[1] "ofn"        "-oTSARC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SARC-TP/15111074/SARC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/15098587/transformed.cor.cli.txt"

nPatients in clinical file=260, in cluster file=256, common to both=256
[1]  82 256
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               56               200 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               56               200 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               49               207 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               49               207 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               22               234 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               22               234 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               22               234 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               22               234 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               39               217 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               39               217 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               36               220 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               36               220 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               68               188 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               68               188 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               47               209 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               47               209 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               98               158 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               98               158 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               71               185 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               71               185 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               51               205 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               51               205 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               50               206 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               50               206 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               82               174 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               82               174 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               68               188 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               68               188 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               52               204 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               52               204 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               65               191 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               65               191 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               57               199 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               57               199 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               73               183 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               73               183 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                23                233 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                23                233 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                12                244 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                12                244 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                23                233 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                23                233 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                22                234 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                22                234 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                43                213 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                43                213 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                34                222 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                34                222 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                241 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                241 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                57                199 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                57                199 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                63                193 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                63                193 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                40                216 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                40                216 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                21                235 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                21                235 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                61                195 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                61                195 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                57                199 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                57                199 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                53                203 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                53                203 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                36                220 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                36                220 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                87                169 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                87                169 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                65                191 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                65                191 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                62                194 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                62                194 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                83                173 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                83                173 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                58                198 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                58                198 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                60                196 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                60                196 
[1] "XP GAIN MUTATION ANALYSIS"
[1] 3
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               74               182 
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               74               182 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               33               223 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               33               223 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               32               224 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               32               224 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               40               216 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               40               216 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               88               168 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               88               168 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               71               185 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               71               185 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               200 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               200 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               49               207 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               49               207 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               42               214 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               42               214 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               51               205 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               51               205 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               22               234 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               22               234 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               35               221 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               35               221 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               60               196 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               60               196 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               53               203 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               53               203 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               32               224 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               32               224 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               34               222 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               34               222 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               62               194 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               62               194 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               46               210 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               46               210 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               83               173 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               83               173 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               51               205 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               51               205 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               120                136 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               120                136 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               131                125 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               131                125 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                94                162 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                94                162 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                91                165 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                91                165 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                65                191 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                65                191 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                54                202 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                54                202 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               132                124 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               132                124 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                62                194 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                62                194 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                45                211 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                45                211 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                75                181 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                75                181 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               124                132 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               124                132 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                57                199 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                57                199 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                48                208 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                48                208 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                62                194 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                62                194 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                72                184 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                72                184 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                21                235 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                21                235 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                39                217 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                39                217 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                55                201 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                55                201 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                231 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                231 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                50                206 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                50                206 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                66                190 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                66                190 
[1] "XP LOSS MUTATION ANALYSIS"
[1] 3
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               62               194 
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               62               194 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              101               155 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              101               155 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 256 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 256 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       27      8     16      5
  1P GAIN WILD-TYPE     43     78     58     21
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              27                43
  CLUS_2               8                78
  CLUS_3              16                58
  CLUS_4               5                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED        9      7     13      2     22      0      3
  1P GAIN WILD-TYPE     39     39     48     32     25     15      2
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               9                39
  CLUS_2               7                39
  CLUS_3              13                48
  CLUS_4               2                32
  CLUS_5              22                25
  CLUS_6               0                15
  CLUS_7               3                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        9     29     11
  1P GAIN WILD-TYPE     49     71     49
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               9                49
  CLUS_2              29                71
  CLUS_3              11                49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P GAIN MUTATED        7      5     16     12      4      5
  1P GAIN WILD-TYPE     17     23     23     56     33     17
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               5                23
  CLUS_3              16                23
  CLUS_4              12                56
  CLUS_5               4                33
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       30     16     10
  1P GAIN WILD-TYPE     84     61     53
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              30                84
  CLUS_2              16                61
  CLUS_3              10                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED        9      6      9      4     10      6     12
  1P GAIN WILD-TYPE     37     17     40     42     18     23     21
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               9                37
  CLUS_2               6                17
  CLUS_3               9                40
  CLUS_4               4                42
  CLUS_5              10                18
  CLUS_6               6                23
  CLUS_7              12                21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       20     15     19
  1P GAIN WILD-TYPE     87     35     78
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              20                87
  CLUS_2              15                35
  CLUS_3              19                78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       20     11     20      3
  1P GAIN WILD-TYPE     59     41     80     20
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              20                59
  CLUS_2              11                41
  CLUS_3              20                80
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       14     20     14
  1P GAIN WILD-TYPE     69     44     32
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              14                69
  CLUS_2              20                44
  CLUS_3              14                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1P GAIN MUTATED        7      4     12      7      1      8      6      3
  1P GAIN WILD-TYPE     17     28     25     17     10     14     15     19
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               4                28
  CLUS_3              12                25
  CLUS_4               7                17
  CLUS_5               1                10
  CLUS_6               8                14
  CLUS_7               6                15
  CLUS_8               3                19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       20      8     19      2
  1Q GAIN WILD-TYPE     50     78     55     24
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              20                50
  CLUS_2               8                78
  CLUS_3              19                55
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED        5      4     18      5     14      1      2
  1Q GAIN WILD-TYPE     43     42     43     29     33     14      3
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               5                43
  CLUS_2               4                42
  CLUS_3              18                43
  CLUS_4               5                29
  CLUS_5              14                33
  CLUS_6               1                14
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        7     17     16
  1Q GAIN WILD-TYPE     51     83     44
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                51
  CLUS_2              17                83
  CLUS_3              16                44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q GAIN MUTATED        4      3     11     18      1      3
  1Q GAIN WILD-TYPE     20     25     28     50     36     19
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               3                25
  CLUS_3              11                28
  CLUS_4              18                50
  CLUS_5               1                36
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       20     23      6
  1Q GAIN WILD-TYPE     94     54     57
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              20                94
  CLUS_2              23                54
  CLUS_3               6                57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED        7      4     13      4      5      9      7
  1Q GAIN WILD-TYPE     39     19     36     42     23     20     26
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                39
  CLUS_2               4                19
  CLUS_3              13                36
  CLUS_4               4                42
  CLUS_5               5                23
  CLUS_6               9                20
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       12     10     25
  1Q GAIN WILD-TYPE     95     40     72
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              12                95
  CLUS_2              10                40
  CLUS_3              25                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       12      7     26      2
  1Q GAIN WILD-TYPE     67     45     74     21
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              12                67
  CLUS_2               7                45
  CLUS_3              26                74
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        8     23     10
  1Q GAIN WILD-TYPE     75     41     36
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               8                75
  CLUS_2              23                41
  CLUS_3              10                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1Q GAIN MUTATED        4      1     14      8      2      7      3      2
  1Q GAIN WILD-TYPE     20     31     23     16      9     15     18     20
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               1                31
  CLUS_3              14                23
  CLUS_4               8                16
  CLUS_5               2                 9
  CLUS_6               7                15
  CLUS_7               3                18
  CLUS_8               2                20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        2      3     12      5
  2P GAIN WILD-TYPE     68     83     62     21
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2                68
  CLUS_2               3                83
  CLUS_3              12                62
  CLUS_4               5                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        3      3      1      7      7      0      1
  2P GAIN WILD-TYPE     45     43     60     27     40     15      4
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                45
  CLUS_2               3                43
  CLUS_3               1                60
  CLUS_4               7                27
  CLUS_5               7                40
  CLUS_6               0                15
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        9     11      2
  2P GAIN WILD-TYPE     49     89     58
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               9                49
  CLUS_2              11                89
  CLUS_3               2                58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P GAIN MUTATED        2      3      7      2      2      6
  2P GAIN WILD-TYPE     22     25     32     66     35     16
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               3                25
  CLUS_3               7                32
  CLUS_4               2                66
  CLUS_5               2                35
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        9      1     12
  2P GAIN WILD-TYPE    105     76     51
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               9               105
  CLUS_2               1                76
  CLUS_3              12                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        3      1      1     10      6      0      1
  2P GAIN WILD-TYPE     43     22     48     36     22     29     32
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                22
  CLUS_3               1                48
  CLUS_4              10                36
  CLUS_5               6                22
  CLUS_6               0                29
  CLUS_7               1                32
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       15      4      3
  2P GAIN WILD-TYPE     92     46     94
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              15                92
  CLUS_2               4                46
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        9      7      3      3
  2P GAIN WILD-TYPE     70     45     97     20
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               9                70
  CLUS_2               7                45
  CLUS_3               3                97
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       11      1      6
  2P GAIN WILD-TYPE     72     63     40
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                72
  CLUS_2               1                63
  CLUS_3               6                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2P GAIN MUTATED        1      4      0      1      0      1      5      6
  2P GAIN WILD-TYPE     23     28     37     23     11     21     16     16
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               4                28
  CLUS_3               0                37
  CLUS_4               1                23
  CLUS_5               0                11
  CLUS_6               1                21
  CLUS_7               5                16
  CLUS_8               6                16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        2      2     14      4
  2Q GAIN WILD-TYPE     68     84     60     22
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               2                68
  CLUS_2               2                84
  CLUS_3              14                60
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED        5      4      1      5      6      0      1
  2Q GAIN WILD-TYPE     43     42     60     29     41     15      4
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               5                43
  CLUS_2               4                42
  CLUS_3               1                60
  CLUS_4               5                29
  CLUS_5               6                41
  CLUS_6               0                15
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       10      9      3
  2Q GAIN WILD-TYPE     48     91     57
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              10                48
  CLUS_2               9                91
  CLUS_3               3                57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q GAIN MUTATED        4      5      7      2      2      2
  2Q GAIN WILD-TYPE     20     23     32     66     35     20
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               5                23
  CLUS_3               7                32
  CLUS_4               2                66
  CLUS_5               2                35
  CLUS_6               2                20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       11      1     10
  2Q GAIN WILD-TYPE    103     76     53
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11               103
  CLUS_2               1                76
  CLUS_3              10                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED        4      3      1      8      6      0      0
  2Q GAIN WILD-TYPE     42     20     48     38     22     29     33
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                42
  CLUS_2               3                20
  CLUS_3               1                48
  CLUS_4               8                38
  CLUS_5               6                22
  CLUS_6               0                29
  CLUS_7               0                33
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       13      6      3
  2Q GAIN WILD-TYPE     94     44     94
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              13                94
  CLUS_2               6                44
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        7     10      3      2
  2Q GAIN WILD-TYPE     72     42     97     21
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                72
  CLUS_2              10                42
  CLUS_3               3                97
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        9      2      8
  2Q GAIN WILD-TYPE     74     62     38
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9                74
  CLUS_2               2                62
  CLUS_3               8                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2Q GAIN MUTATED        3      3      1      2      0      1      4      5
  2Q GAIN WILD-TYPE     21     29     36     22     11     21     17     17
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               3                29
  CLUS_3               1                36
  CLUS_4               2                22
  CLUS_5               0                11
  CLUS_6               1                21
  CLUS_7               4                17
  CLUS_8               5                17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       16      6     17      0
  3P GAIN WILD-TYPE     54     80     57     26
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16                54
  CLUS_2               6                80
  CLUS_3              17                57
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        2     10     13      0     14      0      0
  3P GAIN WILD-TYPE     46     36     48     34     33     15      5
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                46
  CLUS_2              10                36
  CLUS_3              13                48
  CLUS_4               0                34
  CLUS_5              14                33
  CLUS_6               0                15
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        4     20      7
  3P GAIN WILD-TYPE     54     80     53
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                54
  CLUS_2              20                80
  CLUS_3               7                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P GAIN MUTATED        2      3     10      8      7      1
  3P GAIN WILD-TYPE     22     25     29     60     30     21
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               3                25
  CLUS_3              10                29
  CLUS_4               8                60
  CLUS_5               7                30
  CLUS_6               1                21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       23     14      2
  3P GAIN WILD-TYPE     91     63     61
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              23                91
  CLUS_2              14                63
  CLUS_3               2                61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        3      4      9      0     11      4      8
  3P GAIN WILD-TYPE     43     19     40     46     17     25     25
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                43
  CLUS_2               4                19
  CLUS_3               9                40
  CLUS_4               0                46
  CLUS_5              11                17
  CLUS_6               4                25
  CLUS_7               8                25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       10     12     17
  3P GAIN WILD-TYPE     97     38     80
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              10                97
  CLUS_2              12                38
  CLUS_3              17                80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       14      7     18      0
  3P GAIN WILD-TYPE     65     45     82     23
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              14                65
  CLUS_2               7                45
  CLUS_3              18                82
  CLUS_4               0                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        7     14     16
  3P GAIN WILD-TYPE     76     50     30
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               7                76
  CLUS_2              14                50
  CLUS_3              16                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3P GAIN MUTATED        3      1      9      8      2      6      8      0
  3P GAIN WILD-TYPE     21     31     28     16      9     16     13     22
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               1                31
  CLUS_3               9                28
  CLUS_4               8                16
  CLUS_5               2                 9
  CLUS_6               6                16
  CLUS_7               8                13
  CLUS_8               0                22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       14      6     16      0
  3Q GAIN WILD-TYPE     56     80     58     26
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              14                56
  CLUS_2               6                80
  CLUS_3              16                58
  CLUS_4               0                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        2     11     10      1     12      0      0
  3Q GAIN WILD-TYPE     46     35     51     33     35     15      5
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                46
  CLUS_2              11                35
  CLUS_3              10                51
  CLUS_4               1                33
  CLUS_5              12                35
  CLUS_6               0                15
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        3     21      6
  3Q GAIN WILD-TYPE     55     79     54
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                55
  CLUS_2              21                79
  CLUS_3               6                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q GAIN MUTATED        2      3     10      6      7      2
  3Q GAIN WILD-TYPE     22     25     29     62     30     20
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               3                25
  CLUS_3              10                29
  CLUS_4               6                62
  CLUS_5               7                30
  CLUS_6               2                20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       23     11      2
  3Q GAIN WILD-TYPE     91     66     61
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              23                91
  CLUS_2              11                66
  CLUS_3               2                61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        4      4      7      1     10      3      7
  3Q GAIN WILD-TYPE     42     19     42     45     18     26     26
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                42
  CLUS_2               4                19
  CLUS_3               7                42
  CLUS_4               1                45
  CLUS_5              10                18
  CLUS_6               3                26
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        9     11     16
  3Q GAIN WILD-TYPE     98     39     81
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               9                98
  CLUS_2              11                39
  CLUS_3              16                81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       13      6     17      0
  3Q GAIN WILD-TYPE     66     46     83     23
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              13                66
  CLUS_2               6                46
  CLUS_3              17                83
  CLUS_4               0                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        6     13     15
  3Q GAIN WILD-TYPE     77     51     31
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                77
  CLUS_2              13                51
  CLUS_3              15                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3Q GAIN MUTATED        3      1      8      9      1      5      7      0
  3Q GAIN WILD-TYPE     21     31     29     15     10     17     14     22
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               1                31
  CLUS_3               8                29
  CLUS_4               9                15
  CLUS_5               1                10
  CLUS_6               5                17
  CLUS_7               7                14
  CLUS_8               0                22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED       27      7     27      7
  4P GAIN WILD-TYPE     43     79     47     19
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              27                43
  CLUS_2               7                79
  CLUS_3              27                47
  CLUS_4               7                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED       14      9     13      4     26      0      2
  4P GAIN WILD-TYPE     34     37     48     30     21     15      3
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14                34
  CLUS_2               9                37
  CLUS_3              13                48
  CLUS_4               4                30
  CLUS_5              26                21
  CLUS_6               0                15
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       15     35     10
  4P GAIN WILD-TYPE     43     65     50
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2              35                65
  CLUS_3              10                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P GAIN MUTATED        8      7     18     11     13      3
  4P GAIN WILD-TYPE     16     21     21     57     24     19
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2               7                21
  CLUS_3              18                21
  CLUS_4              11                57
  CLUS_5              13                24
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       40     14     14
  4P GAIN WILD-TYPE     74     63     49
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              40                74
  CLUS_2              14                63
  CLUS_3              14                49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED       13      4      8      8     14      6     15
  4P GAIN WILD-TYPE     33     19     41     38     14     23     18
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              13                33
  CLUS_2               4                19
  CLUS_3               8                41
  CLUS_4               8                38
  CLUS_5              14                14
  CLUS_6               6                23
  CLUS_7              15                18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       32     17     17
  4P GAIN WILD-TYPE     75     33     80
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              32                75
  CLUS_2              17                33
  CLUS_3              17                80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED       27     18     18      3
  4P GAIN WILD-TYPE     52     34     82     20
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              27                52
  CLUS_2              18                34
  CLUS_3              18                82
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       25     15     17
  4P GAIN WILD-TYPE     58     49     29
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              25                58
  CLUS_2              15                49
  CLUS_3              17                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4P GAIN MUTATED        6      9      7      7      3     13      8      4
  4P GAIN WILD-TYPE     18     23     30     17      8      9     13     18
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               9                23
  CLUS_3               7                30
  CLUS_4               7                17
