
D5V4, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           14                             14
  CLUS_2                           12                             27
  CLUS_3                           10                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.23) MUTATED       11     17     15
  AMP PEAK  5(8P11.23) WILD-TYPE     22     23     38
D5V5, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           11                             22
  CLUS_2                           17                             23
  CLUS_3                           15                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.23) MUTATED        9      6      5      3     13      7
  AMP PEAK  5(8P11.23) WILD-TYPE     16     17     24      3     16      7
D5V6, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            9                             16
  CLUS_2                            6                             17
  CLUS_3                            5                             24
  CLUS_4                            3                              3
  CLUS_5                           13                             16
  CLUS_6                            7                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.23) MUTATED       13      3      9     13     15
  AMP PEAK  5(8P11.23) WILD-TYPE     16     11     24     15     45
D5V7, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           13                             16
  CLUS_2                            3                             11
  CLUS_3                            9                             24
  CLUS_4                           13                             15
  CLUS_5                           15                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.23) MUTATED       13     10      6      8      7      2
  AMP PEAK  5(8P11.23) WILD-TYPE     14     26      6     11     25     16
                                vv
clus                             CLUS_7
  AMP PEAK  5(8P11.23) MUTATED        7
  AMP PEAK  5(8P11.23) WILD-TYPE     13
D5V8, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           13                             14
  CLUS_2                           10                             26
  CLUS_3                            6                              6
  CLUS_4                            8                             11
  CLUS_5                            7                             25
  CLUS_6                            2                             16
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.23) MUTATED        7     20      6      2     11
  AMP PEAK  5(8P11.23) WILD-TYPE     11     22     11      6     45
D5V9, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                           20                             22
  CLUS_3                            6                             11
  CLUS_4                            2                              6
  CLUS_5                           11                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.23) MUTATED        9     26     11
  AMP PEAK  5(8P11.23) WILD-TYPE     13     37     45
D5V10, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                           26                             37
  CLUS_3                           11                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.23) MUTATED        4      6      7      7
  AMP PEAK  5(8P11.23) WILD-TYPE      5      8      7      6
D5V11, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            6                              8
  CLUS_3                            7                              7
  CLUS_4                            7                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.23) MUTATED        4      4      8      3      5
  AMP PEAK  5(8P11.23) WILD-TYPE      5      9     10      2      0
D5V12, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            4                              9
  CLUS_3                            8                             10
  CLUS_4                            3                              2
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.21) MUTATED        6      6     14
  AMP PEAK  6(8P11.21) WILD-TYPE     19     16      8
D6V1, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                            6                             16
  CLUS_3                           14                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8P11.21) MUTATED        1      4      4      6      4      1
  AMP PEAK  6(8P11.21) WILD-TYPE      5      9      9      3      4      8
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  6(8P11.21) MUTATED        4      2
  AMP PEAK  6(8P11.21) WILD-TYPE      4      1
D6V2, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                              9
  CLUS_3                            4                              9
  CLUS_4                            6                              3
  CLUS_5                            4                              4
  CLUS_6                            1                              8
  CLUS_7                            4                              4
  CLUS_8                            2                              1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.21) MUTATED       12     13     13     32
  AMP PEAK  6(8P11.21) WILD-TYPE     54     19     18      4
D6V3, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                           13                             19
  CLUS_3                           13                             18
  CLUS_4                           32                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.21) MUTATED       17     16     12
  AMP PEAK  6(8P11.21) WILD-TYPE     11     23     17
D6V4, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           17                             11
  CLUS_2                           16                             23
  CLUS_3                           12                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.21) MUTATED       12     21     25
  AMP PEAK  6(8P11.21) WILD-TYPE     21     19     28
D6V5, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           12                             21
  CLUS_2                           21                             19
  CLUS_3                           25                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8P11.21) MUTATED        8      9     14      3     16      8
  AMP PEAK  6(8P11.21) WILD-TYPE     17     14     15      3     13      6
D6V6, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                            8                             17
  CLUS_2                            9                             14
  CLUS_3                           14                             15
  CLUS_4                            3                              3
  CLUS_5                           16                             13
  CLUS_6                            8                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8P11.21) MUTATED       13      6     11     15     25
  AMP PEAK  6(8P11.21) WILD-TYPE     16      8     22     13     35
D6V7, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           13                             16
  CLUS_2                            6                              8
  CLUS_3                           11                             22
  CLUS_4                           15                             13
  CLUS_5                           25                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8P11.21) MUTATED       17     14      5      8     14      3
  AMP PEAK  6(8P11.21) WILD-TYPE     10     22      7     11     18     15
                                vv
clus                             CLUS_7
  AMP PEAK  6(8P11.21) MUTATED        9
  AMP PEAK  6(8P11.21) WILD-TYPE     11
D6V8, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           17                             10
  CLUS_2                           14                             22
  CLUS_3                            5                              7
  CLUS_4                            8                             11
  CLUS_5                           14                             18
  CLUS_6                            3                             15
  CLUS_7                            9                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8P11.21) MUTATED        6     24      7      2     20
  AMP PEAK  6(8P11.21) WILD-TYPE     12     18     10      6     36
D6V9, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                           24                             18
  CLUS_3                            7                             10
  CLUS_4                            2                              6
  CLUS_5                           20                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.21) MUTATED       11     29     19
  AMP PEAK  6(8P11.21) WILD-TYPE     11     34     37
D6V10, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           11                             11
  CLUS_2                           29                             34
  CLUS_3                           19                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.21) MUTATED        4      6     11      7
  AMP PEAK  6(8P11.21) WILD-TYPE      5      8      3      6
D6V11, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            6                              8
  CLUS_3                           11                              3
  CLUS_4                            7                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8P11.21) MUTATED        4      7      9      3      5
  AMP PEAK  6(8P11.21) WILD-TYPE      5      6      9      2      0
D6V12, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            7                              6
  CLUS_3                            9                              9
  CLUS_4                            3                              2
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.21) MUTATED       12     13     19
  AMP PEAK  7(8Q24.21) WILD-TYPE     13      9      3
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           12                             13
  CLUS_2                           13                              9
  CLUS_3                           19                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.21) MUTATED        3      8      7      9      6      4
  AMP PEAK  7(8Q24.21) WILD-TYPE      3      5      6      0      2      5
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  7(8Q24.21) MUTATED        5      2
  AMP PEAK  7(8Q24.21) WILD-TYPE      3      1
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            8                              5
  CLUS_3                            7                              6
  CLUS_4                            9                              0
  CLUS_5                            6                              2
  CLUS_6                            4                              5
  CLUS_7                            5                              3
  CLUS_8                            2                              1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q24.21) MUTATED       35     14     25     35
  AMP PEAK  7(8Q24.21) WILD-TYPE     31     18      6      1
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           35                             31
  CLUS_2                           14                             18
  CLUS_3                           25                              6
  CLUS_4                           35                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.21) MUTATED       23     23     19
  AMP PEAK  7(8Q24.21) WILD-TYPE      5     16     10
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           23                              5
  CLUS_2                           23                             16
  CLUS_3                           19                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.21) MUTATED       22     30     35
  AMP PEAK  7(8Q24.21) WILD-TYPE     11     10     18
D7V5, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           22                             11
  CLUS_2                           30                             10
  CLUS_3                           35                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.21) MUTATED       18     14     19      4     22     10
  AMP PEAK  7(8Q24.21) WILD-TYPE      7      9     10      2      7      4
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           18                              7
  CLUS_2                           14                              9
  CLUS_3                           19                             10
  CLUS_4                            4                              2
  CLUS_5                           22                              7
  CLUS_6                           10                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8Q24.21) MUTATED       20      7     18     22     41
  AMP PEAK  7(8Q24.21) WILD-TYPE      9      7     15      6     19
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           20                              9
  CLUS_2                            7                              7
  CLUS_3                           18                             15
  CLUS_4                           22                              6
  CLUS_5                           41                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.21) MUTATED       22     18      9     15     23      8
  AMP PEAK  7(8Q24.21) WILD-TYPE      5     18      3      4      9     10
                                vv
clus                             CLUS_7
  AMP PEAK  7(8Q24.21) MUTATED       13
  AMP PEAK  7(8Q24.21) WILD-TYPE      7
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           22                              5
  CLUS_2                           18                             18
  CLUS_3                            9                              3
  CLUS_4                           15                              4
  CLUS_5                           23                              9
  CLUS_6                            8                             10
  CLUS_7                           13                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8Q24.21) MUTATED       10     32     11      5     36
  AMP PEAK  7(8Q24.21) WILD-TYPE      8     10      6      3     20
D7V9, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           10                              8
  CLUS_2                           32                             10
  CLUS_3                           11                              6
  CLUS_4                            5                              3
  CLUS_5                           36                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.21) MUTATED       18     41     35
  AMP PEAK  7(8Q24.21) WILD-TYPE      4     22     21
D7V10, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                           18                              4
  CLUS_2                           41                             22
  CLUS_3                           35                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q24.21) MUTATED        7      9     14      9
  AMP PEAK  7(8Q24.21) WILD-TYPE      2      5      0      4
D7V11, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                            9                              5
  CLUS_3                           14                              0
  CLUS_4                            9                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8Q24.21) MUTATED        8      8     14      4      5
  AMP PEAK  7(8Q24.21) WILD-TYPE      1      5      4      1      0
D7V12, multiclass
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                            8                              5
  CLUS_3                           14                              4
  CLUS_4                            4                              1
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10Q22.2) MUTATED        1      3      2
  AMP PEAK  8(10Q22.2) WILD-TYPE     24     19     20
D8V1, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            1                             24
  CLUS_2                            3                             19
  CLUS_3                            2                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10Q22.2) MUTATED        1      2      1      1      0      1
  AMP PEAK  8(10Q22.2) WILD-TYPE      5     11     12      8      8      8
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  8(10Q22.2) MUTATED        0      0
  AMP PEAK  8(10Q22.2) WILD-TYPE      8      3
D8V2, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                             11
  CLUS_3                            1                             12
  CLUS_4                            1                              8
  CLUS_5                            0                              8
  CLUS_6                            1                              8
  CLUS_7                            0                              8
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(10Q22.2) MUTATED        7      1      1      2
  AMP PEAK  8(10Q22.2) WILD-TYPE     59     31     30     34
D8V3, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            7                             59
  CLUS_2                            1                             31
  CLUS_3                            1                             30
  CLUS_4                            2                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10Q22.2) MUTATED        1      2      2
  AMP PEAK  8(10Q22.2) WILD-TYPE     27     37     27
D8V4, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            1                             27
  CLUS_2                            2                             37
  CLUS_3                            2                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10Q22.2) MUTATED        2      3      4
  AMP PEAK  8(10Q22.2) WILD-TYPE     31     37     49
D8V5, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            3                             37
  CLUS_3                            4                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10Q22.2) MUTATED        1      2      3      0      2      1
  AMP PEAK  8(10Q22.2) WILD-TYPE     24     21     26      6     27     13
D8V6, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            1                             24
  CLUS_2                            2                             21
  CLUS_3                            3                             26
  CLUS_4                            0                              6
  CLUS_5                            2                             27
  CLUS_6                            1                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(10Q22.2) MUTATED        1      0      2      0      7
  AMP PEAK  8(10Q22.2) WILD-TYPE     28     14     31     28     53
D8V7, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                            0                             14
  CLUS_3                            2                             31
  CLUS_4                            0                             28
  CLUS_5                            7                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10Q22.2) MUTATED        0      2      1      0      4      3
  AMP PEAK  8(10Q22.2) WILD-TYPE     27     34     11     19     28     15
                                vv
clus                             CLUS_7
  AMP PEAK  8(10Q22.2) MUTATED        0
  AMP PEAK  8(10Q22.2) WILD-TYPE     20
D8V8, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            0                             27
  CLUS_2                            2                             34
  CLUS_3                            1                             11
  CLUS_4                            0                             19
  CLUS_5                            4                             28
  CLUS_6                            3                             15
  CLUS_7                            0                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(10Q22.2) MUTATED        0      3      0      1      6
  AMP PEAK  8(10Q22.2) WILD-TYPE     18     39     17      7     50
D8V9, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            0                             18
  CLUS_2                            3                             39
  CLUS_3                            0                             17
  CLUS_4                            1                              7
  CLUS_5                            6                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10Q22.2) MUTATED        2      2      6
  AMP PEAK  8(10Q22.2) WILD-TYPE     20     61     50
D8V10, multiclass
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            2                             61
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(10Q22.2) MUTATED        0      0      2      0
  AMP PEAK  8(10Q22.2) WILD-TYPE      9     14     12     13
D8V11, multiclass
[1] "Remove cluster labels:"       "AMP PEAK  8(10Q22.2) MUTATED"
clus
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                             2                             48 
                    TCGA-AF-2687                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-4110                     TCGA-AF-6655 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6672                     TCGA-AG-3725 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3732 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4021                     TCGA-AG-4022 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-CI-6620 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6621                     TCGA-CI-6624 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4749 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6681 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DG 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EI-6506 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6509 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6513 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-F5-6464 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(10Q22.2) MUTATED        1      0      1      0      0
  AMP PEAK  8(10Q22.2) WILD-TYPE      8     13     17      5      5
D8V12, multiclass
[1] "Remove cluster labels:"       "AMP PEAK  8(10Q22.2) MUTATED"
clus
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                             2                             48 
                    TCGA-AF-2687                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-4110                     TCGA-AF-6655 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6672                     TCGA-AG-3725 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3732 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4021                     TCGA-AG-4022 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-CI-6620 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6621                     TCGA-CI-6624 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4749 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6681 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DG 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EI-6506 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6509 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6513 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-F5-6464 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 

Clustering(9) Variable = AMP PEAK  9(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11P15.5) MUTATED        9      4      5
  AMP PEAK  9(11P15.5) WILD-TYPE     16     18     17
D9V1, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            9                             16
  CLUS_2                            4                             18
  CLUS_3                            5                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(11P15.5) MUTATED        5      3      3      2      1      1
  AMP PEAK  9(11P15.5) WILD-TYPE      1     10     10      7      7      8
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  9(11P15.5) MUTATED        3      0
  AMP PEAK  9(11P15.5) WILD-TYPE      5      3
D9V2, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            3                             10
  CLUS_3                            3                             10
  CLUS_4                            2                              7
  CLUS_5                            1                              7
  CLUS_6                            1                              8
  CLUS_7                            3                              5
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11P15.5) MUTATED       18      6     14      7
  AMP PEAK  9(11P15.5) WILD-TYPE     48     26     17     29
D9V3, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                           18                             48
  CLUS_2                            6                             26
  CLUS_3                           14                             17
  CLUS_4                            7                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11P15.5) MUTATED        9     11      6
  AMP PEAK  9(11P15.5) WILD-TYPE     19     28     23
D9V4, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            9                             19
  CLUS_2                           11                             28
  CLUS_3                            6                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11P15.5) MUTATED        8     11     17
  AMP PEAK  9(11P15.5) WILD-TYPE     25     29     36
D9V5, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           11                             29
  CLUS_3                           17                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(11P15.5) MUTATED        9      4      8      1      8      6
  AMP PEAK  9(11P15.5) WILD-TYPE     16     19     21      5     21      8
D9V6, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            9                             16
  CLUS_2                            4                             19
  CLUS_3                            8                             21
  CLUS_4                            1                              5
  CLUS_5                            8                             21
  CLUS_6                            6                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11P15.5) MUTATED        6      2      8     12     16
  AMP PEAK  9(11P15.5) WILD-TYPE     23     12     25     16     44
D9V7, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            2                             12
  CLUS_3                            8                             25
  CLUS_4                           12                             16
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(11P15.5) MUTATED        7      8      2     10     14      2
  AMP PEAK  9(11P15.5) WILD-TYPE     20     28     10      9     18     16
                                vv
clus                             CLUS_7
  AMP PEAK  9(11P15.5) MUTATED        1
  AMP PEAK  9(11P15.5) WILD-TYPE     19
D9V8, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                            8                             28
  CLUS_3                            2                             10
  CLUS_4                           10                              9
  CLUS_5                           14                             18
  CLUS_6                            2                             16
  CLUS_7                            1                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11P15.5) MUTATED        3     14      6      5     12
  AMP PEAK  9(11P15.5) WILD-TYPE     15     28     11      3     44
D9V9, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                           14                             28
  CLUS_3                            6                             11
  CLUS_4                            5                              3
  CLUS_5                           12                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11P15.5) MUTATED        5     21     14
  AMP PEAK  9(11P15.5) WILD-TYPE     17     42     42
D9V10, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                           21                             42
  CLUS_3                           14                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11P15.5) MUTATED        4      2      4      3
  AMP PEAK  9(11P15.5) WILD-TYPE      5     12     10     10
D9V11, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            2                             12
  CLUS_3                            4                             10
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11P15.5) MUTATED        1      1      7      3      1
  AMP PEAK  9(11P15.5) WILD-TYPE      8     12     11      2      4
D9V12, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                             12
  CLUS_3                            7                             11
  CLUS_4                            3                              2
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED        1      3      4
  AMP PEAK 10(11Q13.3) WILD-TYPE     24     19     18
D10V1, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            1                             24
  CLUS_2                            3                             19
  CLUS_3                            4                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(11Q13.3) MUTATED        0      1      1      2      1      0
  AMP PEAK 10(11Q13.3) WILD-TYPE      6     12     12      7      7      9
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 10(11Q13.3) MUTATED        3      0
  AMP PEAK 10(11Q13.3) WILD-TYPE      5      3
D10V2, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            1                             12
  CLUS_3                            1                             12
  CLUS_4                            2                              7
  CLUS_5                            1                              7
  CLUS_6                            0                              9
  CLUS_7                            3                              5
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11Q13.3) MUTATED        8      5     11      4
  AMP PEAK 10(11Q13.3) WILD-TYPE     58     27     20     32
D10V3, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            8                             58
  CLUS_2                            5                             27
  CLUS_3                           11                             20
  CLUS_4                            4                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED       12      4      4
  AMP PEAK 10(11Q13.3) WILD-TYPE     16     35     25
D10V4, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                           12                             16
  CLUS_2                            4                             35
  CLUS_3                            4                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED        6      7      8
  AMP PEAK 10(11Q13.3) WILD-TYPE     27     33     45
D10V5, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            7                             33
  CLUS_3                            8                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(11Q13.3) MUTATED        4      3      4      0      6      4
  AMP PEAK 10(11Q13.3) WILD-TYPE     21     20     25      6     23     10
D10V6, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            4                             21
  CLUS_2                            3                             20
  CLUS_3                            4                             25
  CLUS_4                            0                              6
  CLUS_5                            6                             23
  CLUS_6                            4                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(11Q13.3) MUTATED        9      2      0      8      9
  AMP PEAK 10(11Q13.3) WILD-TYPE     20     12     33     20     51
D10V7, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            2                             12
  CLUS_3                            0                             33
  CLUS_4                            8                             20
  CLUS_5                            9                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(11Q13.3) MUTATED        8      2      2      7      7      1
  AMP PEAK 10(11Q13.3) WILD-TYPE     19     34     10     12     25     17
                                vv
clus                             CLUS_7
  AMP PEAK 10(11Q13.3) MUTATED        1
  AMP PEAK 10(11Q13.3) WILD-TYPE     19
D10V8, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                            2                             34
  CLUS_3                            2                             10
  CLUS_4                            7                             12
  CLUS_5                            7                             25
  CLUS_6                            1                             17
  CLUS_7                            1                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(11Q13.3) MUTATED        5      8      2      4      4
  AMP PEAK 10(11Q13.3) WILD-TYPE     13     34     15      4     52
D10V9, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            8                             34
  CLUS_3                            2                             15
  CLUS_4                            4                              4
  CLUS_5                            4                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.3) MUTATED        5     12      6
  AMP PEAK 10(11Q13.3) WILD-TYPE     17     51     50
D10V10, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                           12                             51
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11Q13.3) MUTATED        5      3      2      1
  AMP PEAK 10(11Q13.3) WILD-TYPE      4     11     12     12
D10V11, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                             11
  CLUS_3                            2                             12
  CLUS_4                            1                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(11Q13.3) MUTATED        2      2      2      3      2
  AMP PEAK 10(11Q13.3) WILD-TYPE      7     11     16      2      3
D10V12, multiclass
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            2                             11
  CLUS_3                            2                             16
  CLUS_4                            3                              2
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED        5      7      5
  AMP PEAK 11(12P13.33) WILD-TYPE     20     15     17
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             5                              20
  CLUS_2                             7                              15
  CLUS_3                             5                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P13.33) MUTATED        2      6      2      2      1      1
  AMP PEAK 11(12P13.33) WILD-TYPE      4      7     11      7      7      8
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 11(12P13.33) MUTATED        3      0
  AMP PEAK 11(12P13.33) WILD-TYPE      5      3
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             6                               7
  CLUS_3                             2                              11
  CLUS_4                             2                               7
  CLUS_5                             1                               7
  CLUS_6                             1                               8
  CLUS_7                             3                               5
  CLUS_8                             0                               3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED       14     12      3     12
  AMP PEAK 11(12P13.33) WILD-TYPE     52     20     28     24
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            14                              52
  CLUS_2                            12                              20
  CLUS_3                             3                              28
  CLUS_4                            12                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED        8      8      7
  AMP PEAK 11(12P13.33) WILD-TYPE     20     31     22
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             8                              20
  CLUS_2                             8                              31
  CLUS_3                             7                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       12      6     13
  AMP PEAK 11(12P13.33) WILD-TYPE     21     34     40
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            12                              21
  CLUS_2                             6                              34
  CLUS_3                            13                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P13.33) MUTATED        8      5     11      0      4      3
  AMP PEAK 11(12P13.33) WILD-TYPE     17     18     18      6     25     11
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             8                              17
  CLUS_2                             5                              18
  CLUS_3                            11                              18
  CLUS_4                             0                               6
  CLUS_5                             4                              25
  CLUS_6                             3                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P13.33) MUTATED        6      3     11      7     14
  AMP PEAK 11(12P13.33) WILD-TYPE     23     11     22     21     46
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             6                              23
  CLUS_2                             3                              11
  CLUS_3                            11                              22
  CLUS_4                             7                              21
  CLUS_5                            14                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P13.33) MUTATED        7     10      3      3      9      7
  AMP PEAK 11(12P13.33) WILD-TYPE     20     26      9     16     23     11
                                 vv
clus                              CLUS_7
  AMP PEAK 11(12P13.33) MUTATED        2
  AMP PEAK 11(12P13.33) WILD-TYPE     18
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             7                              20
  CLUS_2                            10                              26
  CLUS_3                             3                               9
  CLUS_4                             3                              16
  CLUS_5                             9                              23
  CLUS_6                             7                              11
  CLUS_7                             2                              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P13.33) MUTATED        5     13      2      3     15
  AMP PEAK 11(12P13.33) WILD-TYPE     13     29     15      5     41
D11V9, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             5                              13
  CLUS_2                            13                              29
  CLUS_3                             2                              15
  CLUS_4                             3                               5
  CLUS_5                            15                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED        7     17     14
  AMP PEAK 11(12P13.33) WILD-TYPE     15     46     42
D11V10, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             7                              15
  CLUS_2                            17                              46
  CLUS_3                            14                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED        1      4      6      3
  AMP PEAK 11(12P13.33) WILD-TYPE      8     10      8     10
D11V11, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             4                              10
  CLUS_3                             6                               8
  CLUS_4                             3                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P13.33) MUTATED        3      6      5      0      0
  AMP PEAK 11(12P13.33) WILD-TYPE      6      7     13      5      5
D11V12, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             3                               6
  CLUS_2                             6                               7
