[1] "ofn"        "-oTSARC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SARC-TP/15111074/SARC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/15098582/transformed.cor.cli.txt"

nPatients in clinical file=260, in cluster file=256, common to both=256
[1]  66 256
[1] "AMP PEAK  1(1P32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           94                           162 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           94                           162 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          104                           152 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          104                           152 
[1] "AMP PEAK  3(1Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE 
                          102                           154 
  AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE 
                          102                           154 
[1] "AMP PEAK  4(2P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE 
                           64                           192 
  AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE 
                           64                           192 
[1] "AMP PEAK  5(3P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE 
                           69                           187 
  AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE 
                           69                           187 
[1] "AMP PEAK  6(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                         78                         178 
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                         78                         178 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           119                            137 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           119                            137 
[1] "AMP PEAK  8(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                           60                           196 
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                           60                           196 
[1] "AMP PEAK  9(6Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE 
                           75                           181 
  AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE 
                           75                           181 
[1] "AMP PEAK 10(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE 
                           77                           179 
  AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE 
                           77                           179 
[1] "AMP PEAK 11(8P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE 
                            81                            175 
  AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE 
                            81                            175 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            83                            173 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            83                            173 
[1] "AMP PEAK 13(11Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE 
                            36                            220 
  AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE 
                            36                            220 
[1] "AMP PEAK 14(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE 
                          94                          162 
  AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE 
                          94                          162 
[1] "AMP PEAK 15(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          54                          202 
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          54                          202 
[1] "AMP PEAK 16(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            84                            172 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            84                            172 
[1] "AMP PEAK 17(17P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE 
                         102                          154 
  AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE 
                         102                          154 
[1] "AMP PEAK 18(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE 
                           104                            152 
  AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE 
                           104                            152 
[1] "AMP PEAK 19(17Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE 
                            79                            177 
  AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE 
                            79                            177 
[1] "AMP PEAK 20(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           107                            149 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           107                            149 
[1] "AMP PEAK 21(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                          93                          163 
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                          93                          163 
[1] "AMP PEAK 22(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE 
                             98                             158 
  AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE 
                             98                             158 
[1] "AMP PEAK 23(21Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE 
                            73                            183 
  AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE 
                            73                            183 
[1] "AMP PEAK 24(XP21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE 
                           97                           159 
  AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE 
                           97                           159 
[1] "AMP PEAK 25(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           46                           210 
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           46                           210 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            69                            187 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            69                            187 
[1] "DEL PEAK  2(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         80                         176 
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         80                         176 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           94                           162 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           94                           162 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          108                           148 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          108                           148 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          110                           146 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          110                           146 
[1] "DEL PEAK  6(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            65                            191 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            65                            191 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            51                            205 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            51                            205 
[1] "DEL PEAK  8(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         54                         202 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         54                         202 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           94                           162 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           94                           162 
[1] "DEL PEAK 10(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                            33                            223 
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                            33                            223 
[1] "DEL PEAK 11(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           81                           175 