  CLUS_5               3                 8
  CLUS_6              13                 9
  CLUS_7               8                13
  CLUS_8               4                18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED       18      8     17      4
  4Q GAIN WILD-TYPE     52     78     57     22
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              18                52
  CLUS_2               8                78
  CLUS_3              17                57
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED        9      8     10      2     17      0      1
  4Q GAIN WILD-TYPE     39     38     51     32     30     15      4
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               9                39
  CLUS_2               8                38
  CLUS_3              10                51
  CLUS_4               2                32
  CLUS_5              17                30
  CLUS_6               0                15
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       11     23      6
  4Q GAIN WILD-TYPE     47     77     54
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2              23                77
  CLUS_3               6                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q GAIN MUTATED        5      7      7      9      9      3
  4Q GAIN WILD-TYPE     19     21     32     59     28     19
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               7                21
  CLUS_3               7                32
  CLUS_4               9                59
  CLUS_5               9                28
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       27     11      9
  4Q GAIN WILD-TYPE     87     66     54
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              27                87
  CLUS_2              11                66
  CLUS_3               9                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED        9      4      6      4      7      5     12
  4Q GAIN WILD-TYPE     37     19     43     42     21     24     21
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               9                37
  CLUS_2               4                19
  CLUS_3               6                43
  CLUS_4               4                42
  CLUS_5               7                21
  CLUS_6               5                24
  CLUS_7              12                21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       20     12     14
  4Q GAIN WILD-TYPE     87     38     83
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              20                87
  CLUS_2              12                38
  CLUS_3              14                83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED       17     13     15      1
  4Q GAIN WILD-TYPE     62     39     85     22
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              17                62
  CLUS_2              13                39
  CLUS_3              15                85
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       14      9     13
  4Q GAIN WILD-TYPE     69     55     33
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              14                69
  CLUS_2               9                55
  CLUS_3              13                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4Q GAIN MUTATED        4      6      4      5      2      8      5      2
  4Q GAIN WILD-TYPE     20     26     33     19      9     14     16     20
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               6                26
  CLUS_3               4                33
  CLUS_4               5                19
  CLUS_5               2                 9
  CLUS_6               8                14
  CLUS_7               5                16
  CLUS_8               2                20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       31     11     48      8
  5P GAIN WILD-TYPE     39     75     26     18
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              31                39
  CLUS_2              11                75
  CLUS_3              48                26
  CLUS_4               8                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED       23     15     24      5     29      1      1
  5P GAIN WILD-TYPE     25     31     37     29     18     14      4
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              23                25
  CLUS_2              15                31
  CLUS_3              24                37
  CLUS_4               5                29
  CLUS_5              29                18
  CLUS_6               1                14
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       19     46     20
  5P GAIN WILD-TYPE     39     54     40
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              19                39
  CLUS_2              46                54
  CLUS_3              20                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P GAIN MUTATED       11      7     25     20     17      5
  5P GAIN WILD-TYPE     13     21     14     48     20     17
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              11                13
  CLUS_2               7                21
  CLUS_3              25                14
  CLUS_4              20                48
  CLUS_5              17                20
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       55     26     17
  5P GAIN WILD-TYPE     59     51     46
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              55                59
  CLUS_2              26                51
  CLUS_3              17                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED       25      5     21     10     17      4     16
  5P GAIN WILD-TYPE     21     18     28     36     11     25     17
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              25                21
  CLUS_2               5                18
  CLUS_3              21                28
  CLUS_4              10                36
  CLUS_5              17                11
  CLUS_6               4                25
  CLUS_7              16                17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       39     21     37
  5P GAIN WILD-TYPE     68     29     60
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              39                68
  CLUS_2              21                29
  CLUS_3              37                60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       39     18     38      2
  5P GAIN WILD-TYPE     40     34     62     21
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              39                40
  CLUS_2              18                34
  CLUS_3              38                62
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       30     25     20
  5P GAIN WILD-TYPE     53     39     26
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              30                53
  CLUS_2              25                39
  CLUS_3              20                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5P GAIN MUTATED       10     14     15     11      3     10      8      4
  5P GAIN WILD-TYPE     14     18     22     13      8     12     13     18
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2              14                18
  CLUS_3              15                22
  CLUS_4              11                13
  CLUS_5               3                 8
  CLUS_6              10                12
  CLUS_7               8                13
  CLUS_8               4                18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       26     11     30      4
  5Q GAIN WILD-TYPE     44     75     44     22
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              26                44
  CLUS_2              11                75
  CLUS_3              30                44
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED       13     13     18      5     20      0      2
  5Q GAIN WILD-TYPE     35     33     43     29     27     15      3
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              13                35
  CLUS_2              13                33
  CLUS_3              18                43
  CLUS_4               5                29
  CLUS_5              20                27
  CLUS_6               0                15
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       14     35     15
  5Q GAIN WILD-TYPE     44     65     45
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              14                44
  CLUS_2              35                65
  CLUS_3              15                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q GAIN MUTATED        8      6     19     15     11      5
  5Q GAIN WILD-TYPE     16     22     20     53     26     17
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2               6                22
  CLUS_3              19                20
  CLUS_4              15                53
  CLUS_5              11                26
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       37     19     14
  5Q GAIN WILD-TYPE     77     58     49
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              37                77
  CLUS_2              19                58
  CLUS_3              14                49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED       18      3     16      8     11      3     11
  5Q GAIN WILD-TYPE     28     20     33     38     17     26     22
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              18                28
  CLUS_2               3                20
  CLUS_3              16                33
  CLUS_4               8                38
  CLUS_5              11                17
  CLUS_6               3                26
  CLUS_7              11                22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       25     16     29
  5Q GAIN WILD-TYPE     82     34     68
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              25                82
  CLUS_2              16                34
  CLUS_3              29                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       25     14     29      2
  5Q GAIN WILD-TYPE     54     38     71     21
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              25                54
  CLUS_2              14                38
  CLUS_3              29                71
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       21     19     14
  5Q GAIN WILD-TYPE     62     45     32
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              21                62
  CLUS_2              19                45
  CLUS_3              14                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5Q GAIN MUTATED        7      8     10     10      2      8      5      4
  5Q GAIN WILD-TYPE     17     24     27     14      9     14     16     18
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               8                24
  CLUS_3              10                27
  CLUS_4              10                14
  CLUS_5               2                 9
  CLUS_6               8                14
  CLUS_7               5                16
  CLUS_8               4                18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       21      3     20      7
  6P GAIN WILD-TYPE     49     83     54     19
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              21                49
  CLUS_2               3                83
  CLUS_3              20                54
  CLUS_4               7                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED       21      7      5      4     13      0      1
  6P GAIN WILD-TYPE     27     39     56     30     34     15      4
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              21                27
  CLUS_2               7                39
  CLUS_3               5                56
  CLUS_4               4                30
  CLUS_5              13                34
  CLUS_6               0                15
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       15     26      4
  6P GAIN WILD-TYPE     43     74     56
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2              26                74
  CLUS_3               4                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P GAIN MUTATED       12      4     12      5      7      5
  6P GAIN WILD-TYPE     12     24     27     63     30     17
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              12                12
  CLUS_2               4                24
  CLUS_3              12                27
  CLUS_4               5                63
  CLUS_5               7                30
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       35      6     10
  6P GAIN WILD-TYPE     79     71     53
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              35                79
  CLUS_2               6                71
  CLUS_3              10                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED       21      3      3      6      6      3      9
  6P GAIN WILD-TYPE     25     20     46     40     22     26     24
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              21                25
  CLUS_2               3                20
  CLUS_3               3                46
  CLUS_4               6                40
  CLUS_5               6                22
  CLUS_6               3                26
  CLUS_7               9                24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       26     12     12
  6P GAIN WILD-TYPE     81     38     85
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              26                81
  CLUS_2              12                38
  CLUS_3              12                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       23     13     12      2
  6P GAIN WILD-TYPE     56     39     88     21
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              23                56
  CLUS_2              13                39
  CLUS_3              12                88
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       19     11     12
  6P GAIN WILD-TYPE     64     53     34
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              19                64
  CLUS_2              11                53
  CLUS_3              12                34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6P GAIN MUTATED        5     11      4     10      1      6      3      2
  6P GAIN WILD-TYPE     19     21     33     14     10     16     18     20
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2              11                21
  CLUS_3               4                33
  CLUS_4              10                14
  CLUS_5               1                10
  CLUS_6               6                16
  CLUS_7               3                18
  CLUS_8               2                20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       19      5     18      8
  6Q GAIN WILD-TYPE     51     81     56     18
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              19                51
  CLUS_2               5                81
  CLUS_3              18                56
  CLUS_4               8                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED       21      8      6      3     10      1      1
  6Q GAIN WILD-TYPE     27     38     55     31     37     14      4
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              21                27
  CLUS_2               8                38
  CLUS_3               6                55
  CLUS_4               3                31
  CLUS_5              10                37
  CLUS_6               1                14
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       16     21      6
  6Q GAIN WILD-TYPE     42     79     54
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2              21                79
  CLUS_3               6                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q GAIN MUTATED       10      6     11      7      6      3
  6Q GAIN WILD-TYPE     14     22     28     61     31     19
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               6                22
  CLUS_3              11                28
  CLUS_4               7                61
  CLUS_5               6                31
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       35      7      8
  6Q GAIN WILD-TYPE     79     70     55
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              35                79
  CLUS_2               7                70
  CLUS_3               8                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED       21      5      4      6      5      3      6
  6Q GAIN WILD-TYPE     25     18     45     40     23     26     27
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              21                25
  CLUS_2               5                18
  CLUS_3               4                45
  CLUS_4               6                40
  CLUS_5               5                23
  CLUS_6               3                26
  CLUS_7               6                27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       26     11     12
  6Q GAIN WILD-TYPE     81     39     85
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              26                81
  CLUS_2              11                39
  CLUS_3              12                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       25     10     12      2
  6Q GAIN WILD-TYPE     54     42     88     21
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              25                54
  CLUS_2              10                42
  CLUS_3              12                88
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       21     10     12
  6Q GAIN WILD-TYPE     62     54     34
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              21                62
  CLUS_2              10                54
  CLUS_3              12                34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6Q GAIN MUTATED        7     13      4      8      1      5      3      2
  6Q GAIN WILD-TYPE     17     19     33     16     10     17     18     20
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2              13                19
  CLUS_3               4                33
  CLUS_4               8                16
  CLUS_5               1                10
  CLUS_6               5                17
  CLUS_7               3                18
  CLUS_8               2                20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       29     10     38      5
  7P GAIN WILD-TYPE     41     76     36     21
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              29                41
  CLUS_2              10                76
  CLUS_3              38                36
  CLUS_4               5                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED       21     13     12      9     24      1      2
  7P GAIN WILD-TYPE     27     33     49     25     23     14      3
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                27
  CLUS_2              13                33
  CLUS_3              12                49
  CLUS_4               9                25
  CLUS_5              24                23
  CLUS_6               1                14
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       22     43     12
  7P GAIN WILD-TYPE     36     57     48
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              22                36
  CLUS_2              43                57
  CLUS_3              12                48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P GAIN MUTATED       13      8     20     14     15      7
  7P GAIN WILD-TYPE     11     20     19     54     22     15
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              13                11
  CLUS_2               8                20
  CLUS_3              20                19
  CLUS_4              14                54
  CLUS_5              15                22
  CLUS_6               7                15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       49     15     18
  7P GAIN WILD-TYPE     65     62     45
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              49                65
  CLUS_2              15                62
  CLUS_3              18                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED       21      6      9     12     14      7     13
  7P GAIN WILD-TYPE     25     17     40     34     14     22     20
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                25
  CLUS_2               6                17
  CLUS_3               9                40
  CLUS_4              12                34
  CLUS_5              14                14
  CLUS_6               7                22
  CLUS_7              13                20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       35     20     25
  7P GAIN WILD-TYPE     72     30     72
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              35                72
  CLUS_2              20                30
  CLUS_3              25                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       28     21     25      6
  7P GAIN WILD-TYPE     51     31     75     17
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              28                51
  CLUS_2              21                31
  CLUS_3              25                75
  CLUS_4               6                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       25     16     25
  7P GAIN WILD-TYPE     58     48     21
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              25                58
  CLUS_2              16                48
  CLUS_3              25                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7P GAIN MUTATED        9     11      6     15      2      4     12      7
  7P GAIN WILD-TYPE     15     21     31      9      9     18      9     15
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               9                15
  CLUS_2              11                21
  CLUS_3               6                31
  CLUS_4              15                 9
  CLUS_5               2                 9
  CLUS_6               4                18
  CLUS_7              12                 9
  CLUS_8               7                15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       19     10     35      4
  7Q GAIN WILD-TYPE     51     76     39     22
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              19                51
  CLUS_2              10                76
  CLUS_3              35                39
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED       20     13     10      4     19      0      2
  7Q GAIN WILD-TYPE     28     33     51     30     28     15      3
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              20                28
  CLUS_2              13                33
  CLUS_3              10                51
  CLUS_4               4                30
  CLUS_5              19                28
  CLUS_6               0                15
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       16     35     10
  7Q GAIN WILD-TYPE     42     65     50
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2              35                65
  CLUS_3              10                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q GAIN MUTATED       10      8     18     10     12      3
  7Q GAIN WILD-TYPE     14     20     21     58     25     19
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               8                20
  CLUS_3              18                21
  CLUS_4              10                58
  CLUS_5              12                25
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       44     11     13
  7Q GAIN WILD-TYPE     70     66     50
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              44                70
  CLUS_2              11                66
  CLUS_3              13                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED       18      6      8      9     11      4     12
  7Q GAIN WILD-TYPE     28     17     41     37     17     25     21
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              18                28
  CLUS_2               6                17
  CLUS_3               8                41
  CLUS_4               9                37
  CLUS_5              11                17
  CLUS_6               4                25
  CLUS_7              12                21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       28     20     20
  7Q GAIN WILD-TYPE     79     30     77
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              28                79
  CLUS_2              20                30
  CLUS_3              20                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       25     21     19      3
  7Q GAIN WILD-TYPE     54     31     81     20
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              25                54
  CLUS_2              21                31
  CLUS_3              19                81
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       20     11     24
  7Q GAIN WILD-TYPE     63     53     22
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              20                63
  CLUS_2              11                53
  CLUS_3              24                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7Q GAIN MUTATED        7     10      5     12      1      4     12      4
  7Q GAIN WILD-TYPE     17     22     32     12     10     18      9     18
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2              10                22
  CLUS_3               5                32
  CLUS_4              12                12
  CLUS_5               1                10
  CLUS_6               4                18
  CLUS_7              12                 9
  CLUS_8               4                18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       20     13     17      2
  8P GAIN WILD-TYPE     50     73     57     24
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              20                50
  CLUS_2              13                73
  CLUS_3              17                57
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        7     11     13      6     13      1      1
  8P GAIN WILD-TYPE     41     35     48     28     34     14      4
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               7                41
  CLUS_2              11                35
  CLUS_3              13                48
  CLUS_4               6                28
  CLUS_5              13                34
  CLUS_6               1                14
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       12     22     11
  8P GAIN WILD-TYPE     46     78     49
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                46
  CLUS_2              22                78
  CLUS_3              11                49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P GAIN MUTATED        3      6     10     13     10      3
  8P GAIN WILD-TYPE     21     22     29     55     27     19
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               6                22
  CLUS_3              10                29
  CLUS_4              13                55
  CLUS_5              10                27
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       26     14     12
  8P GAIN WILD-TYPE     88     63     51
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              26                88
  CLUS_2              14                63
  CLUS_3              12                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        9      2     12      9     11      2      7
  8P GAIN WILD-TYPE     37     21     37     37     17     27     26
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                37
  CLUS_2               2                21
  CLUS_3              12                37
  CLUS_4               9                37
  CLUS_5              11                17
  CLUS_6               2                27
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       18     10     24
  8P GAIN WILD-TYPE     89     40     73
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              18                89
  CLUS_2              10                40
  CLUS_3              24                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       16      7     26      3
  8P GAIN WILD-TYPE     63     45     74     20
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              16                63
  CLUS_2               7                45
  CLUS_3              26                74
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       15     16     13
  8P GAIN WILD-TYPE     68     48     33
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              15                68
  CLUS_2              16                48
  CLUS_3              13                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8P GAIN MUTATED        2      6      7     12      2      5      6      4
  8P GAIN WILD-TYPE     22     26     30     12      9     17     15     18
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               6                26
  CLUS_3               7                30
  CLUS_4              12                12
  CLUS_5               2                 9
  CLUS_6               5                17
  CLUS_7               6                15
  CLUS_8               4                18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       21     15     24      5
  8Q GAIN WILD-TYPE     49     71     50     21
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              21                49
  CLUS_2              15                71
  CLUS_3              24                50
  CLUS_4               5                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        7     11     17      9     18      1      2
  8Q GAIN WILD-TYPE     41     35     44     25     29     14      3
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                41
  CLUS_2              11                35
  CLUS_3              17                44
  CLUS_4               9                25
  CLUS_5              18                29
  CLUS_6               1                14
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       12     30     12
  8Q GAIN WILD-TYPE     46     70     48
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              12                46
  CLUS_2              30                70
  CLUS_3              12                48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q GAIN MUTATED        3      6     15     14      8      8
  8Q GAIN WILD-TYPE     21     22     24     54     29     14
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               6                22
  CLUS_3              15                24
  CLUS_4              14                54
  CLUS_5               8                29
  CLUS_6               8                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       29     19     17
  8Q GAIN WILD-TYPE     85     58     46
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              29                85
  CLUS_2              19                58
  CLUS_3              17                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        7      4     13     12     13      5     11
  8Q GAIN WILD-TYPE     39     19     36     34     15     24     22
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                39
  CLUS_2               4                19
  CLUS_3              13                36
  CLUS_4              12                34
  CLUS_5              13                15
  CLUS_6               5                24
  CLUS_7              11                22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       22     14     28
  8Q GAIN WILD-TYPE     85     36     69
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              22                85
  CLUS_2              14                36
  CLUS_3              28                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       18     11     30      5
  8Q GAIN WILD-TYPE     61     41     70     18
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              18                61
  CLUS_2              11                41
  CLUS_3              30                70
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       16     19     18
  8Q GAIN WILD-TYPE     67     45     28
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              16                67
  CLUS_2              19                45
  CLUS_3              18                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8Q GAIN MUTATED        3      7      9     12      3      5      8      6
  8Q GAIN WILD-TYPE     21     25     28     12      8     17     13     16
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               7                25
  CLUS_3               9                28
  CLUS_4              12                12
  CLUS_5               3                 8
  CLUS_6               5                17
  CLUS_7               8                13
  CLUS_8               6                16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       28      8     14      7
  9P GAIN WILD-TYPE     42     78     60     19
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              28                42
  CLUS_2               8                78
  CLUS_3              14                60
  CLUS_4               7                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED       20      9      8      5     14      0      1
  9P GAIN WILD-TYPE     28     37     53     29     33     15      4
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              20                28
  CLUS_2               9                37
  CLUS_3               8                53
  CLUS_4               5                29
  CLUS_5              14                33
  CLUS_6               0                15
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       16     29      7
  9P GAIN WILD-TYPE     42     71     53
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2              29                71
  CLUS_3               7                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P GAIN MUTATED       12      3     16      8      8      5
  9P GAIN WILD-TYPE     12     25     23     60     29     17
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              12                12
  CLUS_2               3                25
  CLUS_3              16                23
  CLUS_4               8                60
  CLUS_5               8                29
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       36     10     11
  9P GAIN WILD-TYPE     78     67     52
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              36                78
  CLUS_2              10                67
  CLUS_3              11                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED       18      8      6      3      9      4      9
  9P GAIN WILD-TYPE     28     15     43     43     19     25     24
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              18                28
  CLUS_2               8                15
  CLUS_3               6                43
  CLUS_4               3                43
  CLUS_5               9                19
  CLUS_6               4                25
  CLUS_7               9                24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       30     12     15
  9P GAIN WILD-TYPE     77     38     82
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              30                77
  CLUS_2              12                38
  CLUS_3              15                82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       29     10     16      2
  9P GAIN WILD-TYPE     50     42     84     21
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              29                50
  CLUS_2              10                42
  CLUS_3              16                84
  CLUS_4               2                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       21     15     14
  9P GAIN WILD-TYPE     62     49     32
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21                62
  CLUS_2              15                49
  CLUS_3              14                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9P GAIN MUTATED        8     10      5      8      2      8      6      3
  9P GAIN WILD-TYPE     16     22     32     16      9     14     15     19
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2              10                22
  CLUS_3               5                32
  CLUS_4               8                16
  CLUS_5               2                 9
  CLUS_6               8                14
  CLUS_7               6                15
  CLUS_8               3                19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       31      9     23     10
  9Q GAIN WILD-TYPE     39     77     51     16
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              31                39
  CLUS_2               9                77
  CLUS_3              23                51
  CLUS_4              10                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED       23     14     11      5     19      0      1
  9Q GAIN WILD-TYPE     25     32     50     29     28     15      4
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              23                25
  CLUS_2              14                32
  CLUS_3              11                50
  CLUS_4               5                29
  CLUS_5              19                28
  CLUS_6               0                15
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       19     38      9
  9Q GAIN WILD-TYPE     39     62     51
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              19                39
  CLUS_2              38                62
  CLUS_3               9                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q GAIN MUTATED       13      7     18     10     13      5
  9Q GAIN WILD-TYPE     11     21     21     58     24     17
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              13                11
  CLUS_2               7                21
  CLUS_3              18                21
  CLUS_4              10                58
  CLUS_5              13                24
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       48     12     13
  9Q GAIN WILD-TYPE     66     65     50
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              48                66
  CLUS_2              12                65
  CLUS_3              13                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED       22     10     10      5     14      2     10
  9Q GAIN WILD-TYPE     24     13     39     41     14     27     23
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              22                24
  CLUS_2              10                13
  CLUS_3              10                39
  CLUS_4               5                41
  CLUS_5              14                14
  CLUS_6               2                27
  CLUS_7              10                23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       35     18     20
  9Q GAIN WILD-TYPE     72     32     77
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              35                72
  CLUS_2              18                32
  CLUS_3              20                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       34     17     21      1
  9Q GAIN WILD-TYPE     45     35     79     22
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              34                45
  CLUS_2              17                35
  CLUS_3              21                79
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       25     17     23
  9Q GAIN WILD-TYPE     58     47     23
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              25                58
  CLUS_2              17                47