  CLUS_3                             5                              13
  CLUS_4                             0                               5
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P12.1) MUTATED        5      7      6
  AMP PEAK 12(12P12.1) WILD-TYPE     20     15     16
D12V1, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            5                             20
  CLUS_2                            7                             15
  CLUS_3                            6                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P12.1) MUTATED        2      6      2      3      1      1
  AMP PEAK 12(12P12.1) WILD-TYPE      4      7     11      6      7      8
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 12(12P12.1) MUTATED        3      0
  AMP PEAK 12(12P12.1) WILD-TYPE      5      3
D12V2, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            6                              7
  CLUS_3                            2                             11
  CLUS_4                            3                              6
  CLUS_5                            1                              7
  CLUS_6                            1                              8
  CLUS_7                            3                              5
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P12.1) MUTATED       16     11      2     11
  AMP PEAK 12(12P12.1) WILD-TYPE     50     21     29     25
D12V3, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                           16                             50
  CLUS_2                           11                             21
  CLUS_3                            2                             29
  CLUS_4                           11                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P12.1) MUTATED        5      7      9
  AMP PEAK 12(12P12.1) WILD-TYPE     23     32     20
D12V4, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            5                             23
  CLUS_2                            7                             32
  CLUS_3                            9                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P12.1) MUTATED       12      5     11
  AMP PEAK 12(12P12.1) WILD-TYPE     21     35     42
D12V5, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                           12                             21
  CLUS_2                            5                             35
  CLUS_3                           11                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P12.1) MUTATED        9      5     11      0      3      0
  AMP PEAK 12(12P12.1) WILD-TYPE     16     18     18      6     26     14
D12V6, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            9                             16
  CLUS_2                            5                             18
  CLUS_3                           11                             18
  CLUS_4                            0                              6
  CLUS_5                            3                             26
  CLUS_6                            0                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(12P12.1) MUTATED        4      3     13      5     15
  AMP PEAK 12(12P12.1) WILD-TYPE     25     11     20     23     45
D12V7, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            4                             25
  CLUS_2                            3                             11
  CLUS_3                           13                             20
  CLUS_4                            5                             23
  CLUS_5                           15                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P12.1) MUTATED        5     10      3      3     10      7
  AMP PEAK 12(12P12.1) WILD-TYPE     22     26      9     16     22     11
                                vv
clus                             CLUS_7
  AMP PEAK 12(12P12.1) MUTATED        2
  AMP PEAK 12(12P12.1) WILD-TYPE     18
D12V8, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           10                             26
  CLUS_3                            3                              9
  CLUS_4                            3                             16
  CLUS_5                           10                             22
  CLUS_6                            7                             11
  CLUS_7                            2                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(12P12.1) MUTATED        3     12      3      3     16
  AMP PEAK 12(12P12.1) WILD-TYPE     15     30     14      5     40
D12V9, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                           12                             30
  CLUS_3                            3                             14
  CLUS_4                            3                              5
  CLUS_5                           16                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P12.1) MUTATED        7     15     15
  AMP PEAK 12(12P12.1) WILD-TYPE     15     48     41
D12V10, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                           15                             48
  CLUS_3                           15                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P12.1) MUTATED        2      3      6      2
  AMP PEAK 12(12P12.1) WILD-TYPE      7     11      8     11
D12V11, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                             11
  CLUS_3                            6                              8
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(12P12.1) MUTATED        5      3      5      0      0
  AMP PEAK 12(12P12.1) WILD-TYPE      4     10     13      5      5
D12V12, multiclass
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                             10
  CLUS_3                            5                             13
  CLUS_4                            0                              5
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED       18     13     17
  AMP PEAK 13(13Q12.13) WILD-TYPE      7      9      5
D13V1, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            18                               7
  CLUS_2                            13                               9
  CLUS_3                            17                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.13) MUTATED        3      7      9      8      5      5
  AMP PEAK 13(13Q12.13) WILD-TYPE      3      6      4      1      3      4
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 13(13Q12.13) MUTATED        8      3
  AMP PEAK 13(13Q12.13) WILD-TYPE      0      0
D13V2, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             7                               6
  CLUS_3                             9                               4
  CLUS_4                             8                               1
  CLUS_5                             5                               3
  CLUS_6                             5                               4
  CLUS_7                             8                               0
  CLUS_8                             3                               0
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.13) MUTATED       38     32     29     27
  AMP PEAK 13(13Q12.13) WILD-TYPE     28      0      2      9
D13V3, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            38                              28
  CLUS_2                            32                               0
  CLUS_3                            29                               2
  CLUS_4                            27                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED       26     30     22
  AMP PEAK 13(13Q12.13) WILD-TYPE      2      9      7
D13V4, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            26                               2
  CLUS_2                            30                               9
  CLUS_3                            22                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED       24     27     43
  AMP PEAK 13(13Q12.13) WILD-TYPE      9     13     10
D13V5, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            24                               9
  CLUS_2                            27                              13
  CLUS_3                            43                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.13) MUTATED       19     15     23      4     20     13
  AMP PEAK 13(13Q12.13) WILD-TYPE      6      8      6      2      9      1
D13V6, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            19                               6
  CLUS_2                            15                               8
  CLUS_3                            23                               6
  CLUS_4                             4                               2
  CLUS_5                            20                               9
  CLUS_6                            13                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.13) MUTATED       23     12     20     28     42
  AMP PEAK 13(13Q12.13) WILD-TYPE      6      2     13      0     18
D13V7, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            23                               6
  CLUS_2                            12                               2
  CLUS_3                            20                              13
  CLUS_4                            28                               0
  CLUS_5                            42                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.13) MUTATED       26     29      7     18     26      5
  AMP PEAK 13(13Q12.13) WILD-TYPE      1      7      5      1      6     13
                                 vv
clus                              CLUS_7
  AMP PEAK 13(13Q12.13) MUTATED       14
  AMP PEAK 13(13Q12.13) WILD-TYPE      6
D13V8, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            29                               7
  CLUS_3                             7                               5
  CLUS_4                            18                               1
  CLUS_5                            26                               6
  CLUS_6                             5                              13
  CLUS_7                            14                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.13) MUTATED       15     38     16      5     35
  AMP PEAK 13(13Q12.13) WILD-TYPE      3      4      1      3     21
D13V9, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            15                               3
  CLUS_2                            38                               4
  CLUS_3                            16                               1
  CLUS_4                             5                               3
  CLUS_5                            35                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED       19     55     35
  AMP PEAK 13(13Q12.13) WILD-TYPE      3      8     21
D13V10, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            19                               3
  CLUS_2                            55                               8
  CLUS_3                            35                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.13) MUTATED        8     13     12     11
  AMP PEAK 13(13Q12.13) WILD-TYPE      1      1      2      2
D13V11, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                             8                               1
  CLUS_2                            13                               1
  CLUS_3                            12                               2
  CLUS_4                            11                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.13) MUTATED        8     10     16      5      5
  AMP PEAK 13(13Q12.13) WILD-TYPE      1      3      2      0      0
D13V12, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                             8                               1
  CLUS_2                            10                               3
  CLUS_3                            16                               2
  CLUS_4                             5                               0
  CLUS_5                             5                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(13Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED       19     13     17
  AMP PEAK 14(13Q12.2) WILD-TYPE      6      9      5
D14V1, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           19                              6
  CLUS_2                           13                              9
  CLUS_3                           17                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q12.2) MUTATED        3      8      9      8      5      5
  AMP PEAK 14(13Q12.2) WILD-TYPE      3      5      4      1      3      4
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 14(13Q12.2) MUTATED        8      3
  AMP PEAK 14(13Q12.2) WILD-TYPE      0      0
D14V2, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            8                              5
  CLUS_3                            9                              4
  CLUS_4                            8                              1
  CLUS_5                            5                              3
  CLUS_6                            5                              4
  CLUS_7                            8                              0
  CLUS_8                            3                              0
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.2) MUTATED       36     32     29     28
  AMP PEAK 14(13Q12.2) WILD-TYPE     30      0      2      8
D14V3, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           36                             30
  CLUS_2                           32                              0
  CLUS_3                           29                              2
  CLUS_4                           28                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED       26     30     21
  AMP PEAK 14(13Q12.2) WILD-TYPE      2      9      8
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           26                              2
  CLUS_2                           30                              9
  CLUS_3                           21                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED       24     28     42
  AMP PEAK 14(13Q12.2) WILD-TYPE      9     12     11
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           24                              9
  CLUS_2                           28                             12
  CLUS_3                           42                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q12.2) MUTATED       19     16     22      4     20     13
  AMP PEAK 14(13Q12.2) WILD-TYPE      6      7      7      2      9      1
D14V6, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           19                              6
  CLUS_2                           16                              7
  CLUS_3                           22                              7
  CLUS_4                            4                              2
  CLUS_5                           20                              9
  CLUS_6                           13                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q12.2) MUTATED       23     12     19     28     42
  AMP PEAK 14(13Q12.2) WILD-TYPE      6      2     14      0     18
D14V7, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           23                              6
  CLUS_2                           12                              2
  CLUS_3                           19                             14
  CLUS_4                           28                              0
  CLUS_5                           42                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q12.2) MUTATED       26     28      7     17     26      6
  AMP PEAK 14(13Q12.2) WILD-TYPE      1      8      5      2      6     12
                                vv
clus                             CLUS_7
  AMP PEAK 14(13Q12.2) MUTATED       14
  AMP PEAK 14(13Q12.2) WILD-TYPE      6
D14V8, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           26                              1
  CLUS_2                           28                              8
  CLUS_3                            7                              5
  CLUS_4                           17                              2
  CLUS_5                           26                              6
  CLUS_6                            6                             12
  CLUS_7                           14                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q12.2) MUTATED       15     38     14      5     36
  AMP PEAK 14(13Q12.2) WILD-TYPE      3      4      3      3     20
D14V9, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           15                              3
  CLUS_2                           38                              4
  CLUS_3                           14                              3
  CLUS_4                            5                              3
  CLUS_5                           36                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED       19     53     36
  AMP PEAK 14(13Q12.2) WILD-TYPE      3     10     20
D14V10, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           19                              3
  CLUS_2                           53                             10
  CLUS_3                           36                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.2) MUTATED        7     13     12     11
  AMP PEAK 14(13Q12.2) WILD-TYPE      2      1      2      2
D14V11, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                           13                              1
  CLUS_3                           12                              2
  CLUS_4                           11                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q12.2) MUTATED        7     10     16      5      5
  AMP PEAK 14(13Q12.2) WILD-TYPE      2      3      2      0      0
D14V12, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                           10                              3
  CLUS_3                           16                              2
  CLUS_4                            5                              0
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       17     12     17
  AMP PEAK 15(13Q22.1) WILD-TYPE      8     10      5
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           17                              8
  CLUS_2                           12                             10
  CLUS_3                           17                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q22.1) MUTATED        3      6      9      8      5      4
  AMP PEAK 15(13Q22.1) WILD-TYPE      3      7      4      1      3      5
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 15(13Q22.1) MUTATED        8      3
  AMP PEAK 15(13Q22.1) WILD-TYPE      0      0
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            6                              7
  CLUS_3                            9                              4
  CLUS_4                            8                              1
  CLUS_5                            5                              3
  CLUS_6                            4                              5
  CLUS_7                            8                              0
  CLUS_8                            3                              0
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q22.1) MUTATED       34     32     28     26
  AMP PEAK 15(13Q22.1) WILD-TYPE     32      0      3     10
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           34                             32
  CLUS_2                           32                              0
  CLUS_3                           28                              3
  CLUS_4                           26                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       26     30     19
  AMP PEAK 15(13Q22.1) WILD-TYPE      2      9     10
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           26                              2
  CLUS_2                           30                              9
  CLUS_3                           19                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       23     28     39
  AMP PEAK 15(13Q22.1) WILD-TYPE     10     12     14
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           23                             10
  CLUS_2                           28                             12
  CLUS_3                           39                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q22.1) MUTATED       17     15     22      2     22     12
  AMP PEAK 15(13Q22.1) WILD-TYPE      8      8      7      4      7      2
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           17                              8
  CLUS_2                           15                              8
  CLUS_3                           22                              7
  CLUS_4                            2                              4
  CLUS_5                           22                              7
  CLUS_6                           12                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q22.1) MUTATED       21     11     17     28     42
  AMP PEAK 15(13Q22.1) WILD-TYPE      8      3     16      0     18
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           21                              8
  CLUS_2                           11                              3
  CLUS_3                           17                             16
  CLUS_4                           28                              0
  CLUS_5                           42                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q22.1) MUTATED       23     26      8     17     28      4
  AMP PEAK 15(13Q22.1) WILD-TYPE      4     10      4      2      4     14
                                vv
clus                             CLUS_7
  AMP PEAK 15(13Q22.1) MUTATED       13
  AMP PEAK 15(13Q22.1) WILD-TYPE      7
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           23                              4
  CLUS_2                           26                             10
  CLUS_3                            8                              4
  CLUS_4                           17                              2
  CLUS_5                           28                              4
  CLUS_6                            4                             14
  CLUS_7                           13                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q22.1) MUTATED       16     38     11      6     34
  AMP PEAK 15(13Q22.1) WILD-TYPE      2      4      6      2     22
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           16                              2
  CLUS_2                           38                              4
  CLUS_3                           11                              6
  CLUS_4                            6                              2
  CLUS_5                           34                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       18     53     34
  AMP PEAK 15(13Q22.1) WILD-TYPE      4     10     22
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           18                              4
  CLUS_2                           53                             10
  CLUS_3                           34                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q22.1) MUTATED        7     12     12     11
  AMP PEAK 15(13Q22.1) WILD-TYPE      2      2      2      2
D15V11, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                           12                              2
  CLUS_3                           12                              2
  CLUS_4                           11                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q22.1) MUTATED        6     10     16      5      5
  AMP PEAK 15(13Q22.1) WILD-TYPE      3      3      2      0      0
D15V12, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                           10                              3
  CLUS_3                           16                              2
  CLUS_4                            5                              0
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED        0      3      1
  AMP PEAK 16(15Q26.1) WILD-TYPE     25     19     21
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            0                             25
  CLUS_2                            3                             19
  CLUS_3                            1                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.1) MUTATED        0      2      0      0      0      0
  AMP PEAK 16(15Q26.1) WILD-TYPE      6     11     13      9      8      9
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 16(15Q26.1) MUTATED        2      0
  AMP PEAK 16(15Q26.1) WILD-TYPE      6      3
D16V2, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            2                             11
  CLUS_3                            0                             13
  CLUS_4                            0                              9
  CLUS_5                            0                              8
  CLUS_6                            0                              9
  CLUS_7                            2                              6
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.1) MUTATED        6      2      2      3
  AMP PEAK 16(15Q26.1) WILD-TYPE     60     30     29     33
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            6                             60
  CLUS_2                            2                             30
  CLUS_3                            2                             29
  CLUS_4                            3                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED        1      4      4
  AMP PEAK 16(15Q26.1) WILD-TYPE     27     35     25
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            1                             27
  CLUS_2                            4                             35
  CLUS_3                            4                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED        3      6      2
  AMP PEAK 16(15Q26.1) WILD-TYPE     30     34     51
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                            6                             34
  CLUS_3                            2                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.1) MUTATED        2      2      1      1      5      0
  AMP PEAK 16(15Q26.1) WILD-TYPE     23     21     28      5     24     14
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            2                             21
  CLUS_3                            1                             28
  CLUS_4                            1                              5
  CLUS_5                            5                             24
  CLUS_6                            0                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.1) MUTATED        3      0      2      4      4
  AMP PEAK 16(15Q26.1) WILD-TYPE     26     14     31     24     56
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                            0                             14
  CLUS_3                            2                             31
  CLUS_4                            4                             24
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.1) MUTATED        2      1      3      2      4      1
  AMP PEAK 16(15Q26.1) WILD-TYPE     25     35      9     17     28     17
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.1) MUTATED        0
  AMP PEAK 16(15Q26.1) WILD-TYPE     20
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            1                             35
  CLUS_3                            3                              9
  CLUS_4                            2                             17
  CLUS_5                            4                             28
  CLUS_6                            1                             17
  CLUS_7                            0                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.1) MUTATED        1      4      1      1      4
  AMP PEAK 16(15Q26.1) WILD-TYPE     17     38     16      7     52
D16V9, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            1                             17
  CLUS_2                            4                             38
  CLUS_3                            1                             16
  CLUS_4                            1                              7
  CLUS_5                            4                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED        2      5      4
  AMP PEAK 16(15Q26.1) WILD-TYPE     20     58     52
D16V10, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            5                             58
  CLUS_3                            4                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.1) MUTATED        0      1      2      2
  AMP PEAK 16(15Q26.1) WILD-TYPE      9     13     12     11
D16V11, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                             13
  CLUS_3                            2                             12
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.1) MUTATED        0      1      3      1      0
  AMP PEAK 16(15Q26.1) WILD-TYPE      9     12     15      4      5
D16V12, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                             12
  CLUS_3                            3                             15
  CLUS_4                            1                              4
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED        7      3      9
  AMP PEAK 17(16P11.2) WILD-TYPE     18     19     13
D17V1, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                            3                             19
  CLUS_3                            9                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(16P11.2) MUTATED        2      2      4      3      3      1
  AMP PEAK 17(16P11.2) WILD-TYPE      4     11      9      6      5      8
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 17(16P11.2) MUTATED        4      0
  AMP PEAK 17(16P11.2) WILD-TYPE      4      3
D17V2, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                             11
  CLUS_3                            4                              9
  CLUS_4                            3                              6
  CLUS_5                            3                              5
  CLUS_6                            1                              8
  CLUS_7                            4                              4
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(16P11.2) MUTATED        8     14     14     11
  AMP PEAK 17(16P11.2) WILD-TYPE     58     18     17     25
D17V3, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            8                             58
  CLUS_2                           14                             18
  CLUS_3                           14                             17
  CLUS_4                           11                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED       11      7     10
  AMP PEAK 17(16P11.2) WILD-TYPE     17     32     19
D17V4, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           11                             17
  CLUS_2                            7                             32
  CLUS_3                           10                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED       12      9     12
  AMP PEAK 17(16P11.2) WILD-TYPE     21     31     41
D17V5, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           12                             21
  CLUS_2                            9                             31
  CLUS_3                           12                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(16P11.2) MUTATED       10      5      7      1      6      4
  AMP PEAK 17(16P11.2) WILD-TYPE     15     18     22      5     23     10
D17V6, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           10                             15
  CLUS_2                            5                             18
  CLUS_3                            7                             22
  CLUS_4                            1                              5
  CLUS_5                            6                             23
  CLUS_6                            4                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(16P11.2) MUTATED       11      2      4     12     17
  AMP PEAK 17(16P11.2) WILD-TYPE     18     12     29     16     43
D17V7, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            2                             12
  CLUS_3                            4                             29
  CLUS_4                           12                             16
  CLUS_5                           17                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(16P11.2) MUTATED        7      7      5      9     11      2
  AMP PEAK 17(16P11.2) WILD-TYPE     20     29      7     10     21     16
                                vv
clus                             CLUS_7
  AMP PEAK 17(16P11.2) MUTATED        5
  AMP PEAK 17(16P11.2) WILD-TYPE     15
D17V8, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                            7                             29
  CLUS_3                            5                              7
  CLUS_4                            9                             10
  CLUS_5                           11                             21
  CLUS_6                            2                             16
  CLUS_7                            5                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(16P11.2) MUTATED        5     17      2      4     13
  AMP PEAK 17(16P11.2) WILD-TYPE     13     25     15      4     43
D17V9, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                           17                             25
  CLUS_3                            2                             15
  CLUS_4                            4                              4
  CLUS_5                           13                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED        6     20     15
  AMP PEAK 17(16P11.2) WILD-TYPE     16     43     41
D17V10, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                           20                             43
  CLUS_3                           15                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(16P11.2) MUTATED        3      6      3      3
  AMP PEAK 17(16P11.2) WILD-TYPE      6      8     11     10
D17V11, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            6                              8
  CLUS_3                            3                             11
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(16P11.2) MUTATED        3      4      5      1      2
  AMP PEAK 17(16P11.2) WILD-TYPE      6      9     13      4      3
D17V12, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            4                              9
  CLUS_3                            5                             13
  CLUS_4                            1                              4
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED        2     10      9
  AMP PEAK 18(17Q12) WILD-TYPE     23     12     13
D18V1, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          2                           23
  CLUS_2                         10                           12
  CLUS_3                          9                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(17Q12) MUTATED        1      4      2      4      1      2      6
  AMP PEAK 18(17Q12) WILD-TYPE      5      9     11      5      7      7      2
                              vv
clus                           CLUS_8
  AMP PEAK 18(17Q12) MUTATED        1
  AMP PEAK 18(17Q12) WILD-TYPE      2
D18V2, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          1                            5
  CLUS_2                          4                            9
  CLUS_3                          2                           11
  CLUS_4                          4                            5
  CLUS_5                          1                            7
  CLUS_6                          2                            7
  CLUS_7                          6                            2
  CLUS_8                          1                            2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q12) MUTATED       13      4     16     13
  AMP PEAK 18(17Q12) WILD-TYPE     53     28     15     23
D18V3, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         13                           53
  CLUS_2                          4                           28
  CLUS_3                         16                           15
  CLUS_4                         13                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED       10      8      7
  AMP PEAK 18(17Q12) WILD-TYPE     18     31     22
D18V4, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         10                           18
  CLUS_2                          8                           31
  CLUS_3                          7                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED       13     11     11
  AMP PEAK 18(17Q12) WILD-TYPE     20     29     42
D18V5, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         13                           20
  CLUS_2                         11                           29
  CLUS_3                         11                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17Q12) MUTATED        9      6      7      2      8      3
  AMP PEAK 18(17Q12) WILD-TYPE     16     17     22      4     21     11
D18V6, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          9                           16
  CLUS_2                          6                           17
  CLUS_3                          7                           22
  CLUS_4                          2                            4
  CLUS_5                          8                           21
  CLUS_6                          3                           11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17Q12) MUTATED        6      4      6     11     19
  AMP PEAK 18(17Q12) WILD-TYPE     23     10     27     17     41
D18V7, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          6                           23
  CLUS_2                          4                           10
  CLUS_3                          6                           27
  CLUS_4                         11                           17
  CLUS_5                         19                           41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(17Q12) MUTATED        9      6      2      8     14      2      5
  AMP PEAK 18(17Q12) WILD-TYPE     18     30     10     11     18     16     15
D18V8, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          9                           18
  CLUS_2                          6                           30
  CLUS_3                          2                           10
  CLUS_4                          8                           11
  CLUS_5                         14                           18
  CLUS_6                          2                           16
  CLUS_7                          5                           15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17Q12) MUTATED        4     12      1      4     16
  AMP PEAK 18(17Q12) WILD-TYPE     14     30     16      4     40
D18V9, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          4                           14
  CLUS_2                         12                           30
  CLUS_3                          1                           16
  CLUS_4                          4                            4
  CLUS_5                         16                           40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED        7     14     16
  AMP PEAK 18(17Q12) WILD-TYPE     15     49     40
D18V10, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          7                           15
  CLUS_2                         14                           49
  CLUS_3                         16                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q12) MUTATED        1      1      6      3
  AMP PEAK 18(17Q12) WILD-TYPE      8     13      8     10
D18V11, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          1                            8
  CLUS_2                          1                           13
  CLUS_3                          6                            8
  CLUS_4                          3                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17Q12) MUTATED        2      2      5      0      2
  AMP PEAK 18(17Q12) WILD-TYPE      7     11     13      5      3
D18V12, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          2                           11