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           81                           175 
[1] "DEL PEAK 12(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE 
                           78                           178 
  DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE 
                           78                           178 
[1] "DEL PEAK 13(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           71                           185 
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           71                           185 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           81                           175 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           81                           175 
[1] "DEL PEAK 15(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE 
                          100                           156 
  DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE 
                          100                           156 
[1] "DEL PEAK 16(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          114                           142 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          114                           142 
[1] "DEL PEAK 17(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE 
                           61                           195 
  DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE 
                           61                           195 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           128                            128 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           128                            128 
[1] "DEL PEAK 19(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            138                             118 
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            138                             118 
[1] "DEL PEAK 20(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                           132                            124 
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                           132                            124 
[1] "DEL PEAK 21(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           110                            146 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           110                            146 
[1] "DEL PEAK 22(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE 
                           123                            133 
  DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE 
                           123                            133 
[1] "DEL PEAK 23(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE 
                            87                            169 
  DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE 
                            87                            169 
[1] "DEL PEAK 24(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE 
                          56                          200 
  DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE 
                          56                          200 
[1] "DEL PEAK 25(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE 
                             69                             187 
  DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE 
                             69                             187 
[1] "DEL PEAK 26(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                           180                             76 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                           180                             76 
[1] "DEL PEAK 27(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE 
                            80                            176 
  DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE 
                            80                            176 
[1] "DEL PEAK 28(16Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE 
                           130                            126 
  DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE 
                           130                            126 
[1] "DEL PEAK 29(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                           134                            122 
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                           134                            122 
[1] "DEL PEAK 30(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE 
                           129                            127 
  DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE 
                           129                            127 
[1] "DEL PEAK 31(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE 
                            81                            175 
  DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE 
                            81                            175 
[1] "DEL PEAK 32(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE 
                            67                            189 
  DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE 
                            67                            189 
[1] "DEL PEAK 33(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE 
                          86                          170 
  DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE 
                          86                          170 
[1] "DEL PEAK 34(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE 
                            70                            186 
  DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE 
                            70                            186 
[1] "DEL PEAK 35(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE 
                            106                             150 
  DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE 
                            106                             150 
[1] "DEL PEAK 36(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE 
                            51                            205 
  DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE 
                            51                            205 
[1] "DEL PEAK 37(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE 
                            66                            190 
  DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE 
                            66                            190 
[1] "DEL PEAK 38(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE 
                             83                             173 
  DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE 
                             83                             173 
[1] "DEL PEAK 39(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE 
                           55                           201 
  DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE 
                           55                           201 
[1] "DEL PEAK 40(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE 
                          114                           142 
  DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE 
                          114                           142 
[1] "DEL PEAK 41(XQ22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE 
                          123                           133 
  DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE 
                          123                           133 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 256 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 256 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       36     14     31     13
  AMP PEAK  1(1P32.1) WILD-TYPE     34     72     43     13
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          36                            34
  CLUS_2                          14                            72
  CLUS_3                          31                            43
  CLUS_4                          13                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       18     16     14      3     39      1
  AMP PEAK  1(1P32.1) WILD-TYPE     30     30     47     31      8     14
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P32.1) MUTATED        3
  AMP PEAK  1(1P32.1) WILD-TYPE      2