  CLUS_3              23                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9Q GAIN MUTATED        9     15      9     13      1      7      9      2
  9Q GAIN WILD-TYPE     15     17     28     11     10     15     12     20
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               9                15
  CLUS_2              15                17
  CLUS_3               9                28
  CLUS_4              13                11
  CLUS_5               1                10
  CLUS_6               7                15
  CLUS_7               9                12
  CLUS_8               2                20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED       12      3      7      1
  10P GAIN WILD-TYPE     58     83     67     25
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               12                 58
  CLUS_2                3                 83
  CLUS_3                7                 67
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        4      5      2      2      8      0      2
  10P GAIN WILD-TYPE     44     41     59     32     39     15      3
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                5                 41
  CLUS_3                2                 59
  CLUS_4                2                 32
  CLUS_5                8                 39
  CLUS_6                0                 15
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        6     15      2
  10P GAIN WILD-TYPE     52     85     58
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 52
  CLUS_2               15                 85
  CLUS_3                2                 58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P GAIN MUTATED        3      3      4      6      5      2
  10P GAIN WILD-TYPE     21     25     35     62     32     20
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                3                 25
  CLUS_3                4                 35
  CLUS_4                6                 62
  CLUS_5                5                 32
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       15      4      4
  10P GAIN WILD-TYPE     99     73     59
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               15                 99
  CLUS_2                4                 73
  CLUS_3                4                 59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        4      2      2      2      6      2      5
  10P GAIN WILD-TYPE     42     21     47     44     22     27     28
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                2                 21
  CLUS_3                2                 47
  CLUS_4                2                 44
  CLUS_5                6                 22
  CLUS_6                2                 27
  CLUS_7                5                 28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        8      7      7
  10P GAIN WILD-TYPE     99     43     90
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                8                 99
  CLUS_2                7                 43
  CLUS_3                7                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        7      7      7      1
  10P GAIN WILD-TYPE     72     45     93     22
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                 72
  CLUS_2                7                 45
  CLUS_3                7                 93
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        4      5      9
  10P GAIN WILD-TYPE     79     59     37
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                 79
  CLUS_2                5                 59
  CLUS_3                9                 37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10P GAIN MUTATED        3      0      2      6      0      2      3      2
  10P GAIN WILD-TYPE     21     32     35     18     11     20     18     20
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 32
  CLUS_3                2                 35
  CLUS_4                6                 18
  CLUS_5                0                 11
  CLUS_6                2                 20
  CLUS_7                3                 18
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        4      3      3      2
  10Q GAIN WILD-TYPE     66     83     71     24
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                 66
  CLUS_2                3                 83
  CLUS_3                3                 71
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        3      4      0      2      2      0      1
  10Q GAIN WILD-TYPE     45     42     61     32     45     15      4
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                4                 42
  CLUS_3                0                 61
  CLUS_4                2                 32
  CLUS_5                2                 45
  CLUS_6                0                 15
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        3      9      0
  10Q GAIN WILD-TYPE     55     91     60
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                9                 91
  CLUS_3                0                 60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q GAIN MUTATED        1      2      3      2      3      1
  10Q GAIN WILD-TYPE     23     26     36     66     34     21
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                2                 26
  CLUS_3                3                 36
  CLUS_4                2                 66
  CLUS_5                3                 34
  CLUS_6                1                 21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        9      1      2
  10Q GAIN WILD-TYPE    105     76     61
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                9                105
  CLUS_2                1                 76
  CLUS_3                2                 61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        2      2      0      3      4      1      0
  10Q GAIN WILD-TYPE     44     21     49     43     24     28     33
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                2                 21
  CLUS_3                0                 49
  CLUS_4                3                 43
  CLUS_5                4                 24
  CLUS_6                1                 28
  CLUS_7                0                 33
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        6      3      2
  10Q GAIN WILD-TYPE    101     47     95
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                101
  CLUS_2                3                 47
  CLUS_3                2                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        6      2      2      1
  10Q GAIN WILD-TYPE     73     50     98     22
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                 73
  CLUS_2                2                 50
  CLUS_3                2                 98
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        4      1      6
  10Q GAIN WILD-TYPE     79     63     40
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                 79
  CLUS_2                1                 63
  CLUS_3                6                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10Q GAIN MUTATED        3      1      0      2      0      1      2      2
  10Q GAIN WILD-TYPE     21     31     37     22     11     21     19     20
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                1                 31
  CLUS_3                0                 37
  CLUS_4                2                 22
  CLUS_5                0                 11
  CLUS_6                1                 21
  CLUS_7                2                 19
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        9      4     10      0
  11P GAIN WILD-TYPE     61     82     64     26
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 61
  CLUS_2                4                 82
  CLUS_3               10                 64
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        5      5      1      1      9      1      1
  11P GAIN WILD-TYPE     43     41     60     33     38     14      4
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 43
  CLUS_2                5                 41
  CLUS_3                1                 60
  CLUS_4                1                 33
  CLUS_5                9                 38
  CLUS_6                1                 14
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        5     14      3
  11P GAIN WILD-TYPE     53     86     57
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 53
  CLUS_2               14                 86
  CLUS_3                3                 57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P GAIN MUTATED        2      4      8      4      2      2
  11P GAIN WILD-TYPE     22     24     31     64     35     20
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                4                 24
  CLUS_3                8                 31
  CLUS_4                4                 64
  CLUS_5                2                 35
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       14      3      5
  11P GAIN WILD-TYPE    100     74     58
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               14                100
  CLUS_2                3                 74
  CLUS_3                5                 58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        6      0      1      2      7      2      4
  11P GAIN WILD-TYPE     40     23     48     44     21     27     29
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                 40
  CLUS_2                0                 23
  CLUS_3                1                 48
  CLUS_4                2                 44
  CLUS_5                7                 21
  CLUS_6                2                 27
  CLUS_7                4                 29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        9      7      7
  11P GAIN WILD-TYPE     98     43     90
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 98
  CLUS_2                7                 43
  CLUS_3                7                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        9      6      7      1
  11P GAIN WILD-TYPE     70     46     93     22
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 70
  CLUS_2                6                 46
  CLUS_3                7                 93
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        6      4      8
  11P GAIN WILD-TYPE     77     60     38
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                 77
  CLUS_2                4                 60
  CLUS_3                8                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11P GAIN MUTATED        2      3      1      6      0      2      3      1
  11P GAIN WILD-TYPE     22     29     36     18     11     20     18     21
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                3                 29
  CLUS_3                1                 36
  CLUS_4                6                 18
  CLUS_5                0                 11
  CLUS_6                2                 20
  CLUS_7                3                 18
  CLUS_8                1                 21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        7      3     12      0
  11Q GAIN WILD-TYPE     63     83     62     26
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                7                 63
  CLUS_2                3                 83
  CLUS_3               12                 62
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        3      4      3      1      9      1      1
  11Q GAIN WILD-TYPE     45     42     58     33     38     14      4
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                4                 42
  CLUS_3                3                 58
  CLUS_4                1                 33
  CLUS_5                9                 38
  CLUS_6                1                 14
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        6     10      6
  11Q GAIN WILD-TYPE     52     90     54
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                 52
  CLUS_2               10                 90
  CLUS_3                6                 54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q GAIN MUTATED        3      3      7      6      1      2
  11Q GAIN WILD-TYPE     21     25     32     62     36     20
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                3                 25
  CLUS_3                7                 32
  CLUS_4                6                 62
  CLUS_5                1                 36
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       12      5      5
  11Q GAIN WILD-TYPE    102     72     58
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               12                102
  CLUS_2                5                 72
  CLUS_3                5                 58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        4      0      2      2      7      3      4
  11Q GAIN WILD-TYPE     42     23     47     44     21     26     29
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 23
  CLUS_3                2                 47
  CLUS_4                2                 44
  CLUS_5                7                 21
  CLUS_6                3                 26
  CLUS_7                4                 29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        9      5      8
  11Q GAIN WILD-TYPE     98     45     89
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                 98
  CLUS_2                5                 45
  CLUS_3                8                 89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        8      5      8      1
  11Q GAIN WILD-TYPE     71     47     92     22
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                8                 71
  CLUS_2                5                 47
  CLUS_3                8                 92
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        5      6      6
  11Q GAIN WILD-TYPE     78     58     40
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 78
  CLUS_2                6                 58
  CLUS_3                6                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11Q GAIN MUTATED        1      2      3      3      1      2      4      1
  11Q GAIN WILD-TYPE     23     30     34     21     10     20     17     21
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                2                 30
  CLUS_3                3                 34
  CLUS_4                3                 21
  CLUS_5                1                 10
  CLUS_6                2                 20
  CLUS_7                4                 17
  CLUS_8                1                 21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        7      7     28      1
  12P GAIN WILD-TYPE     63     79     46     25
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                 63
  CLUS_2                7                 79
  CLUS_3               28                 46
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        9     10      4      8     12      0      0
  12P GAIN WILD-TYPE     39     36     57     26     35     15      5
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 39
  CLUS_2               10                 36
  CLUS_3                4                 57
  CLUS_4                8                 26
  CLUS_5               12                 35
  CLUS_6                0                 15
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       12     25      5
  12P GAIN WILD-TYPE     46     75     55
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               12                 46
  CLUS_2               25                 75
  CLUS_3                5                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P GAIN MUTATED        5      5     13      5      9      5
  12P GAIN WILD-TYPE     19     23     26     63     28     17
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                5                 23
  CLUS_3               13                 26
  CLUS_4                5                 63
  CLUS_5                9                 28
  CLUS_6                5                 17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       19      4     20
  12P GAIN WILD-TYPE     95     73     43
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               19                 95
  CLUS_2                4                 73
  CLUS_3               20                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        8      1      4     13      9      0      8
  12P GAIN WILD-TYPE     38     22     45     33     19     29     25
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                8                 38
  CLUS_2                1                 22
  CLUS_3                4                 45
  CLUS_4               13                 33
  CLUS_5                9                 19
  CLUS_6                0                 29
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       23      9     10
  12P GAIN WILD-TYPE     84     41     87
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               23                 84
  CLUS_2                9                 41
  CLUS_3               10                 87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       15     13     10      4
  12P GAIN WILD-TYPE     64     39     90     19
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               15                 64
  CLUS_2               13                 39
  CLUS_3               10                 90
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       18      6     12
  12P GAIN WILD-TYPE     65     58     34
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               18                 65
  CLUS_2                6                 58
  CLUS_3               12                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12P GAIN MUTATED        1      8      2      6      0      3     10      6
  12P GAIN WILD-TYPE     23     24     35     18     11     19     11     16
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                8                 24
  CLUS_3                2                 35
  CLUS_4                6                 18
  CLUS_5                0                 11
  CLUS_6                3                 19
  CLUS_7               10                 11
  CLUS_8                6                 16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        7      6     20      1
  12Q GAIN WILD-TYPE     63     80     54     25
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                 63
  CLUS_2                6                 80
  CLUS_3               20                 54
  CLUS_4                1                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        9      8      2      5      9      0      1
  12Q GAIN WILD-TYPE     39     38     59     29     38     15      4
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                9                 39
  CLUS_2                8                 38
  CLUS_3                2                 59
  CLUS_4                5                 29
  CLUS_5                9                 38
  CLUS_6                0                 15
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       10     20      3
  12Q GAIN WILD-TYPE     48     80     57
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               10                 48
  CLUS_2               20                 80
  CLUS_3                3                 57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q GAIN MUTATED        4      5      9      4      7      4
  12Q GAIN WILD-TYPE     20     23     30     64     30     18
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                5                 23
  CLUS_3                9                 30
  CLUS_4                4                 64
  CLUS_5                7                 30
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       18      3     13
  12Q GAIN WILD-TYPE     96     74     50
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               18                 96
  CLUS_2                3                 74
  CLUS_3               13                 50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        9      3      2      8      7      1      4
  12Q GAIN WILD-TYPE     37     20     47     38     21     28     29
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                9                 37
  CLUS_2                3                 20
  CLUS_3                2                 47
  CLUS_4                8                 38
  CLUS_5                7                 21
  CLUS_6                1                 28
  CLUS_7                4                 29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       17      9      7
  12Q GAIN WILD-TYPE     90     41     90
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               17                 90
  CLUS_2                9                 41
  CLUS_3                7                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       12     11      7      3
  12Q GAIN WILD-TYPE     67     41     93     20
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               12                 67
  CLUS_2               11                 41
  CLUS_3                7                 93
  CLUS_4                3                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       13      5     11
  12Q GAIN WILD-TYPE     70     59     35
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               13                 70
  CLUS_2                5                 59
  CLUS_3               11                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12Q GAIN MUTATED        4      7      1      5      0      1      7      4
  12Q GAIN WILD-TYPE     20     25     36     19     11     21     14     18
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                7                 25
  CLUS_3                1                 36
  CLUS_4                5                 19
  CLUS_5                0                 11
  CLUS_6                1                 21
  CLUS_7                7                 14
  CLUS_8                4                 18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED       11      2      2      0
  13Q GAIN WILD-TYPE     59     84     72     26
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               11                 59
  CLUS_2                2                 84
  CLUS_3                2                 72
  CLUS_4                0                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q GAIN MUTATED        3      0      6      2      3      0      1
  13Q GAIN WILD-TYPE     45     46     55     32     44     15      4
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                0                 46
  CLUS_3                6                 55
  CLUS_4                2                 32
  CLUS_5                3                 44
  CLUS_6                0                 15
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      5      5
  13Q GAIN WILD-TYPE     56     95     55
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 56
  CLUS_2                5                 95
  CLUS_3                5                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q GAIN MUTATED        1      0      3      7      1      0
  13Q GAIN WILD-TYPE     23     28     36     61     36     22
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                0                 28
  CLUS_3                3                 36
  CLUS_4                7                 61
  CLUS_5                1                 36
  CLUS_6                0                 22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        6      8      1
  13Q GAIN WILD-TYPE    108     69     62
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                108
  CLUS_2                8                 69
  CLUS_3                1                 62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q GAIN MUTATED        3      0      4      0      1      4      3
  13Q GAIN WILD-TYPE     43     23     45     46     27     25     30
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 23
  CLUS_3                4                 45
  CLUS_4                0                 46
  CLUS_5                1                 27
  CLUS_6                4                 25
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        6      1      7
  13Q GAIN WILD-TYPE    101     49     90
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                101
  CLUS_2                1                 49
  CLUS_3                7                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        4      2      8      0
  13Q GAIN WILD-TYPE     75     50     92     23
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 75
  CLUS_2                2                 50
  CLUS_3                8                 92
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        5      6      2
  13Q GAIN WILD-TYPE     78     58     44
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                 78
  CLUS_2                6                 58
  CLUS_3                2                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  13Q GAIN MUTATED        2      1      3      1      3      2      0      1
  13Q GAIN WILD-TYPE     22     31     34     23      8     20     21     21
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                1                 31
  CLUS_3                3                 34
  CLUS_4                1                 23
  CLUS_5                3                  8
  CLUS_6                2                 20
  CLUS_7                0                 21
  CLUS_8                1                 21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       22     10     22      3
  14Q GAIN WILD-TYPE     48     76     52     23
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               22                 48
  CLUS_2               10                 76
  CLUS_3               22                 52
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED       11      7     13      5     19      1      1
  14Q GAIN WILD-TYPE     37     39     48     29     28     14      4
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               11                 37
  CLUS_2                7                 39
  CLUS_3               13                 48
  CLUS_4                5                 29
  CLUS_5               19                 28
  CLUS_6                1                 14
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       11     32      9
  14Q GAIN WILD-TYPE     47     68     51
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               32                 68
  CLUS_3                9                 51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q GAIN MUTATED        9      5     19     10      6      3
  14Q GAIN WILD-TYPE     15     23     20     58     31     19
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                5                 23
  CLUS_3               19                 20
  CLUS_4               10                 58
  CLUS_5                6                 31
  CLUS_6                3                 19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       31     15     11
  14Q GAIN WILD-TYPE     83     62     52
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               31                 83
  CLUS_2               15                 62
  CLUS_3               11                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED       10      3     12      6     16      3      7
  14Q GAIN WILD-TYPE     36     20     37     40     12     26     26
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                 36
  CLUS_2                3                 20
  CLUS_3               12                 37
  CLUS_4                6                 40
  CLUS_5               16                 12
  CLUS_6                3                 26
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       24     13     20
  14Q GAIN WILD-TYPE     83     37     77
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               24                 83
  CLUS_2               13                 37
  CLUS_3               20                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       19     14     20      4
  14Q GAIN WILD-TYPE     60     38     80     19
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               19                 60
  CLUS_2               14                 38
  CLUS_3               20                 80
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       16     17     15
  14Q GAIN WILD-TYPE     67     47     31
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               16                 67
  CLUS_2               17                 47
  CLUS_3               15                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  14Q GAIN MUTATED        4      5     10      7      2      7      8      5
  14Q GAIN WILD-TYPE     20     27     27     17      9     15     13     17
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                5                 27
  CLUS_3               10                 27
  CLUS_4                7                 17
  CLUS_5                2                  9
  CLUS_6                7                 15
  CLUS_7                8                 13
  CLUS_8                5                 17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       23      6     29      5
  15Q GAIN WILD-TYPE     47     80     45     21
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               23                 47
  CLUS_2                6                 80
  CLUS_3               29                 45
  CLUS_4                5                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED        9     10     20      6     14      1      3
  15Q GAIN WILD-TYPE     39     36     41     28     33     14      2
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                9                 39
  CLUS_2               10                 36
  CLUS_3               20                 41
  CLUS_4                6                 28
  CLUS_5               14                 33
  CLUS_6                1                 14
  CLUS_7                3                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       13     25     13
  15Q GAIN WILD-TYPE     45     75     47
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               25                 75
  CLUS_3               13                 47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q GAIN MUTATED        5      7     12     16      7      4
  15Q GAIN WILD-TYPE     19     21     27     52     30     18
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                7                 21
  CLUS_3               12                 27
  CLUS_4               16                 52
  CLUS_5                7                 30
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       27     25     11
  15Q GAIN WILD-TYPE     87     52     52
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               27                 87
  CLUS_2               25                 52
  CLUS_3               11                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED       12      2     19      9     10      5      6
  15Q GAIN WILD-TYPE     34     21     30     37     18     24     27
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               12                 34
  CLUS_2                2                 21
  CLUS_3               19                 30
  CLUS_4                9                 37
  CLUS_5               10                 18
  CLUS_6                5                 24
  CLUS_7                6                 27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       21     11     29
  15Q GAIN WILD-TYPE     86     39     68
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               21                 86
  CLUS_2               11                 39
  CLUS_3               29                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       16     12     29      4
  15Q GAIN WILD-TYPE     63     40     71     19
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               16                 63
  CLUS_2               12                 40
  CLUS_3               29                 71
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       13     23     12
  15Q GAIN WILD-TYPE     70     41     34
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               13                 70
  CLUS_2               23                 41
  CLUS_3               12                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  15Q GAIN MUTATED        1      5     15      9      2      4      7      5
  15Q GAIN WILD-TYPE     23     27     22     15      9     18     14     17
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                5                 27
  CLUS_3               15                 22
  CLUS_4                9                 15
  CLUS_5                2                  9
  CLUS_6                4                 18
  CLUS_7                7                 14
  CLUS_8                5                 17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       17      2     14      7
  16P GAIN WILD-TYPE     53     84     60     19
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               17                 53
  CLUS_2                2                 84
  CLUS_3               14                 60
  CLUS_4                7                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED       13      4      7      5      8      1      2
  16P GAIN WILD-TYPE     35     42     54     29     39     14      3
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               13                 35
  CLUS_2                4                 42
  CLUS_3                7                 54
  CLUS_4                5                 29
  CLUS_5                8                 39
  CLUS_6                1                 14
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        8     22      4
  16P GAIN WILD-TYPE     50     78     56
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                8                 50
  CLUS_2               22                 78
  CLUS_3                4                 56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P GAIN MUTATED        5      4     10      5      6      4
  16P GAIN WILD-TYPE     19     24     29     63     31     18
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                4                 24
  CLUS_3               10                 29
  CLUS_4                5                 63
  CLUS_5                6                 31
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       24      9      7
  16P GAIN WILD-TYPE     90     68     56
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               24                 90
  CLUS_2                9                 68
  CLUS_3                7                 56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED       11      2      5      9      6      4      3
  16P GAIN WILD-TYPE     35     21     44     37     22     25     30
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               11                 35
  CLUS_2                2                 21
  CLUS_3                5                 44
  CLUS_4                9                 37
  CLUS_5                6                 22
  CLUS_6                4                 25
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       19      7     14
  16P GAIN WILD-TYPE     88     43     83
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               19                 88
  CLUS_2                7                 43
  CLUS_3               14                 83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       17      5     16      2
  16P GAIN WILD-TYPE     62     47     84     21
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               17                 62
  CLUS_2                5                 47
  CLUS_3               16                 84
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       15     13      8
  16P GAIN WILD-TYPE     68     51     38
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               15                 68
  CLUS_2               13                 51
  CLUS_3                8                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16P GAIN MUTATED        5      8      6      8      1      3      1      4
  16P GAIN WILD-TYPE     19     24     31     16     10     19     20     18
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                8                 24
  CLUS_3                6                 31
  CLUS_4                8                 16
  CLUS_5                1                 10
  CLUS_6                3                 19
  CLUS_7                1                 20
  CLUS_8                4                 18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       10      2      5      4
  16Q GAIN WILD-TYPE     60     84     69     22
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                 60
  CLUS_2                2                 84
  CLUS_3                5                 69
  CLUS_4                4                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        5      3      2      3      8      0      0
  16Q GAIN WILD-TYPE     43     43     59     31     39     15      5
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 43
  CLUS_2                3                 43
  CLUS_3                2                 59
  CLUS_4                3                 31
  CLUS_5                8                 39
  CLUS_6                0                 15
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        4     13      1
  16Q GAIN WILD-TYPE     54     87     59
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 54
  CLUS_2               13                 87
  CLUS_3                1                 59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q GAIN MUTATED        4      1      8      1      2      2
  16Q GAIN WILD-TYPE     20     27     31     67     35     20
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                1                 27
  CLUS_3                8                 31
  CLUS_4                1                 67
  CLUS_5                2                 35
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       15      2      4
  16Q GAIN WILD-TYPE     99     75     59
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               15                 99
  CLUS_2                2                 75
  CLUS_3                4                 59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        5      1      1      4      4      1      5
  16Q GAIN WILD-TYPE     41     22     48     42     24     28     28
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 41
  CLUS_2                1                 22
  CLUS_3                1                 48
  CLUS_4                4                 42
  CLUS_5                4                 24
  CLUS_6                1                 28
  CLUS_7                5                 28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       10      5      6
  16Q GAIN WILD-TYPE     97     45     91
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                 97
  CLUS_2                5                 45
  CLUS_3                6                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        7      4      8      2
  16Q GAIN WILD-TYPE     72     48     92     21
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                7                 72
  CLUS_2                4                 48
  CLUS_3                8                 92
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        9      6      3
  16Q GAIN WILD-TYPE     74     58     43
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                9                 74
  CLUS_2                6                 58
  CLUS_3                3                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16Q GAIN MUTATED        2      3      1      6      0      3      0      3