  CLUS_3                          5                           13
  CLUS_4                          0                            5
  CLUS_5                          2                            3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED        4      7      8
  AMP PEAK 19(17Q24.1) WILD-TYPE     21     15     14
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            4                             21
  CLUS_2                            7                             15
  CLUS_3                            8                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.1) MUTATED        2      2      3      3      1      3
  AMP PEAK 19(17Q24.1) WILD-TYPE      4     11     10      6      7      6
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 19(17Q24.1) MUTATED        4      1
  AMP PEAK 19(17Q24.1) WILD-TYPE      4      2
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                             11
  CLUS_3                            3                             10
  CLUS_4                            3                              6
  CLUS_5                            1                              7
  CLUS_6                            3                              6
  CLUS_7                            4                              4
  CLUS_8                            1                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.1) MUTATED       13      3     16      7
  AMP PEAK 19(17Q24.1) WILD-TYPE     53     29     15     29
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           13                             53
  CLUS_2                            3                             29
  CLUS_3                           16                             15
  CLUS_4                            7                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED        9      5      6
  AMP PEAK 19(17Q24.1) WILD-TYPE     19     34     23
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            9                             19
  CLUS_2                            5                             34
  CLUS_3                            6                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED       10      8     13
  AMP PEAK 19(17Q24.1) WILD-TYPE     23     32     40
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                            8                             32
  CLUS_3                           13                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.1) MUTATED        8      5      7      1      5      5
  AMP PEAK 19(17Q24.1) WILD-TYPE     17     18     22      5     24      9
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            8                             17
  CLUS_2                            5                             18
  CLUS_3                            7                             22
  CLUS_4                            1                              5
  CLUS_5                            5                             24
  CLUS_6                            5                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q24.1) MUTATED        5      3      4     10     16
  AMP PEAK 19(17Q24.1) WILD-TYPE     24     11     29     18     44
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            3                             11
  CLUS_3                            4                             29
  CLUS_4                           10                             18
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.1) MUTATED        9      4      1      6     11      2
  AMP PEAK 19(17Q24.1) WILD-TYPE     18     32     11     13     21     16
                                vv
clus                             CLUS_7
  AMP PEAK 19(17Q24.1) MUTATED        5
  AMP PEAK 19(17Q24.1) WILD-TYPE     15
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                            4                             32
  CLUS_3                            1                             11
  CLUS_4                            6                             13
  CLUS_5                           11                             21
  CLUS_6                            2                             16
  CLUS_7                            5                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q24.1) MUTATED        3      9      2      3     14
  AMP PEAK 19(17Q24.1) WILD-TYPE     15     33     15      5     42
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                            9                             33
  CLUS_3                            2                             15
  CLUS_4                            3                              5
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED        7     10     14
  AMP PEAK 19(17Q24.1) WILD-TYPE     15     53     42
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                           10                             53
  CLUS_3                           14                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.1) MUTATED        1      2      5      2
  AMP PEAK 19(17Q24.1) WILD-TYPE      8     12      9     11
D19V11, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                             12
  CLUS_3                            5                              9
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q24.1) MUTATED        2      3      4      0      1
  AMP PEAK 19(17Q24.1) WILD-TYPE      7     10     14      5      4
D19V12, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                             10
  CLUS_3                            4                             14
  CLUS_4                            0                              5
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED        2      4      9
  AMP PEAK 20(19P13.2) WILD-TYPE     23     18     13
D20V1, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            4                             18
  CLUS_3                            9                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED        0      2      1      4      3      2
  AMP PEAK 20(19P13.2) WILD-TYPE      6     11     12      5      5      7
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 20(19P13.2) MUTATED        3      0
  AMP PEAK 20(19P13.2) WILD-TYPE      5      3
D20V2, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            2                             11
  CLUS_3                            1                             12
  CLUS_4                            4                              5
  CLUS_5                            3                              5
  CLUS_6                            2                              7
  CLUS_7                            3                              5
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED        5     11     11      9
  AMP PEAK 20(19P13.2) WILD-TYPE     61     21     20     27
D20V3, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            5                             61
  CLUS_2                           11                             21
  CLUS_3                           11                             20
  CLUS_4                            9                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED        8      7      7
  AMP PEAK 20(19P13.2) WILD-TYPE     20     32     22
D20V4, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            8                             20
  CLUS_2                            7                             32
  CLUS_3                            7                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED        9      7     10
  AMP PEAK 20(19P13.2) WILD-TYPE     24     33     43
D20V5, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            9                             24
  CLUS_2                            7                             33
  CLUS_3                           10                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED        9      2      3      1      6      5
  AMP PEAK 20(19P13.2) WILD-TYPE     16     21     26      5     23      9
D20V6, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            9                             16
  CLUS_2                            2                             21
  CLUS_3                            3                             26
  CLUS_4                            1                              5
  CLUS_5                            6                             23
  CLUS_6                            5                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19P13.2) MUTATED        5      2      3     12     14
  AMP PEAK 20(19P13.2) WILD-TYPE     24     12     30     16     46
D20V7, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            2                             12
  CLUS_3                            3                             30
  CLUS_4                           12                             16
  CLUS_5                           14                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       11      6      0      4      8      1
  AMP PEAK 20(19P13.2) WILD-TYPE     16     30     12     15     24     17
                                vv
clus                             CLUS_7
  AMP PEAK 20(19P13.2) MUTATED        6
  AMP PEAK 20(19P13.2) WILD-TYPE     14
D20V8, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                            6                             30
  CLUS_3                            0                             12
  CLUS_4                            4                             15
  CLUS_5                            8                             24
  CLUS_6                            1                             17
  CLUS_7                            6                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19P13.2) MUTATED        4     10      2      3     10
  AMP PEAK 20(19P13.2) WILD-TYPE     14     32     15      5     46
D20V9, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                           10                             32
  CLUS_3                            2                             15
  CLUS_4                            3                              5
  CLUS_5                           10                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED        3     13     13
  AMP PEAK 20(19P13.2) WILD-TYPE     19     50     43
D20V10, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                           13                             50
  CLUS_3                           13                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED        1      2      2      3
  AMP PEAK 20(19P13.2) WILD-TYPE      8     12     12     10
D20V11, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                             12
  CLUS_3                            2                             12
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19P13.2) MUTATED        1      3      3      1      0
  AMP PEAK 20(19P13.2) WILD-TYPE      8     10     15      4      5
D20V12, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                             10
  CLUS_3                            3                             15
  CLUS_4                            1                              4
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q11.21) MUTATED       22     15     22
  AMP PEAK 21(20Q11.21) WILD-TYPE      3      7      0
D21V1, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            22                               3
  CLUS_2                            15                               7
  CLUS_3                            22                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20Q11.21) MUTATED        6      8     11      9      7      8
  AMP PEAK 21(20Q11.21) WILD-TYPE      0      5      2      0      1      1
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 21(20Q11.21) MUTATED        8      2
  AMP PEAK 21(20Q11.21) WILD-TYPE      0      1
D21V2, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                             6                               0
  CLUS_2                             8                               5
  CLUS_3                            11                               2
  CLUS_4                             9                               0
  CLUS_5                             7                               1
  CLUS_6                             8                               1
  CLUS_7                             8                               0
  CLUS_8                             2                               1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q11.21) MUTATED       52     32     31     31
  AMP PEAK 21(20Q11.21) WILD-TYPE     14      0      0      5
D21V3, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            52                              14
  CLUS_2                            32                               0
  CLUS_3                            31                               0
  CLUS_4                            31                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q11.21) MUTATED       28     36     23
  AMP PEAK 21(20Q11.21) WILD-TYPE      0      3      6
D21V4, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            28                               0
  CLUS_2                            36                               3
  CLUS_3                            23                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q11.21) MUTATED       27     37     50
  AMP PEAK 21(20Q11.21) WILD-TYPE      6      3      3
D21V5, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            27                               6
  CLUS_2                            37                               3
  CLUS_3                            50                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20Q11.21) MUTATED       22     19     28      5     26     14
  AMP PEAK 21(20Q11.21) WILD-TYPE      3      4      1      1      3      0
D21V6, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            22                               3
  CLUS_2                            19                               4
  CLUS_3                            28                               1
  CLUS_4                             5                               1
  CLUS_5                            26                               3
  CLUS_6                            14                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q11.21) MUTATED       26     13     26     28     52
  AMP PEAK 21(20Q11.21) WILD-TYPE      3      1      7      0      8
D21V7, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            26                               3
  CLUS_2                            13                               1
  CLUS_3                            26                               7
  CLUS_4                            28                               0
  CLUS_5                            52                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20Q11.21) MUTATED       26     32      9     19     31     10
  AMP PEAK 21(20Q11.21) WILD-TYPE      1      4      3      0      1      8
                                 vv
clus                              CLUS_7
  AMP PEAK 21(20Q11.21) MUTATED       18
  AMP PEAK 21(20Q11.21) WILD-TYPE      2
D21V8, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            32                               4
  CLUS_3                             9                               3
  CLUS_4                            19                               0
  CLUS_5                            31                               1
  CLUS_6                            10                               8
  CLUS_7                            18                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q11.21) MUTATED       17     42     13      7     46
  AMP PEAK 21(20Q11.21) WILD-TYPE      1      0      4      1     10
D21V9, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            17                               1
  CLUS_2                            42                               0
  CLUS_3                            13                               4
  CLUS_4                             7                               1
  CLUS_5                            46                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q11.21) MUTATED       20     58     47
  AMP PEAK 21(20Q11.21) WILD-TYPE      2      5      9
D21V10, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            20                               2
  CLUS_2                            58                               5
  CLUS_3                            47                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q11.21) MUTATED        8     13     14     11
  AMP PEAK 21(20Q11.21) WILD-TYPE      1      1      0      2
D21V11, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                             8                               1
  CLUS_2                            13                               1
  CLUS_3                            14                               0
  CLUS_4                            11                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q11.21) MUTATED        7     12     17      5      5
  AMP PEAK 21(20Q11.21) WILD-TYPE      2      1      1      0      0
D21V12, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                             7                               2
  CLUS_2                            12                               1
  CLUS_3                            17                               1
  CLUS_4                             5                               0
  CLUS_5                             5                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.23) MUTATED       22     15     22
  AMP PEAK 22(20Q11.23) WILD-TYPE      3      7      0
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            22                               3
  CLUS_2                            15                               7
  CLUS_3                            22                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q11.23) MUTATED        6      8     11      9      7      8
  AMP PEAK 22(20Q11.23) WILD-TYPE      0      5      2      0      1      1
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 22(20Q11.23) MUTATED        8      2
  AMP PEAK 22(20Q11.23) WILD-TYPE      0      1
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                             6                               0
  CLUS_2                             8                               5
  CLUS_3                            11                               2
  CLUS_4                             9                               0
  CLUS_5                             7                               1
  CLUS_6                             8                               1
  CLUS_7                             8                               0
  CLUS_8                             2                               1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.23) MUTATED       53     32     31     31
  AMP PEAK 22(20Q11.23) WILD-TYPE     13      0      0      5
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            53                              13
  CLUS_2                            32                               0
  CLUS_3                            31                               0
  CLUS_4                            31                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.23) MUTATED       28     36     24
  AMP PEAK 22(20Q11.23) WILD-TYPE      0      3      5
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            28                               0
  CLUS_2                            36                               3
  CLUS_3                            24                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.23) MUTATED       27     37     50
  AMP PEAK 22(20Q11.23) WILD-TYPE      6      3      3
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            27                               6
  CLUS_2                            37                               3
  CLUS_3                            50                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q11.23) MUTATED       22     19     28      5     26     14
  AMP PEAK 22(20Q11.23) WILD-TYPE      3      4      1      1      3      0
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            22                               3
  CLUS_2                            19                               4
  CLUS_3                            28                               1
  CLUS_4                             5                               1
  CLUS_5                            26                               3
  CLUS_6                            14                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q11.23) MUTATED       26     13     27     28     52
  AMP PEAK 22(20Q11.23) WILD-TYPE      3      1      6      0      8
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            26                               3
  CLUS_2                            13                               1
  CLUS_3                            27                               6
  CLUS_4                            28                               0
  CLUS_5                            52                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q11.23) MUTATED       26     33      9     19     31     10
  AMP PEAK 22(20Q11.23) WILD-TYPE      1      3      3      0      1      8
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q11.23) MUTATED       18
  AMP PEAK 22(20Q11.23) WILD-TYPE      2
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            33                               3
  CLUS_3                             9                               3
  CLUS_4                            19                               0
  CLUS_5                            31                               1
  CLUS_6                            10                               8
  CLUS_7                            18                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q11.23) MUTATED       17     42     14      7     46
  AMP PEAK 22(20Q11.23) WILD-TYPE      1      0      3      1     10
D22V9, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            17                               1
  CLUS_2                            42                               0
  CLUS_3                            14                               3
  CLUS_4                             7                               1
  CLUS_5                            46                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.23) MUTATED       20     59     47
  AMP PEAK 22(20Q11.23) WILD-TYPE      2      4      9
D22V10, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                            20                               2
  CLUS_2                            59                               4
  CLUS_3                            47                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.23) MUTATED        9     13     14     11
  AMP PEAK 22(20Q11.23) WILD-TYPE      0      1      0      2
D22V11, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                             9                               0
  CLUS_2                            13                               1
  CLUS_3                            14                               0
  CLUS_4                            11                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q11.23) MUTATED        8     12     17      5      5
  AMP PEAK 22(20Q11.23) WILD-TYPE      1      1      1      0      0
D22V12, multiclass
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  CLUS_1                             8                               1
  CLUS_2                            12                               1
  CLUS_3                            17                               1
  CLUS_4                             5                               0
  CLUS_5                             5                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(20Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.31) MUTATED       23     15     22
  AMP PEAK 23(20Q13.31) WILD-TYPE      2      7      0
D23V1, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            23                               2
  CLUS_2                            15                               7
  CLUS_3                            22                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20Q13.31) MUTATED        6      8     12      9      7      8
  AMP PEAK 23(20Q13.31) WILD-TYPE      0      5      1      0      1      1
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 23(20Q13.31) MUTATED        8      2
  AMP PEAK 23(20Q13.31) WILD-TYPE      0      1
D23V2, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                             6                               0
  CLUS_2                             8                               5
  CLUS_3                            12                               1
  CLUS_4                             9                               0
  CLUS_5                             7                               1
  CLUS_6                             8                               1
  CLUS_7                             8                               0
  CLUS_8                             2                               1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.31) MUTATED       54     32     31     31
  AMP PEAK 23(20Q13.31) WILD-TYPE     12      0      0      5
D23V3, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            54                              12
  CLUS_2                            32                               0
  CLUS_3                            31                               0
  CLUS_4                            31                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.31) MUTATED       28     36     24
  AMP PEAK 23(20Q13.31) WILD-TYPE      0      3      5
D23V4, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            28                               0
  CLUS_2                            36                               3
  CLUS_3                            24                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.31) MUTATED       27     37     50
  AMP PEAK 23(20Q13.31) WILD-TYPE      6      3      3
D23V5, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            27                               6
  CLUS_2                            37                               3
  CLUS_3                            50                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20Q13.31) MUTATED       22     19     28      5     26     14
  AMP PEAK 23(20Q13.31) WILD-TYPE      3      4      1      1      3      0
D23V6, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            22                               3
  CLUS_2                            19                               4
  CLUS_3                            28                               1
  CLUS_4                             5                               1
  CLUS_5                            26                               3
  CLUS_6                            14                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q13.31) MUTATED       26     13     27     28     53
  AMP PEAK 23(20Q13.31) WILD-TYPE      3      1      6      0      7
D23V7, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            26                               3
  CLUS_2                            13                               1
  CLUS_3                            27                               6
  CLUS_4                            28                               0
  CLUS_5                            53                               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20Q13.31) MUTATED       26     33      9     19     32     10
  AMP PEAK 23(20Q13.31) WILD-TYPE      1      3      3      0      0      8
                                 vv
clus                              CLUS_7
  AMP PEAK 23(20Q13.31) MUTATED       18
  AMP PEAK 23(20Q13.31) WILD-TYPE      2
D23V8, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            33                               3
  CLUS_3                             9                               3
  CLUS_4                            19                               0
  CLUS_5                            32                               0
  CLUS_6                            10                               8
  CLUS_7                            18                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q13.31) MUTATED       17     42     14      7     47
  AMP PEAK 23(20Q13.31) WILD-TYPE      1      0      3      1      9
D23V9, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            17                               1
  CLUS_2                            42                               0
  CLUS_3                            14                               3
  CLUS_4                             7                               1
  CLUS_5                            47                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.31) MUTATED       20     59     48
  AMP PEAK 23(20Q13.31) WILD-TYPE      2      4      8
D23V10, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                            20                               2
  CLUS_2                            59                               4
  CLUS_3                            48                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.31) MUTATED        9     13     14     11
  AMP PEAK 23(20Q13.31) WILD-TYPE      0      1      0      2
D23V11, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                             9                               0
  CLUS_2                            13                               1
  CLUS_3                            14                               0
  CLUS_4                            11                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q13.31) MUTATED        8     12     17      5      5
  AMP PEAK 23(20Q13.31) WILD-TYPE      1      1      1      0      0
D23V12, multiclass
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  CLUS_1                             8                               1
  CLUS_2                            12                               1
  CLUS_3                            17                               1
  CLUS_4                             5                               0
  CLUS_5                             5                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP22.2) MUTATED        3      1      7
  AMP PEAK 24(XP22.2) WILD-TYPE     22     21     15
D24V1, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                           1                            21
  CLUS_3                           7                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP22.2) MUTATED        1      0      3      3      2      0
  AMP PEAK 24(XP22.2) WILD-TYPE      5     13     10      6      6      9
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 24(XP22.2) MUTATED        2      0
  AMP PEAK 24(XP22.2) WILD-TYPE      6      3
D24V2, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           0                            13
  CLUS_3                           3                            10
  CLUS_4                           3                             6
  CLUS_5                           2                             6
  CLUS_6                           0                             9
  CLUS_7                           2                             6
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP22.2) MUTATED       10      7      8      7
  AMP PEAK 24(XP22.2) WILD-TYPE     56     25     23     29
D24V3, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                          10                            56
  CLUS_2                           7                            25
  CLUS_3                           8                            23
  CLUS_4                           7                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP22.2) MUTATED        7      5      8
  AMP PEAK 24(XP22.2) WILD-TYPE     21     34     21
D24V4, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           7                            21
  CLUS_2                           5                            34
  CLUS_3                           8                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP22.2) MUTATED        6      9     11
  AMP PEAK 24(XP22.2) WILD-TYPE     27     31     42
D24V5, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           9                            31
  CLUS_3                          11                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP22.2) MUTATED        6      5     10      0      4      1
  AMP PEAK 24(XP22.2) WILD-TYPE     19     18     19      6     25     13
D24V6, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           6                            19
  CLUS_2                           5                            18
  CLUS_3                          10                            19
  CLUS_4                           0                             6
  CLUS_5                           4                            25
  CLUS_6                           1                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XP22.2) MUTATED        6      1      7      8     10
  AMP PEAK 24(XP22.2) WILD-TYPE     23     13     26     20     50
D24V7, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           6                            23
  CLUS_2                           1                            13
  CLUS_3                           7                            26
  CLUS_4                           8                            20
  CLUS_5                          10                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP22.2) MUTATED        5      6      3      5      9      2
  AMP PEAK 24(XP22.2) WILD-TYPE     22     30      9     14     23     16
                               vv
clus                            CLUS_7
  AMP PEAK 24(XP22.2) MUTATED        2
  AMP PEAK 24(XP22.2) WILD-TYPE     18
D24V8, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                           6                            30
  CLUS_3                           3                             9
  CLUS_4                           5                            14
  CLUS_5                           9                            23
  CLUS_6                           2                            16
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XP22.2) MUTATED        3      9      2      2      8
  AMP PEAK 24(XP22.2) WILD-TYPE     15     33     15      6     48
D24V9, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           3                            15
  CLUS_2                           9                            33
  CLUS_3                           2                            15
  CLUS_4                           2                             6
  CLUS_5                           8                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP22.2) MUTATED        3     12      9
  AMP PEAK 24(XP22.2) WILD-TYPE     19     51     47
D24V10, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                          12                            51
  CLUS_3                           9                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP22.2) MUTATED        0      2      3      0
  AMP PEAK 24(XP22.2) WILD-TYPE      9     12     11     13
D24V11, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           2                            12
  CLUS_3                           3                            11
  CLUS_4                           0                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XP22.2) MUTATED        1      1      3      0      0
  AMP PEAK 24(XP22.2) WILD-TYPE      8     12     15      5      5
D24V12, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           1                            12
  CLUS_3                           3                            15
  CLUS_4                           0                             5
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       10      9     15
  DEL PEAK  1(1P36.11) WILD-TYPE     15     13      7
D25V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           10                             15
  CLUS_2                            9                             13
  CLUS_3                           15                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED        1      5      6      7      6      2
  DEL PEAK  1(1P36.11) WILD-TYPE      5      8      7      2      2      7
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.11) MUTATED        6      1
  DEL PEAK  1(1P36.11) WILD-TYPE      2      2
D25V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            5                              8
  CLUS_3                            6                              7
  CLUS_4                            7                              2
  CLUS_5                            6                              2
  CLUS_6                            2                              7
  CLUS_7                            6                              2
  CLUS_8                            1                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       25     15     19     16
  DEL PEAK  1(1P36.11) WILD-TYPE     41     17     12     20
D25V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           25                             41
  CLUS_2                           15                             17
  CLUS_3                           19                             12
  CLUS_4                           16                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       16     17      9
  DEL PEAK  1(1P36.11) WILD-TYPE     12     22     20
D25V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           16                             12
  CLUS_2                           17                             22
  CLUS_3                            9                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       15     15     24
  DEL PEAK  1(1P36.11) WILD-TYPE     18     25     29
D25V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             18
  CLUS_2                           15                             25
  CLUS_3                           24                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       11      8     14      2     12      7
  DEL PEAK  1(1P36.11) WILD-TYPE     14     15     15      4     17      7
D25V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           11                             14
  CLUS_2                            8                             15
  CLUS_3                           14                             15
  CLUS_4                            2                              4
  CLUS_5                           12                             17
  CLUS_6                            7                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       14      7      9     14     31
  DEL PEAK  1(1P36.11) WILD-TYPE     15      7     24     14     29
D25V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           14                             15
  CLUS_2                            7                              7
  CLUS_3                            9                             24
  CLUS_4                           14                             14
  CLUS_5                           31                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       15     14      3      8     23      5
  DEL PEAK  1(1P36.11) WILD-TYPE     12     22      9     11      9     13
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED        7
  DEL PEAK  1(1P36.11) WILD-TYPE     13
D25V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                           14                             22
  CLUS_3                            3                              9
  CLUS_4                            8                             11
  CLUS_5                           23                              9
  CLUS_6                            5                             13
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       10     19      5      5     25
  DEL PEAK  1(1P36.11) WILD-TYPE      8     23     12      3     31
D25V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           10                              8
  CLUS_2                           19                             23
  CLUS_3                            5                             12
  CLUS_4                            5                              3
  CLUS_5                           25                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       15     25     24
  DEL PEAK  1(1P36.11) WILD-TYPE      7     38     32
D25V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                              7
  CLUS_2                           25                             38