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          18                            30
  CLUS_2                          16                            30
  CLUS_3                          14                            47
  CLUS_4                           3                            31
  CLUS_5                          39                             8
  CLUS_6                           1                            14
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       19     54     15
  AMP PEAK  1(1P32.1) WILD-TYPE     39     46     45
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          19                            39
  CLUS_2                          54                            46
  CLUS_3                          15                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED        9      9     29     18     16      7
  AMP PEAK  1(1P32.1) WILD-TYPE     15     19     10     50     21     15
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                           9                            19
  CLUS_3                          29                            10
  CLUS_4                          18                            50
  CLUS_5                          16                            21
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       61     17     16
  AMP PEAK  1(1P32.1) WILD-TYPE     53     60     47
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          61                            53
  CLUS_2                          17                            60
  CLUS_3                          16                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       18      9     10      8     21      6
  AMP PEAK  1(1P32.1) WILD-TYPE     28     14     39     38      7     23
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P32.1) MUTATED       22
  AMP PEAK  1(1P32.1) WILD-TYPE     11
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          18                            28
  CLUS_2                           9                            14
  CLUS_3                          10                            39
  CLUS_4                           8                            38
  CLUS_5                          21                             7
  CLUS_6                           6                            23
  CLUS_7                          22                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       43     25     24
  AMP PEAK  1(1P32.1) WILD-TYPE     64     25     73
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          43                            64
  CLUS_2                          25                            25
  CLUS_3                          24                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       41     23     25      3
  AMP PEAK  1(1P32.1) WILD-TYPE     38     29     75     20
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          41                            38
  CLUS_2                          23                            29
  CLUS_3                          25                            75
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       32     22     24
  AMP PEAK  1(1P32.1) WILD-TYPE     51     42     22
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          32                            51
  CLUS_2                          22                            42
  CLUS_3                          24                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       10     12     11     11      2     17
  AMP PEAK  1(1P32.1) WILD-TYPE     14     20     26     13      9      5
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  1(1P32.1) MUTATED       12      3
  AMP PEAK  1(1P32.1) WILD-TYPE      9     19
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          12                            20
  CLUS_3                          11                            26
  CLUS_4                          11                            13
  CLUS_5                           2                             9
  CLUS_6                          17                             5
  CLUS_7                          12                             9
  CLUS_8                           3                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       44     12     40      8
  AMP PEAK  2(1Q21.3) WILD-TYPE     26     74     34     18
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          44                            26
  CLUS_2                          12                            74
  CLUS_3                          40                            34
  CLUS_4                           8                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       21     11     25     11     30      3
  AMP PEAK  2(1Q21.3) WILD-TYPE     27     35     36     23     17     12
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED        3
  AMP PEAK  2(1Q21.3) WILD-TYPE      2
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          21                            27
  CLUS_2                          11                            35
  CLUS_3                          25                            36
  CLUS_4                          11                            23
  CLUS_5                          30                            17
  CLUS_6                           3                            12
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       21     48     23
  AMP PEAK  2(1Q21.3) WILD-TYPE     37     52     37
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          21                            37
  CLUS_2                          48                            52
  CLUS_3                          23                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       13      8     22     26     12     11
  AMP PEAK  2(1Q21.3) WILD-TYPE     11     20     17     42     25     11
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                           8                            20
  CLUS_3                          22                            17
  CLUS_4                          26                            42
  CLUS_5                          12                            25
  CLUS_6                          11                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       50     32     22
  AMP PEAK  2(1Q21.3) WILD-TYPE     64     45     41
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          50                            64
  CLUS_2                          32                            45
  CLUS_3                          22                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       19      8     14     15     13     17
  AMP PEAK  2(1Q21.3) WILD-TYPE     27     15     35     31     15     12
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED       18
  AMP PEAK  2(1Q21.3) WILD-TYPE     15
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          19                            27
  CLUS_2                           8                            15
  CLUS_3                          14                            35
  CLUS_4                          15                            31
  CLUS_5                          13                            15
  CLUS_6                          17                            12
  CLUS_7                          18                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       41     23     38
  AMP PEAK  2(1Q21.3) WILD-TYPE     66     27     59
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          41                            66
  CLUS_2                          23                            27
  CLUS_3                          38                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       37     21     39      5
  AMP PEAK  2(1Q21.3) WILD-TYPE     42     31     61     18
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          37                            42
  CLUS_2                          21                            31
  CLUS_3                          39                            61
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       30     33     24
  AMP PEAK  2(1Q21.3) WILD-TYPE     53     31     22
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          30                            53
  CLUS_2                          33                            31