  16Q GAIN WILD-TYPE     22     29     36     18     11     19     21     19
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                3                 29
  CLUS_3                1                 36
  CLUS_4                6                 18
  CLUS_5                0                 11
  CLUS_6                3                 19
  CLUS_7                0                 21
  CLUS_8                3                 19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED       29      5     22      5
  17P GAIN WILD-TYPE     41     81     52     21
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               29                 41
  CLUS_2                5                 81
  CLUS_3               22                 52
  CLUS_4                5                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED       19      8     10      5     18      1      0
  17P GAIN WILD-TYPE     29     38     51     29     29     14      5
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               19                 29
  CLUS_2                8                 38
  CLUS_3               10                 51
  CLUS_4                5                 29
  CLUS_5               18                 29
  CLUS_6                1                 14
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        9     36      8
  17P GAIN WILD-TYPE     49     64     52
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2               36                 64
  CLUS_3                8                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P GAIN MUTATED        9      6     10      9     15      4
  17P GAIN WILD-TYPE     15     22     29     59     22     18
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                6                 22
  CLUS_3               10                 29
  CLUS_4                9                 59
  CLUS_5               15                 22
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       36     12     12
  17P GAIN WILD-TYPE     78     65     51
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               36                 78
  CLUS_2               12                 65
  CLUS_3               12                 51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED       18      4      6      8      9      6      9
  17P GAIN WILD-TYPE     28     19     43     38     19     23     24
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               18                 28
  CLUS_2                4                 19
  CLUS_3                6                 43
  CLUS_4                8                 38
  CLUS_5                9                 19
  CLUS_6                6                 23
  CLUS_7                9                 24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       25     18     18
  17P GAIN WILD-TYPE     82     32     79
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               25                 82
  CLUS_2               18                 32
  CLUS_3               18                 79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED       24     19     17      1
  17P GAIN WILD-TYPE     55     33     83     22
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               24                 55
  CLUS_2               19                 33
  CLUS_3               17                 83
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       18     12     17
  17P GAIN WILD-TYPE     65     52     29
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               18                 65
  CLUS_2               12                 52
  CLUS_3               17                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17P GAIN MUTATED       11      6      6      7      1      8      6      2
  17P GAIN WILD-TYPE     13     26     31     17     10     14     15     20
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                6                 26
  CLUS_3                6                 31
  CLUS_4                7                 17
  CLUS_5                1                 10
  CLUS_6                8                 14
  CLUS_7                6                 15
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       29      6     19      3
  17Q GAIN WILD-TYPE     41     80     55     23
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               29                 41
  CLUS_2                6                 80
  CLUS_3               19                 55
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED       15      8      9      5     18      2      0
  17Q GAIN WILD-TYPE     33     38     52     29     29     13      5
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               15                 33
  CLUS_2                8                 38
  CLUS_3                9                 52
  CLUS_4                5                 29
  CLUS_5               18                 29
  CLUS_6                2                 13
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       13     30      6
  17Q GAIN WILD-TYPE     45     70     54
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               30                 70
  CLUS_3                6                 54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q GAIN MUTATED       11      5      9      8     12      4
  17Q GAIN WILD-TYPE     13     23     30     60     25     18
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                5                 23
  CLUS_3                9                 30
  CLUS_4                8                 60
  CLUS_5               12                 25
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       33     12     11
  17Q GAIN WILD-TYPE     81     65     52
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               33                 81
  CLUS_2               12                 65
  CLUS_3               11                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED       16      3      4      6     11      8      8
  17Q GAIN WILD-TYPE     30     20     45     40     17     21     25
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               16                 30
  CLUS_2                3                 20
  CLUS_3                4                 45
  CLUS_4                6                 40
  CLUS_5               11                 17
  CLUS_6                8                 21
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       21     19     17
  17Q GAIN WILD-TYPE     86     31     80
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               21                 86
  CLUS_2               19                 31
  CLUS_3               17                 80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       21     19     16      1
  17Q GAIN WILD-TYPE     58     33     84     22
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               21                 58
  CLUS_2               19                 33
  CLUS_3               16                 84
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       15     14     20
  17Q GAIN WILD-TYPE     68     50     26
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               15                 68
  CLUS_2               14                 50
  CLUS_3               20                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17Q GAIN MUTATED       11      4      7      8      2      7      8      2
  17Q GAIN WILD-TYPE     13     28     30     16      9     15     13     20
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                4                 28
  CLUS_3                7                 30
  CLUS_4                8                 16
  CLUS_5                2                  9
  CLUS_6                7                 15
  CLUS_7                8                 13
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       25      5     20      3
  18P GAIN WILD-TYPE     45     81     54     23
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               25                 45
  CLUS_2                5                 81
  CLUS_3               20                 54
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED       14      9      9      4     15      0      2
  18P GAIN WILD-TYPE     34     37     52     30     32     15      3
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               14                 34
  CLUS_2                9                 37
  CLUS_3                9                 52
  CLUS_4                4                 30
  CLUS_5               15                 32
  CLUS_6                0                 15
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       13     28      8
  18P GAIN WILD-TYPE     45     72     52
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               28                 72
  CLUS_3                8                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P GAIN MUTATED        9      5      9     11     12      3
  18P GAIN WILD-TYPE     15     23     30     57     25     19
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                5                 23
  CLUS_3                9                 30
  CLUS_4               11                 57
  CLUS_5               12                 25
  CLUS_6                3                 19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       31     13      9
  18P GAIN WILD-TYPE     83     64     54
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               31                 83
  CLUS_2               13                 64
  CLUS_3                9                 54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED       15      5      7      7      7      5      7
  18P GAIN WILD-TYPE     31     18     42     39     21     24     26
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               15                 31
  CLUS_2                5                 18
  CLUS_3                7                 42
  CLUS_4                7                 39
  CLUS_5                7                 21
  CLUS_6                5                 24
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       22     13     18
  18P GAIN WILD-TYPE     85     37     79
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               22                 85
  CLUS_2               13                 37
  CLUS_3               18                 79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       20     11     20      2
  18P GAIN WILD-TYPE     59     41     80     21
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               20                 59
  CLUS_2               11                 41
  CLUS_3               20                 80
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       17     17     11
  18P GAIN WILD-TYPE     66     47     35
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               17                 66
  CLUS_2               17                 47
  CLUS_3               11                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18P GAIN MUTATED        9      5      8      8      1      6      6      2
  18P GAIN WILD-TYPE     15     27     29     16     10     16     15     20
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                5                 27
  CLUS_3                8                 29
  CLUS_4                8                 16
  CLUS_5                1                 10
  CLUS_6                6                 16
  CLUS_7                6                 15
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       15      5     13      3
  18Q GAIN WILD-TYPE     55     81     61     23
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               15                 55
  CLUS_2                5                 81
  CLUS_3               13                 61
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED       10      5      9      5      4      0      3
  18Q GAIN WILD-TYPE     38     41     52     29     43     15      2
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                 38
  CLUS_2                5                 41
  CLUS_3                9                 52
  CLUS_4                5                 29
  CLUS_5                4                 43
  CLUS_6                0                 15
  CLUS_7                3                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       11     14      9
  18Q GAIN WILD-TYPE     47     86     51
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               14                 86
  CLUS_3                9                 51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q GAIN MUTATED        8      1      4     12      6      3
  18Q GAIN WILD-TYPE     16     27     35     56     31     19
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                1                 27
  CLUS_3                4                 35
  CLUS_4               12                 56
  CLUS_5                6                 31
  CLUS_6                3                 19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       17     12      7
  18Q GAIN WILD-TYPE     97     65     56
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               17                 97
  CLUS_2               12                 65
  CLUS_3                7                 56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED       12      2      6      5      2      6      3
  18Q GAIN WILD-TYPE     34     21     43     41     26     23     30
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               12                 34
  CLUS_2                2                 21
  CLUS_3                6                 43
  CLUS_4                5                 41
  CLUS_5                2                 26
  CLUS_6                6                 23
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       18      5     13
  18Q GAIN WILD-TYPE     89     45     84
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               18                 89
  CLUS_2                5                 45
  CLUS_3               13                 84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       14      6     15      1
  18Q GAIN WILD-TYPE     65     46     85     22
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               14                 65
  CLUS_2                6                 46
  CLUS_3               15                 85
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       12     13      4
  18Q GAIN WILD-TYPE     71     51     42
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               12                 71
  CLUS_2               13                 51
  CLUS_3                4                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18Q GAIN MUTATED        4      5      6      4      2      2      3      3
  18Q GAIN WILD-TYPE     20     27     31     20      9     20     18     19
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                5                 27
  CLUS_3                6                 31
  CLUS_4                4                 20
  CLUS_5                2                  9
  CLUS_6                2                 20
  CLUS_7                3                 18
  CLUS_8                3                 19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       28      6     45      8
  19P GAIN WILD-TYPE     42     80     29     18
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               28                 42
  CLUS_2                6                 80
  CLUS_3               45                 29
  CLUS_4                8                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED       27     16     17      7     18      1      1
  19P GAIN WILD-TYPE     21     30     44     27     29     14      4
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               27                 21
  CLUS_2               16                 30
  CLUS_3               17                 44
  CLUS_4                7                 27
  CLUS_5               18                 29
  CLUS_6                1                 14
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       24     39     16
  19P GAIN WILD-TYPE     34     61     44
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               24                 34
  CLUS_2               39                 61
  CLUS_3               16                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P GAIN MUTATED       15      6     22     17     15      4
  19P GAIN WILD-TYPE      9     22     17     51     22     18
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               15                  9
  CLUS_2                6                 22
  CLUS_3               22                 17
  CLUS_4               17                 51
  CLUS_5               15                 22
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       49     19     19
  19P GAIN WILD-TYPE     65     58     44
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               49                 65
  CLUS_2               19                 58
  CLUS_3               19                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED       27      8     11     13     11      9      8
  19P GAIN WILD-TYPE     19     15     38     33     17     20     25
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               27                 19
  CLUS_2                8                 15
  CLUS_3               11                 38
  CLUS_4               13                 33
  CLUS_5               11                 17
  CLUS_6                9                 20
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       41     14     32
  19P GAIN WILD-TYPE     66     36     65
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               41                 66
  CLUS_2               14                 36
  CLUS_3               32                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       32     20     30      5
  19P GAIN WILD-TYPE     47     32     70     18
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               32                 47
  CLUS_2               20                 32
  CLUS_3               30                 70
  CLUS_4                5                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       31     21     16
  19P GAIN WILD-TYPE     52     43     30
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               31                 52
  CLUS_2               21                 43
  CLUS_3               16                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19P GAIN MUTATED        9     18     11     10      3      4      8      5
  19P GAIN WILD-TYPE     15     14     26     14      8     18     13     17
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2               18                 14
  CLUS_3               11                 26
  CLUS_4               10                 14
  CLUS_5                3                  8
  CLUS_6                4                 18
  CLUS_7                8                 13
  CLUS_8                5                 17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       24      5     29      7
  19Q GAIN WILD-TYPE     46     81     45     19
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               24                 46
  CLUS_2                5                 81
  CLUS_3               29                 45
  CLUS_4                7                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED       23     12      9      3     18      0      0
  19Q GAIN WILD-TYPE     25     34     52     31     29     15      5
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               23                 25
  CLUS_2               12                 34
  CLUS_3                9                 52
  CLUS_4                3                 31
  CLUS_5               18                 29
  CLUS_6                0                 15
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       22     28      8
  19Q GAIN WILD-TYPE     36     72     52
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               28                 72
  CLUS_3                8                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q GAIN MUTATED       15      7     15      7     12      2
  19Q GAIN WILD-TYPE      9     21     24     61     25     20
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               15                  9
  CLUS_2                7                 21
  CLUS_3               15                 24
  CLUS_4                7                 61
  CLUS_5               12                 25
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       42     10     13
  19Q GAIN WILD-TYPE     72     67     50
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               42                 72
  CLUS_2               10                 67
  CLUS_3               13                 50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED       23      5      6      8     10      4      9
  19Q GAIN WILD-TYPE     23     18     43     38     18     25     24
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               23                 23
  CLUS_2                5                 18
  CLUS_3                6                 43
  CLUS_4                8                 38
  CLUS_5               10                 18
  CLUS_6                4                 25
  CLUS_7                9                 24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       31     12     22
  19Q GAIN WILD-TYPE     76     38     75
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               31                 76
  CLUS_2               12                 38
  CLUS_3               22                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       27     14     22      2
  19Q GAIN WILD-TYPE     52     38     78     21
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               27                 52
  CLUS_2               14                 38
  CLUS_3               22                 78
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       22     16     14
  19Q GAIN WILD-TYPE     61     48     32
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               22                 61
  CLUS_2               16                 48
  CLUS_3               14                 32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19Q GAIN MUTATED        7     14      6     10      3      5      6      1
  19Q GAIN WILD-TYPE     17     18     31     14      8     17     15     21
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                7                 17
  CLUS_2               14                 18
  CLUS_3                6                 31
  CLUS_4               10                 14
  CLUS_5                3                  8
  CLUS_6                5                 17
  CLUS_7                6                 15
  CLUS_8                1                 21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       19      9     29      5
  20P GAIN WILD-TYPE     51     77     45     21
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               19                 51
  CLUS_2                9                 77
  CLUS_3               29                 45
  CLUS_4                5                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED       13      9     13      6     18      1      2
  20P GAIN WILD-TYPE     35     37     48     28     29     14      3
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               13                 35
  CLUS_2                9                 37
  CLUS_3               13                 48
  CLUS_4                6                 28
  CLUS_5               18                 29
  CLUS_6                1                 14
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       14     32     11
  20P GAIN WILD-TYPE     44     68     49
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               14                 44
  CLUS_2               32                 68
  CLUS_3               11                 49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P GAIN MUTATED        5      7     16     13     10      6
  20P GAIN WILD-TYPE     19     21     23     55     27     16
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                7                 21
  CLUS_3               16                 23
  CLUS_4               13                 55
  CLUS_5               10                 27
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       33     16     13
  20P GAIN WILD-TYPE     81     61     50
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               33                 81
  CLUS_2               16                 61
  CLUS_3               13                 50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED       17      2     11      8     10      5      9
  20P GAIN WILD-TYPE     29     21     38     38     18     24     24
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               17                 29
  CLUS_2                2                 21
  CLUS_3               11                 38
  CLUS_4                8                 38
  CLUS_5               10                 18
  CLUS_6                5                 24
  CLUS_7                9                 24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       24     13     24
  20P GAIN WILD-TYPE     83     37     73
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               24                 83
  CLUS_2               13                 37
  CLUS_3               24                 73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       22     12     25      2
  20P GAIN WILD-TYPE     57     40     75     21
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               22                 57
  CLUS_2               12                 40
  CLUS_3               25                 75
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       20     16     15
  20P GAIN WILD-TYPE     63     48     31
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               20                 63
  CLUS_2               16                 48
  CLUS_3               15                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20P GAIN MUTATED        4     10      8      9      2      7      8      3
  20P GAIN WILD-TYPE     20     22     29     15      9     15     13     19
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2               10                 22
  CLUS_3                8                 29
  CLUS_4                9                 15
  CLUS_5                2                  9
  CLUS_6                7                 15
  CLUS_7                8                 13
  CLUS_8                3                 19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       26     12     36      9
  20Q GAIN WILD-TYPE     44     74     38     17
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               26                 44
  CLUS_2               12                 74
  CLUS_3               36                 38
  CLUS_4                9                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED       20     13     13      8     26      2      1
  20Q GAIN WILD-TYPE     28     33     48     26     21     13      4
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               20                 28
  CLUS_2               13                 33
  CLUS_3               13                 48
  CLUS_4                8                 26
  CLUS_5               26                 21
  CLUS_6                2                 13
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       18     46     13
  20Q GAIN WILD-TYPE     40     54     47
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               18                 40
  CLUS_2               46                 54
  CLUS_3               13                 47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q GAIN MUTATED        9      9     24     14     13      8
  20Q GAIN WILD-TYPE     15     19     15     54     24     14
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                9                 19
  CLUS_3               24                 15
  CLUS_4               14                 54
  CLUS_5               13                 24
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       45     17     21
  20Q GAIN WILD-TYPE     69     60     42
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               45                 69
  CLUS_2               17                 60
  CLUS_3               21                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED       19      6     12     14     14      4     14
  20Q GAIN WILD-TYPE     27     17     37     32     14     25     19
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               19                 27
  CLUS_2                6                 17
  CLUS_3               12                 37
  CLUS_4               14                 32
  CLUS_5               14                 14
  CLUS_6                4                 25
  CLUS_7               14                 19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       35     21     27
  20Q GAIN WILD-TYPE     72     29     70
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               35                 72
  CLUS_2               21                 29
  CLUS_3               27                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       32     20     29      2
  20Q GAIN WILD-TYPE     47     32     71     21
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               32                 47
  CLUS_2               20                 32
  CLUS_3               29                 71
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       26     20     22
  20Q GAIN WILD-TYPE     57     44     24
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               26                 57
  CLUS_2               20                 44
  CLUS_3               22                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20Q GAIN MUTATED        7     13      8     12      3     10     12      3
  20Q GAIN WILD-TYPE     17     19     29     12      8     12      9     19
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                7                 17
  CLUS_2               13                 19
  CLUS_3                8                 29
  CLUS_4               12                 12
  CLUS_5                3                  8
  CLUS_6               10                 12
  CLUS_7               12                  9
  CLUS_8                3                 19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       27      4     20      7
  21Q GAIN WILD-TYPE     43     82     54     19
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               27                 43
  CLUS_2                4                 82
  CLUS_3               20                 54
  CLUS_4                7                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED       15      7     12      6     16      0      2
  21Q GAIN WILD-TYPE     33     39     49     28     31     15      3
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 33
  CLUS_2                7                 39
  CLUS_3               12                 49
  CLUS_4                6                 28
  CLUS_5               16                 31
  CLUS_6                0                 15
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       13     30      8
  21Q GAIN WILD-TYPE     45     70     52
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               30                 70
  CLUS_3                8                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q GAIN MUTATED       10      3     12     12      7      7
  21Q GAIN WILD-TYPE     14     25     27     56     30     15
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                3                 25
  CLUS_3               12                 27
  CLUS_4               12                 56
  CLUS_5                7                 30
  CLUS_6                7                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       29     15     14
  21Q GAIN WILD-TYPE     85     62     49
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               29                 85
  CLUS_2               15                 62
  CLUS_3               14                 49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED       15      3      8     10      8      6      8
  21Q GAIN WILD-TYPE     31     20     41     36     20     23     25
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 31
  CLUS_2                3                 20
  CLUS_3                8                 41
  CLUS_4               10                 36
  CLUS_5                8                 20
  CLUS_6                6                 23
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       23     12     22
  21Q GAIN WILD-TYPE     84     38     75
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               23                 84
  CLUS_2               12                 38
  CLUS_3               22                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       17     14     22      4
  21Q GAIN WILD-TYPE     62     38     78     19
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               17                 62
  CLUS_2               14                 38
  CLUS_3               22                 78
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       15     17     14
  21Q GAIN WILD-TYPE     68     47     32
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 68
  CLUS_2               17                 47
  CLUS_3               14                 32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  21Q GAIN MUTATED        6      7      6     11      3      4      5      4
  21Q GAIN WILD-TYPE     18     25     31     13      8     18     16     18
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                7                 25
  CLUS_3                6                 31
  CLUS_4               11                 13
  CLUS_5                3                  8
  CLUS_6                4                 18
  CLUS_7                5                 16
  CLUS_8                4                 18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       21     12     24      3
  22Q GAIN WILD-TYPE     49     74     50     23
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               21                 49
  CLUS_2               12                 74
  CLUS_3               24                 50
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED       11      9     13      4     21      0      2
  22Q GAIN WILD-TYPE     37     37     48     30     26     15      3
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               11                 37
  CLUS_2                9                 37
  CLUS_3               13                 48
  CLUS_4                4                 30
  CLUS_5               21                 26
  CLUS_6                0                 15
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        8     33     11
  22Q GAIN WILD-TYPE     50     67     49
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                8                 50
  CLUS_2               33                 67
  CLUS_3               11                 49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q GAIN MUTATED        4      5     18     13     10      2
  22Q GAIN WILD-TYPE     20     23     21     55     27     20
D39V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                5                 23
  CLUS_3               18                 21
  CLUS_4               13                 55
  CLUS_5               10                 27
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       37     15      8
  22Q GAIN WILD-TYPE     77     62     55
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               37                 77
  CLUS_2               15                 62
  CLUS_3                8                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED       13      3     11      4     13      4     12
  22Q GAIN WILD-TYPE     33     20     38     42     15     25     21
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               13                 33
  CLUS_2                3                 20
  CLUS_3               11                 38
  CLUS_4                4                 42
  CLUS_5               13                 15
  CLUS_6                4                 25
  CLUS_7               12                 21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       22     11     25
  22Q GAIN WILD-TYPE     85     39     72
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               22                 85
  CLUS_2               11                 39
  CLUS_3               25                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       21     11     25      1
  22Q GAIN WILD-TYPE     58     41     75     22
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               21                 58
  CLUS_2               11                 41
  CLUS_3               25                 75
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       15     16     16
  22Q GAIN WILD-TYPE     68     48     30
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               15                 68
  CLUS_2               16                 48
  CLUS_3               16                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  22Q GAIN MUTATED        3      7      8     10      3      6      8      2
  22Q GAIN WILD-TYPE     21     25     29     14      8     16     13     20
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                7                 25
  CLUS_3                8                 29
  CLUS_4               10                 14
  CLUS_5                3                  8
  CLUS_6                6                 16
  CLUS_7                8                 13
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = XP GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED       29     10     28      7
  XP GAIN WILD-TYPE     41     76     46     19
D40V1, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              29                41
  CLUS_2              10                76
  CLUS_3              28                46
  CLUS_4               7                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP GAIN MUTATED       20      8     17      9     17      1      2
  XP GAIN WILD-TYPE     28     38     44     25     30     14      3
D40V2, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              20                28
  CLUS_2               8                38
  CLUS_3              17                44
  CLUS_4               9                25
  CLUS_5              17                30
  CLUS_6               1                14
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       21     30     13
  XP GAIN WILD-TYPE     37     70     47
D40V3, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              21                37
  CLUS_2              30                70
  CLUS_3              13                47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP GAIN MUTATED       10      5     15     18     10      6
  XP GAIN WILD-TYPE     14     23     24     50     27     16
D40V4, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               5                23
  CLUS_3              15                24
  CLUS_4              18                50
  CLUS_5              10                27
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       36     21     17
  XP GAIN WILD-TYPE     78     56     46
D40V5, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              36                78
  CLUS_2              21                56
  CLUS_3              17                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP GAIN MUTATED       19      5     15     10      9      5     11
  XP GAIN WILD-TYPE     27     18     34     36     19     24     22
D40V6, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              19                27
  CLUS_2               5                18
  CLUS_3              15                34
  CLUS_4              10                36
  CLUS_5               9                19