  CLUS_3                           24                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED        6      5      7      4
  DEL PEAK  1(1P36.11) WILD-TYPE      3      9      7      9
D25V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            5                              9
  CLUS_3                            7                              7
  CLUS_4                            4                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        4      4      9      2      3
  DEL PEAK  1(1P36.11) WILD-TYPE      5      9      9      3      2
D25V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            4                              9
  CLUS_3                            9                              9
  CLUS_4                            2                              3
  CLUS_5                            3                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED        6      5      9
  DEL PEAK  2(1P33) WILD-TYPE     19     17     13
D26V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         6                          19
  CLUS_2                         5                          17
  CLUS_3                         9                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED        1      1      4      5      6      0      3
  DEL PEAK  2(1P33) WILD-TYPE      5     12      9      4      2      9      5
                             vv
clus                          CLUS_8
  DEL PEAK  2(1P33) MUTATED        0
  DEL PEAK  2(1P33) WILD-TYPE      3
D26V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         1                          12
  CLUS_3                         4                           9
  CLUS_4                         5                           4
  CLUS_5                         6                           2
  CLUS_6                         0                           9
  CLUS_7                         3                           5
  CLUS_8                         0                           3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       14     13     16     10
  DEL PEAK  2(1P33) WILD-TYPE     52     19     15     26
D26V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        14                          52
  CLUS_2                        13                          19
  CLUS_3                        16                          15
  CLUS_4                        10                          26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       12     16      6
  DEL PEAK  2(1P33) WILD-TYPE     16     23     23
D26V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          16
  CLUS_2                        16                          23
  CLUS_3                         6                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED        9     11     18
  DEL PEAK  2(1P33) WILD-TYPE     24     29     35
D26V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         9                          24
  CLUS_2                        11                          29
  CLUS_3                        18                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P33) MUTATED        6      4      9      1     11      7
  DEL PEAK  2(1P33) WILD-TYPE     19     19     20      5     18      7
D26V6, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         6                          19
  CLUS_2                         4                          19
  CLUS_3                         9                          20
  CLUS_4                         1                           5
  CLUS_5                        11                          18
  CLUS_6                         7                           7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       10      5      6     12     20
  DEL PEAK  2(1P33) WILD-TYPE     19      9     27     16     40
D26V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          19
  CLUS_2                         5                           9
  CLUS_3                         6                          27
  CLUS_4                        12                          16
  CLUS_5                        20                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       12     10      3      7     14      2      5
  DEL PEAK  2(1P33) WILD-TYPE     15     26      9     12     18     16     15
D26V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          15
  CLUS_2                        10                          26
  CLUS_3                         3                           9
  CLUS_4                         7                          12
  CLUS_5                        14                          18
  CLUS_6                         2                          16
  CLUS_7                         5                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED        7     17      3      2     16
  DEL PEAK  2(1P33) WILD-TYPE     11     25     14      6     40
D26V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         7                          11
  CLUS_2                        17                          25
  CLUS_3                         3                          14
  CLUS_4                         2                           6
  CLUS_5                        16                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       10     20     15
  DEL PEAK  2(1P33) WILD-TYPE     12     43     41
D26V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          12
  CLUS_2                        20                          43
  CLUS_3                        15                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED        5      4      4      4
  DEL PEAK  2(1P33) WILD-TYPE      4     10     10      9
D26V11, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         5                           4
  CLUS_2                         4                          10
  CLUS_3                         4                          10
  CLUS_4                         4                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED        4      2      7      2      2
  DEL PEAK  2(1P33) WILD-TYPE      5     11     11      3      3
D26V12, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         4                           5
  CLUS_2                         2                          11
  CLUS_3                         7                          11
  CLUS_4                         2                           3
  CLUS_5                         2                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  3(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED        5      6      8
  DEL PEAK  3(1P13.2) WILD-TYPE     20     16     14
D27V1, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           5                            20
  CLUS_2                           6                            16
  CLUS_3                           8                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED        1      2      4      4      6      0
  DEL PEAK  3(1P13.2) WILD-TYPE      5     11      9      5      2      9
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(1P13.2) MUTATED        2      0
  DEL PEAK  3(1P13.2) WILD-TYPE      6      3
D27V2, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           2                            11
  CLUS_3                           4                             9
  CLUS_4                           4                             5
  CLUS_5                           6                             2
  CLUS_6                           0                             9
  CLUS_7                           2                             6
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       11     15     14     14
  DEL PEAK  3(1P13.2) WILD-TYPE     55     17     17     22
D27V3, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          11                            55
  CLUS_2                          15                            17
  CLUS_3                          14                            17
  CLUS_4                          14                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       10     17      9
  DEL PEAK  3(1P13.2) WILD-TYPE     18     22     20
D27V4, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            18
  CLUS_2                          17                            22
  CLUS_3                           9                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       13     11     17
  DEL PEAK  3(1P13.2) WILD-TYPE     20     29     36
D27V5, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          13                            20
  CLUS_2                          11                            29
  CLUS_3                          17                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED        8      5      8      2     11      7
  DEL PEAK  3(1P13.2) WILD-TYPE     17     18     21      4     18      7
D27V6, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           8                            17
  CLUS_2                           5                            18
  CLUS_3                           8                            21
  CLUS_4                           2                             4
  CLUS_5                          11                            18
  CLUS_6                           7                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED       10      3      9     13     19
  DEL PEAK  3(1P13.2) WILD-TYPE     19     11     24     15     41
D27V7, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            19
  CLUS_2                           3                            11
  CLUS_3                           9                            24
  CLUS_4                          13                            15
  CLUS_5                          19                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED       16      7      3      8     12      3
  DEL PEAK  3(1P13.2) WILD-TYPE     11     29      9     11     20     15
                               vv
clus                            CLUS_7
  DEL PEAK  3(1P13.2) MUTATED        5
  DEL PEAK  3(1P13.2) WILD-TYPE     15
D27V8, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          16                            11
  CLUS_2                           7                            29
  CLUS_3                           3                             9
  CLUS_4                           8                            11
  CLUS_5                          12                            20
  CLUS_6                           3                            15
  CLUS_7                           5                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED        8     16      4      2     15
  DEL PEAK  3(1P13.2) WILD-TYPE     10     26     13      6     41
D27V9, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           8                            10
  CLUS_2                          16                            26
  CLUS_3                           4                            13
  CLUS_4                           2                             6
  CLUS_5                          15                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       10     21     14
  DEL PEAK  3(1P13.2) WILD-TYPE     12     42     42
D27V10, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          21                            42
  CLUS_3                          14                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED        5      6      4      5
  DEL PEAK  3(1P13.2) WILD-TYPE      4      8     10      8
D27V11, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           6                             8
  CLUS_3                           4                            10
  CLUS_4                           5                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED        4      3      8      2      3
  DEL PEAK  3(1P13.2) WILD-TYPE      5     10     10      3      2
D27V12, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           3                            10
  CLUS_3                           8                            10
  CLUS_4                           2                             3
  CLUS_5                           3                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  4(2P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        2      5      3
  DEL PEAK  4(2P12) WILD-TYPE     23     17     19
D28V1, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          23
  CLUS_2                         5                          17
  CLUS_3                         3                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        0      3      1      1      2      1      2
  DEL PEAK  4(2P12) WILD-TYPE      6     10     12      8      6      8      6
                             vv
clus                          CLUS_8
  DEL PEAK  4(2P12) MUTATED        0
  DEL PEAK  4(2P12) WILD-TYPE      3
D28V2, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                           6
  CLUS_2                         3                          10
  CLUS_3                         1                          12
  CLUS_4                         1                           8
  CLUS_5                         2                           6
  CLUS_6                         1                           8
  CLUS_7                         2                           6
  CLUS_8                         0                           3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        0      8      0      5
  DEL PEAK  4(2P12) WILD-TYPE     66     24     31     31
D28V3, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          66
  CLUS_2                         8                          24
  CLUS_3                         0                          31
  CLUS_4                         5                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        1      1      1
  DEL PEAK  4(2P12) WILD-TYPE     27     38     28
D28V4, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                          27
  CLUS_2                         1                          38
  CLUS_3                         1                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        5      3      3
  DEL PEAK  4(2P12) WILD-TYPE     28     37     50
D28V5, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         5                          28
  CLUS_2                         3                          37
  CLUS_3                         3                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2P12) MUTATED        4      4      1      1      1      0
  DEL PEAK  4(2P12) WILD-TYPE     21     19     28      5     28     14
D28V6, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         4                          21
  CLUS_2                         4                          19
  CLUS_3                         1                          28
  CLUS_4                         1                           5
  CLUS_5                         1                          28
  CLUS_6                         0                          14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        2      1      2      1      7
  DEL PEAK  4(2P12) WILD-TYPE     27     13     31     27     53
D28V7, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          27
  CLUS_2                         1                          13
  CLUS_3                         2                          31
  CLUS_4                         1                          27
  CLUS_5                         7                          53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        2      1      0      0      4      4      2
  DEL PEAK  4(2P12) WILD-TYPE     25     35     12     19     28     14     18
D28V8, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          25
  CLUS_2                         1                          35
  CLUS_3                         0                          12
  CLUS_4                         0                          19
  CLUS_5                         4                          28
  CLUS_6                         4                          14
  CLUS_7                         2                          18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        1      1      1      0      9
  DEL PEAK  4(2P12) WILD-TYPE     17     41     16      8     47
D28V9, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                          17
  CLUS_2                         1                          41
  CLUS_3                         1                          16
  CLUS_4                         0                           8
  CLUS_5                         9                          47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        1      3      8
  DEL PEAK  4(2P12) WILD-TYPE     21     60     48
D28V10, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                          21
  CLUS_2                         3                          60
  CLUS_3                         8                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        1      1      0      0
  DEL PEAK  4(2P12) WILD-TYPE      8     13     14     13
D28V11, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  4(2P12) MUTATED"
clus
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                          2                          48 
                 TCGA-AF-2687                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-4110                  TCGA-AF-6655 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-6672                  TCGA-AG-3725 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3732 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4021                  TCGA-AG-4022 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6621                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6464                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        0      1      0      0      1
  DEL PEAK  4(2P12) WILD-TYPE      9     12     18      5      4
D28V12, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  4(2P12) MUTATED"
clus
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                          2                          48 
                 TCGA-AF-2687                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-4110                  TCGA-AF-6655 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-6672                  TCGA-AG-3725 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3732 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4021                  TCGA-AG-4022 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6621                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6464                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 

Clustering(29) Variable = DEL PEAK  5(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED        5      5      3
  DEL PEAK  5(3P14.2) WILD-TYPE     20     17     19
D29V1, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           5                            20
  CLUS_2                           5                            17
  CLUS_3                           3                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P14.2) MUTATED        1      4      1      1      1      2
  DEL PEAK  5(3P14.2) WILD-TYPE      5      9     12      8      7      7
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  5(3P14.2) MUTATED        3      0
  DEL PEAK  5(3P14.2) WILD-TYPE      5      3
D29V2, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           4                             9
  CLUS_3                           1                            12
  CLUS_4                           1                             8
  CLUS_5                           1                             7
  CLUS_6                           2                             7
  CLUS_7                           3                             5
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P14.2) MUTATED       11      8      5      7
  DEL PEAK  5(3P14.2) WILD-TYPE     55     24     26     29
D29V3, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          11                            55
  CLUS_2                           8                            24
  CLUS_3                           5                            26
  CLUS_4                           7                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED        5      8      5
  DEL PEAK  5(3P14.2) WILD-TYPE     23     31     24
D29V4, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           5                            23
  CLUS_2                           8                            31
  CLUS_3                           5                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED        9      5      8
  DEL PEAK  5(3P14.2) WILD-TYPE     24     35     45
D29V5, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           9                            24
  CLUS_2                           5                            35
  CLUS_3                           8                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P14.2) MUTATED        5      5      4      2      5      1
  DEL PEAK  5(3P14.2) WILD-TYPE     20     18     25      4     24     13
D29V6, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           5                            20
  CLUS_2                           5                            18
  CLUS_3                           4                            25
  CLUS_4                           2                             4
  CLUS_5                           5                            24
  CLUS_6                           1                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        4      5      6      4     12
  DEL PEAK  5(3P14.2) WILD-TYPE     25      9     27     24     48
D29V7, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           5                             9
  CLUS_3                           6                            27
  CLUS_4                           4                            24
  CLUS_5                          12                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P14.2) MUTATED        3      9      3      4      6      3
  DEL PEAK  5(3P14.2) WILD-TYPE     24     27      9     15     26     15
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P14.2) MUTATED        3
  DEL PEAK  5(3P14.2) WILD-TYPE     17
D29V8, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           9                            27
  CLUS_3                           3                             9
  CLUS_4                           4                            15
  CLUS_5                           6                            26
  CLUS_6                           3                            15
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        2     10      4      2     11
  DEL PEAK  5(3P14.2) WILD-TYPE     16     32     13      6     45
D29V9, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                          10                            32
  CLUS_3                           4                            13
  CLUS_4                           2                             6
  CLUS_5                          11                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED        5     13     11
  DEL PEAK  5(3P14.2) WILD-TYPE     17     50     45
D29V10, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                          13                            50
  CLUS_3                          11                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P14.2) MUTATED        3      2      5      1
  DEL PEAK  5(3P14.2) WILD-TYPE      6     12      9     12
D29V11, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           2                            12
  CLUS_3                           5                             9
  CLUS_4                           1                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        4      2      3      2      0
  DEL PEAK  5(3P14.2) WILD-TYPE      5     11     15      3      5
D29V12, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           2                            11
  CLUS_3                           3                            15
  CLUS_4                           2                             3
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  6(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q26.31) MUTATED        3      2      3
  DEL PEAK  6(3Q26.31) WILD-TYPE     22     20     19
D30V1, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            3                             22
  CLUS_2                            2                             20
  CLUS_3                            3                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q26.31) MUTATED        0      1      1      2      1      1
  DEL PEAK  6(3Q26.31) WILD-TYPE      6     12     12      7      7      8
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  6(3Q26.31) MUTATED        2      0
  DEL PEAK  6(3Q26.31) WILD-TYPE      6      3
D30V2, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            1                             12
  CLUS_3                            1                             12
  CLUS_4                            2                              7
  CLUS_5                            1                              7
  CLUS_6                            1                              8
  CLUS_7                            2                              6
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q26.31) MUTATED        9      6      1      2
  DEL PEAK  6(3Q26.31) WILD-TYPE     57     26     30     34
D30V3, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            9                             57
  CLUS_2                            6                             26
  CLUS_3                            1                             30
  CLUS_4                            2                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q26.31) MUTATED        2      3      5
  DEL PEAK  6(3Q26.31) WILD-TYPE     26     36     24
D30V4, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            2                             26
  CLUS_2                            3                             36
  CLUS_3                            5                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q26.31) MUTATED        6      4      5
  DEL PEAK  6(3Q26.31) WILD-TYPE     27     36     48
D30V5, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            4                             36
  CLUS_3                            5                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q26.31) MUTATED        4      2      2      2      5      0
  DEL PEAK  6(3Q26.31) WILD-TYPE     21     21     27      4     24     14
D30V6, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            4                             21
  CLUS_2                            2                             21
  CLUS_3                            2                             27
  CLUS_4                            2                              4
  CLUS_5                            5                             24
  CLUS_6                            0                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        2      2      7      2      5
  DEL PEAK  6(3Q26.31) WILD-TYPE     27     12     26     26     55
D30V7, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            2                             12
  CLUS_3                            7                             26
  CLUS_4                            2                             26
  CLUS_5                            5                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q26.31) MUTATED        2      6      2      0      4      3
  DEL PEAK  6(3Q26.31) WILD-TYPE     25     30     10     19     28     15
                                vv
clus                             CLUS_7
  DEL PEAK  6(3Q26.31) MUTATED        1
  DEL PEAK  6(3Q26.31) WILD-TYPE     19
D30V8, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            6                             30
  CLUS_3                            2                             10
  CLUS_4                            0                             19
  CLUS_5                            4                             28
  CLUS_6                            3                             15
  CLUS_7                            1                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        2      4      1      3      6
  DEL PEAK  6(3Q26.31) WILD-TYPE     16     38     16      5     50
D30V9, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            4                             38
  CLUS_3                            1                             16
  CLUS_4                            3                              5
  CLUS_5                            6                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q26.31) MUTATED        6      5      5
  DEL PEAK  6(3Q26.31) WILD-TYPE     16     58     51
D30V10, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            5                             58
  CLUS_3                            5                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q26.31) MUTATED        1      1      3      1
  DEL PEAK  6(3Q26.31) WILD-TYPE      8     13     11     12
D30V11, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                             13
  CLUS_3                            3                             11
  CLUS_4                            1                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        3      1      2      0      0
  DEL PEAK  6(3Q26.31) WILD-TYPE      6     12     16      5      5
D30V12, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            1                             12
  CLUS_3                            2                             16
  CLUS_4                            0                              5
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  7(4P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P13) MUTATED        8      9      9
  DEL PEAK  7(4P13) WILD-TYPE     17     13     13
D31V1, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         8                          17
  CLUS_2                         9                          13
  CLUS_3                         9                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(4P13) MUTATED        1      7      4      5      4      0      5
  DEL PEAK  7(4P13) WILD-TYPE      5      6      9      4      4      9      3
                             vv
clus                          CLUS_8
  DEL PEAK  7(4P13) MUTATED        0
  DEL PEAK  7(4P13) WILD-TYPE      3
D31V2, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         7                           6
  CLUS_3                         4                           9
  CLUS_4                         5                           4
  CLUS_5                         4                           4
  CLUS_6                         0                           9
  CLUS_7                         5                           3
  CLUS_8                         0                           3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4P13) MUTATED       15     21     12     12
  DEL PEAK  7(4P13) WILD-TYPE     51     11     19     24
D31V3, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        15                          51
  CLUS_2                        21                          11
  CLUS_3                        12                          19
  CLUS_4                        12                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P13) MUTATED       15     11      8
  DEL PEAK  7(4P13) WILD-TYPE     13     28     21
D31V4, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        15                          13
  CLUS_2                        11                          28
  CLUS_3                         8                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P13) MUTATED       10     15     18
  DEL PEAK  7(4P13) WILD-TYPE     23     25     35
D31V5, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        10                          23
  CLUS_2                        15                          25
  CLUS_3                        18                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4P13) MUTATED        8      8      9      0     12      6
  DEL PEAK  7(4P13) WILD-TYPE     17     15     20      6     17      8
D31V6, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         8                          17
  CLUS_2                         8                          15
  CLUS_3                         9                          20
  CLUS_4                         0                           6
  CLUS_5                        12                          17
  CLUS_6                         6                           8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED       13      4     11      8     24
  DEL PEAK  7(4P13) WILD-TYPE     16     10     22     20     36
D31V7, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        13                          16
  CLUS_2                         4                          10
  CLUS_3                        11                          22
  CLUS_4                         8                          20
  CLUS_5                        24                          36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(4P13) MUTATED       13     13      5      4     15      5      5
  DEL PEAK  7(4P13) WILD-TYPE     14     23      7     15     17     13     15
D31V8, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        13                          14
  CLUS_2                        13                          23
  CLUS_3                         5                           7
  CLUS_4                         4                          15
  CLUS_5                        15                          17
  CLUS_6                         5                          13
  CLUS_7                         5                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED        8     15      7      3     22
  DEL PEAK  7(4P13) WILD-TYPE     10     27     10      5     34
D31V9, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         8                          10
  CLUS_2                        15                          27
  CLUS_3                         7                          10
  CLUS_4                         3                           5
  CLUS_5                        22                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P13) MUTATED       12     21     22
  DEL PEAK  7(4P13) WILD-TYPE     10     42     34
D31V10, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        12                          10
  CLUS_2                        21                          42
  CLUS_3                        22                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4P13) MUTATED        7      6      4      6
  DEL PEAK  7(4P13) WILD-TYPE      2      8     10      7
D31V11, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         7                           2
  CLUS_2                         6                           8
  CLUS_3                         4                          10
  CLUS_4                         6                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED        6      5      8      3      1
  DEL PEAK  7(4P13) WILD-TYPE      3      8     10      2      4
D31V12, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         6                           3
  CLUS_2                         5                           8
  CLUS_3                         8                          10
  CLUS_4                         3                           2
  CLUS_5                         1                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  8(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED        9      9     11
  DEL PEAK  8(4Q22.1) WILD-TYPE     16     13     11
D32V1, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           9                            16
  CLUS_2                           9                            13
  CLUS_3                          11                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED        1      6      6      8      3      1
  DEL PEAK  8(4Q22.1) WILD-TYPE      5      7      7      1      5      8
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  8(4Q22.1) MUTATED        4      0
  DEL PEAK  8(4Q22.1) WILD-TYPE      4      3
D32V2, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           6                             7
  CLUS_3                           6                             7
  CLUS_4                           8                             1
  CLUS_5                           3                             5
  CLUS_6                           1                             8
  CLUS_7                           4                             4
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED       18     23     15     17
  DEL PEAK  8(4Q22.1) WILD-TYPE     48      9     16     19
D32V3, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          18                            48
  CLUS_2                          23                             9
  CLUS_3                          15                            16
  CLUS_4                          17                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       17     16     12
  DEL PEAK  8(4Q22.1) WILD-TYPE     11     23     17
D32V4, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          17                            11
  CLUS_2                          16                            23
  CLUS_3                          12                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       15     18     20
  DEL PEAK  8(4Q22.1) WILD-TYPE     18     22     33
D32V5, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          15                            18
  CLUS_2                          18                            22
  CLUS_3                          20                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED       11      7     10      2     16      7
  DEL PEAK  8(4Q22.1) WILD-TYPE     14     16     19      4     13      7
D32V6, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          11                            14
  CLUS_2                           7                            16
  CLUS_3                          10                            19
  CLUS_4                           2                             4
  CLUS_5                          16                            13
  CLUS_6                           7                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED       15      7     14      8     29
  DEL PEAK  8(4Q22.1) WILD-TYPE     14      7     19     20     31
D32V7, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          15                            14
  CLUS_2                           7                             7
  CLUS_3                          14                            19
  CLUS_4                           8                            20
  CLUS_5                          29                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED       15     17      5      6     18      6
  DEL PEAK  8(4Q22.1) WILD-TYPE     12     19      7     13     14     12
                               vv
clus                            CLUS_7
  DEL PEAK  8(4Q22.1) MUTATED        6
  DEL PEAK  8(4Q22.1) WILD-TYPE     14
D32V8, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          15                            12
  CLUS_2                          17                            19
  CLUS_3                           5                             7
  CLUS_4                           6                            13
  CLUS_5                          18                            14
  CLUS_6                           6                            12
  CLUS_7                           6                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED        9     21      8      4     25
  DEL PEAK  8(4Q22.1) WILD-TYPE      9     21      9      4     31
D32V9, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           9                             9
  CLUS_2                          21                            21
  CLUS_3                           8                             9
  CLUS_4                           4                             4
  CLUS_5                          25                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       14     29     24
  DEL PEAK  8(4Q22.1) WILD-TYPE      8     34     32
D32V10, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          14                             8
  CLUS_2                          29                            34
  CLUS_3                          24                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED        7      7      8      7
  DEL PEAK  8(4Q22.1) WILD-TYPE      2      7      6      6
D32V11, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           7                             2