  CLUS_6               5                24
  CLUS_7              11                22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       27     19     27
  XP GAIN WILD-TYPE     80     31     70
D40V7, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              27                80
  CLUS_2              19                31
  CLUS_3              27                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED       22     19     27      5
  XP GAIN WILD-TYPE     57     33     73     18
D40V8, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              22                57
  CLUS_2              19                33
  CLUS_3              27                73
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       21     20     19
  XP GAIN WILD-TYPE     62     44     27
D40V9, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              21                62
  CLUS_2              20                44
  CLUS_3              19                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XP GAIN MUTATED        8     12      8     11      4      4      8      5
  XP GAIN WILD-TYPE     16     20     29     13      7     18     13     17
D40V10, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2              12                20
  CLUS_3               8                29
  CLUS_4              11                13
  CLUS_5               4                 7
  CLUS_6               4                18
  CLUS_7               8                13
  CLUS_8               5                17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        8      5     17      3
  XQ GAIN WILD-TYPE     62     81     57     23
D41V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                62
  CLUS_2               5                81
  CLUS_3              17                57
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        8      4      4      7      8      0      2
  XQ GAIN WILD-TYPE     40     42     57     27     39     15      3
D41V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                40
  CLUS_2               4                42
  CLUS_3               4                57
  CLUS_4               7                27
  CLUS_5               8                39
  CLUS_6               0                15
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       11     16      3
  XQ GAIN WILD-TYPE     47     84     57
D41V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2              16                84
  CLUS_3               3                57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ GAIN MUTATED        3      4      9      7      3      4
  XQ GAIN WILD-TYPE     21     24     30     61     34     18
D41V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               4                24
  CLUS_3               9                30
  CLUS_4               7                61
  CLUS_5               3                34
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       16      6     11
  XQ GAIN WILD-TYPE     98     71     52
D41V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              16                98
  CLUS_2               6                71
  CLUS_3              11                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        6      2      4      6      9      2      4
  XQ GAIN WILD-TYPE     40     21     45     40     19     27     29
D41V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               6                40
  CLUS_2               2                21
  CLUS_3               4                45
  CLUS_4               6                40
  CLUS_5               9                19
  CLUS_6               2                27
  CLUS_7               4                29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       14      9      9
  XQ GAIN WILD-TYPE     93     41     88
D41V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              14                93
  CLUS_2               9                41
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        8     11      9      4
  XQ GAIN WILD-TYPE     71     41     91     19
D41V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                71
  CLUS_2              11                41
  CLUS_3               9                91
  CLUS_4               4                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        9      7     10
  XQ GAIN WILD-TYPE     74     57     36
D41V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               9                74
  CLUS_2               7                57
  CLUS_3              10                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XQ GAIN MUTATED        2      3      3      5      0      2      6      5
  XQ GAIN WILD-TYPE     22     29     34     19     11     20     15     17
D41V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               3                29
  CLUS_3               3                34
  CLUS_4               5                19
  CLUS_5               0                11
  CLUS_6               2                20
  CLUS_7               6                15
  CLUS_8               5                17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        6      9     15      2
  1P LOSS WILD-TYPE     64     77     59     24
D42V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               6                64
  CLUS_2               9                77
  CLUS_3              15                59
  CLUS_4               2                24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        7      3      4      6      5      6      1
  1P LOSS WILD-TYPE     41     43     57     28     42      9      4
D42V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                41
  CLUS_2               3                43
  CLUS_3               4                57
  CLUS_4               6                28
  CLUS_5               5                42
  CLUS_6               6                 9
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        8     10     11
  1P LOSS WILD-TYPE     50     90     49
D42V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                50
  CLUS_2              10                90
  CLUS_3              11                49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P LOSS MUTATED        3      1      4     10      7      4
  1P LOSS WILD-TYPE     21     27     35     58     30     18
D42V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               1                27
  CLUS_3               4                35
  CLUS_4              10                58
  CLUS_5               7                30
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       14     10      8
  1P LOSS WILD-TYPE    100     67     55
D42V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              14               100
  CLUS_2              10                67
  CLUS_3               8                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        7      1      4      6      3      7      4
  1P LOSS WILD-TYPE     39     22     45     40     25     22     29
D42V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                39
  CLUS_2               1                22
  CLUS_3               4                45
  CLUS_4               6                40
  CLUS_5               3                25
  CLUS_6               7                22
  CLUS_7               4                29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       15      6     11
  1P LOSS WILD-TYPE     92     44     86
D42V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              15                92
  CLUS_2               6                44
  CLUS_3              11                86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       12      6     10      4
  1P LOSS WILD-TYPE     67     46     90     19
D42V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                67
  CLUS_2               6                46
  CLUS_3              10                90
  CLUS_4               4                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       13      5      5
  1P LOSS WILD-TYPE     70     59     41
D42V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13                70
  CLUS_2               5                59
  CLUS_3               5                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1P LOSS MUTATED        4      4      3      1      1      3      2      5
  1P LOSS WILD-TYPE     20     28     34     23     10     19     19     17
D42V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               4                28
  CLUS_3               3                34
  CLUS_4               1                23
  CLUS_5               1                10
  CLUS_6               3                19
  CLUS_7               2                19
  CLUS_8               5                17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       15      5     14      6
  1Q LOSS WILD-TYPE     55     81     60     20
D43V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              15                55
  CLUS_2               5                81
  CLUS_3              14                60
  CLUS_4               6                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED       15      5      4      1     11      3      1
  1Q LOSS WILD-TYPE     33     41     57     33     36     12      4
D43V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              15                33
  CLUS_2               5                41
  CLUS_3               4                57
  CLUS_4               1                33
  CLUS_5              11                36
  CLUS_6               3                12
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       12     19      7
  1Q LOSS WILD-TYPE     46     81     53
D43V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2              19                81
  CLUS_3               7                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q LOSS MUTATED        7      2      9      6     10      4
  1Q LOSS WILD-TYPE     17     26     30     62     27     18
D43V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               2                26
  CLUS_3               9                30
  CLUS_4               6                62
  CLUS_5              10                27
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       24      7      9
  1Q LOSS WILD-TYPE     90     70     54
D43V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              24                90
  CLUS_2               7                70
  CLUS_3               9                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED       12      2      4      6      6      3      7
  1Q LOSS WILD-TYPE     34     21     45     40     22     26     26
D43V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              12                34
  CLUS_2               2                21
  CLUS_3               4                45
  CLUS_4               6                40
  CLUS_5               6                22
  CLUS_6               3                26
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       21     11      8
  1Q LOSS WILD-TYPE     86     39     89
D43V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              21                86
  CLUS_2              11                39
  CLUS_3               8                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       21     10      8      1
  1Q LOSS WILD-TYPE     58     42     92     22
D43V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              21                58
  CLUS_2              10                42
  CLUS_3               8                92
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       18      5      8
  1Q LOSS WILD-TYPE     65     59     38
D43V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              18                65
  CLUS_2               5                59
  CLUS_3               8                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1Q LOSS MUTATED        6      9      3      2      0      5      5      1
  1Q LOSS WILD-TYPE     18     23     34     22     11     17     16     21
D43V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               9                23
  CLUS_3               3                34
  CLUS_4               2                22
  CLUS_5               0                11
  CLUS_6               5                17
  CLUS_7               5                16
  CLUS_8               1                21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       45      8     29      6
  2P LOSS WILD-TYPE     25     78     45     20
D44V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              45                25
  CLUS_2               8                78
  CLUS_3              29                45
  CLUS_4               6                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED       21     10     36      4     16      0      1
  2P LOSS WILD-TYPE     27     36     25     30     31     15      4
D44V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              21                27
  CLUS_2              10                36
  CLUS_3              36                25
  CLUS_4               4                30
  CLUS_5              16                31
  CLUS_6               0                15
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       16     29     30
  2P LOSS WILD-TYPE     42     71     30
D44V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              16                42
  CLUS_2              29                71
  CLUS_3              30                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P LOSS MUTATED       13      5      9     31     15      2
  2P LOSS WILD-TYPE     11     23     30     37     22     20
D44V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              13                11
  CLUS_2               5                23
  CLUS_3               9                30
  CLUS_4              31                37
  CLUS_5              15                22
  CLUS_6               2                20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       40     39      8
  2P LOSS WILD-TYPE     74     38     55
D44V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              40                74
  CLUS_2              39                38
  CLUS_3               8                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED       21      6     28      5      6     10     11
  2P LOSS WILD-TYPE     25     17     21     41     22     19     22
D44V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              21                25
  CLUS_2               6                17
  CLUS_3              28                21
  CLUS_4               5                41
  CLUS_5               6                22
  CLUS_6              10                19
  CLUS_7              11                22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       25     18     45
  2P LOSS WILD-TYPE     82     32     52
D44V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              25                82
  CLUS_2              18                32
  CLUS_3              45                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       25     15     47      1
  2P LOSS WILD-TYPE     54     37     53     22
D44V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              25                54
  CLUS_2              15                37
  CLUS_3              47                53
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       19     34     17
  2P LOSS WILD-TYPE     64     30     29
D44V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              19                64
  CLUS_2              34                30
  CLUS_3              17                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2P LOSS MUTATED       11     10     22     11      5      5      5      1
  2P LOSS WILD-TYPE     13     22     15     13      6     17     16     21
D44V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              11                13
  CLUS_2              10                22
  CLUS_3              22                15
  CLUS_4              11                13
  CLUS_5               5                 6
  CLUS_6               5                17
  CLUS_7               5                16
  CLUS_8               1                21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       36      5     23      7
  2Q LOSS WILD-TYPE     34     81     51     19
D45V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              36                34
  CLUS_2               5                81
  CLUS_3              23                51
  CLUS_4               7                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED       14      8     22      5     21      0      1
  2Q LOSS WILD-TYPE     34     38     39     29     26     15      4
D45V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              14                34
  CLUS_2               8                38
  CLUS_3              22                39
  CLUS_4               5                29
  CLUS_5              21                26
  CLUS_6               0                15
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       11     30     21
  2Q LOSS WILD-TYPE     47     70     39
D45V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              11                47
  CLUS_2              30                70
  CLUS_3              21                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q LOSS MUTATED        9      3     11     21     13      5
  2Q LOSS WILD-TYPE     15     25     28     47     24     17
D45V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               3                25
  CLUS_3              11                28
  CLUS_4              21                47
  CLUS_5              13                24
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       33     25     11
  2Q LOSS WILD-TYPE     81     52     52
D45V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              33                81
  CLUS_2              25                52
  CLUS_3              11                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED       14      5     14      6      6     10     14
  2Q LOSS WILD-TYPE     32     18     35     40     22     19     19
D45V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              14                32
  CLUS_2               5                18
  CLUS_3              14                35
  CLUS_4               6                40
  CLUS_5               6                22
  CLUS_6              10                19
  CLUS_7              14                19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       28     13     30
  2Q LOSS WILD-TYPE     79     37     67
D45V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              28                79
  CLUS_2              13                37
  CLUS_3              30                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       26     11     31      3
  2Q LOSS WILD-TYPE     53     41     69     20
D45V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              26                53
  CLUS_2              11                41
  CLUS_3              31                69
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       22     21     14
  2Q LOSS WILD-TYPE     61     43     32
D45V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              22                61
  CLUS_2              21                43
  CLUS_3              14                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2Q LOSS MUTATED        7     10     12      8      5      7      5      3
  2Q LOSS WILD-TYPE     17     22     25     16      6     15     16     19
D45V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2              10                22
  CLUS_3              12                25
  CLUS_4               8                16
  CLUS_5               5                 6
  CLUS_6               7                15
  CLUS_7               5                16
  CLUS_8               3                19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       16     12     18     10
  3P LOSS WILD-TYPE     54     74     56     16
D46V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              16                54
  CLUS_2              12                74
  CLUS_3              18                56
  CLUS_4              10                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED       21      8      3      8     12      2      2
  3P LOSS WILD-TYPE     27     38     58     26     35     13      3
D46V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              21                27
  CLUS_2               8                38
  CLUS_3               3                58
  CLUS_4               8                26
  CLUS_5              12                35
  CLUS_6               2                13
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       16     25      8
  3P LOSS WILD-TYPE     42     75     52
D46V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              16                42
  CLUS_2              25                75
  CLUS_3               8                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P LOSS MUTATED        9      6     12      5     11      6
  3P LOSS WILD-TYPE     15     22     27     63     26     16
D46V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               6                22
  CLUS_3              12                27
  CLUS_4               5                63
  CLUS_5              11                26
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       31      5     20
  3P LOSS WILD-TYPE     83     72     43
D46V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              31                83
  CLUS_2               5                72
  CLUS_3              20                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED       19      4      3     14      8      2      6
  3P LOSS WILD-TYPE     27     19     46     32     20     27     27
D46V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              19                27
  CLUS_2               4                19
  CLUS_3               3                46
  CLUS_4              14                32
  CLUS_5               8                20
  CLUS_6               2                27
  CLUS_7               6                27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       32     14      9
  3P LOSS WILD-TYPE     75     36     88
D46V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              32                75
  CLUS_2              14                36
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       26     12     10      7
  3P LOSS WILD-TYPE     53     40     90     16
D46V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              26                53
  CLUS_2              12                40
  CLUS_3              10                90
  CLUS_4               7                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       27      5     13
  3P LOSS WILD-TYPE     56     59     33
D46V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              27                56
  CLUS_2               5                59
  CLUS_3              13                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3P LOSS MUTATED        7     16      2      5      0      4      4      7
  3P LOSS WILD-TYPE     17     16     35     19     11     18     17     15
D46V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2              16                16
  CLUS_3               2                35
  CLUS_4               5                19
  CLUS_5               0                11
  CLUS_6               4                18
  CLUS_7               4                17
  CLUS_8               7                15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       13      7     19     10
  3Q LOSS WILD-TYPE     57     79     55     16
D47V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13                57
  CLUS_2               7                79
  CLUS_3              19                55
  CLUS_4              10                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED       16      7      5      6     12      1      2
  3Q LOSS WILD-TYPE     32     39     56     28     35     14      3
D47V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              16                32
  CLUS_2               7                39
  CLUS_3               5                56
  CLUS_4               6                28
  CLUS_5              12                35
  CLUS_6               1                14
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       11     23      9
  3Q LOSS WILD-TYPE     47     77     51
D47V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11                47
  CLUS_2              23                77
  CLUS_3               9                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q LOSS MUTATED        6      6     10      6     10      5
  3Q LOSS WILD-TYPE     18     22     29     62     27     17
D47V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               6                22
  CLUS_3              10                29
  CLUS_4               6                62
  CLUS_5              10                27
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       24      7     18
  3Q LOSS WILD-TYPE     90     70     45
D47V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              24                90
  CLUS_2               7                70
  CLUS_3              18                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED       15      3      5     10      7      2      7
  3Q LOSS WILD-TYPE     31     20     44     36     21     27     26
D47V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              15                31
  CLUS_2               3                20
  CLUS_3               5                44
  CLUS_4              10                36
  CLUS_5               7                21
  CLUS_6               2                27
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       27     11     10
  3Q LOSS WILD-TYPE     80     39     87
D47V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              27                80
  CLUS_2              11                39
  CLUS_3              10                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       22     11     10      5
  3Q LOSS WILD-TYPE     57     41     90     18
D47V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              22                57
  CLUS_2              11                41
  CLUS_3              10                90
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       22      5     10
  3Q LOSS WILD-TYPE     61     59     36
D47V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              22                61
  CLUS_2               5                59
  CLUS_3              10                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3Q LOSS MUTATED        5     13      3      2      1      4      4      5
  3Q LOSS WILD-TYPE     19     19     34     22     10     18     17     17
D47V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2              13                19
  CLUS_3               3                34
  CLUS_4               2                22
  CLUS_5               1                10
  CLUS_6               4                18
  CLUS_7               4                17
  CLUS_8               5                17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       16      8     15      3
  4P LOSS WILD-TYPE     54     78     59     23
D48V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              16                54
  CLUS_2               8                78
  CLUS_3              15                59
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED        8      6     10      7      7      3      1
  4P LOSS WILD-TYPE     40     40     51     27     40     12      4
D48V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               8                40
  CLUS_2               6                40
  CLUS_3              10                51
  CLUS_4               7                27
  CLUS_5               7                40
  CLUS_6               3                12
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        8     20     12
  4P LOSS WILD-TYPE     50     80     48
D48V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               8                50
  CLUS_2              20                80
  CLUS_3              12                48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P LOSS MUTATED        3      4      8     12      7      6
  4P LOSS WILD-TYPE     21     24     31     56     30     16
D48V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               4                24
  CLUS_3               8                31
  CLUS_4              12                56
  CLUS_5               7                30
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       18     14     10
  4P LOSS WILD-TYPE     96     63     53
D48V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              18                96
  CLUS_2              14                63
  CLUS_3              10                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED        9      4      9      6      4      5      5
  4P LOSS WILD-TYPE     37     19     40     40     24     24     28
D48V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9                37
  CLUS_2               4                19
  CLUS_3               9                40
  CLUS_4               6                40
  CLUS_5               4                24
  CLUS_6               5                24
  CLUS_7               5                28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       16      7     19
  4P LOSS WILD-TYPE     91     43     78
D48V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              16                91
  CLUS_2               7                43
  CLUS_3              19                78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       14      5     19      4
  4P LOSS WILD-TYPE     65     47     81     19
D48V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              14                65
  CLUS_2               5                47
  CLUS_3              19                81
  CLUS_4               4                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       13     11      6
  4P LOSS WILD-TYPE     70     53     40
D48V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              13                70
  CLUS_2              11                53
  CLUS_3               6                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4P LOSS MUTATED        6      3      6      3      2      2      2      6
  4P LOSS WILD-TYPE     18     29     31     21      9     20     19     16
D48V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               3                29
  CLUS_3               6                31
  CLUS_4               3                21
  CLUS_5               2                 9
  CLUS_6               2                20
  CLUS_7               2                19
  CLUS_8               6                16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       21      7     19      4
  4Q LOSS WILD-TYPE     49     79     55     22
D49V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              21                49
  CLUS_2               7                79
  CLUS_3              19                55
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED       11      5     12      9     12      1      1
  4Q LOSS WILD-TYPE     37     41     49     25     35     14      4
D49V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              11                37
  CLUS_2               5                41
  CLUS_3              12                49
  CLUS_4               9                25
  CLUS_5              12                35
  CLUS_6               1                14
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       10     26     13
  4Q LOSS WILD-TYPE     48     74     47
D49V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2              26                74
  CLUS_3              13                47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q LOSS MUTATED        4      4     12     12     11      6
  4Q LOSS WILD-TYPE     20     24     27     56     26     16
D49V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               4                24
  CLUS_3              12                27
  CLUS_4              12                56
  CLUS_5              11                26
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       24     14     13
  4Q LOSS WILD-TYPE     90     63     50
D49V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              24                90
  CLUS_2              14                63
  CLUS_3              13                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED       10      3     10     10      9      4      5
  4Q LOSS WILD-TYPE     36     20     39     36     19     25     28
D49V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                36
  CLUS_2               3                20
  CLUS_3              10                39
  CLUS_4              10                36
  CLUS_5               9                19
  CLUS_6               4                25
  CLUS_7               5                28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       20     11     19
  4Q LOSS WILD-TYPE     87     39     78
D49V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              20                87
  CLUS_2              11                39
  CLUS_3              19                78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       18      8     20      4
  4Q LOSS WILD-TYPE     61     44     80     19
D49V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              18                61
  CLUS_2               8                44
  CLUS_3              20                80
  CLUS_4               4                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       18     14      8
  4Q LOSS WILD-TYPE     65     50     38
D49V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              18                65
  CLUS_2              14                50
  CLUS_3               8                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4Q LOSS MUTATED        8      4      6      5      3      5      3      6
  4Q LOSS WILD-TYPE     16     28     31     19      8     17     18     16
D49V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               4                28
  CLUS_3               6                31
  CLUS_4               5                19
  CLUS_5               3                 8
  CLUS_6               5                17
  CLUS_7               3                18
  CLUS_8               6                16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        5      7      6      4
  5P LOSS WILD-TYPE     65     79     68     22
D50V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5                65
  CLUS_2               7                79
  CLUS_3               6                68
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED        6      2      1      4      8      1      0
  5P LOSS WILD-TYPE     42     44     60     30     39     14      5
D50V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                42
  CLUS_2               2                44
  CLUS_3               1                60
  CLUS_4               4                30
  CLUS_5               8                39
  CLUS_6               1                14
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        6     14      1
  5P LOSS WILD-TYPE     52     86     59
D50V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                52
  CLUS_2              14                86
  CLUS_3               1                59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P LOSS MUTATED        3      4      4      2      7      1
  5P LOSS WILD-TYPE     21     24     35     66     30     21
D50V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               4                24
  CLUS_3               4                35
  CLUS_4               2                66
  CLUS_5               7                30
  CLUS_6               1                21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       13      2      7
  5P LOSS WILD-TYPE    101     75     56
D50V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              13               101
  CLUS_2               2                75
  CLUS_3               7                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED        5      3      0      2      4      2      6
  5P LOSS WILD-TYPE     41     20     49     44     24     27     27
D50V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5                41
  CLUS_2               3                20
  CLUS_3               0                49
  CLUS_4               2                44
  CLUS_5               4                24
  CLUS_6               2                27
  CLUS_7               6                27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       10      6      6
  5P LOSS WILD-TYPE     97     44     91
D50V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              10                97
  CLUS_2               6                44
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED       10      5      6      1
  5P LOSS WILD-TYPE     69     47     94     22
D50V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              10                69
  CLUS_2               5                47
  CLUS_3               6                94
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        8      3      8
  5P LOSS WILD-TYPE     75     61     38
D50V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               8                75
  CLUS_2               3                61
  CLUS_3               8                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5P LOSS MUTATED        3      3      1      5      0      4      1      2
  5P LOSS WILD-TYPE     21     29     36     19     11     18     20     20
D50V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               3                29
  CLUS_3               1                36
  CLUS_4               5                19
  CLUS_5               0                11
  CLUS_6               4                18
  CLUS_7               1                20
  CLUS_8               2                20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       12      6     11      6
  5Q LOSS WILD-TYPE     58     80     63     20
D51V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              12                58
  CLUS_2               6                80
  CLUS_3              11                63
  CLUS_4               6                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        9      4      5      3     12      1      1
  5Q LOSS WILD-TYPE     39     42     56     31     35     14      4
D51V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               9                39
  CLUS_2               4                42
  CLUS_3               5                56
  CLUS_4               3                31
  CLUS_5              12                35
  CLUS_6               1                14
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        7     22      4
  5Q LOSS WILD-TYPE     51     78     56
D51V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2              22                78
  CLUS_3               4                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q LOSS MUTATED        5      4      7      4     11      2
  5Q LOSS WILD-TYPE     19     24     32     64     26     20
D51V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               4                24
  CLUS_3               7                32
  CLUS_4               4                64
  CLUS_5              11                26
  CLUS_6               2                20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       20      6      9
  5Q LOSS WILD-TYPE     94     71     54
D51V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              20                94
  CLUS_2               6                71
  CLUS_3               9                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        8      4      2      3      5      4      9
  5Q LOSS WILD-TYPE     38     19     47     43     23     25     24
D51V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                38
  CLUS_2               4                19
  CLUS_3               2                47
  CLUS_4               3                43
  CLUS_5               5                23
  CLUS_6               4                25
  CLUS_7               9                24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       17      6     12
  5Q LOSS WILD-TYPE     90     44     85
D51V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              17                90
  CLUS_2               6                44
  CLUS_3              12                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       18      4     12      1
  5Q LOSS WILD-TYPE     61     48     88     22
D51V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              18                61
  CLUS_2               4                48
  CLUS_3              12                88
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       12      6      9
  5Q LOSS WILD-TYPE     71     58     37
D51V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              12                71
  CLUS_2               6                58
  CLUS_3               9                37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5Q LOSS MUTATED        4      6      2      5      2      5      2      1
  5Q LOSS WILD-TYPE     20     26     35     19      9     17     19     21
D51V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               6                26
  CLUS_3               2                35
  CLUS_4               5                19
  CLUS_5               2                 9
  CLUS_6               5                17
  CLUS_7               2                19
  CLUS_8               1                21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       19     16     20      5
  6P LOSS WILD-TYPE     51     70     54     21
D52V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              19                51
  CLUS_2              16                70
  CLUS_3              20                54
  CLUS_4               5                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED       10      5     21      5     14      3      2
  6P LOSS WILD-TYPE     38     41     40     29     33     12      3
D52V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                38
  CLUS_2               5                41
  CLUS_3              21                40
  CLUS_4               5                29
  CLUS_5              14                33
  CLUS_6               3                12
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       10     21     20
  6P LOSS WILD-TYPE     48     79     40
D52V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2              21                79
  CLUS_3              20                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P LOSS MUTATED        4      4      9     20     10      4
  6P LOSS WILD-TYPE     20     24     30     48     27     18
D52V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               4                24
  CLUS_3               9                30
  CLUS_4              20                48
  CLUS_5              10                27
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       22     24     12
  6P LOSS WILD-TYPE     92     53     51
D52V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              22                92
  CLUS_2              24                53
  CLUS_3              12                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        8      3     17      7      7      8      8
  6P LOSS WILD-TYPE     38     20     32     39     21     21     25
D52V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               8                38
  CLUS_2               3                20
  CLUS_3              17                32
  CLUS_4               7                39
  CLUS_5               7                21
  CLUS_6               8                21
  CLUS_7               8                25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       20     12     27
  6P LOSS WILD-TYPE     87     38     70
D52V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              20                87
  CLUS_2              12                38
  CLUS_3              27                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       18     10     28      3
  6P LOSS WILD-TYPE     61     42     72     20
D52V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              18                61
  CLUS_2              10                42
  CLUS_3              28                72
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       17     18     13
  6P LOSS WILD-TYPE     66     46     33
D52V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              17                66
  CLUS_2              18                46
  CLUS_3              13                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6P LOSS MUTATED        6      7     11      2      6      7      5      4
  6P LOSS WILD-TYPE     18     25     26     22      5     15     16     18
D52V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               7                25
  CLUS_3              11                26
  CLUS_4               2                22
  CLUS_5               6                 5
  CLUS_6               7                15
  CLUS_7               5                16
  CLUS_8               4                18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       16     11     23      3
  6Q LOSS WILD-TYPE     54     75     51     23
D53V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              16                54
  CLUS_2              11                75
  CLUS_3              23                51
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        5      4     17      7     16      2      2
  6Q LOSS WILD-TYPE     43     42     44     27     31     13      3
D53V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                43
  CLUS_2               4                42
  CLUS_3              17                44
  CLUS_4               7                27
  CLUS_5              16                31
  CLUS_6               2                13
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        7     24     13
  6Q LOSS WILD-TYPE     51     76     47
D53V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2              24                76
  CLUS_3              13                47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q LOSS MUTATED        3      3     12     13      7      6
  6Q LOSS WILD-TYPE     21     25     27     55     30     16
D53V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               3                25
  CLUS_3              12                27
  CLUS_4              13                55
  CLUS_5               7                30
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       20     19     13
  6Q LOSS WILD-TYPE     94     58     50
D53V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              20                94
  CLUS_2              19                58
  CLUS_3              13                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        6      1     13      8      8      6     10
  6Q LOSS WILD-TYPE     40     22     36     38     20     23     23
D53V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               6                40
  CLUS_2               1                22
  CLUS_3              13                36
  CLUS_4               8                38
  CLUS_5               8                20
  CLUS_6               6                23
  CLUS_7              10                23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       21     10     22
  6Q LOSS WILD-TYPE     86     40     75
D53V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              21                86
  CLUS_2              10                40
  CLUS_3              22                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       17      8     24      4
  6Q LOSS WILD-TYPE     62     44     76     19
D53V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              17                62
  CLUS_2               8                44
  CLUS_3              24                76
  CLUS_4               4                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       17     16     12
  6Q LOSS WILD-TYPE     66     48     34
D53V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              17                66
  CLUS_2              16                48
  CLUS_3              12                34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6Q LOSS MUTATED        3      5     11      5      3      8      5      5
  6Q LOSS WILD-TYPE     21     27     26     19      8     14     16     17
D53V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               5                27
  CLUS_3              11                26
  CLUS_4               5                19
  CLUS_5               3                 8
  CLUS_6               8                14
  CLUS_7               5                16
  CLUS_8               5                17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED       11      5     13      3
  7P LOSS WILD-TYPE     59     81     61     23
D54V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              11                59
  CLUS_2               5                81
  CLUS_3              13                61
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P LOSS MUTATED        6      2     14      1      8      1      0
  7P LOSS WILD-TYPE     42     44     47     33     39     14      5
D54V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               6                42
  CLUS_2               2                44
  CLUS_3              14                47
  CLUS_4               1                33
  CLUS_5               8                39
  CLUS_6               1                14
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        3     10     15
  7P LOSS WILD-TYPE     55     90     45
D54V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                55
  CLUS_2              10                90
  CLUS_3              15                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P LOSS MUTATED        1      1      8     14      3      1
  7P LOSS WILD-TYPE     23     27     31     54     34     21
D54V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                23
  CLUS_2               1                27
  CLUS_3               8                31
  CLUS_4              14                54
  CLUS_5               3                34
  CLUS_6               1                21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       14     15      2
  7P LOSS WILD-TYPE    100     62     61
D54V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              14               100
  CLUS_2              15                62
  CLUS_3               2                61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P LOSS MUTATED        6      2     13      2      4      1      3
  7P LOSS WILD-TYPE     40     21     36     44     24     28     30
D54V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               6                40
  CLUS_2               2                21
  CLUS_3              13                36
  CLUS_4               2                44
  CLUS_5               4                24
  CLUS_6               1                28
  CLUS_7               3                30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       10      7     15
  7P LOSS WILD-TYPE     97     43     82
D54V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              10                97
  CLUS_2               7                43
  CLUS_3              15                82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        9      6     16      1
  7P LOSS WILD-TYPE     70     46     84     22
D54V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9                70
  CLUS_2               6                46
  CLUS_3              16                84
  CLUS_4               1                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        9     11      3
  7P LOSS WILD-TYPE     74     53     43
D54V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9                74
  CLUS_2              11                53
  CLUS_3               3                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7P LOSS MUTATED        3      1      8      1      1      7      1      1
  7P LOSS WILD-TYPE     21     31     29     23     10     15     20     21
D54V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               1                31
  CLUS_3               8                29
  CLUS_4               1                23
  CLUS_5               1                10
  CLUS_6               7                15
  CLUS_7               1                20
  CLUS_8               1                21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED       12      5     13      4
  7Q LOSS WILD-TYPE     58     81     61     22
D55V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              12                58
  CLUS_2               5                81
  CLUS_3              13                61
  CLUS_4               4                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        6      5     13      4      6      0      0
  7Q LOSS WILD-TYPE     42     41     48     30     41     15      5
D55V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               6                42
  CLUS_2               5                41
  CLUS_3              13                48
  CLUS_4               4                30
  CLUS_5               6                41
  CLUS_6               0                15
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        7     10      9
  7Q LOSS WILD-TYPE     51     90     51
D55V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2              10                90
  CLUS_3               9                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q LOSS MUTATED        4      2      5     10      2      3
  7Q LOSS WILD-TYPE     20     26     34     58     35     19
D55V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               2                26
  CLUS_3               5                34
  CLUS_4              10                58
  CLUS_5               2                35
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       14     15      5
  7Q LOSS WILD-TYPE    100     62     58
D55V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              14               100
  CLUS_2              15                62
  CLUS_3               5                58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        7      3     13      4      2      1      4
  7Q LOSS WILD-TYPE     39     20     36     42     26     28     29
D55V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               7                39
  CLUS_2               3                20
  CLUS_3              13                36
  CLUS_4               4                42
  CLUS_5               2                26
  CLUS_6               1                28
  CLUS_7               4                29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       11      8     15
  7Q LOSS WILD-TYPE     96     42     82
D55V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              11                96
  CLUS_2               8                42
  CLUS_3              15                82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        9      5     17      3
  7Q LOSS WILD-TYPE     70     47     83     20
D55V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               9                70
  CLUS_2               5                47
  CLUS_3              17                83
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       10     12      4
  7Q LOSS WILD-TYPE     73     52     42
D55V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              10                73
  CLUS_2              12                52
  CLUS_3               4                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7Q LOSS MUTATED        3      2      8      3      0      5      2      3
  7Q LOSS WILD-TYPE     21     30     29     21     11     17     19     19
D55V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               2                30
  CLUS_3               8                29
  CLUS_4               3                21
  CLUS_5               0                11
  CLUS_6               5                17
  CLUS_7               2                19
  CLUS_8               3                19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       25      8     23      6
  8P LOSS WILD-TYPE     45     78     51     20
D56V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              25                45
  CLUS_2               8                78
  CLUS_3              23                51
  CLUS_4               6                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED       17      6      8      9     17      2      3
  8P LOSS WILD-TYPE     31     40     53     25     30     13      2
D56V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              17                31
  CLUS_2               6                40
  CLUS_3               8                53
  CLUS_4               9                25
  CLUS_5              17                30
  CLUS_6               2                13
  CLUS_7               3                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       15     32     10
  8P LOSS WILD-TYPE     43     68     50
D56V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              15                43
  CLUS_2              32                68
  CLUS_3              10                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P LOSS MUTATED       11      1     17     12     11      5
  8P LOSS WILD-TYPE     13     27     22     56     26     17
D56V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              11                13
  CLUS_2               1                27
  CLUS_3              17                22
  CLUS_4              12                56
  CLUS_5              11                26
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       34     13     14
  8P LOSS WILD-TYPE     80     64     49
D56V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              34                80
  CLUS_2              13                64
  CLUS_3              14                49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED       16      4      6      7     10      8     10
  8P LOSS WILD-TYPE     30     19     43     39     18     21     23
D56V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              16                30
  CLUS_2               4                19
  CLUS_3               6                43
  CLUS_4               7                39
  CLUS_5              10                18
  CLUS_6               8                21
  CLUS_7              10                23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       31     13     16
  8P LOSS WILD-TYPE     76     37     81
D56V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              31                76
  CLUS_2              13                37
  CLUS_3              16                81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       28     13     16      3
  8P LOSS WILD-TYPE     51     39     84     20
D56V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              28                51
  CLUS_2              13                39
  CLUS_3              16                84
  CLUS_4               3                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       25     12     10
  8P LOSS WILD-TYPE     58     52     36
D56V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              25                58
  CLUS_2              12                52
  CLUS_3              10                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8P LOSS MUTATED       10     11      6      4      1      8      3      4
  8P LOSS WILD-TYPE     14     21     31     20     10     14     18     18
D56V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              10                14
  CLUS_2              11                21
  CLUS_3               6                31
  CLUS_4               4                20
  CLUS_5               1                10
  CLUS_6               8                14
  CLUS_7               3                18
  CLUS_8               4                18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       21      3     19      3
  8Q LOSS WILD-TYPE     49     83     55     23
D57V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              21                49
  CLUS_2               3                83
  CLUS_3              19                55
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED       17      5      9      1     11      2      1
  8Q LOSS WILD-TYPE     31     41     52     33     36     13      4
D57V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              17                31
  CLUS_2               5                41
  CLUS_3               9                52
  CLUS_4               1                33
  CLUS_5              11                36
  CLUS_6               2                13
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       13     20      7
  8Q LOSS WILD-TYPE     45     80     53
D57V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              13                45
  CLUS_2              20                80
  CLUS_3               7                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q LOSS MUTATED       11      1     10      8     10      0
  8Q LOSS WILD-TYPE     13     27     29     60     27     22
D57V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              11                13
  CLUS_2               1                27
  CLUS_3              10                29
  CLUS_4               8                60
  CLUS_5              10                27
  CLUS_6               0                22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       28     11      7
  8Q LOSS WILD-TYPE     86     66     56
D57V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              28                86
  CLUS_2              11                66
  CLUS_3               7                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED       16      4      7      4      5      4      6
  8Q LOSS WILD-TYPE     30     19     42     42     23     25     27
D57V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              16                30
  CLUS_2               4                19
  CLUS_3               7                42
  CLUS_4               4                42
  CLUS_5               5                23
  CLUS_6               4                25
  CLUS_7               6                27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       24     10     12
  8Q LOSS WILD-TYPE     83     40     85
D57V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              24                83
  CLUS_2              10                40
  CLUS_3              12                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       23     10     13      0
  8Q LOSS WILD-TYPE     56     42     87     23
D57V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              23                56
  CLUS_2              10                42
  CLUS_3              13                87
  CLUS_4               0                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       19     13      8
  8Q LOSS WILD-TYPE     64     51     38
D57V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              19                64
  CLUS_2              13                51
  CLUS_3               8                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8Q LOSS MUTATED        9      8      9      3      1      6      3      1
  8Q LOSS WILD-TYPE     15     24     28     21     10     16     18     21
D57V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               8                24
  CLUS_3               9                28
  CLUS_4               3                21
  CLUS_5               1                10
  CLUS_6               6                16
  CLUS_7               3                18
  CLUS_8               1                21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       19     16     42      6
  9P LOSS WILD-TYPE     51     70     32     20
D58V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              19                51
  CLUS_2              16                70
  CLUS_3              42                32
  CLUS_4               6                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED       16     12     20     13     19      1      2
  9P LOSS WILD-TYPE     32     34     41     21     28     14      3
D58V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              16                32
  CLUS_2              12                34
  CLUS_3              20                41
  CLUS_4              13                21
  CLUS_5              19                28
  CLUS_6               1                14
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       15     41     18
  9P LOSS WILD-TYPE     43     59     42
D58V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              15                43
  CLUS_2              41                59
  CLUS_3              18                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P LOSS MUTATED        5     10     17     20     14      8
  9P LOSS WILD-TYPE     19     18     22     48     23     14
D58V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2              10                18
  CLUS_3              17                22
  CLUS_4              20                48
  CLUS_5              14                23
  CLUS_6               8                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       39     20     23
  9P LOSS WILD-TYPE     75     57     40
D58V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              39                75
  CLUS_2              20                57
  CLUS_3              23                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED       16      4     17     19     11      3     12
  9P LOSS WILD-TYPE     30     19     32     27     17     26     21
D58V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              16                30
  CLUS_2               4                19
  CLUS_3              17                32
  CLUS_4              19                27
  CLUS_5              11                17
  CLUS_6               3                26
  CLUS_7              12                21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       32     18     32
  9P LOSS WILD-TYPE     75     32     65
D58V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              32                75
  CLUS_2              18                32
  CLUS_3              32                65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       24     19     31      8
  9P LOSS WILD-TYPE     55     33     69     15
D58V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              24                55
  CLUS_2              19                33
  CLUS_3              31                69
  CLUS_4               8                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       30     17     20
  9P LOSS WILD-TYPE     53     47     26
D58V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              30                53
  CLUS_2              17                47
  CLUS_3              20                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9P LOSS MUTATED        8     11     11     12      1      6      8     10
  9P LOSS WILD-TYPE     16     21     26     12     10     16     13     12
D58V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2              11                21
  CLUS_3              11                26
  CLUS_4              12                12
  CLUS_5               1                10
  CLUS_6               6                16
  CLUS_7               8                13
  CLUS_8              10                12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       13      6     29      3
  9Q LOSS WILD-TYPE     57     80     45     23
D59V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              13                57
  CLUS_2               6                80
  CLUS_3              29                45
  CLUS_4               3                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED       10      6     11     10     12      0      2
  9Q LOSS WILD-TYPE     38     40     50     24     35     15      3
D59V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10                38
  CLUS_2               6                40
  CLUS_3              11                50
  CLUS_4              10                24
  CLUS_5              12                35
  CLUS_6               0                15
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       11     27      9
  9Q LOSS WILD-TYPE     47     73     51
D59V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                47
  CLUS_2              27                73
  CLUS_3               9                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q LOSS MUTATED        5      4     12     11     10      5
  9Q LOSS WILD-TYPE     19     24     27     57     27     17
D59V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               4                24
  CLUS_3              12                27
  CLUS_4              11                57
  CLUS_5              10                27
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       21     12     17
  9Q LOSS WILD-TYPE     93     65     46
D59V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              21                93
  CLUS_2              12                65
  CLUS_3              17                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED       10      1      7     14      6      4      8
  9Q LOSS WILD-TYPE     36     22     42     32     22     25     25
D59V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10                36
  CLUS_2               1                22
  CLUS_3               7                42
  CLUS_4              14                32
  CLUS_5               6                22
  CLUS_6               4                25
  CLUS_7               8                25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       21     10     19
  9Q LOSS WILD-TYPE     86     40     78
D59V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              21                86
  CLUS_2              10                40
  CLUS_3              19                78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       13     11     19      7
  9Q LOSS WILD-TYPE     66     41     81     16
D59V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              13                66
  CLUS_2              11                41
  CLUS_3              19                81
  CLUS_4               7                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       20     13      8
  9Q LOSS WILD-TYPE     63     51     38
D59V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              20                63
  CLUS_2              13                51
  CLUS_3               8                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9Q LOSS MUTATED        5      5      4      6      3      5      4      9
  9Q LOSS WILD-TYPE     19     27     33     18      8     17     17     13
D59V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               5                27
  CLUS_3               4                33
  CLUS_4               6                18
  CLUS_5               3                 8
  CLUS_6               5                17
  CLUS_7               4                17
  CLUS_8               9                13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       39     31     41      9
  10P LOSS WILD-TYPE     31     55     33     17
D60V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               39                 31
  CLUS_2               31                 55
  CLUS_3               41                 33
  CLUS_4                9                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED       25     15     37     14     21      5      3
  10P LOSS WILD-TYPE     23     31     24     20     26     10      2
D60V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               25                 23
  CLUS_2               15                 31
  CLUS_3               37                 24
  CLUS_4               14                 20
  CLUS_5               21                 26
  CLUS_6                5                 10
  CLUS_7                3                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       21     46     35
  10P LOSS WILD-TYPE     37     54     25
D60V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               21                 37
  CLUS_2               46                 54
  CLUS_3               35                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P LOSS MUTATED       11      8     23     33     15     12
  10P LOSS WILD-TYPE     13     20     16     35     22     10
D60V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                8                 20
  CLUS_3               23                 16
  CLUS_4               33                 35
  CLUS_5               15                 22
  CLUS_6               12                 10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       50     44     25
  10P LOSS WILD-TYPE     64     33     38
D60V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               50                 64
  CLUS_2               44                 33
  CLUS_3               25                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED       23      6     34     18     11     11     16
  10P LOSS WILD-TYPE     23     17     15     28     17     18     17
D60V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               23                 23
  CLUS_2                6                 17
  CLUS_3               34                 15
  CLUS_4               18                 28
  CLUS_5               11                 17
  CLUS_6               11                 18
  CLUS_7               16                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       42     24     54
  10P LOSS WILD-TYPE     65     26     43
D60V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               42                 65
  CLUS_2               24                 26
  CLUS_3               54                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       35     22     55      8
  10P LOSS WILD-TYPE     44     30     45     15
D60V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               35                 44
  CLUS_2               22                 30
  CLUS_3               55                 45
  CLUS_4                8                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       35     37     26
  10P LOSS WILD-TYPE     48     27     20
D60V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               35                 48
  CLUS_2               37                 27
  CLUS_3               26                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10P LOSS MUTATED       11     14     23     13      6     10     12      9
  10P LOSS WILD-TYPE     13     18     14     11      5     12      9     13
D60V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               14                 18
  CLUS_3               23                 14
  CLUS_4               13                 11
  CLUS_5                6                  5
  CLUS_6               10                 12
  CLUS_7               12                  9
  CLUS_8                9                 13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       54     28     42      7
  10Q LOSS WILD-TYPE     16     58     32     19
D61V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               54                 16
  CLUS_2               28                 58
  CLUS_3               42                 32
  CLUS_4                7                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED       24     11     50      7     30      5      4
  10Q LOSS WILD-TYPE     24     35     11     27     17     10      1
D61V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               24                 24
  CLUS_2               11                 35
  CLUS_3               50                 11
  CLUS_4                7                 27
  CLUS_5               30                 17
  CLUS_6                5                 10
  CLUS_7                4                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       17     48     45
  10Q LOSS WILD-TYPE     41     52     15
D61V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               17                 41
  CLUS_2               48                 52
  CLUS_3               45                 15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q LOSS MUTATED       13      6     24     44     16      7
  10Q LOSS WILD-TYPE     11     22     15     24     21     15
D61V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               13                 11
  CLUS_2                6                 22
  CLUS_3               24                 15
  CLUS_4               44                 24
  CLUS_5               16                 21
  CLUS_6                7                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       53     59     18
  10Q LOSS WILD-TYPE     61     18     45
D61V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               53                 61
  CLUS_2               59                 18
  CLUS_3               18                 45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED       24      6     44      9     12     15     20
  10Q LOSS WILD-TYPE     22     17      5     37     16     14     13
D61V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               24                 22
  CLUS_2                6                 17
  CLUS_3               44                  5
  CLUS_4                9                 37
  CLUS_5               12                 16
  CLUS_6               15                 14
  CLUS_7               20                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       37     26     68
  10Q LOSS WILD-TYPE     70     24     29
D61V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               37                 70
  CLUS_2               26                 24
  CLUS_3               68                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       35     23     69      4
  10Q LOSS WILD-TYPE     44     29     31     19
D61V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               35                 44
  CLUS_2               23                 29
  CLUS_3               69                 31
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       29     47     26
  10Q LOSS WILD-TYPE     54     17     20
D61V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               29                 54
  CLUS_2               47                 17
  CLUS_3               26                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10Q LOSS MUTATED       12     12     31     14      7     11     10      5
  10Q LOSS WILD-TYPE     12     20      6     10      4     11     11     17
D61V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               12                 12
  CLUS_2               12                 20
  CLUS_3               31                  6
  CLUS_4               14                 10
  CLUS_5                7                  4
  CLUS_6               11                 11
  CLUS_7               10                 11
  CLUS_8                5                 17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       36      8     33     17
  11P LOSS WILD-TYPE     34     78     41      9