  CLUS_2                           7                             7
  CLUS_3                           8                             6
  CLUS_4                           7                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED        7      6     10      3      3
  DEL PEAK  8(4Q22.1) WILD-TYPE      2      7      8      2      2
D32V12, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           7                             2
  CLUS_2                           6                             7
  CLUS_3                          10                             8
  CLUS_4                           3                             2
  CLUS_5                           3                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED        8     10      8
  DEL PEAK  9(4Q35.1) WILD-TYPE     17     12     14
D33V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           8                            17
  CLUS_2                          10                            12
  CLUS_3                           8                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED        1      7      5      7      2      1
  DEL PEAK  9(4Q35.1) WILD-TYPE      5      6      8      2      6      8
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  9(4Q35.1) MUTATED        3      0
  DEL PEAK  9(4Q35.1) WILD-TYPE      5      3
D33V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           7                             6
  CLUS_3                           5                             8
  CLUS_4                           7                             2
  CLUS_5                           2                             6
  CLUS_6                           1                             8
  CLUS_7                           3                             5
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       19     22     16     15
  DEL PEAK  9(4Q35.1) WILD-TYPE     47     10     15     21
D33V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          19                            47
  CLUS_2                          22                            10
  CLUS_3                          16                            15
  CLUS_4                          15                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       18     15     13
  DEL PEAK  9(4Q35.1) WILD-TYPE     10     24     16
D33V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          18                            10
  CLUS_2                          15                            24
  CLUS_3                          13                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       15     19     18
  DEL PEAK  9(4Q35.1) WILD-TYPE     18     21     35
D33V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          15                            18
  CLUS_2                          19                            21
  CLUS_3                          18                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       11      8      9      3     15      6
  DEL PEAK  9(4Q35.1) WILD-TYPE     14     15     20      3     14      8
D33V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          11                            14
  CLUS_2                           8                            15
  CLUS_3                           9                            20
  CLUS_4                           3                             3
  CLUS_5                          15                            14
  CLUS_6                           6                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       16      6     15      9     26
  DEL PEAK  9(4Q35.1) WILD-TYPE     13      8     18     19     34
D33V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                           6                             8
  CLUS_3                          15                            18
  CLUS_4                           9                            19
  CLUS_5                          26                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       16     15      7      7     18      5
  DEL PEAK  9(4Q35.1) WILD-TYPE     11     21      5     12     14     13
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED        4
  DEL PEAK  9(4Q35.1) WILD-TYPE     16
D33V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          16                            11
  CLUS_2                          15                            21
  CLUS_3                           7                             5
  CLUS_4                           7                            12
  CLUS_5                          18                            14
  CLUS_6                           5                            13
  CLUS_7                           4                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       10     21      8      5     21
  DEL PEAK  9(4Q35.1) WILD-TYPE      8     21      9      3     35
D33V9, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          10                             8
  CLUS_2                          21                            21
  CLUS_3                           8                             9
  CLUS_4                           5                             3
  CLUS_5                          21                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       15     29     21
  DEL PEAK  9(4Q35.1) WILD-TYPE      7     34     35
D33V10, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          15                             7
  CLUS_2                          29                            34
  CLUS_3                          21                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED        7      9      7      7
  DEL PEAK  9(4Q35.1) WILD-TYPE      2      5      7      6
D33V11, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           7                             2
  CLUS_2                           9                             5
  CLUS_3                           7                             7
  CLUS_4                           7                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED        7      7     10      3      3
  DEL PEAK  9(4Q35.1) WILD-TYPE      2      6      8      2      2
D33V12, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           7                             2
  CLUS_2                           7                             6
  CLUS_3                          10                             8
  CLUS_4                           3                             2
  CLUS_5                           3                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 10(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED        3      5      9
  DEL PEAK 10(5Q12.1) WILD-TYPE     22     17     13
D34V1, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                           5                            17
  CLUS_3                           9                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED        0      4      1      7      2      0
  DEL PEAK 10(5Q12.1) WILD-TYPE      6      9     12      2      6      9
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 10(5Q12.1) MUTATED        3      0
  DEL PEAK 10(5Q12.1) WILD-TYPE      5      3
D34V2, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           4                             9
  CLUS_3                           1                            12
  CLUS_4                           7                             2
  CLUS_5                           2                             6
  CLUS_6                           0                             9
  CLUS_7                           3                             5
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       16     14     12     11
  DEL PEAK 10(5Q12.1) WILD-TYPE     50     18     19     25
D34V3, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          16                            50
  CLUS_2                          14                            18
  CLUS_3                          12                            19
  CLUS_4                          11                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       17      8     12
  DEL PEAK 10(5Q12.1) WILD-TYPE     11     31     17
D34V4, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          17                            11
  CLUS_2                           8                            31
  CLUS_3                          12                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED        9     14     18
  DEL PEAK 10(5Q12.1) WILD-TYPE     24     26     35
D34V5, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           9                            24
  CLUS_2                          14                            26
  CLUS_3                          18                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED        7      5     11      0     12      6
  DEL PEAK 10(5Q12.1) WILD-TYPE     18     18     18      6     17      8
D34V6, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           7                            18
  CLUS_2                           5                            18
  CLUS_3                          11                            18
  CLUS_4                           0                             6
  CLUS_5                          12                            17
  CLUS_6                           6                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       12      3     12      8     18
  DEL PEAK 10(5Q12.1) WILD-TYPE     17     11     21     20     42
D34V7, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          12                            17
  CLUS_2                           3                            11
  CLUS_3                          12                            21
  CLUS_4                           8                            20
  CLUS_5                          18                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED       12     14      4      5     13      3
  DEL PEAK 10(5Q12.1) WILD-TYPE     15     22      8     14     19     15
                               vv
clus                            CLUS_7
  DEL PEAK 10(5Q12.1) MUTATED        2
  DEL PEAK 10(5Q12.1) WILD-TYPE     18
D34V8, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          12                            15
  CLUS_2                          14                            22
  CLUS_3                           4                             8
  CLUS_4                           5                            14
  CLUS_5                          13                            19
  CLUS_6                           3                            15
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED        7     15      8      2     15
  DEL PEAK 10(5Q12.1) WILD-TYPE     11     27      9      6     41
D34V9, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                          15                            27
  CLUS_3                           8                             9
  CLUS_4                           2                             6
  CLUS_5                          15                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       10     22     15
  DEL PEAK 10(5Q12.1) WILD-TYPE     12     41     41
D34V10, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          22                            41
  CLUS_3                          15                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED        8      5      4      7
  DEL PEAK 10(5Q12.1) WILD-TYPE      1      9     10      6
D34V11, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           8                             1
  CLUS_2                           5                             9
  CLUS_3                           4                            10
  CLUS_4                           7                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED        6      4      7      4      3
  DEL PEAK 10(5Q12.1) WILD-TYPE      3      9     11      1      2
D34V12, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                           4                             9
  CLUS_3                           7                            11
  CLUS_4                           4                             1
  CLUS_5                           3                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 11(5Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q22.2) MUTATED        5      7     10
  DEL PEAK 11(5Q22.2) WILD-TYPE     20     15     12
D35V1, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           5                            20
  CLUS_2                           7                            15
  CLUS_3                          10                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q22.2) MUTATED        0      4      3      8      3      0
  DEL PEAK 11(5Q22.2) WILD-TYPE      6      9     10      1      5      9
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 11(5Q22.2) MUTATED        4      0
  DEL PEAK 11(5Q22.2) WILD-TYPE      4      3
D35V2, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           4                             9
  CLUS_3                           3                            10
  CLUS_4                           8                             1
  CLUS_5                           3                             5
  CLUS_6                           0                             9
  CLUS_7                           4                             4
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q22.2) MUTATED       17     14     13     15
  DEL PEAK 11(5Q22.2) WILD-TYPE     49     18     18     21
D35V3, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          17                            49
  CLUS_2                          14                            18
  CLUS_3                          13                            18
  CLUS_4                          15                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q22.2) MUTATED       15     12     11
  DEL PEAK 11(5Q22.2) WILD-TYPE     13     27     18
D35V4, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          15                            13
  CLUS_2                          12                            27
  CLUS_3                          11                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q22.2) MUTATED       10     17     19
  DEL PEAK 11(5Q22.2) WILD-TYPE     23     23     34
D35V5, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          10                            23
  CLUS_2                          17                            23
  CLUS_3                          19                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q22.2) MUTATED        9      6     10      2     14      5
  DEL PEAK 11(5Q22.2) WILD-TYPE     16     17     19      4     15      9
D35V6, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           9                            16
  CLUS_2                           6                            17
  CLUS_3                          10                            19
  CLUS_4                           2                             4
  CLUS_5                          14                            15
  CLUS_6                           5                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED       10      3     15      9     22
  DEL PEAK 11(5Q22.2) WILD-TYPE     19     11     18     19     38
D35V7, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          10                            19
  CLUS_2                           3                            11
  CLUS_3                          15                            18
  CLUS_4                           9                            19
  CLUS_5                          22                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q22.2) MUTATED       12     13      6      5     15      5
  DEL PEAK 11(5Q22.2) WILD-TYPE     15     23      6     14     17     13
                               vv
clus                            CLUS_7
  DEL PEAK 11(5Q22.2) MUTATED        3
  DEL PEAK 11(5Q22.2) WILD-TYPE     17
D35V8, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          12                            15
  CLUS_2                          13                            23
  CLUS_3                           6                             6
  CLUS_4                           5                            14
  CLUS_5                          15                            17
  CLUS_6                           5                            13
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED        7     16      8      4     18
  DEL PEAK 11(5Q22.2) WILD-TYPE     11     26      9      4     38
D35V9, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                          16                            26
  CLUS_3                           8                             9
  CLUS_4                           4                             4
  CLUS_5                          18                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q22.2) MUTATED       11     25     17
  DEL PEAK 11(5Q22.2) WILD-TYPE     11     38     39
D35V10, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          11                            11
  CLUS_2                          25                            38
  CLUS_3                          17                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q22.2) MUTATED        7      4      4      9
  DEL PEAK 11(5Q22.2) WILD-TYPE      2     10     10      4
D35V11, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           7                             2
  CLUS_2                           4                            10
  CLUS_3                           4                            10
  CLUS_4                           9                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED        6      4      9      4      1
  DEL PEAK 11(5Q22.2) WILD-TYPE      3      9      9      1      4
D35V12, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                           4                             9
  CLUS_3                           9                             9
  CLUS_4                           4                             1
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 12(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P25.3) MUTATED        4      3      3
  DEL PEAK 12(6P25.3) WILD-TYPE     21     19     19
D36V1, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           4                            21
  CLUS_2                           3                            19
  CLUS_3                           3                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6P25.3) MUTATED        1      2      2      2      1      2
  DEL PEAK 12(6P25.3) WILD-TYPE      5     11     11      7      7      7
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 12(6P25.3) MUTATED        0      0
  DEL PEAK 12(6P25.3) WILD-TYPE      8      3
D36V2, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           2                            11
  CLUS_3                           2                            11
  CLUS_4                           2                             7
  CLUS_5                           1                             7
  CLUS_6                           2                             7
  CLUS_7                           0                             8
  CLUS_8                           0                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6P25.3) MUTATED       10      4      6      4
  DEL PEAK 12(6P25.3) WILD-TYPE     56     28     25     32
D36V3, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                          10                            56
  CLUS_2                           4                            28
  CLUS_3                           6                            25
  CLUS_4                           4                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P25.3) MUTATED        0      8      6
  DEL PEAK 12(6P25.3) WILD-TYPE     28     31     23
D36V4, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           0                            28
  CLUS_2                           8                            31
  CLUS_3                           6                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P25.3) MUTATED        5      4      9
  DEL PEAK 12(6P25.3) WILD-TYPE     28     36     44
D36V5, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                           4                            36
  CLUS_3                           9                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6P25.3) MUTATED        4      4      4      1      4      1
  DEL PEAK 12(6P25.3) WILD-TYPE     21     19     25      5     25     13
D36V6, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           4                            21
  CLUS_2                           4                            19
  CLUS_3                           4                            25
  CLUS_4                           1                             5
  CLUS_5                           4                            25
  CLUS_6                           1                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        4      3      5      3      9
  DEL PEAK 12(6P25.3) WILD-TYPE     25     11     28     25     51
D36V7, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           3                            11
  CLUS_3                           5                            28
  CLUS_4                           3                            25
  CLUS_5                           9                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6P25.3) MUTATED        6      5      2      1      4      4
  DEL PEAK 12(6P25.3) WILD-TYPE     21     31     10     18     28     14
                               vv
clus                            CLUS_7
  DEL PEAK 12(6P25.3) MUTATED        2
  DEL PEAK 12(6P25.3) WILD-TYPE     18
D36V8, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           6                            21
  CLUS_2                           5                            31
  CLUS_3                           2                            10
  CLUS_4                           1                            18
  CLUS_5                           4                            28
  CLUS_6                           4                            14
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        3      9      1      1      9
  DEL PEAK 12(6P25.3) WILD-TYPE     15     33     16      7     47
D36V9, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           3                            15
  CLUS_2                           9                            33
  CLUS_3                           1                            16
  CLUS_4                           1                             7
  CLUS_5                           9                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P25.3) MUTATED        3     12      8
  DEL PEAK 12(6P25.3) WILD-TYPE     19     51     48
D36V10, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                          12                            51
  CLUS_3                           8                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6P25.3) MUTATED        0      2      3      1
  DEL PEAK 12(6P25.3) WILD-TYPE      9     12     11     12
D36V11, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           2                            12
  CLUS_3                           3                            11
  CLUS_4                           1                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        2      1      3      0      0
  DEL PEAK 12(6P25.3) WILD-TYPE      7     12     15      5      5
D36V12, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           1                            12
  CLUS_3                           3                            15
  CLUS_4                           0                             5
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        4      9      5
  DEL PEAK 13(6Q26) WILD-TYPE     21     13     17
D37V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          21
  CLUS_2                         9                          13
  CLUS_3                         5                          17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED        1      6      2      2      2      3      2
  DEL PEAK 13(6Q26) WILD-TYPE      5      7     11      7      6      6      6
                             vv
clus                          CLUS_8
  DEL PEAK 13(6Q26) MUTATED        0
  DEL PEAK 13(6Q26) WILD-TYPE      3
D37V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         6                           7
  CLUS_3                         2                          11
  CLUS_4                         2                           7
  CLUS_5                         2                           6
  CLUS_6                         3                           6
  CLUS_7                         2                           6
  CLUS_8                         0                           3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       10      8      1     11
  DEL PEAK 13(6Q26) WILD-TYPE     56     24     30     25
D37V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        10                          56
  CLUS_2                         8                          24
  CLUS_3                         1                          30
  CLUS_4                        11                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        2      6      4
  DEL PEAK 13(6Q26) WILD-TYPE     26     33     25
D37V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          26
  CLUS_2                         6                          33
  CLUS_3                         4                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       10      4      9
  DEL PEAK 13(6Q26) WILD-TYPE     23     36     44
D37V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        10                          23
  CLUS_2                         4                          36
  CLUS_3                         9                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED        8      5      5      1      4      0
  DEL PEAK 13(6Q26) WILD-TYPE     17     18     24      5     25     14
D37V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         8                          17
  CLUS_2                         5                          18
  CLUS_3                         5                          24
  CLUS_4                         1                           5
  CLUS_5                         4                          25
  CLUS_6                         0                          14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        4      1      7      3     15
  DEL PEAK 13(6Q26) WILD-TYPE     25     13     26     25     45
D37V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          25
  CLUS_2                         1                          13
  CLUS_3                         7                          26
  CLUS_4                         3                          25
  CLUS_5                        15                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED        3      6      3      1      6      6      5
  DEL PEAK 13(6Q26) WILD-TYPE     24     30      9     18     26     12     15
D37V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         3                          24
  CLUS_2                         6                          30
  CLUS_3                         3                           9
  CLUS_4                         1                          18
  CLUS_5                         6                          26
  CLUS_6                         6                          12
  CLUS_7                         5                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        4      7      0      1     17
  DEL PEAK 13(6Q26) WILD-TYPE     14     35     17      7     39
D37V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          14
  CLUS_2                         7                          35
  CLUS_3                         0                          17
  CLUS_4                         1                           7
  CLUS_5                        17                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        4     10     15
  DEL PEAK 13(6Q26) WILD-TYPE     18     53     41
D37V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          18
  CLUS_2                        10                          53
  CLUS_3                        15                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        0      1      4      0
  DEL PEAK 13(6Q26) WILD-TYPE      9     13     10     13
D37V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         0                           9
  CLUS_2                         1                          13
  CLUS_3                         4                          10
  CLUS_4                         0                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        1      1      3      0      0
  DEL PEAK 13(6Q26) WILD-TYPE      8     12     15      5      5
D37V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         1                          12
  CLUS_3                         3                          15
  CLUS_4                         0                           5
  CLUS_5                         0                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 14(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.1) MUTATED        1      1      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     24     21     22
D38V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                            67 
                   TCGA-AF-2689                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-3400 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AG-3574 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3578 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3580                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3584                    TCGA-AG-3586 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3587                    TCGA-AG-3593 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3594                    TCGA-AG-3598 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3601 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3602                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3608                    TCGA-AG-3609 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3611                    TCGA-AG-3612 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3728                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3881                    TCGA-AG-3882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3883                    TCGA-AG-3885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3890 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3892                    TCGA-AG-3893 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3894                    TCGA-AG-3896 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3898                    TCGA-AG-3901 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3902                    TCGA-AG-3909 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4005                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A00C 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q31.1) MUTATED        0      0      1      0      0      1
  DEL PEAK 14(7Q31.1) WILD-TYPE      6     13     12      9      8      8
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 14(7Q31.1) MUTATED        0      0
  DEL PEAK 14(7Q31.1) WILD-TYPE      8      3
D38V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                            67 
                   TCGA-AF-2689                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-3400 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AG-3574 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3578 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3580                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3584                    TCGA-AG-3586 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3587                    TCGA-AG-3593 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3594                    TCGA-AG-3598 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3601 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3602                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3608                    TCGA-AG-3609 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3611                    TCGA-AG-3612 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3728                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3881                    TCGA-AG-3882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3883                    TCGA-AG-3885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3890 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3892                    TCGA-AG-3893 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3894                    TCGA-AG-3896 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3898                    TCGA-AG-3901 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3902                    TCGA-AG-3909 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4005                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A00C 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7Q31.1) MUTATED        1      0      0      3
  DEL PEAK 14(7Q31.1) WILD-TYPE     65     32     31     33
D38V3, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           1                            65
  CLUS_2                           0                            32
  CLUS_3                           0                            31
  CLUS_4                           3                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.1) MUTATED        0      1      1
  DEL PEAK 14(7Q31.1) WILD-TYPE     28     38     28
D38V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                            94 
                   TCGA-AF-2687                    TCGA-AF-2690 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2693                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-4110                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-A56K                    TCGA-AF-A56L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-A56N                    TCGA-AG-3592 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3725                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3732                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4021                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6621                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6464                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.1) MUTATED        1      1      2
  DEL PEAK 14(7Q31.1) WILD-TYPE     32     39     51
D38V5, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           1                            39
  CLUS_3                           2                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q31.1) MUTATED        1      0      2      0      1      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     24     23     27      6     28     14
D38V6, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           1                            24
  CLUS_2                           0                            23
  CLUS_3                           2                            27
  CLUS_4                           0                             6
  CLUS_5                           1                            28
  CLUS_6                           0                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        0      0      3      0      1
  DEL PEAK 14(7Q31.1) WILD-TYPE     29     14     30     28     59
D38V7, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           0                            29
  CLUS_2                           0                            14
  CLUS_3                           3                            30
  CLUS_4                           0                            28
  CLUS_5                           1                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q31.1) MUTATED        1      1      0      0      0      1
  DEL PEAK 14(7Q31.1) WILD-TYPE     26     35     12     19     32     17
                               vv
clus                            CLUS_7
  DEL PEAK 14(7Q31.1) MUTATED        1
  DEL PEAK 14(7Q31.1) WILD-TYPE     19
D38V8, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           1                            26
  CLUS_2                           1                            35
  CLUS_3                           0                            12
  CLUS_4                           0                            19
  CLUS_5                           0                            32
  CLUS_6                           1                            17
  CLUS_7                           1                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        0      2      0      0      2
  DEL PEAK 14(7Q31.1) WILD-TYPE     18     40     17      8     54
D38V9, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           0                            18
  CLUS_2                           2                            40
  CLUS_3                           0                            17
  CLUS_4                           0                             8
  CLUS_5                           2                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.1) MUTATED        0      2      2
  DEL PEAK 14(7Q31.1) WILD-TYPE     22     61     54
D38V10, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           0                            22
  CLUS_2                           2                            61
  CLUS_3                           2                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7Q31.1) MUTATED        0      0      1      0
  DEL PEAK 14(7Q31.1) WILD-TYPE      9     14     13     13
D38V11, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            1                            49 
                   TCGA-AF-2687                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-4110                    TCGA-AF-6655 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6672                    TCGA-AG-3725 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3732 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4021                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6621                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6464                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        1      0      0      0      0
  DEL PEAK 14(7Q31.1) WILD-TYPE      8     13     18      5      5
D38V12, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            1                            49 
                   TCGA-AF-2687                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-4110                    TCGA-AF-6655 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6672                    TCGA-AG-3725 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3732 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4021                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6621                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6464                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 

Clustering(39) Variable = DEL PEAK 15(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       13     14     18
  DEL PEAK 15(8P23.2) WILD-TYPE     12      8      4
D39V1, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          13                            12
  CLUS_2                          14                             8
  CLUS_3                          18                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED        3      8      9      8      7      2
  DEL PEAK 15(8P23.2) WILD-TYPE      3      5      4      1      1      7
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 15(8P23.2) MUTATED        6      2
  DEL PEAK 15(8P23.2) WILD-TYPE      2      1
D39V2, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           8                             5
  CLUS_3                           9                             4
  CLUS_4                           8                             1
  CLUS_5                           7                             1
  CLUS_6                           2                             7
  CLUS_7                           6                             2
  CLUS_8                           2                             1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED       28     21     20     31
  DEL PEAK 15(8P23.2) WILD-TYPE     38     11     11      5
D39V3, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          28                            38
  CLUS_2                          21                            11
  CLUS_3                          20                            11