D62V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               36                 34
  CLUS_2                8                 78
  CLUS_3               33                 41
  CLUS_4               17                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED       30     10     24     10     16      1      3
  11P LOSS WILD-TYPE     18     36     37     24     31     14      2
D62V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               30                 18
  CLUS_2               10                 36
  CLUS_3               24                 37
  CLUS_4               10                 24
  CLUS_5               16                 31
  CLUS_6                1                 14
  CLUS_7                3                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       22     36     23
  11P LOSS WILD-TYPE     36     64     37
D62V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               36                 64
  CLUS_3               23                 37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P LOSS MUTATED       16      7     10     23     18      7
  11P LOSS WILD-TYPE      8     21     29     45     19     15
D62V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               16                  8
  CLUS_2                7                 21
  CLUS_3               10                 29
  CLUS_4               23                 45
  CLUS_5               18                 19
  CLUS_6                7                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       44     29     21
  11P LOSS WILD-TYPE     70     48     42
D62V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               44                 70
  CLUS_2               29                 48
  CLUS_3               21                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED       23     10     20     17      5      9     10
  11P LOSS WILD-TYPE     23     13     29     29     23     20     23
D62V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               23                 23
  CLUS_2               10                 13
  CLUS_3               20                 29
  CLUS_4               17                 29
  CLUS_5                5                 23
  CLUS_6                9                 20
  CLUS_7               10                 23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       37     21     34
  11P LOSS WILD-TYPE     70     29     63
D62V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               37                 70
  CLUS_2               21                 29
  CLUS_3               34                 63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       32     20     34      6
  11P LOSS WILD-TYPE     47     32     66     17
D62V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               32                 47
  CLUS_2               20                 32
  CLUS_3               34                 66
  CLUS_4                6                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       34     28     16
  11P LOSS WILD-TYPE     49     36     30
D62V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               34                 49
  CLUS_2               28                 36
  CLUS_3               16                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11P LOSS MUTATED       13     18     17      9      2      6      5      8
  11P LOSS WILD-TYPE     11     14     20     15      9     16     16     14
D62V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               13                 11
  CLUS_2               18                 14
  CLUS_3               17                 20
  CLUS_4                9                 15
  CLUS_5                2                  9
  CLUS_6                6                 16
  CLUS_7                5                 16
  CLUS_8                8                 14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       36      8     29     18
  11Q LOSS WILD-TYPE     34     78     45      8
D63V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               36                 34
  CLUS_2                8                 78
  CLUS_3               29                 45
  CLUS_4               18                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED       30     12     19     10     16      1      3
  11Q LOSS WILD-TYPE     18     34     42     24     31     14      2
D63V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               30                 18
  CLUS_2               12                 34
  CLUS_3               19                 42
  CLUS_4               10                 24
  CLUS_5               16                 31
  CLUS_6                1                 14
  CLUS_7                3                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       24     38     16
  11Q LOSS WILD-TYPE     34     62     44
D63V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               24                 34
  CLUS_2               38                 62
  CLUS_3               16                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q LOSS MUTATED       15      9     10     15     19     10
  11Q LOSS WILD-TYPE      9     19     29     53     18     12
D63V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               15                  9
  CLUS_2                9                 19
  CLUS_3               10                 29
  CLUS_4               15                 53
  CLUS_5               19                 18
  CLUS_6               10                 12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       45     23     22
  11Q LOSS WILD-TYPE     69     54     41
D63V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               45                 69
  CLUS_2               23                 54
  CLUS_3               22                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED       23     11     16     19      4      6     11
  11Q LOSS WILD-TYPE     23     12     33     27     24     23     22
D63V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               23                 23
  CLUS_2               11                 12
  CLUS_3               16                 33
  CLUS_4               19                 27
  CLUS_5                4                 24
  CLUS_6                6                 23
  CLUS_7               11                 22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       39     20     30
  11Q LOSS WILD-TYPE     68     30     67
D63V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               39                 68
  CLUS_2               20                 30
  CLUS_3               30                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       31     20     31      7
  11Q LOSS WILD-TYPE     48     32     69     16
D63V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               31                 48
  CLUS_2               20                 32
  CLUS_3               31                 69
  CLUS_4                7                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       34     24     17
  11Q LOSS WILD-TYPE     49     40     29
D63V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               34                 49
  CLUS_2               24                 40
  CLUS_3               17                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11Q LOSS MUTATED       12     20     12     12      2      4      5      8
  11Q LOSS WILD-TYPE     12     12     25     12      9     18     16     14
D63V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               12                 12
  CLUS_2               20                 12
  CLUS_3               12                 25
  CLUS_4               12                 12
  CLUS_5                2                  9
  CLUS_6                4                 18
  CLUS_7                5                 16
  CLUS_8                8                 14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED       31      7     18      9
  12P LOSS WILD-TYPE     39     79     56     17
D64V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               31                 39
  CLUS_2                7                 79
  CLUS_3               18                 56
  CLUS_4                9                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P LOSS MUTATED       20      6     20      4     14      1      0
  12P LOSS WILD-TYPE     28     40     41     30     33     14      5
D64V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               20                 28
  CLUS_2                6                 40
  CLUS_3               20                 41
  CLUS_4                4                 30
  CLUS_5               14                 33
  CLUS_6                1                 14
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       13     29     17
  12P LOSS WILD-TYPE     45     71     43
D64V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               29                 71
  CLUS_3               17                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P LOSS MUTATED       10      6     10     17     12      4
  12P LOSS WILD-TYPE     14     22     29     51     25     18
D64V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                6                 22
  CLUS_3               10                 29
  CLUS_4               17                 51
  CLUS_5               12                 25
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       36     20      8
  12P LOSS WILD-TYPE     78     57     55
D64V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               36                 78
  CLUS_2               20                 57
  CLUS_3                8                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P LOSS MUTATED       21      5     14      5      5      6      8
  12P LOSS WILD-TYPE     25     18     35     41     23     23     25
D64V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               21                 25
  CLUS_2                5                 18
  CLUS_3               14                 35
  CLUS_4                5                 41
  CLUS_5                5                 23
  CLUS_6                6                 23
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       27     14     24
  12P LOSS WILD-TYPE     80     36     73
D64V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               27                 80
  CLUS_2               14                 36
  CLUS_3               24                 73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED       24     11     26      4
  12P LOSS WILD-TYPE     55     41     74     19
D64V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               24                 55
  CLUS_2               11                 41
  CLUS_3               26                 74
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       21     16     14
  12P LOSS WILD-TYPE     62     48     32
D64V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               21                 62
  CLUS_2               16                 48
  CLUS_3               14                 32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12P LOSS MUTATED       11     10      8      5      4      5      4      4
  12P LOSS WILD-TYPE     13     22     29     19      7     17     17     18
D64V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               10                 22
  CLUS_3                8                 29
  CLUS_4                5                 19
  CLUS_5                4                  7
  CLUS_6                5                 17
  CLUS_7                4                 17
  CLUS_8                4                 18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       24      5     16      9
  12Q LOSS WILD-TYPE     46     81     58     17
D65V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               24                 46
  CLUS_2                5                 81
  CLUS_3               16                 58
  CLUS_4                9                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q LOSS MUTATED       15      5     19      4     10      1      0
  12Q LOSS WILD-TYPE     33     41     42     30     37     14      5
D65V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               15                 33
  CLUS_2                5                 41
  CLUS_3               19                 42
  CLUS_4                4                 30
  CLUS_5               10                 37
  CLUS_6                1                 14
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       11     21     15
  12Q LOSS WILD-TYPE     47     79     45
D65V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               21                 79
  CLUS_3               15                 45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q LOSS MUTATED        9      4      9     14      7      4
  12Q LOSS WILD-TYPE     15     24     30     54     30     18
D65V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                4                 24
  CLUS_3                9                 30
  CLUS_4               14                 54
  CLUS_5                7                 30
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       25     20      9
  12Q LOSS WILD-TYPE     89     57     54
D65V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               25                 89
  CLUS_2               20                 57
  CLUS_3                9                 54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q LOSS MUTATED       16      3     15      4      5      5      6
  12Q LOSS WILD-TYPE     30     20     34     42     23     24     27
D65V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               16                 30
  CLUS_2                3                 20
  CLUS_3               15                 34
  CLUS_4                4                 42
  CLUS_5                5                 23
  CLUS_6                5                 24
  CLUS_7                6                 27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       21     11     22
  12Q LOSS WILD-TYPE     86     39     75
D65V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               21                 86
  CLUS_2               11                 39
  CLUS_3               22                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       19      7     24      4
  12Q LOSS WILD-TYPE     60     45     76     19
D65V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               19                 60
  CLUS_2                7                 45
  CLUS_3               24                 76
  CLUS_4                4                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       17     17      9
  12Q LOSS WILD-TYPE     66     47     37
D65V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               17                 66
  CLUS_2               17                 47
  CLUS_3                9                 37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12Q LOSS MUTATED        7      7     11      2      4      5      3      4
  12Q LOSS WILD-TYPE     17     25     26     22      7     17     18     18
D65V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                7                 25
  CLUS_3               11                 26
  CLUS_4                2                 22
  CLUS_5                4                  7
  CLUS_6                5                 17
  CLUS_7                3                 18
  CLUS_8                4                 18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       39     25     57     11
  13Q LOSS WILD-TYPE     31     61     17     15
D66V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               39                 31
  CLUS_2               25                 61
  CLUS_3               57                 17
  CLUS_4               11                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED       26     20     36     11     34      3      2
  13Q LOSS WILD-TYPE     22     26     25     23     13     12      3
D66V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               26                 22
  CLUS_2               20                 26
  CLUS_3               36                 25
  CLUS_4               11                 23
  CLUS_5               34                 13
  CLUS_6                3                 12
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       21     61     33
  13Q LOSS WILD-TYPE     37     39     27
D66V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               21                 37
  CLUS_2               61                 39
  CLUS_3               33                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q LOSS MUTATED       10     12     28     33     24      8
  13Q LOSS WILD-TYPE     14     16     11     35     13     14
D66V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2               12                 16
  CLUS_3               28                 11
  CLUS_4               33                 35
  CLUS_5               24                 13
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       64     41     25
  13Q LOSS WILD-TYPE     50     36     38
D66V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               64                 50
  CLUS_2               41                 36
  CLUS_3               25                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED       25      9     30     14     21     11     20
  13Q LOSS WILD-TYPE     21     14     19     32      7     18     13
D66V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               25                 21
  CLUS_2                9                 14
  CLUS_3               30                 19
  CLUS_4               14                 32
  CLUS_5               21                  7
  CLUS_6               11                 18
  CLUS_7               20                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       50     27     54
  13Q LOSS WILD-TYPE     57     23     43
D66V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               50                 57
  CLUS_2               27                 23
  CLUS_3               54                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       44     25     54      8
  13Q LOSS WILD-TYPE     35     27     46     15
D66V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               44                 35
  CLUS_2               25                 27
  CLUS_3               54                 46
  CLUS_4                8                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       39     34     30
  13Q LOSS WILD-TYPE     44     30     16
D66V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               39                 44
  CLUS_2               34                 30
  CLUS_3               30                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  13Q LOSS MUTATED        9     17     23     14      3     14     14      9
  13Q LOSS WILD-TYPE     15     15     14     10      8      8      7     13
D66V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                9                 15
  CLUS_2               17                 15
  CLUS_3               23                 14
  CLUS_4               14                 10
  CLUS_5                3                  8
  CLUS_6               14                  8
  CLUS_7               14                  7
  CLUS_8                9                 13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       20     14     19      9
  14Q LOSS WILD-TYPE     50     72     55     17
D67V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               20                 50
  CLUS_2               14                 72
  CLUS_3               19                 55
  CLUS_4                9                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED       17      8     14      4     13      5      1
  14Q LOSS WILD-TYPE     31     38     47     30     34     10      4
D67V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               17                 31
  CLUS_2                8                 38
  CLUS_3               14                 47
  CLUS_4                4                 30
  CLUS_5               13                 34
  CLUS_6                5                 10
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       15     23     17
  14Q LOSS WILD-TYPE     43     77     43
D67V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               23                 77
  CLUS_3               17                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q LOSS MUTATED        8      7      7     17     10      6
  14Q LOSS WILD-TYPE     16     21     32     51     27     16
D67V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                7                 21
  CLUS_3                7                 32
  CLUS_4               17                 51
  CLUS_5               10                 27
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       29     22     11
  14Q LOSS WILD-TYPE     85     55     52
D67V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               29                 85
  CLUS_2               22                 55
  CLUS_3               11                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED       17      5      6      8      1     15     10
  14Q LOSS WILD-TYPE     29     18     43     38     27     14     23
D67V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               17                 29
  CLUS_2                5                 18
  CLUS_3                6                 43
  CLUS_4                8                 38
  CLUS_5                1                 27
  CLUS_6               15                 14
  CLUS_7               10                 23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       21     14     27
  14Q LOSS WILD-TYPE     86     36     70
D67V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               21                 86
  CLUS_2               14                 36
  CLUS_3               27                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       19     12     30      1
  14Q LOSS WILD-TYPE     60     40     70     22
D67V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               19                 60
  CLUS_2               12                 40
  CLUS_3               30                 70
  CLUS_4                1                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       16     17     12
  14Q LOSS WILD-TYPE     67     47     34
D67V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               16                 67
  CLUS_2               17                 47
  CLUS_3               12                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  14Q LOSS MUTATED        6     11      7     10      3      3      4      1
  14Q LOSS WILD-TYPE     18     21     30     14      8     19     17     21
D67V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2               11                 21
  CLUS_3                7                 30
  CLUS_4               10                 14
  CLUS_5                3                  8
  CLUS_6                3                 19
  CLUS_7                4                 17
  CLUS_8                1                 21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       17      7     15      6
  15Q LOSS WILD-TYPE     53     79     59     20
D68V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               17                 53
  CLUS_2                7                 79
  CLUS_3               15                 59
  CLUS_4                6                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED       14      6      5      4     13      3      0
  15Q LOSS WILD-TYPE     34     40     56     30     34     12      5
D68V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               14                 34
  CLUS_2                6                 40
  CLUS_3                5                 56
  CLUS_4                4                 30
  CLUS_5               13                 34
  CLUS_6                3                 12
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        7     25      8
  15Q LOSS WILD-TYPE     51     75     52
D68V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                 51
  CLUS_2               25                 75
  CLUS_3                8                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q LOSS MUTATED        6      4     11      6      8      5
  15Q LOSS WILD-TYPE     18     24     28     62     29     17
D68V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                4                 24
  CLUS_3               11                 28
  CLUS_4                6                 62
  CLUS_5                8                 29
  CLUS_6                5                 17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       26      8     11
  15Q LOSS WILD-TYPE     88     69     52
D68V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               26                 88
  CLUS_2                8                 69
  CLUS_3               11                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED       10      6      2      8      5      6      8
  15Q LOSS WILD-TYPE     36     17     47     38     23     23     25
D68V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 36
  CLUS_2                6                 17
  CLUS_3                2                 47
  CLUS_4                8                 38
  CLUS_5                5                 23
  CLUS_6                6                 23
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       21     14     10
  15Q LOSS WILD-TYPE     86     36     87
D68V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               21                 86
  CLUS_2               14                 36
  CLUS_3               10                 87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       21     11     11      2
  15Q LOSS WILD-TYPE     58     41     89     21
D68V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               21                 58
  CLUS_2               11                 41
  CLUS_3               11                 89
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       18      6     13
  15Q LOSS WILD-TYPE     65     58     33
D68V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               18                 65
  CLUS_2                6                 58
  CLUS_3               13                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  15Q LOSS MUTATED        9      8      3      4      1      6      4      2
  15Q LOSS WILD-TYPE     15     24     34     20     10     16     17     20
D68V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                8                 24
  CLUS_3                3                 34
  CLUS_4                4                 20
  CLUS_5                1                 10
  CLUS_6                6                 16
  CLUS_7                4                 17
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       26     12     31      6
  16P LOSS WILD-TYPE     44     74     43     20
D69V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               26                 44
  CLUS_2               12                 74
  CLUS_3               31                 43
  CLUS_4                6                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED       16      9     17      6     24      2      1
  16P LOSS WILD-TYPE     32     37     44     28     23     13      4
D69V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               16                 32
  CLUS_2                9                 37
  CLUS_3               17                 44
  CLUS_4                6                 28
  CLUS_5               24                 23
  CLUS_6                2                 13
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       15     37     15
  16P LOSS WILD-TYPE     43     63     45
D69V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               37                 63
  CLUS_3               15                 45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P LOSS MUTATED        9      4     17     16     14      7
  16P LOSS WILD-TYPE     15     24     22     52     23     15
D69V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                4                 24
  CLUS_3               17                 22
  CLUS_4               16                 52
  CLUS_5               14                 23
  CLUS_6                7                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       36     21     18
  16P LOSS WILD-TYPE     78     56     45
D69V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               36                 78
  CLUS_2               21                 56
  CLUS_3               18                 45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED       15      5     12      8     12      8     15
  16P LOSS WILD-TYPE     31     18     37     38     16     21     18
D69V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               15                 31
  CLUS_2                5                 18
  CLUS_3               12                 37
  CLUS_4                8                 38
  CLUS_5               12                 16
  CLUS_6                8                 21
  CLUS_7               15                 18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       29     20     25
  16P LOSS WILD-TYPE     78     30     72
D69V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               29                 78
  CLUS_2               20                 30
  CLUS_3               25                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       25     17     27      5
  16P LOSS WILD-TYPE     54     35     73     18
D69V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               25                 54
  CLUS_2               17                 35
  CLUS_3               27                 73
  CLUS_4                5                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       21     21     19
  16P LOSS WILD-TYPE     62     43     27
D69V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               21                 62
  CLUS_2               21                 43
  CLUS_3               19                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16P LOSS MUTATED        8      7     12      9      4      8      9      4
  16P LOSS WILD-TYPE     16     25     25     15      7     14     12     18
D69V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                7                 25
  CLUS_3               12                 25
  CLUS_4                9                 15
  CLUS_5                4                  7
  CLUS_6                8                 14
  CLUS_7                9                 12
  CLUS_8                4                 18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       44     27     44      9
  16Q LOSS WILD-TYPE     26     59     30     17
D70V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               44                 26
  CLUS_2               27                 59
  CLUS_3               44                 30
  CLUS_4                9                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED       24     13     43     10     27      5      2
  16Q LOSS WILD-TYPE     24     33     18     24     20     10      3
D70V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               24                 24
  CLUS_2               13                 33
  CLUS_3               43                 18
  CLUS_4               10                 24
  CLUS_5               27                 20
  CLUS_6                5                 10
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       17     49     39
  16Q LOSS WILD-TYPE     41     51     21
D70V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               17                 41
  CLUS_2               49                 51
  CLUS_3               39                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q LOSS MUTATED       11      6     23     39     18      8
  16Q LOSS WILD-TYPE     13     22     16     29     19     14
D70V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                6                 22
  CLUS_3               23                 16
  CLUS_4               39                 29
  CLUS_5               18                 19
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       52     50     21
  16Q LOSS WILD-TYPE     62     27     42
D70V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               52                 62
  CLUS_2               50                 27
  CLUS_3               21                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED       25      6     34     11     14     16     17
  16Q LOSS WILD-TYPE     21     17     15     35     14     13     16
D70V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               25                 21
  CLUS_2                6                 17
  CLUS_3               34                 15
  CLUS_4               11                 35
  CLUS_5               14                 14
  CLUS_6               16                 13
  CLUS_7               17                 16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       41     24     58
  16Q LOSS WILD-TYPE     66     26     39
D70V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               41                 66
  CLUS_2               24                 26
  CLUS_3               58                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       37     20     59      7
  16Q LOSS WILD-TYPE     42     32     41     16
D70V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               37                 42
  CLUS_2               20                 32
  CLUS_3               59                 41
  CLUS_4                7                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       29     44     26
  16Q LOSS WILD-TYPE     54     20     20
D70V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               29                 54
  CLUS_2               44                 20
  CLUS_3               26                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16Q LOSS MUTATED       13     10     30     11      7     10     12      6
  16Q LOSS WILD-TYPE     11     22      7     13      4     12      9     16
D70V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               13                 11
  CLUS_2               10                 22
  CLUS_3               30                  7
  CLUS_4               11                 13
  CLUS_5                7                  4
  CLUS_6               10                 12
  CLUS_7               12                  9
  CLUS_8                6                 16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       13     16     22      6
  17P LOSS WILD-TYPE     57     70     52     20
D71V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               13                 57
  CLUS_2               16                 70
  CLUS_3               22                 52
  CLUS_4                6                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED        6      9     16     10     14      1      1
  17P LOSS WILD-TYPE     42     37     45     24     33     14      4
D71V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                6                 42
  CLUS_2                9                 37
  CLUS_3               16                 45
  CLUS_4               10                 24
  CLUS_5               14                 33
  CLUS_6                1                 14
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       12     23     13
  17P LOSS WILD-TYPE     46     77     47
D71V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               12                 46
  CLUS_2               23                 77
  CLUS_3               13                 47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P LOSS MUTATED        5      3     17     13      4      6
  17P LOSS WILD-TYPE     19     25     22     55     33     16
D71V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                3                 25
  CLUS_3               17                 22
  CLUS_4               13                 55
  CLUS_5                4                 33
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       25     18     14
  17P LOSS WILD-TYPE     89     59     49
D71V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               25                 89
  CLUS_2               18                 59
  CLUS_3               14                 49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED        6      6     14      9      8      4     10
  17P LOSS WILD-TYPE     40     17     35     37     20     25     23
D71V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                6                 40
  CLUS_2                6                 17
  CLUS_3               14                 35
  CLUS_4                9                 37
  CLUS_5                8                 20
  CLUS_6                4                 25
  CLUS_7               10                 23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       21     10     25
  17P LOSS WILD-TYPE     86     40     72
D71V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               21                 86
  CLUS_2               10                 40
  CLUS_3               25                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       15     10     25      6
  17P LOSS WILD-TYPE     64     42     75     17
D71V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               15                 64
  CLUS_2               10                 42
  CLUS_3               25                 75
  CLUS_4                6                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       15     18     12
  17P LOSS WILD-TYPE     68     46     34
D71V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               15                 68
  CLUS_2               18                 46
  CLUS_3               12                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17P LOSS MUTATED        5      4     10     10      2      4      4      6
  17P LOSS WILD-TYPE     19     28     27     14      9     18     17     16
D71V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                4                 28
  CLUS_3               10                 27
  CLUS_4               10                 14
  CLUS_5                2                  9
  CLUS_6                4                 18
  CLUS_7                4                 17
  CLUS_8                6                 16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       15      6     21      6
  17Q LOSS WILD-TYPE     55     80     53     20
D72V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               15                 55
  CLUS_2                6                 80
  CLUS_3               21                 53
  CLUS_4                6                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        7      6     14      8     12      0      1
  17Q LOSS WILD-TYPE     41     40     47     26     35     15      4
D72V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                7                 41
  CLUS_2                6                 40
  CLUS_3               14                 47
  CLUS_4                8                 26
  CLUS_5               12                 35
  CLUS_6                0                 15
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       10     21     13
  17Q LOSS WILD-TYPE     48     79     47
D72V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                 48
  CLUS_2               21                 79
  CLUS_3               13                 47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q LOSS MUTATED        4      2     15     13      4      6
  17Q LOSS WILD-TYPE     20     26     24     55     33     16
D72V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                2                 26
  CLUS_3               15                 24
  CLUS_4               13                 55
  CLUS_5                4                 33
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       21     15     12
  17Q LOSS WILD-TYPE     93     62     51
D72V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               21                 93
  CLUS_2               15                 62
  CLUS_3               12                 51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        8      4     13      8      5      2      8
  17Q LOSS WILD-TYPE     38     19     36     38     23     27     25
D72V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 38
  CLUS_2                4                 19
  CLUS_3               13                 36
  CLUS_4                8                 38
  CLUS_5                5                 23
  CLUS_6                2                 27
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       19      8     20
  17Q LOSS WILD-TYPE     88     42     77
D72V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               19                 88
  CLUS_2                8                 42
  CLUS_3               20                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       14      7     21      5
  17Q LOSS WILD-TYPE     65     45     79     18
D72V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               14                 65
  CLUS_2                7                 45
  CLUS_3               21                 79
  CLUS_4                5                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       15     15      6
  17Q LOSS WILD-TYPE     68     49     40
D72V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               15                 68
  CLUS_2               15                 49
  CLUS_3                6                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17Q LOSS MUTATED        3      4      8      7      1      4      3      6
  17Q LOSS WILD-TYPE     21     28     29     17     10     18     18     16
D72V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                4                 28
  CLUS_3                8                 29
  CLUS_4                7                 17
  CLUS_5                1                 10
  CLUS_6                4                 18
  CLUS_7                3                 18
  CLUS_8                6                 16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       19     11     24      8
  18P LOSS WILD-TYPE     51     75     50     18
D73V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               19                 51
  CLUS_2               11                 75
  CLUS_3               24                 50
  CLUS_4                8                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED       12      8     15      7     18      2      0
  18P LOSS WILD-TYPE     36     38     46     27     29     13      5
D73V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               12                 36
  CLUS_2                8                 38
  CLUS_3               15                 46
  CLUS_4                7                 27
  CLUS_5               18                 29
  CLUS_6                2                 13
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       11     30     15
  18P LOSS WILD-TYPE     47     70     45
D73V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               30                 70
  CLUS_3               15                 45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P LOSS MUTATED        4      4     18     14      8      8
  18P LOSS WILD-TYPE     20     24     21     54     29     14
D73V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                4                 24
  CLUS_3               18                 21
  CLUS_4               14                 54
  CLUS_5                8                 29
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       30     17     15
  18P LOSS WILD-TYPE     84     60     48
D73V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               30                 84
  CLUS_2               17                 60
  CLUS_3               15                 48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED       11      4     11      9      9      6     12
  18P LOSS WILD-TYPE     35     19     38     37     19     23     21
D73V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 35
  CLUS_2                4                 19
  CLUS_3               11                 38
  CLUS_4                9                 37
  CLUS_5                9                 19
  CLUS_6                6                 23
  CLUS_7               12                 21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       27     11     23
  18P LOSS WILD-TYPE     80     39     74
D73V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               27                 80
  CLUS_2               11                 39
  CLUS_3               23                 74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       22     11     23      5
  18P LOSS WILD-TYPE     57     41     77     18
D73V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               22                 57
  CLUS_2               11                 41
  CLUS_3               23                 77
  CLUS_4                5                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       22     14     15
  18P LOSS WILD-TYPE     61     50     31
D73V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               22                 61
  CLUS_2               14                 50
  CLUS_3               15                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18P LOSS MUTATED        2      9      9      8      2      8      7      6
  18P LOSS WILD-TYPE     22     23     28     16      9     14     14     16
D73V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                9                 23
  CLUS_3                9                 28
  CLUS_4                8                 16
  CLUS_5                2                  9
  CLUS_6                8                 14
  CLUS_7                7                 14
  CLUS_8                6                 16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       23     10     30      9
  18Q LOSS WILD-TYPE     47     76     44     17
D74V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               23                 47
  CLUS_2               10                 76
  CLUS_3               30                 44
  CLUS_4                9                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED       13     11     13      7     25      2      1
  18Q LOSS WILD-TYPE     35     35     48     27     22     13      4
D74V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               13                 35
  CLUS_2               11                 35
  CLUS_3               13                 48
  CLUS_4                7                 27
  CLUS_5               25                 22
  CLUS_6                2                 13
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       14     38     11
  18Q LOSS WILD-TYPE     44     62     49
D74V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               14                 44
  CLUS_2               38                 62
  CLUS_3               11                 49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q LOSS MUTATED        5      7     21      9     12      9
  18Q LOSS WILD-TYPE     19     21     18     59     25     13
D74V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                7                 21
  CLUS_3               21                 18
  CLUS_4                9                 59
  CLUS_5               12                 25
  CLUS_6                9                 13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       40     15     17
  18Q LOSS WILD-TYPE     74     62     46
D74V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               40                 74
  CLUS_2               15                 62
  CLUS_3               17                 46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED       12      6     11     11     15      4     13
  18Q LOSS WILD-TYPE     34     17     38     35     13     25     20
D74V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               12                 34
  CLUS_2                6                 17
  CLUS_3               11                 38
  CLUS_4               11                 35
  CLUS_5               15                 13
  CLUS_6                4                 25
  CLUS_7               13                 20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       31     17     24
  18Q LOSS WILD-TYPE     76     33     73
D74V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               31                 76
  CLUS_2               17                 33
  CLUS_3               24                 73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       27     15     24      6
  18Q LOSS WILD-TYPE     52     37     76     17
D74V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               27                 52
  CLUS_2               15                 37
  CLUS_3               24                 76
  CLUS_4                6                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       26     16     19
  18Q LOSS WILD-TYPE     57     48     27
D74V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               26                 57
  CLUS_2               16                 48
  CLUS_3               19                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18Q LOSS MUTATED        3      9      9     11      1     12     10      6
  18Q LOSS WILD-TYPE     21     23     28     13     10     10     11     16
D74V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                9                 23
  CLUS_3                9                 28
  CLUS_4               11                 13
  CLUS_5                1                 10
  CLUS_6               12                 10
  CLUS_7               10                 11
  CLUS_8                6                 16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       10      2      6      3
  19P LOSS WILD-TYPE     60     84     68     23
D75V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               10                 60
  CLUS_2                2                 84
  CLUS_3                6                 68
  CLUS_4                3                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        1      1      3      3     12      1      0
  19P LOSS WILD-TYPE     47     45     58     31     35     14      5
D75V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                1                 45
  CLUS_3                3                 58
  CLUS_4                3                 31
  CLUS_5               12                 35
  CLUS_6                1                 14
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        5     11      4
  19P LOSS WILD-TYPE     53     89     56
D75V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 53
  CLUS_2               11                 89
  CLUS_3                4                 56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P LOSS MUTATED        1      2      6      4      3      4
  19P LOSS WILD-TYPE     23     26     33     64     34     18
D75V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                2                 26
  CLUS_3                6                 33
  CLUS_4                4                 64
  CLUS_5                3                 34
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       10      4      7
  19P LOSS WILD-TYPE    104     73     56
D75V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               10                104
  CLUS_2                4                 73
  CLUS_3                7                 56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        1      1      1      4      5      3      6
  19P LOSS WILD-TYPE     45     22     48     42     23     26     27
D75V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                1                 22
  CLUS_3                1                 48
  CLUS_4                4                 42
  CLUS_5                5                 23
  CLUS_6                3                 26
  CLUS_7                6                 27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        8      6      6
  19P LOSS WILD-TYPE     99     44     91
D75V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                8                 99
  CLUS_2                6                 44
  CLUS_3                6                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        8      4      6      2
  19P LOSS WILD-TYPE     71     48     94     21
D75V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                8                 71
  CLUS_2                4                 48
  CLUS_3                6                 94
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        7      5      6
  19P LOSS WILD-TYPE     76     59     40
D75V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 76
  CLUS_2                5                 59
  CLUS_3                6                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19P LOSS MUTATED        0      1      1      4      2      5      3      2
  19P LOSS WILD-TYPE     24     31     36     20      9     17     18     20
D75V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                1                 31
  CLUS_3                1                 36
  CLUS_4                4                 20
  CLUS_5                2                  9
  CLUS_6                5                 17
  CLUS_7                3                 18
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       12      6     16      5
  19Q LOSS WILD-TYPE     58     80     58     21
D76V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               12                 58
  CLUS_2                6                 80
  CLUS_3               16                 58
  CLUS_4                5                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        4      3     10      5     14      3      0
  19Q LOSS WILD-TYPE     44     43     51     29     33     12      5
D76V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                3                 43
  CLUS_3               10                 51
  CLUS_4                5                 29
  CLUS_5               14                 33
  CLUS_6                3                 12
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        7     18      9
  19Q LOSS WILD-TYPE     51     82     51
D76V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                 51
  CLUS_2               18                 82
  CLUS_3                9                 51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q LOSS MUTATED        2      3      9     10      6      4
  19Q LOSS WILD-TYPE     22     25     30     58     31     18
D76V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                3                 25
  CLUS_3                9                 30
  CLUS_4               10                 58
  CLUS_5                6                 31
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       17     13      9
  19Q LOSS WILD-TYPE     97     64     54
D76V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               17                 97
  CLUS_2               13                 64
  CLUS_3                9                 54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        3      3      7      7      6      6      7
  19Q LOSS WILD-TYPE     43     20     42     39     22     23     26
D76V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                3                 20
  CLUS_3                7                 42
  CLUS_4                7                 39
  CLUS_5                6                 22
  CLUS_6                6                 23
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       15      8     15
  19Q LOSS WILD-TYPE     92     42     82
D76V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               15                 92
  CLUS_2                8                 42
  CLUS_3               15                 82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       12      8     15      3
  19Q LOSS WILD-TYPE     67     44     85     20
D76V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               12                 67
  CLUS_2                8                 44
  CLUS_3               15                 85
  CLUS_4                3                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       12     10     10
  19Q LOSS WILD-TYPE     71     54     36
D76V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               12                 71
  CLUS_2               10                 54
  CLUS_3               10                 36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19Q LOSS MUTATED        0      4      6      5      2      5      6      4
  19Q LOSS WILD-TYPE     24     28     31     19      9     17     15     18
D76V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                4                 28
  CLUS_3                6                 31
  CLUS_4                5                 19
  CLUS_5                2                  9
  CLUS_6                5                 17
  CLUS_7                6                 15
  CLUS_8                4                 18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       23     12     15      5
  20P LOSS WILD-TYPE     47     74     59     21
D77V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               23                 47
  CLUS_2               12                 74
  CLUS_3               15                 59
  CLUS_4                5                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED       12     10     17      0     14      1      1
  20P LOSS WILD-TYPE     36     36     44     34     33     14      4
D77V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               12                 36
  CLUS_2               10                 36
  CLUS_3               17                 44
  CLUS_4                0                 34
  CLUS_5               14                 33
  CLUS_6                1                 14
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       10     23     12
  20P LOSS WILD-TYPE     48     77     48
D77V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                 48
  CLUS_2               23                 77
  CLUS_3               12                 48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P LOSS MUTATED        8      5     14     12      4      2
  20P LOSS WILD-TYPE     16     23     25     56     33     20
D77V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                5                 23
  CLUS_3               14                 25
  CLUS_4               12                 56
  CLUS_5                4                 33
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       31     16      7
  20P LOSS WILD-TYPE     83     61     56
D77V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               31                 83
  CLUS_2               16                 61
  CLUS_3                7                 56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED       10      7     13      4      9      3      8
  20P LOSS WILD-TYPE     36     16     36     42     19     26     25
D77V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                 36
  CLUS_2                7                 16
  CLUS_3               13                 36
  CLUS_4                4                 42
  CLUS_5                9                 19
  CLUS_6                3                 26
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       21     12     21
  20P LOSS WILD-TYPE     86     38     76
D77V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               21                 86
  CLUS_2               12                 38
  CLUS_3               21                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       23     10     21      0
  20P LOSS WILD-TYPE     56     42     79     23
D77V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               23                 56
  CLUS_2               10                 42
  CLUS_3               21                 79
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       13     16     15
  20P LOSS WILD-TYPE     70     48     31
D77V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               13                 70
  CLUS_2               16                 48
  CLUS_3               15                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20P LOSS MUTATED        8      5     10      6      1      6      8      0
  20P LOSS WILD-TYPE     16     27     27     18     10     16     13     22
D77V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                5                 27
  CLUS_3               10                 27
  CLUS_4                6                 18
  CLUS_5                1                 10
  CLUS_6                6                 16
  CLUS_7                8                 13
  CLUS_8                0                 22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED       12      6      5      2
  20Q LOSS WILD-TYPE     58     80     69     24
D78V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               12                 58
  CLUS_2                6                 80
  CLUS_3                5                 69
  CLUS_4                2                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        7      6      7      0      4      1      0
  20Q LOSS WILD-TYPE     41     40     54     34     43     14      5
D78V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                 41
  CLUS_2                6                 40
  CLUS_3                7                 54
  CLUS_4                0                 34
  CLUS_5                4                 43
  CLUS_6                1                 14
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        7      8      5
  20Q LOSS WILD-TYPE     51     92     55
D78V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                 51
  CLUS_2                8                 92
  CLUS_3                5                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q LOSS MUTATED        5      4      3      5      3      0
  20Q LOSS WILD-TYPE     19     24     36     63     34     22
D78V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                4                 24
  CLUS_3                3                 36
  CLUS_4                5                 63
  CLUS_5                3                 34
  CLUS_6                0                 22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       14      7      4
  20Q LOSS WILD-TYPE    100     70     59
D78V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               14                100
  CLUS_2                7                 70
  CLUS_3                4                 59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        7      3      5      2      3      2      3
  20Q LOSS WILD-TYPE     39     20     44     44     25     27     30
D78V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                 39
  CLUS_2                3                 20
  CLUS_3                5                 44
  CLUS_4                2                 44
  CLUS_5                3                 25
  CLUS_6                2                 27
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        9      7      9
  20Q LOSS WILD-TYPE     98     43     88
D78V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                9                 98
  CLUS_2                7                 43
  CLUS_3                9                 88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED       12      3     10      0
  20Q LOSS WILD-TYPE     67     49     90     23
D78V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               12                 67
  CLUS_2                3                 49
  CLUS_3               10                 90
  CLUS_4                0                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        5      8      8
  20Q LOSS WILD-TYPE     78     56     38
D78V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                 78
  CLUS_2                8                 56
  CLUS_3                8                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20Q LOSS MUTATED        6      2      3      4      1      2      3      0
  20Q LOSS WILD-TYPE     18     30     34     20     10     20     18     22
D78V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                2                 30
  CLUS_3                3                 34
  CLUS_4                4                 20
  CLUS_5                1                 10
  CLUS_6                2                 20
  CLUS_7                3                 18
  CLUS_8                0                 22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       12      8     24      6
  21Q LOSS WILD-TYPE     58     78     50     20
D79V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               12                 58
  CLUS_2                8                 78
  CLUS_3               24                 50
  CLUS_4                6                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED       13      7     10      2     16      1      1
  21Q LOSS WILD-TYPE     35     39     51     32     31     14      4
D79V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                 35
  CLUS_2                7                 39
  CLUS_3               10                 51
  CLUS_4                2                 32
  CLUS_5               16                 31
  CLUS_6                1                 14
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        9     26     10
  21Q LOSS WILD-TYPE     49     74     50
D79V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                9                 49
  CLUS_2               26                 74
  CLUS_3               10                 50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q LOSS MUTATED        3      5     16      8     11      2
  21Q LOSS WILD-TYPE     21     23     23     60     26     20
D79V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                5                 23
  CLUS_3               16                 23
  CLUS_4                8                 60
  CLUS_5               11                 26
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       28     10     11
  21Q LOSS WILD-TYPE     86     67     52
D79V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               28                 86
  CLUS_2               10                 67
  CLUS_3               11                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED       11      3      7      7      9      3      9
  21Q LOSS WILD-TYPE     35     20     42     39     19     26     24
D79V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 35
  CLUS_2                3                 20
  CLUS_3                7                 42
  CLUS_4                7                 39
  CLUS_5                9                 19
  CLUS_6                3                 26
  CLUS_7                9                 24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       20     15     14
  21Q LOSS WILD-TYPE     87     35     83
D79V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               20                 87
  CLUS_2               15                 35
  CLUS_3               14                 83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       19     12     16      2
  21Q LOSS WILD-TYPE     60     40     84     21
D79V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               19                 60
  CLUS_2               12                 40
  CLUS_3               16                 84
  CLUS_4                2                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       17     11     13
  21Q LOSS WILD-TYPE     66     53     33
D79V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               17                 66
  CLUS_2               11                 53
  CLUS_3               13                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  21Q LOSS MUTATED        2      8      5      7      3      7      7      2
  21Q LOSS WILD-TYPE     22     24     32     17      8     15     14     20
D79V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                8                 24
  CLUS_3                5                 32
  CLUS_4                7                 17
  CLUS_5                3                  8
  CLUS_6                7                 15
  CLUS_7                7                 14
  CLUS_8                2                 20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       30      7     20      9
  22Q LOSS WILD-TYPE     40     79     54     17
D80V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               30                 40
  CLUS_2                7                 79
  CLUS_3               20                 54
  CLUS_4                9                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED       17      5     15     10     13      5      1
  22Q LOSS WILD-TYPE     31     41     46     24     34     10      4
D80V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               17                 31
  CLUS_2                5                 41
  CLUS_3               15                 46
  CLUS_4               10                 24
  CLUS_5               13                 34
  CLUS_6                5                 10
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       18     24     17
  22Q LOSS WILD-TYPE     40     76     43
D80V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               18                 40
  CLUS_2               24                 76
  CLUS_3               17                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q LOSS MUTATED       13      5      9     15      9      8
  22Q LOSS WILD-TYPE     11     23     30     53     28     14
D80V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               13                 11
  CLUS_2                5                 23
  CLUS_3                9                 30
  CLUS_4               15                 53
  CLUS_5                9                 28
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       24     20     21
  22Q LOSS WILD-TYPE     90     57     42
D80V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               24                 90
  CLUS_2               20                 57
  CLUS_3               21                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED       16      3      9     14      3     12      8
  22Q LOSS WILD-TYPE     30     20     40     32     25     17     25
D80V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               16                 30
  CLUS_2                3                 20
  CLUS_3                9                 40
  CLUS_4               14                 32
  CLUS_5                3                 25
  CLUS_6               12                 17
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       33      8     25
  22Q LOSS WILD-TYPE     74     42     72
D80V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               33                 74
  CLUS_2                8                 42
  CLUS_3               25                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       24      9     25      8
  22Q LOSS WILD-TYPE     55     43     75     15
D80V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               24                 55
  CLUS_2                9                 43
  CLUS_3               25                 75
  CLUS_4                8                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       27     20      7
  22Q LOSS WILD-TYPE     56     44     39
D80V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               27                 56
  CLUS_2               20                 44
  CLUS_3                7                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  22Q LOSS MUTATED        7      9     11      6      4      8      1      8
  22Q LOSS WILD-TYPE     17     23     26     18      7     14     20     14
D80V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                9                 23
  CLUS_3               11                 26
  CLUS_4                6                 18
  CLUS_5                4                  7
  CLUS_6                8                 14
  CLUS_7                1                 20
  CLUS_8                8                 14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = XP LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED       21     16     19      6
  XP LOSS WILD-TYPE     49     70     55     20
D81V1, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              21                49
  CLUS_2              16                70
  CLUS_3              19                55
  CLUS_4               6                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED       13      2     24      6     11      5      1
  XP LOSS WILD-TYPE     35     44     37     28     36     10      4
D81V2, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              13                35
  CLUS_2               2                44
  CLUS_3              24                37
  CLUS_4               6                28
  CLUS_5              11                36
  CLUS_6               5                10
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        9     18     25
  XP LOSS WILD-TYPE     49     82     35
D81V3, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               9                49
  CLUS_2              18                82
  CLUS_3              25                35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP LOSS MUTATED        5      3      9     24      8      3
  XP LOSS WILD-TYPE     19     25     30     44     29     19
D81V4, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               3                25
  CLUS_3               9                30
  CLUS_4              24                44
  CLUS_5               8                29
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       22     30      9
  XP LOSS WILD-TYPE     92     47     54
D81V5, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              22                92
  CLUS_2              30                47
  CLUS_3               9                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED       11      1     17      7      5     13      7
  XP LOSS WILD-TYPE     35     22     32     39     23     16     26
D81V6, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              11                35
  CLUS_2               1                22
  CLUS_3              17                32
  CLUS_4               7                39
  CLUS_5               5                23
  CLUS_6              13                16
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       22      7     32
  XP LOSS WILD-TYPE     85     43     65
D81V7, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              22                85
  CLUS_2               7                43
  CLUS_3              32                65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED       16      7     33      5
  XP LOSS WILD-TYPE     63     45     67     18
D81V8, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              16                63
  CLUS_2               7                45
  CLUS_3              33                67
  CLUS_4               5                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       18     16      7
  XP LOSS WILD-TYPE     65     48     39
D81V9, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              18                65
  CLUS_2              16                48
  CLUS_3               7                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XP LOSS MUTATED        8      5     13      1      2      4      3      5
  XP LOSS WILD-TYPE     16     27     24     23      9     18     18     17
D81V10, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               5                27
  CLUS_3              13                24
  CLUS_4               1                23
  CLUS_5               2                 9
  CLUS_6               4                18
  CLUS_7               3                18
  CLUS_8               5                17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       40     21     29     11
  XQ LOSS WILD-TYPE     30     65     45     15
D82V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              40                30
  CLUS_2              21                65
  CLUS_3              29                45
  CLUS_4              11                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED       23      6     39      9     17      6      1
  XQ LOSS WILD-TYPE     25     40     22     25     30      9      4
D82V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              23                25
  CLUS_2               6                40
  CLUS_3              39                22
  CLUS_4               9                25
  CLUS_5              17                30
  CLUS_6               6                 9
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       16     31     37
  XQ LOSS WILD-TYPE     42     69     23
D82V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              16                42
  CLUS_2              31                69
  CLUS_3              37                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ LOSS MUTATED        8      4     14     37     16      5
  XQ LOSS WILD-TYPE     16     24     25     31     21     17
D82V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               4                24
  CLUS_3              14                25
  CLUS_4              37                31
  CLUS_5              16                21
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       36     47     17
  XQ LOSS WILD-TYPE     78     30     46
D82V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              36                78
  CLUS_2              47                30
  CLUS_3              17                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED       20      4     30     14      4     16     12
  XQ LOSS WILD-TYPE     26     19     19     32     24     13     21
D82V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              20                26
  CLUS_2               4                19
  CLUS_3              30                19
  CLUS_4              14                32
  CLUS_5               4                24
  CLUS_6              16                13
  CLUS_7              12                21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       33     15     52
  XQ LOSS WILD-TYPE     74     35     45
D82V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              33                74
  CLUS_2              15                35
  CLUS_3              52                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       27     14     53      6
  XQ LOSS WILD-TYPE     52     38     47     17
D82V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              27                52
  CLUS_2              14                38
  CLUS_3              53                47
  CLUS_4               6                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       29     31     14
  XQ LOSS WILD-TYPE     54     33     32
D82V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              29                54
  CLUS_2              31                33
  CLUS_3              14                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XQ LOSS MUTATED       12     15     20      7      6      4      5      5
  XQ LOSS WILD-TYPE     12     17     17     17      5     18     16     17
D82V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12                12
  CLUS_2              15                17
  CLUS_3              20                17
  CLUS_4               7                17
  CLUS_5               6                 5
  CLUS_6               4                18
  CLUS_7               5                16
  CLUS_8               5                17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