  CLUS_4                          31                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       19     22     15
  DEL PEAK 15(8P23.2) WILD-TYPE      9     17     14
D39V4, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          19                             9
  CLUS_2                          22                            17
  CLUS_3                          15                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       21     25     33
  DEL PEAK 15(8P23.2) WILD-TYPE     12     15     20
D39V5, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          21                            12
  CLUS_2                          25                            15
  CLUS_3                          33                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       17     14     16      2     18     12
  DEL PEAK 15(8P23.2) WILD-TYPE      8      9     13      4     11      2
D39V6, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          17                             8
  CLUS_2                          14                             9
  CLUS_3                          16                            13
  CLUS_4                           2                             4
  CLUS_5                          18                            11
  CLUS_6                          12                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       20      8     11     17     43
  DEL PEAK 15(8P23.2) WILD-TYPE      9      6     22     11     17
D39V7, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          20                             9
  CLUS_2                           8                             6
  CLUS_3                          11                            22
  CLUS_4                          17                            11
  CLUS_5                          43                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       22     16      8      8     24      8
  DEL PEAK 15(8P23.2) WILD-TYPE      5     20      4     11      8     10
                               vv
clus                            CLUS_7
  DEL PEAK 15(8P23.2) MUTATED       13
  DEL PEAK 15(8P23.2) WILD-TYPE      7
D39V8, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          22                             5
  CLUS_2                          16                            20
  CLUS_3                           8                             4
  CLUS_4                           8                            11
  CLUS_5                          24                             8
  CLUS_6                           8                            10
  CLUS_7                          13                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       12     24      9      6     36
  DEL PEAK 15(8P23.2) WILD-TYPE      6     18      8      2     20
D39V9, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          12                             6
  CLUS_2                          24                            18
  CLUS_3                           9                             8
  CLUS_4                           6                             2
  CLUS_5                          36                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       16     35     36
  DEL PEAK 15(8P23.2) WILD-TYPE      6     28     20
D39V10, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          16                             6
  CLUS_2                          35                            28
  CLUS_3                          36                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED        4      8     10      6
  DEL PEAK 15(8P23.2) WILD-TYPE      5      6      4      7
D39V11, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           8                             6
  CLUS_3                          10                             4
  CLUS_4                           6                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED        5      9     10      3      1
  DEL PEAK 15(8P23.2) WILD-TYPE      4      4      8      2      4
D39V12, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           9                             4
  CLUS_3                          10                             8
  CLUS_4                           3                             2
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 16(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       11      7      8
  DEL PEAK 16(8P11.21) WILD-TYPE     14     15     14
D40V1, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           11                             14
  CLUS_2                            7                             15
  CLUS_3                            8                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED        3      4      6      5      2      1
  DEL PEAK 16(8P11.21) WILD-TYPE      3      9      7      4      6      8
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 16(8P11.21) MUTATED        3      2
  DEL PEAK 16(8P11.21) WILD-TYPE      5      1
D40V2, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            4                              9
  CLUS_3                            6                              7
  CLUS_4                            5                              4
  CLUS_5                            2                              6
  CLUS_6                            1                              8
  CLUS_7                            3                              5
  CLUS_8                            2                              1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED       23     12      7      3
  DEL PEAK 16(8P11.21) WILD-TYPE     43     20     24     33
D40V3, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           23                             43
  CLUS_2                           12                             20
  CLUS_3                            7                             24
  CLUS_4                            3                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED        9      6      5
  DEL PEAK 16(8P11.21) WILD-TYPE     19     33     24
D40V4, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            9                             19
  CLUS_2                            6                             33
  CLUS_3                            5                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED        7      7     20
  DEL PEAK 16(8P11.21) WILD-TYPE     26     33     33
D40V5, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            7                             26
  CLUS_2                            7                             33
  CLUS_3                           20                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED        6      4     12      1      6      5
  DEL PEAK 16(8P11.21) WILD-TYPE     19     19     17      5     23      9
D40V6, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                            4                             19
  CLUS_3                           12                             17
  CLUS_4                            1                              5
  CLUS_5                            6                             23
  CLUS_6                            5                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED        4      3      5      6     26
  DEL PEAK 16(8P11.21) WILD-TYPE     25     11     28     22     34
D40V7, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            4                             25
  CLUS_2                            3                             11
  CLUS_3                            5                             28
  CLUS_4                            6                             22
  CLUS_5                           26                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED        8      5      1      4     15      4
  DEL PEAK 16(8P11.21) WILD-TYPE     19     31     11     15     17     14
                                vv
clus                             CLUS_7
  DEL PEAK 16(8P11.21) MUTATED        7
  DEL PEAK 16(8P11.21) WILD-TYPE     13
D40V8, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                            5                             31
  CLUS_3                            1                             11
  CLUS_4                            4                             15
  CLUS_5                           15                             17
  CLUS_6                            4                             14
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED        2      8      3      3     22
  DEL PEAK 16(8P11.21) WILD-TYPE     16     34     14      5     34
D40V9, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            8                             34
  CLUS_3                            3                             14
  CLUS_4                            3                              5
  CLUS_5                           22                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED        8      9     21
  DEL PEAK 16(8P11.21) WILD-TYPE     14     54     35
D40V10, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            8                             14
  CLUS_2                            9                             54
  CLUS_3                           21                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED        1      3      5      1
  DEL PEAK 16(8P11.21) WILD-TYPE      8     11      9     12
D40V11, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                             11
  CLUS_3                            5                              9
  CLUS_4                            1                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED        3      2      4      1      0
  DEL PEAK 16(8P11.21) WILD-TYPE      6     11     14      4      5
D40V12, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            2                             11
  CLUS_3                            4                             14
  CLUS_4                            1                              4
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 17(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED       10      7      4
  DEL PEAK 17(10Q21.1) WILD-TYPE     15     15     18
D41V1, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           10                             15
  CLUS_2                            7                             15
  CLUS_3                            4                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q21.1) MUTATED        1      4      6      2      4      2
  DEL PEAK 17(10Q21.1) WILD-TYPE      5      9      7      7      4      7
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 17(10Q21.1) MUTATED        2      0
  DEL PEAK 17(10Q21.1) WILD-TYPE      6      3
D41V2, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                              9
  CLUS_3                            6                              7
  CLUS_4                            2                              7
  CLUS_5                            4                              4
  CLUS_6                            2                              7
  CLUS_7                            2                              6
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED       12      8      8     13
  DEL PEAK 17(10Q21.1) WILD-TYPE     54     24     23     23
D41V3, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                            8                             24
  CLUS_3                            8                             23
  CLUS_4                           13                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED        8      7      5
  DEL PEAK 17(10Q21.1) WILD-TYPE     20     32     24
D41V4, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            8                             20
  CLUS_2                            7                             32
  CLUS_3                            5                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED        5      5     19
  DEL PEAK 17(10Q21.1) WILD-TYPE     28     35     34
D41V5, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                            5                             35
  CLUS_3                           19                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q21.1) MUTATED        4      4     11      3      3      4
  DEL PEAK 17(10Q21.1) WILD-TYPE     21     19     18      3     26     10
D41V6, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            4                             21
  CLUS_2                            4                             19
  CLUS_3                           11                             18
  CLUS_4                            3                              3
  CLUS_5                            3                             26
  CLUS_6                            4                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED        5      2     12      5     17
  DEL PEAK 17(10Q21.1) WILD-TYPE     24     12     21     23     43
D41V7, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            2                             12
  CLUS_3                           12                             21
  CLUS_4                            5                             23
  CLUS_5                           17                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q21.1) MUTATED        8      7      1      4     11      6
  DEL PEAK 17(10Q21.1) WILD-TYPE     19     29     11     15     21     12
                                vv
clus                             CLUS_7
  DEL PEAK 17(10Q21.1) MUTATED        4
  DEL PEAK 17(10Q21.1) WILD-TYPE     16
D41V8, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                            7                             29
  CLUS_3                            1                             11
  CLUS_4                            4                             15
  CLUS_5                           11                             21
  CLUS_6                            6                             12
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED        4     11      3      3     15
  DEL PEAK 17(10Q21.1) WILD-TYPE     14     31     14      5     41
D41V9, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                           11                             31
  CLUS_3                            3                             14
  CLUS_4                            3                              5
  CLUS_5                           15                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED        9     13     14
  DEL PEAK 17(10Q21.1) WILD-TYPE     13     50     42
D41V10, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                           13                             50
  CLUS_3                           14                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED        2      3      4      2
  DEL PEAK 17(10Q21.1) WILD-TYPE      7     11     10     11
D41V11, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                             11
  CLUS_3                            4                             10
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED        4      3      2      1      1
  DEL PEAK 17(10Q21.1) WILD-TYPE      5     10     16      4      4
D41V12, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            3                             10
  CLUS_3                            2                             16
  CLUS_4                            1                              4
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 18(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q25.2) MUTATED        9      6      6
  DEL PEAK 18(10Q25.2) WILD-TYPE     16     16     16
D42V1, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            9                             16
  CLUS_2                            6                             16
  CLUS_3                            6                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q25.2) MUTATED        2      5      4      2      4      3
  DEL PEAK 18(10Q25.2) WILD-TYPE      4      8      9      7      4      6
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 18(10Q25.2) MUTATED        1      0
  DEL PEAK 18(10Q25.2) WILD-TYPE      7      3
D42V2, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            5                              8
  CLUS_3                            4                              9
  CLUS_4                            2                              7
  CLUS_5                            4                              4
  CLUS_6                            3                              6
  CLUS_7                            1                              7
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q25.2) MUTATED       17      9      9     13
  DEL PEAK 18(10Q25.2) WILD-TYPE     49     23     22     23
D42V3, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                           17                             49
  CLUS_2                            9                             23
  CLUS_3                            9                             22
  CLUS_4                           13                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q25.2) MUTATED       10      9      8
  DEL PEAK 18(10Q25.2) WILD-TYPE     18     30     21
D42V4, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                           10                             18
  CLUS_2                            9                             30
  CLUS_3                            8                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q25.2) MUTATED       11      9     18
  DEL PEAK 18(10Q25.2) WILD-TYPE     22     31     35
D42V5, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                           11                             22
  CLUS_2                            9                             31
  CLUS_3                           18                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q25.2) MUTATED        7      8      7      4      6      6
  DEL PEAK 18(10Q25.2) WILD-TYPE     18     15     22      2     23      8
D42V6, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                            8                             15
  CLUS_3                            7                             22
  CLUS_4                            4                              2
  CLUS_5                            6                             23
  CLUS_6                            6                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED        9      1     14      6     17
  DEL PEAK 18(10Q25.2) WILD-TYPE     20     13     19     22     43
D42V7, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            1                             13
  CLUS_3                           14                             19
  CLUS_4                            6                             22
  CLUS_5                           17                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q25.2) MUTATED       14      6      2      3      8      8
  DEL PEAK 18(10Q25.2) WILD-TYPE     13     30     10     16     24     10
                                vv
clus                             CLUS_7
  DEL PEAK 18(10Q25.2) MUTATED        6
  DEL PEAK 18(10Q25.2) WILD-TYPE     14
D42V8, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                           14                             13
  CLUS_2                            6                             30
  CLUS_3                            2                             10
  CLUS_4                            3                             16
  CLUS_5                            8                             24
  CLUS_6                            8                             10
  CLUS_7                            6                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED        7     11      3      2     19
  DEL PEAK 18(10Q25.2) WILD-TYPE     11     31     14      6     37
D42V9, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                           11                             31
  CLUS_3                            3                             14
  CLUS_4                            2                              6
  CLUS_5                           19                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q25.2) MUTATED        9     15     18
  DEL PEAK 18(10Q25.2) WILD-TYPE     13     48     38
D42V10, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                           15                             48
  CLUS_3                           18                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q25.2) MUTATED        2      6      5      2
  DEL PEAK 18(10Q25.2) WILD-TYPE      7      8      9     11
D42V11, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            6                              8
  CLUS_3                            5                              9
  CLUS_4                            2                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED        5      4      3      1      2
  DEL PEAK 18(10Q25.2) WILD-TYPE      4      9     15      4      3
D42V12, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            4                              9
  CLUS_3                            3                             15
  CLUS_4                            1                              4
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 19(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q22.3) MUTATED        6      8      1
  DEL PEAK 19(11Q22.3) WILD-TYPE     19     14     21
D43V1, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                            8                             14
  CLUS_3                            1                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q22.3) MUTATED        0      7      4      0      2      2
  DEL PEAK 19(11Q22.3) WILD-TYPE      6      6      9      9      6      7
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 19(11Q22.3) MUTATED        0      0
  DEL PEAK 19(11Q22.3) WILD-TYPE      8      3
D43V2, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            7                              6
  CLUS_3                            4                              9
  CLUS_4                            0                              9
  CLUS_5                            2                              6
  CLUS_6                            2                              7
  CLUS_7                            0                              8
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q22.3) MUTATED       14      9      1     14
  DEL PEAK 19(11Q22.3) WILD-TYPE     52     23     30     22
D43V3, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                           14                             52
  CLUS_2                            9                             23
  CLUS_3                            1                             30
  CLUS_4                           14                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q22.3) MUTATED        2     11     10
  DEL PEAK 19(11Q22.3) WILD-TYPE     26     28     19
D43V4, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            2                             26
  CLUS_2                           11                             28
  CLUS_3                           10                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q22.3) MUTATED        6      9     14
  DEL PEAK 19(11Q22.3) WILD-TYPE     27     31     39
D43V5, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            9                             31
  CLUS_3                           14                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q22.3) MUTATED        5      4      7      4      8      1
  DEL PEAK 19(11Q22.3) WILD-TYPE     20     19     22      2     21     13
D43V6, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            5                             20
  CLUS_2                            4                             19
  CLUS_3                            7                             22
  CLUS_4                            4                              2
  CLUS_5                            8                             21
  CLUS_6                            1                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        5      6     12      1     14
  DEL PEAK 19(11Q22.3) WILD-TYPE     24      8     21     27     46
D43V7, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            6                              8
  CLUS_3                           12                             21
  CLUS_4                            1                             27
  CLUS_5                           14                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q22.3) MUTATED        1     13      5      2      6      7
  DEL PEAK 19(11Q22.3) WILD-TYPE     26     23      7     17     26     11
                                vv
clus                             CLUS_7
  DEL PEAK 19(11Q22.3) MUTATED        4
  DEL PEAK 19(11Q22.3) WILD-TYPE     16
D43V8, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                           13                             23
  CLUS_3                            5                              7
  CLUS_4                            2                             17
  CLUS_5                            6                             26
  CLUS_6                            7                             11
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        3     13      2      3     15
  DEL PEAK 19(11Q22.3) WILD-TYPE     15     29     15      5     41
D43V9, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                           13                             29
  CLUS_3                            2                             15
  CLUS_4                            3                              5
  CLUS_5                           15                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q22.3) MUTATED        5     16     15
  DEL PEAK 19(11Q22.3) WILD-TYPE     17     47     41
D43V10, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                           16                             47
  CLUS_3                           15                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q22.3) MUTATED        1      1      2      4
  DEL PEAK 19(11Q22.3) WILD-TYPE      8     13     12      9
D43V11, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                             13
  CLUS_3                            2                             12
  CLUS_4                            4                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        0      2      4      1      1
  DEL PEAK 19(11Q22.3) WILD-TYPE      9     11     14      4      4
D43V12, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            2                             11
  CLUS_3                            4                             14
  CLUS_4                            1                              4
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 20(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12P13.1) MUTATED        4      3      4
  DEL PEAK 20(12P13.1) WILD-TYPE     21     19     18
D44V1, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            4                             21
  CLUS_2                            3                             19
  CLUS_3                            4                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12P13.1) MUTATED        2      1      2      4      1      1
  DEL PEAK 20(12P13.1) WILD-TYPE      4     12     11      5      7      8
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 20(12P13.1) MUTATED        0      0
  DEL PEAK 20(12P13.1) WILD-TYPE      8      3
D44V2, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                             12
  CLUS_3                            2                             11
  CLUS_4                            4                              5
  CLUS_5                            1                              7
  CLUS_6                            1                              8
  CLUS_7                            0                              8
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12P13.1) MUTATED       10      8      7      8
  DEL PEAK 20(12P13.1) WILD-TYPE     56     24     24     28
D44V3, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                           10                             56
  CLUS_2                            8                             24
  CLUS_3                            7                             24
  CLUS_4                            8                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12P13.1) MUTATED        4      9     10
  DEL PEAK 20(12P13.1) WILD-TYPE     24     30     19
D44V4, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            4                             24
  CLUS_2                            9                             30
  CLUS_3                           10                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12P13.1) MUTATED        6      7     14
  DEL PEAK 20(12P13.1) WILD-TYPE     27     33     39
D44V5, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            7                             33
  CLUS_3                           14                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12P13.1) MUTATED        6      2      7      3      5      4
  DEL PEAK 20(12P13.1) WILD-TYPE     19     21     22      3     24     10
D44V6, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                            2                             21
  CLUS_3                            7                             22
  CLUS_4                            3                              3
  CLUS_5                            5                             24
  CLUS_6                            4                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12P13.1) MUTATED        6      4      8      3     12
  DEL PEAK 20(12P13.1) WILD-TYPE     23     10     25     25     48
D44V7, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            4                             10
  CLUS_3                            8                             25
  CLUS_4                            3                             25
  CLUS_5                           12                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12P13.1) MUTATED        4     11      3      4      9      1
  DEL PEAK 20(12P13.1) WILD-TYPE     23     25      9     15     23     17
                                vv
clus                             CLUS_7
  DEL PEAK 20(12P13.1) MUTATED        1
  DEL PEAK 20(12P13.1) WILD-TYPE     19
D44V8, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            4                             23
  CLUS_2                           11                             25
  CLUS_3                            3                              9
  CLUS_4                            4                             15
  CLUS_5                            9                             23
  CLUS_6                            1                             17
  CLUS_7                            1                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12P13.1) MUTATED        5     13      4      0     10
  DEL PEAK 20(12P13.1) WILD-TYPE     13     29     13      8     46
D44V9, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                           13                             29
  CLUS_3                            4                             13
  CLUS_4                            0                              8
  CLUS_5                           10                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12P13.1) MUTATED        6     16     10
  DEL PEAK 20(12P13.1) WILD-TYPE     16     47     46
D44V10, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                           16                             47
  CLUS_3                           10                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12P13.1) MUTATED        3      5      3      3
  DEL PEAK 20(12P13.1) WILD-TYPE      6      9     11     10
D44V11, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            5                              9
  CLUS_3                            3                             11
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12P13.1) MUTATED        4      3      5      1      1
  DEL PEAK 20(12P13.1) WILD-TYPE      5     10     13      4      4
D44V12, multiclass
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            3                             10
  CLUS_3                            5                             13
  CLUS_4                            1                              4
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 21(12Q22) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12Q22) MUTATED        2      4      5
  DEL PEAK 21(12Q22) WILD-TYPE     23     18     17
D45V1, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          2                           23
  CLUS_2                          4                           18
  CLUS_3                          5                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 21(12Q22) MUTATED        2      2      1      3      2      1      0
  DEL PEAK 21(12Q22) WILD-TYPE      4     11     12      6      6      8      8
                              vv
clus                           CLUS_8
  DEL PEAK 21(12Q22) MUTATED        0
  DEL PEAK 21(12Q22) WILD-TYPE      3
D45V2, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          2                            4
  CLUS_2                          2                           11
  CLUS_3                          1                           12
  CLUS_4                          3                            6
  CLUS_5                          2                            6
  CLUS_6                          1                            8
  CLUS_7                          0                            8
  CLUS_8                          0                            3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12Q22) MUTATED        5      9      4      8
  DEL PEAK 21(12Q22) WILD-TYPE     61     23     27     28
D45V3, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          5                           61
  CLUS_2                          9                           23
  CLUS_3                          4                           27
  CLUS_4                          8                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12Q22) MUTATED        3      7      5
  DEL PEAK 21(12Q22) WILD-TYPE     25     32     24
D45V4, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          3                           25
  CLUS_2                          7                           32
  CLUS_3                          5                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12Q22) MUTATED        6      5      9
  DEL PEAK 21(12Q22) WILD-TYPE     27     35     44
D45V5, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          6                           27
  CLUS_2                          5                           35
  CLUS_3                          9                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(12Q22) MUTATED        4      3      3      2      4      4
  DEL PEAK 21(12Q22) WILD-TYPE     21     20     26      4     25     10
D45V6, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          4                           21
  CLUS_2                          3                           20
  CLUS_3                          3                           26
  CLUS_4                          2                            4
  CLUS_5                          4                           25
  CLUS_6                          4                           10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12Q22) MUTATED        5      3      5      2     11
  DEL PEAK 21(12Q22) WILD-TYPE     24     11     28     26     49
D45V7, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          5                           24
  CLUS_2                          3                           11
  CLUS_3                          5                           28
  CLUS_4                          2                           26
  CLUS_5                         11                           49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 21(12Q22) MUTATED        5      7      2      2      7      1      2
  DEL PEAK 21(12Q22) WILD-TYPE     22     29     10     17     25     17     18
D45V8, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          5                           22
  CLUS_2                          7                           29
  CLUS_3                          2                           10
  CLUS_4                          2                           17
  CLUS_5                          7                           25
  CLUS_6                          1                           17
  CLUS_7                          2                           18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12Q22) MUTATED        5      7      1      1      8
  DEL PEAK 21(12Q22) WILD-TYPE     13     35     16      7     48
D45V9, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          5                           13
  CLUS_2                          7                           35
  CLUS_3                          1                           16
  CLUS_4                          1                            7
  CLUS_5                          8                           48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12Q22) MUTATED        4     11      7
  DEL PEAK 21(12Q22) WILD-TYPE     18     52     49
D45V10, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          4                           18
  CLUS_2                         11                           52
  CLUS_3                          7                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12Q22) MUTATED        1      5      2      2
  DEL PEAK 21(12Q22) WILD-TYPE      8      9     12     11
D45V11, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          1                            8
  CLUS_2                          5                            9
  CLUS_3                          2                           12
  CLUS_4                          2                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12Q22) MUTATED        1      5      2      1      1
  DEL PEAK 21(12Q22) WILD-TYPE      8      8     16      4      4
D45V12, multiclass
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  CLUS_1                          1                            8
  CLUS_2                          5                            8
  CLUS_3                          2                           16
  CLUS_4                          1                            4
  CLUS_5                          1                            4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 22(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q11.2) MUTATED       10      7     11
  DEL PEAK 22(14Q11.2) WILD-TYPE     15     15     11
D46V1, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                           10                             15
  CLUS_2                            7                             15
  CLUS_3                           11                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q11.2) MUTATED        3      2      5      7      3      4
  DEL PEAK 22(14Q11.2) WILD-TYPE      3     11      8      2      5      5
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(14Q11.2) MUTATED        4      0
  DEL PEAK 22(14Q11.2) WILD-TYPE      4      3
D46V2, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            2                             11
  CLUS_3                            5                              8
  CLUS_4                            7                              2
  CLUS_5                            3                              5
  CLUS_6                            4                              5
  CLUS_7                            4                              4
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q11.2) MUTATED       19     22     18     11
  DEL PEAK 22(14Q11.2) WILD-TYPE     47     10     13     25
D46V3, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                           19                             47
  CLUS_2                           22                             10
  CLUS_3                           18                             13
  CLUS_4                           11                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q11.2) MUTATED       13     18     12
  DEL PEAK 22(14Q11.2) WILD-TYPE     15     21     17
D46V4, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                           13                             15
  CLUS_2                           18                             21
  CLUS_3                           12                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q11.2) MUTATED       15     15     24
  DEL PEAK 22(14Q11.2) WILD-TYPE     18     25     29
D46V5, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                           15                             18
  CLUS_2                           15                             25
  CLUS_3                           24                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q11.2) MUTATED       12      7     12      3     12      8
  DEL PEAK 22(14Q11.2) WILD-TYPE     13     16     17      3     17      6
D46V6, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                           12                             13
  CLUS_2                            7                             16
  CLUS_3                           12                             17
  CLUS_4                            3                              3
  CLUS_5                           12                             17
  CLUS_6                            8                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q11.2) MUTATED        9      7     12     15     26
  DEL PEAK 22(14Q11.2) WILD-TYPE     20      7     21     13     34
D46V7, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            7                              7
  CLUS_3                           12                             21
  CLUS_4                           15                             13
  CLUS_5                           26                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q11.2) MUTATED       12     15      3     12     16      3
  DEL PEAK 22(14Q11.2) WILD-TYPE     15     21      9      7     16     15
                                vv
clus                             CLUS_7
  DEL PEAK 22(14Q11.2) MUTATED        8
  DEL PEAK 22(14Q11.2) WILD-TYPE     12
D46V8, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                           12                             15
  CLUS_2                           15                             21
  CLUS_3                            3                              9
  CLUS_4                           12                              7
  CLUS_5                           16                             16
  CLUS_6                            3                             15
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q11.2) MUTATED        5     25      7      2     22
  DEL PEAK 22(14Q11.2) WILD-TYPE     13     17     10      6     34
D46V9, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                           25                             17
  CLUS_3                            7                             10
  CLUS_4                            2                              6
  CLUS_5                           22                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q11.2) MUTATED       11     30     20
  DEL PEAK 22(14Q11.2) WILD-TYPE     11     33     36
D46V10, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                           11                             11
  CLUS_2                           30                             33
  CLUS_3                           20                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q11.2) MUTATED        5      6      9      7
  DEL PEAK 22(14Q11.2) WILD-TYPE      4      8      5      6
D46V11, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            6                              8
  CLUS_3                            9                              5
  CLUS_4                            7                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q11.2) MUTATED        5      6     10      4      2
  DEL PEAK 22(14Q11.2) WILD-TYPE      4      7      8      1      3
D46V12, multiclass
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            6                              7
  CLUS_3                           10                              8
  CLUS_4                            4                              1
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 23(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q31.1) MUTATED       10      7     11
  DEL PEAK 23(14Q31.1) WILD-TYPE     15     15     11
D47V1, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                           10                             15
  CLUS_2                            7                             15
  CLUS_3                           11                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(14Q31.1) MUTATED        2      3      6      7      3      3
  DEL PEAK 23(14Q31.1) WILD-TYPE      4     10      7      2      5      6
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 23(14Q31.1) MUTATED        4      0
  DEL PEAK 23(14Q31.1) WILD-TYPE      4      3
D47V2, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            3                             10
  CLUS_3                            6                              7
  CLUS_4                            7                              2
  CLUS_5                            3                              5
  CLUS_6                            3                              6
  CLUS_7                            4                              4
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q31.1) MUTATED       23     19     17     13
  DEL PEAK 23(14Q31.1) WILD-TYPE     43     13     14     23
D47V3, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                           23                             43
  CLUS_2                           19                             13
  CLUS_3                           17                             14
  CLUS_4                           13                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q31.1) MUTATED       13     19     13
  DEL PEAK 23(14Q31.1) WILD-TYPE     15     20     16
D47V4, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                           13                             15
  CLUS_2                           19                             20
  CLUS_3                           13                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q31.1) MUTATED       17     17     23
  DEL PEAK 23(14Q31.1) WILD-TYPE     16     23     30
D47V5, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                           17                             16
  CLUS_2                           17                             23
  CLUS_3                           23                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(14Q31.1) MUTATED       14      7     12      1     14      9
  DEL PEAK 23(14Q31.1) WILD-TYPE     11     16     17      5     15      5
D47V6, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                           14                             11
  CLUS_2                            7                             16
  CLUS_3                           12                             17
  CLUS_4                            1                              5
  CLUS_5                           14                             15
  CLUS_6                            9                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q31.1) MUTATED       11      4     12     17     27
  DEL PEAK 23(14Q31.1) WILD-TYPE     18     10     21     11     33
D47V7, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            4                             10
  CLUS_3                           12                             21
  CLUS_4                           17                             11
  CLUS_5                           27                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(14Q31.1) MUTATED       14     14      3     12     17      4
  DEL PEAK 23(14Q31.1) WILD-TYPE     13     22      9      7     15     14
                                vv
clus                             CLUS_7
  DEL PEAK 23(14Q31.1) MUTATED        7
  DEL PEAK 23(14Q31.1) WILD-TYPE     13
D47V8, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                           14                             13
  CLUS_2                           14                             22
  CLUS_3                            3                              9
  CLUS_4                           12                              7
  CLUS_5                           17                             15
  CLUS_6                            4                             14
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q31.1) MUTATED        6     25      6      3     22
  DEL PEAK 23(14Q31.1) WILD-TYPE     12     17     11      5     34
D47V9, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                           25                             17
  CLUS_3                            6                             11
  CLUS_4                            3                              5
  CLUS_5                           22                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q31.1) MUTATED       12     30     20
  DEL PEAK 23(14Q31.1) WILD-TYPE     10     33     36
D47V10, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                           12                             10
  CLUS_2                           30                             33
  CLUS_3                           20                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q31.1) MUTATED        6      6     10      6
  DEL PEAK 23(14Q31.1) WILD-TYPE      3      8      4      7
D47V11, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            6                              8
  CLUS_3                           10                              4
  CLUS_4                            6                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q31.1) MUTATED        6      6     10      4      2
  DEL PEAK 23(14Q31.1) WILD-TYPE      3      7      8      1      3
D47V12, multiclass
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            6                              7
  CLUS_3                           10                              8
  CLUS_4                            4                              1
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 24(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(15Q21.1) MUTATED       11     10     13
  DEL PEAK 24(15Q21.1) WILD-TYPE     14     12      9
D48V1, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           11                             14
  CLUS_2                           10                             12
  CLUS_3                           13                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(15Q21.1) MUTATED        1      6      7      5      7      3
  DEL PEAK 24(15Q21.1) WILD-TYPE      5      7      6      4      1      6
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 24(15Q21.1) MUTATED        5      0
  DEL PEAK 24(15Q21.1) WILD-TYPE      3      3
D48V2, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            6                              7
  CLUS_3                            7                              6
  CLUS_4                            5                              4
  CLUS_5                            7                              1
  CLUS_6                            3                              6
  CLUS_7                            5                              3
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(15Q21.1) MUTATED       19     21     18     21
  DEL PEAK 24(15Q21.1) WILD-TYPE     47     11     13     15
D48V3, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           19                             47
  CLUS_2                           21                             11
  CLUS_3                           18                             13
  CLUS_4                           21                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(15Q21.1) MUTATED       14     17     15
  DEL PEAK 24(15Q21.1) WILD-TYPE     14     22     14
D48V4, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           14                             14
  CLUS_2                           17                             22
  CLUS_3                           15                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(15Q21.1) MUTATED       10     17     31
  DEL PEAK 24(15Q21.1) WILD-TYPE     23     23     22
D48V5, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           17                             23
  CLUS_3                           31                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(15Q21.1) MUTATED       10      8     15      2     13     10
  DEL PEAK 24(15Q21.1) WILD-TYPE     15     15     14      4     16      4
D48V6, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           10                             15
  CLUS_2                            8                             15
  CLUS_3                           15                             14
  CLUS_4                            2                              4
  CLUS_5                           13                             16
  CLUS_6                           10                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q21.1) MUTATED       12      5     16     16     30
  DEL PEAK 24(15Q21.1) WILD-TYPE     17      9     17     12     30
D48V7, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            5                              9
  CLUS_3                           16                             17
  CLUS_4                           16                             12
  CLUS_5                           30                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(15Q21.1) MUTATED       17     15      4     10     16      6
  DEL PEAK 24(15Q21.1) WILD-TYPE     10     21      8      9     16     12
                                vv
clus                             CLUS_7
  DEL PEAK 24(15Q21.1) MUTATED       11
  DEL PEAK 24(15Q21.1) WILD-TYPE      9
D48V8, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           17                             10
  CLUS_2                           15                             21
  CLUS_3                            4                              8
  CLUS_4                           10                              9
  CLUS_5                           16                             16
  CLUS_6                            6                             12
  CLUS_7                           11                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q21.1) MUTATED       10     22      7      3     25
  DEL PEAK 24(15Q21.1) WILD-TYPE      8     20     10      5     31
D48V9, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           10                              8
  CLUS_2                           22                             20
  CLUS_3                            7                             10
  CLUS_4                            3                              5
  CLUS_5                           25                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(15Q21.1) MUTATED       13     30     24
  DEL PEAK 24(15Q21.1) WILD-TYPE      9     33     32
D48V10, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                           13                              9
  CLUS_2                           30                             33
  CLUS_3                           24                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(15Q21.1) MUTATED        4      6     10      8
  DEL PEAK 24(15Q21.1) WILD-TYPE      5      8      4      5
D48V11, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            6                              8
  CLUS_3                           10                              4
  CLUS_4                            8                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q21.1) MUTATED        5      8     11      3      1
  DEL PEAK 24(15Q21.1) WILD-TYPE      4      5      7      2      4
D48V12, multiclass
        clus
vv       DEL PEAK 24(15Q21.1) MUTATED DEL PEAK 24(15Q21.1) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            8                              5
  CLUS_3                           11                              7
  CLUS_4                            3                              2
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 25(15Q22.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q22.33) MUTATED       10     11     12
  DEL PEAK 25(15Q22.33) WILD-TYPE     15     11     10
D49V1, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                            10                              15
  CLUS_2                            11                              11
  CLUS_3                            12                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(15Q22.33) MUTATED        1      6      6      4      7      4
  DEL PEAK 25(15Q22.33) WILD-TYPE      5      7      7      5      1      5
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 25(15Q22.33) MUTATED        5      0
  DEL PEAK 25(15Q22.33) WILD-TYPE      3      3
D49V2, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             6                               7
  CLUS_3                             6                               7
  CLUS_4                             4                               5
  CLUS_5                             7                               1
  CLUS_6                             4                               5
  CLUS_7                             5                               3
  CLUS_8                             0                               3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q22.33) MUTATED       17     22     17     21
  DEL PEAK 25(15Q22.33) WILD-TYPE     49     10     14     15
D49V3, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                            17                              49
  CLUS_2                            22                              10
  CLUS_3                            17                              14
  CLUS_4                            21                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q22.33) MUTATED       15     16     13
  DEL PEAK 25(15Q22.33) WILD-TYPE     13     23     16
D49V4, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                            15                              13
  CLUS_2                            16                              23
  CLUS_3                            13                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q22.33) MUTATED       11     19     29
  DEL PEAK 25(15Q22.33) WILD-TYPE     22     21     24
D49V5, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                            11                              22
  CLUS_2                            19                              21
  CLUS_3                            29                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(15Q22.33) MUTATED        9      9     13      3     13     12
  DEL PEAK 25(15Q22.33) WILD-TYPE     16     14     16      3     16      2
D49V6, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                             9                              16
  CLUS_2                             9                              14
  CLUS_3                            13                              16
  CLUS_4                             3                               3
  CLUS_5                            13                              16
  CLUS_6                            12                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q22.33) MUTATED       15      3     15     14     30
  DEL PEAK 25(15Q22.33) WILD-TYPE     14     11     18     14     30
D49V7, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                            15                              14
  CLUS_2                             3                              11
  CLUS_3                            15                              18
  CLUS_4                            14                              14
  CLUS_5                            30                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(15Q22.33) MUTATED       19     13      4      8     14      7
  DEL PEAK 25(15Q22.33) WILD-TYPE      8     23      8     11     18     11
                                 vv
clus                              CLUS_7
  DEL PEAK 25(15Q22.33) MUTATED       12
  DEL PEAK 25(15Q22.33) WILD-TYPE      8
D49V8, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                            19                               8
  CLUS_2                            13                              23
  CLUS_3                             4                               8
  CLUS_4                             8                              11
  CLUS_5                            14                              18
  CLUS_6                             7                              11
  CLUS_7                            12                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q22.33) MUTATED       11     21      6      2     26
  DEL PEAK 25(15Q22.33) WILD-TYPE      7     21     11      6     30
D49V9, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                            11                               7
  CLUS_2                            21                              21
  CLUS_3                             6                              11
  CLUS_4                             2                               6
  CLUS_5                            26                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q22.33) MUTATED       12     29     25
  DEL PEAK 25(15Q22.33) WILD-TYPE     10     34     31
D49V10, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                            12                              10
  CLUS_2                            29                              34
  CLUS_3                            25                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q22.33) MUTATED        4      7      9      7
  DEL PEAK 25(15Q22.33) WILD-TYPE      5      7      5      6
D49V11, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                             7                               7
  CLUS_3                             9                               5
  CLUS_4                             7                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q22.33) MUTATED        4      8     11      3      1
  DEL PEAK 25(15Q22.33) WILD-TYPE      5      5      7      2      4
D49V12, multiclass
        clus
vv       DEL PEAK 25(15Q22.33) MUTATED DEL PEAK 25(15Q22.33) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                             8                               5
  CLUS_3                            11                               7
  CLUS_4                             3                               2
  CLUS_5                             1                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 26(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16P13.3) MUTATED        2      3      2
  DEL PEAK 26(16P13.3) WILD-TYPE     23     19     20
D50V1, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            3                             19
  CLUS_3                            2                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16P13.3) MUTATED        1      1      0      1      1      1
  DEL PEAK 26(16P13.3) WILD-TYPE      5     12     13      8      7      8
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 26(16P13.3) MUTATED        2      0
  DEL PEAK 26(16P13.3) WILD-TYPE      6      3
D50V2, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            1                             12
  CLUS_3                            0                             13
  CLUS_4                            1                              8
  CLUS_5                            1                              7
  CLUS_6                            1                              8
  CLUS_7                            2                              6
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16P13.3) MUTATED        3      4      1      5
  DEL PEAK 26(16P13.3) WILD-TYPE     63     28     30     31
D50V3, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            3                             63
  CLUS_2                            4                             28
  CLUS_3                            1                             30
  CLUS_4                            5                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16P13.3) MUTATED        0      1      5
  DEL PEAK 26(16P13.3) WILD-TYPE     28     38     24
D50V4, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            0                             28
  CLUS_2                            1                             38
  CLUS_3                            5                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16P13.3) MUTATED        4      3      4
  DEL PEAK 26(16P13.3) WILD-TYPE     29     37     49
D50V5, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            4                             29
  CLUS_2                            3                             37
  CLUS_3                            4                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16P13.3) MUTATED        2      1      3      1      4      0
  DEL PEAK 26(16P13.3) WILD-TYPE     23     22     26      5     25     14
D50V6, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            1                             22
  CLUS_3                            3                             26
  CLUS_4                            1                              5
  CLUS_5                            4                             25
  CLUS_6                            0                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16P13.3) MUTATED        1      0      6      1      5
  DEL PEAK 26(16P13.3) WILD-TYPE     28     14     27     27     55
D50V7, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                            0                             14
  CLUS_3                            6                             27
  CLUS_4                            1                             27
  CLUS_5                            5                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16P13.3) MUTATED        1      3      1      1      3      2
  DEL PEAK 26(16P13.3) WILD-TYPE     26     33     11     18     29     16
                                vv
clus                             CLUS_7
  DEL PEAK 26(16P13.3) MUTATED        2
  DEL PEAK 26(16P13.3) WILD-TYPE     18
D50V8, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            3                             33
  CLUS_3                            1                             11
  CLUS_4                            1                             18
  CLUS_5                            3                             29
  CLUS_6                            2                             16
  CLUS_7                            2                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16P13.3) MUTATED        0      4      0      0      7
  DEL PEAK 26(16P13.3) WILD-TYPE     18     38     17      8     49
D50V9, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            0                             18
  CLUS_2                            4                             38
  CLUS_3                            0                             17
  CLUS_4                            0                              8
  CLUS_5                            7                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16P13.3) MUTATED        1      4      6
  DEL PEAK 26(16P13.3) WILD-TYPE     21     59     50
D50V10, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            1                             21
  CLUS_2                            4                             59
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16P13.3) MUTATED        1      0      2      0
  DEL PEAK 26(16P13.3) WILD-TYPE      8     14     12     13
D50V11, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                             14
  CLUS_3                            2                             12
  CLUS_4                            0                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16P13.3) MUTATED        1      0      1      0      1
  DEL PEAK 26(16P13.3) WILD-TYPE      8     13     17      5      4
D50V12, multiclass
        clus
vv       DEL PEAK 26(16P13.3) MUTATED DEL PEAK 26(16P13.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                             13
  CLUS_3                            1                             17
  CLUS_4                            0                              5
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 27(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED        1      5      2
  DEL PEAK 27(16Q23.1) WILD-TYPE     24     17     20
D51V1, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            1                             24
  CLUS_2                            5                             17
  CLUS_3                            2                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16Q23.1) MUTATED        1      1      0      1      1      1
  DEL PEAK 27(16Q23.1) WILD-TYPE      5     12     13      8      7      8
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 27(16Q23.1) MUTATED        3      0
  DEL PEAK 27(16Q23.1) WILD-TYPE      5      3
D51V2, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            1                             12
  CLUS_3                            0                             13
  CLUS_4                            1                              8
  CLUS_5                            1                              7
  CLUS_6                            1                              8
  CLUS_7                            3                              5
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q23.1) MUTATED        5      6      1     11
  DEL PEAK 27(16Q23.1) WILD-TYPE     61     26     30     25
D51V3, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            5                             61
  CLUS_2                            6                             26
  CLUS_3                            1                             30
  CLUS_4                           11                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED        2      5      8
  DEL PEAK 27(16Q23.1) WILD-TYPE     26     34     21
D51V4, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            2                             26
  CLUS_2                            5                             34
  CLUS_3                            8                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED        6      4      6
  DEL PEAK 27(16Q23.1) WILD-TYPE     27     36     47
D51V5, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            4                             36
  CLUS_3                            6                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16Q23.1) MUTATED        4      2      4      1      4      1
  DEL PEAK 27(16Q23.1) WILD-TYPE     21     21     25      5     25     13
D51V6, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            4                             21
  CLUS_2                            2                             21
  CLUS_3                            4                             25
  CLUS_4                            1                              5
  CLUS_5                            4                             25
  CLUS_6                            1                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q23.1) MUTATED        5      1      8      3      6
  DEL PEAK 27(16Q23.1) WILD-TYPE     24     13     25     25     54
D51V7, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            1                             13
  CLUS_3                            8                             25
  CLUS_4                            3                             25
  CLUS_5                            6                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16Q23.1) MUTATED        4      7      3      1      4      2
  DEL PEAK 27(16Q23.1) WILD-TYPE     23     29      9     18     28     16
                                vv
clus                             CLUS_7
  DEL PEAK 27(16Q23.1) MUTATED        2
  DEL PEAK 27(16Q23.1) WILD-TYPE     18
D51V8, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            4                             23
  CLUS_2                            7                             29
  CLUS_3                            3                              9
  CLUS_4                            1                             18
  CLUS_5                            4                             28
  CLUS_6                            2                             16
  CLUS_7                            2                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q23.1) MUTATED        3      7      1      0      8
  DEL PEAK 27(16Q23.1) WILD-TYPE     15     35     16      8     48
D51V9, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                            7                             35
  CLUS_3                            1                             16
  CLUS_4                            0                              8
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED        2     10      7
  DEL PEAK 27(16Q23.1) WILD-TYPE     20     53     49
D51V10, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                           10                             53
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q23.1) MUTATED        1      2      3      3
  DEL PEAK 27(16Q23.1) WILD-TYPE      8     12     11     10
D51V11, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                             12
  CLUS_3                            3                             11
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q23.1) MUTATED        1      3      4      0      1
  DEL PEAK 27(16Q23.1) WILD-TYPE      8     10     14      5      4
D51V12, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                             10
  CLUS_3                            4                             14
  CLUS_4                            0                              5
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 28(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P11.2) MUTATED       14     15     19
  DEL PEAK 28(17P11.2) WILD-TYPE     11      7      3
D52V1, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           14                             11
  CLUS_2                           15                              7
  CLUS_3                           19                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(17P11.2) MUTATED        3     10      9      8      6      5
  DEL PEAK 28(17P11.2) WILD-TYPE      3      3      4      1      2      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 28(17P11.2) MUTATED        5      2
  DEL PEAK 28(17P11.2) WILD-TYPE      3      1
D52V2, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                           10                              3
  CLUS_3                            9                              4
  CLUS_4                            8                              1
  CLUS_5                            6                              2
  CLUS_6                            5                              4
  CLUS_7                            5                              3
  CLUS_8                            2                              1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(17P11.2) MUTATED       40     24     19     30
  DEL PEAK 28(17P11.2) WILD-TYPE     26      8     12      6
D52V3, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           40                             26
  CLUS_2                           24                              8
  CLUS_3                           19                             12
  CLUS_4                           30                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P11.2) MUTATED       19     24     23
  DEL PEAK 28(17P11.2) WILD-TYPE      9     15      6
D52V4, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           19                              9
  CLUS_2                           24                             15
  CLUS_3                           23                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P11.2) MUTATED       24     28     35
  DEL PEAK 28(17P11.2) WILD-TYPE      9     12     18
D52V5, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           24                              9
  CLUS_2                           28                             12
  CLUS_3                           35                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(17P11.2) MUTATED       19     17     15      5     20     11
  DEL PEAK 28(17P11.2) WILD-TYPE      6      6     14      1      9      3
D52V6, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           19                              6
  CLUS_2                           17                              6
  CLUS_3                           15                             14
  CLUS_4                            5                              1
  CLUS_5                           20                              9
  CLUS_6                           11                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P11.2) MUTATED       20     11     19     19     43
  DEL PEAK 28(17P11.2) WILD-TYPE      9      3     14      9     17
D52V7, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           20                              9
  CLUS_2                           11                              3
  CLUS_3                           19                             14
  CLUS_4                           19                              9
  CLUS_5                           43                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(17P11.2) MUTATED       21     24     10     10     22      9
  DEL PEAK 28(17P11.2) WILD-TYPE      6     12      2      9     10      9
                                vv
clus                             CLUS_7
  DEL PEAK 28(17P11.2) MUTATED       16
  DEL PEAK 28(17P11.2) WILD-TYPE      4
D52V8, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           21                              6
  CLUS_2                           24                             12
  CLUS_3                           10                              2
  CLUS_4                           10                              9
  CLUS_5                           22                             10
  CLUS_6                            9                              9
  CLUS_7                           16                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P11.2) MUTATED       12     27     13      6     38
  DEL PEAK 28(17P11.2) WILD-TYPE      6     15      4      2     18
D52V9, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                           27                             15
  CLUS_3                           13                              4
  CLUS_4                            6                              2
  CLUS_5                           38                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P11.2) MUTATED       18     41     37
  DEL PEAK 28(17P11.2) WILD-TYPE      4     22     19
D52V10, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           18                              4
  CLUS_2                           41                             22
  CLUS_3                           37                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(17P11.2) MUTATED        4     10      9      9
  DEL PEAK 28(17P11.2) WILD-TYPE      5      4      5      4
D52V11, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                           10                              4
  CLUS_3                            9                              5
  CLUS_4                            9                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P11.2) MUTATED        7      9     11      2      3
  DEL PEAK 28(17P11.2) WILD-TYPE      2      4      7      3      2
D52V12, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                            9                              4
  CLUS_3                           11                              7
  CLUS_4                            2                              3
  CLUS_5                            3                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 29(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q21.2) MUTATED       19     20     21
  DEL PEAK 29(18Q21.2) WILD-TYPE      6      2      1
D53V1, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           19                              6
  CLUS_2                           20                              2
  CLUS_3                           21                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q21.2) MUTATED        4     12     10      9      8      8
  DEL PEAK 29(18Q21.2) WILD-TYPE      2      1      3      0      0      1
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 29(18Q21.2) MUTATED        7      2
  DEL PEAK 29(18Q21.2) WILD-TYPE      1      1
D53V2, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                           12                              1
  CLUS_3                           10                              3
  CLUS_4                            9                              0
  CLUS_5                            8                              0
  CLUS_6                            8                              1
  CLUS_7                            7                              1
  CLUS_8                            2                              1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(18Q21.2) MUTATED       48     30     31     36
  DEL PEAK 29(18Q21.2) WILD-TYPE     18      2      0      0
D53V3, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           48                             18
  CLUS_2                           30                              2
  CLUS_3                           31                              0
  CLUS_4                           36                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q21.2) MUTATED       28     32     26
  DEL PEAK 29(18Q21.2) WILD-TYPE      0      7      3
D53V4, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           28                              0
  CLUS_2                           32                              7
  CLUS_3                           26                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q21.2) MUTATED       29     35     47
  DEL PEAK 29(18Q21.2) WILD-TYPE      4      5      6
D53V5, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           29                              4
  CLUS_2                           35                              5
  CLUS_3                           47                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q21.2) MUTATED       22     20     25      5     25     14
  DEL PEAK 29(18Q21.2) WILD-TYPE      3      3      4      1      4      0
D53V6, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           22                              3
  CLUS_2                           20                              3
  CLUS_3                           25                              4
  CLUS_4                            5                              1
  CLUS_5                           25                              4
  CLUS_6                           14                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       27     13     23     26     55
  DEL PEAK 29(18Q21.2) WILD-TYPE      2      1     10      2      5
D53V7, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           27                              2
  CLUS_2                           13                              1
  CLUS_3                           23                             10
  CLUS_4                           26                              2
  CLUS_5                           55                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q21.2) MUTATED       27     32      8     17     29     13
  DEL PEAK 29(18Q21.2) WILD-TYPE      0      4      4      2      3      5
                                vv
clus                             CLUS_7
  DEL PEAK 29(18Q21.2) MUTATED       18
  DEL PEAK 29(18Q21.2) WILD-TYPE      2
D53V8, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           27                              0
  CLUS_2                           32                              4
  CLUS_3                            8                              4
  CLUS_4                           17                              2
  CLUS_5                           29                              3
  CLUS_6                           13                              5
  CLUS_7                           18                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       17     40     15      7     47
  DEL PEAK 29(18Q21.2) WILD-TYPE      1      2      2      1      9
D53V9, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           17                              1
  CLUS_2                           40                              2
  CLUS_3                           15                              2
  CLUS_4                            7                              1
  CLUS_5                           47                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q21.2) MUTATED       22     57     47
  DEL PEAK 29(18Q21.2) WILD-TYPE      0      6      9
D53V10, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           22                              0
  CLUS_2                           57                              6
  CLUS_3                           47                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(18Q21.2) MUTATED        9     13     12     12
  DEL PEAK 29(18Q21.2) WILD-TYPE      0      1      2      1
D53V11, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                            9                              0
  CLUS_2                           13                              1
  CLUS_3                           12                              2
  CLUS_4                           12                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED        9     11     16      5      5
  DEL PEAK 29(18Q21.2) WILD-TYPE      0      2      2      0      0
D53V12, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                            9                              0
  CLUS_2                           11                              2
  CLUS_3                           16                              2
  CLUS_4                            5                              0
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 30(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       18     20     21
  DEL PEAK 30(18Q22.1) WILD-TYPE      7      2      1
D54V1, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           18                              7
  CLUS_2                           20                              2
  CLUS_3                           21                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(18Q22.1) MUTATED        4     12     10      9      8      8
  DEL PEAK 30(18Q22.1) WILD-TYPE      2      1      3      0      0      1
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 30(18Q22.1) MUTATED        7      1
  DEL PEAK 30(18Q22.1) WILD-TYPE      1      2
D54V2, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                           12                              1
  CLUS_3                           10                              3
  CLUS_4                            9                              0
  CLUS_5                            8                              0
  CLUS_6                            8                              1
  CLUS_7                            7                              1
  CLUS_8                            1                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(18Q22.1) MUTATED       44     30     31     36
  DEL PEAK 30(18Q22.1) WILD-TYPE     22      2      0      0
D54V3, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           44                             22
  CLUS_2                           30                              2
  CLUS_3                           31                              0
  CLUS_4                           36                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       28     31     24
  DEL PEAK 30(18Q22.1) WILD-TYPE      0      8      5
D54V4, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           28                              0
  CLUS_2                           31                              8
  CLUS_3                           24                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       27     34     46
  DEL PEAK 30(18Q22.1) WILD-TYPE      6      6      7
D54V5, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           27                              6
  CLUS_2                           34                              6
  CLUS_3                           46                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(18Q22.1) MUTATED       21     19     24      5     24     14
  DEL PEAK 30(18Q22.1) WILD-TYPE      4      4      5      1      5      0
D54V6, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           21                              4
  CLUS_2                           19                              4
  CLUS_3                           24                              5
  CLUS_4                            5                              1
  CLUS_5                           24                              5
  CLUS_6                           14                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED       25     12     23     26     54
  DEL PEAK 30(18Q22.1) WILD-TYPE      4      2     10      2      6
D54V7, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           25                              4
  CLUS_2                           12                              2
  CLUS_3                           23                             10
  CLUS_4                           26                              2
  CLUS_5                           54                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(18Q22.1) MUTATED       27     30      7     17     29     13
  DEL PEAK 30(18Q22.1) WILD-TYPE      0      6      5      2      3      5
                                vv
clus                             CLUS_7
  DEL PEAK 30(18Q22.1) MUTATED       17
  DEL PEAK 30(18Q22.1) WILD-TYPE      3
D54V8, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           27                              0
  CLUS_2                           30                              6
  CLUS_3                            7                              5
  CLUS_4                           17                              2
  CLUS_5                           29                              3
  CLUS_6                           13                              5
  CLUS_7                           17                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED       16     38     15      7     46
  DEL PEAK 30(18Q22.1) WILD-TYPE      2      4      2      1     10
D54V9, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           16                              2
  CLUS_2                           38                              4
  CLUS_3                           15                              2
  CLUS_4                            7                              1
  CLUS_5                           46                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       21     55     46
  DEL PEAK 30(18Q22.1) WILD-TYPE      1      8     10
D54V10, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           21                              1
  CLUS_2                           55                              8
  CLUS_3                           46                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(18Q22.1) MUTATED        8     13     11     12
  DEL PEAK 30(18Q22.1) WILD-TYPE      1      1      3      1
D54V11, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                           13                              1
  CLUS_3                           11                              3
  CLUS_4                           12                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED        8     11     15      5      5
  DEL PEAK 30(18Q22.1) WILD-TYPE      1      2      3      0      0
D54V12, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                           11                              2
  CLUS_3                           15                              3
  CLUS_4                            5                              0
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 31(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED        2      6      5
  DEL PEAK 31(19P13.3) WILD-TYPE     23     16     17
D55V1, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            6                             16
  CLUS_3                            5                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(19P13.3) MUTATED        1      4      2      3      1      1
  DEL PEAK 31(19P13.3) WILD-TYPE      5      9     11      6      7      8
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 31(19P13.3) MUTATED        1      0
  DEL PEAK 31(19P13.3) WILD-TYPE      7      3
D55V2, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                              9
  CLUS_3                            2                             11
  CLUS_4                            3                              6
  CLUS_5                            1                              7
  CLUS_6                            1                              8
  CLUS_7                            1                              7
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19P13.3) MUTATED       12      9      7      9
  DEL PEAK 31(19P13.3) WILD-TYPE     54     23     24     27
D55V3, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                            9                             23
  CLUS_3                            7                             24
  CLUS_4                            9                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       12      7      5
  DEL PEAK 31(19P13.3) WILD-TYPE     16     32     24
D55V4, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           12                             16
  CLUS_2                            7                             32
  CLUS_3                            5                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED        7      8     12
  DEL PEAK 31(19P13.3) WILD-TYPE     26     32     41
D55V5, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            7                             26
  CLUS_2                            8                             32
  CLUS_3                           12                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(19P13.3) MUTATED        5      6      5      2      5      4
  DEL PEAK 31(19P13.3) WILD-TYPE     20     17     24      4     24     10
D55V6, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            5                             20
  CLUS_2                            6                             17
  CLUS_3                            5                             24
  CLUS_4                            2                              4
  CLUS_5                            5                             24
  CLUS_6                            4                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19P13.3) MUTATED        9      3      6      5     13
  DEL PEAK 31(19P13.3) WILD-TYPE     20     11     27     23     47
D55V7, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            3                             11
  CLUS_3                            6                             27
  CLUS_4                            5                             23
  CLUS_5                           13                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(19P13.3) MUTATED        6      8      3      6      7      3
  DEL PEAK 31(19P13.3) WILD-TYPE     21     28      9     13     25     15
                                vv
clus                             CLUS_7
  DEL PEAK 31(19P13.3) MUTATED        3
  DEL PEAK 31(19P13.3) WILD-TYPE     17
D55V8, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                            8                             28
  CLUS_3                            3                              9
  CLUS_4                            6                             13
  CLUS_5                            7                             25
  CLUS_6                            3                             15
  CLUS_7                            3                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19P13.3) MUTATED        6     13      3      3     10
  DEL PEAK 31(19P13.3) WILD-TYPE     12     29     14      5     46
D55V9, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                           13                             29
  CLUS_3                            3                             14
  CLUS_4                            3                              5
  CLUS_5                           10                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       12     15      8
  DEL PEAK 31(19P13.3) WILD-TYPE     10     48     48
D55V10, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           12                             10
  CLUS_2                           15                             48
  CLUS_3                            8                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19P13.3) MUTATED        4      5      3      6
  DEL PEAK 31(19P13.3) WILD-TYPE      5      9     11      7
D55V11, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            5                              9
  CLUS_3                            3                             11
  CLUS_4                            6                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19P13.3) MUTATED        6      4      5      2      1
  DEL PEAK 31(19P13.3) WILD-TYPE      3      9     13      3      4
D55V12, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            4                              9
  CLUS_3                            5                             13
  CLUS_4                            2                              3
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 32(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED        6      7      6
  DEL PEAK 32(20P12.1) WILD-TYPE     19     15     16
D56V1, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                            7                             15
  CLUS_3                            6                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(20P12.1) MUTATED        2      1      3      3      3      5
  DEL PEAK 32(20P12.1) WILD-TYPE      4     12     10      6      5      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 32(20P12.1) MUTATED        2      0
  DEL PEAK 32(20P12.1) WILD-TYPE      6      3
D56V2, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                             12
  CLUS_3                            3                             10
  CLUS_4                            3                              6
  CLUS_5                            3                              5
  CLUS_6                            5                              4
  CLUS_7                            2                              6
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED       13      7     12     17
  DEL PEAK 32(20P12.1) WILD-TYPE     53     25     19     19
D56V3, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                           13                             53
  CLUS_2                            7                             25
  CLUS_3                           12                             19
  CLUS_4                           17                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED       11     10     10
  DEL PEAK 32(20P12.1) WILD-TYPE     17     29     19
D56V4, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                           11                             17
  CLUS_2                           10                             29
  CLUS_3                           10                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED        9     16     13
  DEL PEAK 32(20P12.1) WILD-TYPE     24     24     40
D56V5, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            9                             24
  CLUS_2                           16                             24
  CLUS_3                           13                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(20P12.1) MUTATED        8      4      8      3     12      3
  DEL PEAK 32(20P12.1) WILD-TYPE     17     19     21      3     17     11
D56V6, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            8                             17
  CLUS_2                            4                             19
  CLUS_3                            8                             21
  CLUS_4                            3                              3
  CLUS_5                           12                             17
  CLUS_6                            3                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(20P12.1) MUTATED        9      6      7     10     16
  DEL PEAK 32(20P12.1) WILD-TYPE     20      8     26     18     44
D56V7, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            6                              8
  CLUS_3                            7                             26
  CLUS_4                           10                             18
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(20P12.1) MUTATED       11     11      3      4      9      2
  DEL PEAK 32(20P12.1) WILD-TYPE     16     25      9     15     23     16
                                vv
clus                             CLUS_7
  DEL PEAK 32(20P12.1) MUTATED        8
  DEL PEAK 32(20P12.1) WILD-TYPE     12
D56V8, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                           11                             25
  CLUS_3                            3                              9
  CLUS_4                            4                             15
  CLUS_5                            9                             23
  CLUS_6                            2                             16
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(20P12.1) MUTATED        5     13      2      4     15
  DEL PEAK 32(20P12.1) WILD-TYPE     13     29     15      4     41
D56V9, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                           13                             29
  CLUS_3                            2                             15
  CLUS_4                            4                              4
  CLUS_5                           15                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED        9     14     16
  DEL PEAK 32(20P12.1) WILD-TYPE     13     49     40
D56V10, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                           14                             49
  CLUS_3                           16                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED        1      4      6      3
  DEL PEAK 32(20P12.1) WILD-TYPE      8     10      8     10
D56V11, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            4                             10
  CLUS_3                            6                              8
  CLUS_4                            3                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(20P12.1) MUTATED        2      6      5      1      0
  DEL PEAK 32(20P12.1) WILD-TYPE      7      7     13      4      5
D56V12, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            6                              7
  CLUS_3                            5                             13
  CLUS_4                            1                              4
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 33(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q11.2) MUTATED        7      7     11
  DEL PEAK 33(21Q11.2) WILD-TYPE     18     15     11
D57V1, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                            7                             15
  CLUS_3                           11                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(21Q11.2) MUTATED        3      4      2      5      5      1
  DEL PEAK 33(21Q11.2) WILD-TYPE      3      9     11      4      3      8
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 33(21Q11.2) MUTATED        5      0
  DEL PEAK 33(21Q11.2) WILD-TYPE      3      3
D57V2, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            4                              9
  CLUS_3                            2                             11
  CLUS_4                            5                              4
  CLUS_5                            5                              3
  CLUS_6                            1                              8
  CLUS_7                            5                              3
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(21Q11.2) MUTATED       22     17     18     16
  DEL PEAK 33(21Q11.2) WILD-TYPE     44     15     13     20
D57V3, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                           22                             44
  CLUS_2                           17                             15
  CLUS_3                           18                             13
  CLUS_4                           16                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q11.2) MUTATED       14     19     16
  DEL PEAK 33(21Q11.2) WILD-TYPE     14     20     13
D57V4, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                           14                             14
  CLUS_2                           19                             20
  CLUS_3                           16                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q11.2) MUTATED       14     19     25
  DEL PEAK 33(21Q11.2) WILD-TYPE     19     21     28
D57V5, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                           14                             19
  CLUS_2                           19                             21
  CLUS_3                           25                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(21Q11.2) MUTATED       11      8     13      1     15     10
  DEL PEAK 33(21Q11.2) WILD-TYPE     14     15     16      5     14      4
D57V6, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                           11                             14
  CLUS_2                            8                             15
  CLUS_3                           13                             16
  CLUS_4                            1                              5
  CLUS_5                           15                             14
  CLUS_6                           10                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(21Q11.2) MUTATED       11      8     15     15     23
  DEL PEAK 33(21Q11.2) WILD-TYPE     18      6     18     13     37
D57V7, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            8                              6
  CLUS_3                           15                             18
  CLUS_4                           15                             13
  CLUS_5                           23                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(21Q11.2) MUTATED       15     18      4      7     14      6
  DEL PEAK 33(21Q11.2) WILD-TYPE     12     18      8     12     18     12
                                vv
clus                             CLUS_7
  DEL PEAK 33(21Q11.2) MUTATED        8
  DEL PEAK 33(21Q11.2) WILD-TYPE     12
D57V8, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                           18                             18
  CLUS_3                            4                              8
  CLUS_4                            7                             12
  CLUS_5                           14                             18
  CLUS_6                            6                             12
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(21Q11.2) MUTATED        6     25      5      6     24
  DEL PEAK 33(21Q11.2) WILD-TYPE     12     17     12      2     32
D57V9, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                           25                             17
  CLUS_3                            5                             12
  CLUS_4                            6                              2
  CLUS_5                           24                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q11.2) MUTATED       12     28     26
  DEL PEAK 33(21Q11.2) WILD-TYPE     10     35     30
D57V10, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                           12                             10
  CLUS_2                           28                             35
  CLUS_3                           26                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(21Q11.2) MUTATED        4      4      9      8
  DEL PEAK 33(21Q11.2) WILD-TYPE      5     10      5      5
D57V11, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            4                             10
  CLUS_3                            9                              5
  CLUS_4                            8                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(21Q11.2) MUTATED        4      5     13      2      1
  DEL PEAK 33(21Q11.2) WILD-TYPE      5      8      5      3      4
D57V12, multiclass
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            5                              8
  CLUS_3                           13                              5
  CLUS_4                            2                              3
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 34(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(22Q13.31) MUTATED        9      9      9
  DEL PEAK 34(22Q13.31) WILD-TYPE     16     13     13
D58V1, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                             9                              16
  CLUS_2                             9                              13
  CLUS_3                             9                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(22Q13.31) MUTATED        1      4      4      6      5      3
  DEL PEAK 34(22Q13.31) WILD-TYPE      5      9      9      3      3      6
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 34(22Q13.31) MUTATED        4      0
  DEL PEAK 34(22Q13.31) WILD-TYPE      4      3
D58V2, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             4                               9
  CLUS_3                             4                               9
  CLUS_4                             6                               3
  CLUS_5                             5                               3
  CLUS_6                             3                               6
  CLUS_7                             4                               4
  CLUS_8                             0                               3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(22Q13.31) MUTATED       19     21     13     15
  DEL PEAK 34(22Q13.31) WILD-TYPE     47     11     18     21
D58V3, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                            19                              47
  CLUS_2                            21                              11
  CLUS_3                            13                              18
  CLUS_4                            15                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(22Q13.31) MUTATED       11     18     13
  DEL PEAK 34(22Q13.31) WILD-TYPE     17     21     16
D58V4, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                            11                              17
  CLUS_2                            18                              21
  CLUS_3                            13                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(22Q13.31) MUTATED       12     15     26
  DEL PEAK 34(22Q13.31) WILD-TYPE     21     25     27
D58V5, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                            12                              21
  CLUS_2                            15                              25
  CLUS_3                            26                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(22Q13.31) MUTATED       11      5     14      2     14      7
  DEL PEAK 34(22Q13.31) WILD-TYPE     14     18     15      4     15      7
D58V6, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                            11                              14
  CLUS_2                             5                              18
  CLUS_3                            14                              15
  CLUS_4                             2                               4
  CLUS_5                            14                              15
  CLUS_6                             7                               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(22Q13.31) MUTATED       10      8     16      9     25
  DEL PEAK 34(22Q13.31) WILD-TYPE     19      6     17     19     35
D58V7, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                            10                              19
  CLUS_2                             8                               6
  CLUS_3                            16                              17
  CLUS_4                             9                              19
  CLUS_5                            25                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(22Q13.31) MUTATED       11     20      4      5     16      5
  DEL PEAK 34(22Q13.31) WILD-TYPE     16     16      8     14     16     13
                                 vv
clus                              CLUS_7
  DEL PEAK 34(22Q13.31) MUTATED        7
  DEL PEAK 34(22Q13.31) WILD-TYPE     13
D58V8, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                            11                              16
  CLUS_2                            20                              16
  CLUS_3                             4                               8
  CLUS_4                             5                              14
  CLUS_5                            16                              16
  CLUS_6                             5                              13
  CLUS_7                             7                              13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(22Q13.31) MUTATED        5     27      3      4     23
  DEL PEAK 34(22Q13.31) WILD-TYPE     13     15     14      4     33
D58V9, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                             5                              13
  CLUS_2                            27                              15
  CLUS_3                             3                              14
  CLUS_4                             4                               4
  CLUS_5                            23                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(22Q13.31) MUTATED       14     27     21
  DEL PEAK 34(22Q13.31) WILD-TYPE      8     36     35
D58V10, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                            14                               8
  CLUS_2                            27                              36
  CLUS_3                            21                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(22Q13.31) MUTATED        3      6     11      5
  DEL PEAK 34(22Q13.31) WILD-TYPE      6      8      3      8
D58V11, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                             3                               6
  CLUS_2                             6                               8
  CLUS_3                            11                               3
  CLUS_4                             5                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(22Q13.31) MUTATED        7      4     12      2      0
  DEL PEAK 34(22Q13.31) WILD-TYPE      2      9      6      3      5
D58V12, multiclass
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  CLUS_1                             7                               2
  CLUS_2                             4                               9
  CLUS_3                            12                               6
  CLUS_4                             2                               3
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 35(XP22.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XP22.33) MUTATED        7      6      4
  DEL PEAK 35(XP22.33) WILD-TYPE     18     16     18
D59V1, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                            6                             16
  CLUS_3                            4                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(XP22.33) MUTATED        1      4      4      1      3      2
  DEL PEAK 35(XP22.33) WILD-TYPE      5      9      9      8      5      7
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 35(XP22.33) MUTATED        2      0
  DEL PEAK 35(XP22.33) WILD-TYPE      6      3
D59V2, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                              9
  CLUS_3                            4                              9
  CLUS_4                            1                              8
  CLUS_5                            3                              5
  CLUS_6                            2                              7
  CLUS_7                            2                              6
  CLUS_8                            0                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XP22.33) MUTATED        9     11      4     10
  DEL PEAK 35(XP22.33) WILD-TYPE     57     21     27     26
D59V3, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            9                             57
  CLUS_2                           11                             21
  CLUS_3                            4                             27
  CLUS_4                           10                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XP22.33) MUTATED        5     12      0
  DEL PEAK 35(XP22.33) WILD-TYPE     23     27     29
D59V4, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            5                             23
  CLUS_2                           12                             27
  CLUS_3                            0                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XP22.33) MUTATED        6      7     13
  DEL PEAK 35(XP22.33) WILD-TYPE     27     33     40
D59V5, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            7                             33
  CLUS_3                           13                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(XP22.33) MUTATED        6      5      6      1      4      4
  DEL PEAK 35(XP22.33) WILD-TYPE     19     18     23      5     25     10
D59V6, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                            5                             18
  CLUS_3                            6                             23
  CLUS_4                            1                              5
  CLUS_5                            4                             25
  CLUS_6                            4                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XP22.33) MUTATED        6      2      7      5     14
  DEL PEAK 35(XP22.33) WILD-TYPE     23     12     26     23     46
D59V7, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            2                             12
  CLUS_3                            7                             26
  CLUS_4                            5                             23
  CLUS_5                           14                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(XP22.33) MUTATED        5      6      1      5      6      7
  DEL PEAK 35(XP22.33) WILD-TYPE     22     30     11     14     26     11
                                vv
clus                             CLUS_7
  DEL PEAK 35(XP22.33) MUTATED        4
  DEL PEAK 35(XP22.33) WILD-TYPE     16
D59V8, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                            6                             30
  CLUS_3                            1                             11
  CLUS_4                            5                             14
  CLUS_5                            6                             26
  CLUS_6                            7                             11
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XP22.33) MUTATED        2      9      5      1     14
  DEL PEAK 35(XP22.33) WILD-TYPE     16     33     12      7     42
D59V9, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            9                             33
  CLUS_3                            5                             12
  CLUS_4                            1                              7
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XP22.33) MUTATED        5     14     12
  DEL PEAK 35(XP22.33) WILD-TYPE     17     49     44
D59V10, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                           14                             49
  CLUS_3                           12                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XP22.33) MUTATED        1      4      3      1
  DEL PEAK 35(XP22.33) WILD-TYPE      8     10     11     12
D59V11, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            4                             10
  CLUS_3                            3                             11
  CLUS_4                            1                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XP22.33) MUTATED        1      3      3      0      2
  DEL PEAK 35(XP22.33) WILD-TYPE      8     10     15      5      3
D59V12, multiclass
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                             10
  CLUS_3                            3                             15
  CLUS_4                            0                              5
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