  CLUS_3                          24                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       13     11     15     14      6     10
  AMP PEAK  2(1Q21.3) WILD-TYPE     11     21     22     10      5     12
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  2(1Q21.3) MUTATED       12      6
  AMP PEAK  2(1Q21.3) WILD-TYPE      9     16
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                          11                            21
  CLUS_3                          15                            22
  CLUS_4                          14                            10
  CLUS_5                           6                             5
  CLUS_6                          10                            12
  CLUS_7                          12                             9
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q24.3) MUTATED       43     15     31     13
  AMP PEAK  3(1Q24.3) WILD-TYPE     27     71     43     13
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          43                            27
  CLUS_2                          15                            71
  CLUS_3                          31                            43
  CLUS_4                          13                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       23     14     21      9     29      3
  AMP PEAK  3(1Q24.3) WILD-TYPE     25     32     40     25     18     12
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q24.3) MUTATED        3
  AMP PEAK  3(1Q24.3) WILD-TYPE      2
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          23                            25
  CLUS_2                          14                            32
  CLUS_3                          21                            40
  CLUS_4                           9                            25
  CLUS_5                          29                            18
  CLUS_6                           3                            12
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q24.3) MUTATED       24     44     21
  AMP PEAK  3(1Q24.3) WILD-TYPE     34     56     39
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          24                            34
  CLUS_2                          44                            56
  CLUS_3                          21                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       11     11     19     23     17      8
  AMP PEAK  3(1Q24.3) WILD-TYPE     13     17     20     45     20     14
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          11                            17
  CLUS_3                          19                            20
  CLUS_4                          23                            45
  CLUS_5                          17                            20
  CLUS_6                           8                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q24.3) MUTATED       57     28     17
  AMP PEAK  3(1Q24.3) WILD-TYPE     57     49     46
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          57                            57
  CLUS_2                          28                            49
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       23      9     15     14      8     12
  AMP PEAK  3(1Q24.3) WILD-TYPE     23     14     34     32     20     17
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q24.3) MUTATED       21
  AMP PEAK  3(1Q24.3) WILD-TYPE     12
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          23                            23
  CLUS_2                           9                            14
  CLUS_3                          15                            34
  CLUS_4                          14                            32
  CLUS_5                           8                            20
  CLUS_6                          12                            17
  CLUS_7                          21                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q24.3) MUTATED       43     21     36
  AMP PEAK  3(1Q24.3) WILD-TYPE     64     29     61
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          43                            64
  CLUS_2                          21                            29
  CLUS_3                          36                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q24.3) MUTATED       39     20     36      5
  AMP PEAK  3(1Q24.3) WILD-TYPE     40     32     64     18
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          39                            40
  CLUS_2                          20                            32
  CLUS_3                          36                            64
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q24.3) MUTATED       33     30     20
  AMP PEAK  3(1Q24.3) WILD-TYPE     50     34     26
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          33                            50
  CLUS_2                          30                            34
  CLUS_3                          20                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       11     14     14     14      4     11
  AMP PEAK  3(1Q24.3) WILD-TYPE     13     18     23     10      7     11
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  3(1Q24.3) MUTATED        9      6
  AMP PEAK  3(1Q24.3) WILD-TYPE     12     16
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          14                            18
  CLUS_3                          14                            23
  CLUS_4                          14                            10
  CLUS_5                           4                             7
  CLUS_6                          11                            11
  CLUS_7                           9                            12
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P11.2) MUTATED       21     10     25      8
  AMP PEAK  4(2P11.2) WILD-TYPE     49     76     49     18
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          21                            49
  CLUS_2                          10                            76
  CLUS_3                          25                            49
  CLUS_4                           8                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED       15      8     14      6     16      1
  AMP PEAK  4(2P11.2) WILD-TYPE     33     38     47     28     31     14
                               vv
clus                            CLUS_7
  AMP PEAK  4(2P11.2) MUTATED        4
  AMP PEAK  4(2P11.2) WILD-TYPE      1
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          15                            33
  CLUS_2                           8                            38
  CLUS_3                          14                            47
  CLUS_4                           6                            28
  CLUS_5                          16                            31
  CLUS_6                           1                            14
  CLUS_7                           4                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P11.2) MUTATED       16     27     13
  AMP PEAK  4(2P11.2) WILD-TYPE     42     73     47
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          16                            42
  CLUS_2                          27                            73
  CLUS_3                          13                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED        8      5     16     13     10      4
  AMP PEAK  4(2P11.2) WILD-TYPE     16     23     23     55     27     18
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                           5                            23
  CLUS_3                          16                            23
  CLUS_4                          13                            55
  CLUS_5                          10                            27
  CLUS_6                           4                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P11.2) MUTATED       31     18     15
  AMP PEAK  4(2P11.2) WILD-TYPE     83     59     48
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          31                            83
  CLUS_2                          18                            59
  CLUS_3                          15                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED       15      6     11     11     11      6
  AMP PEAK  4(2P11.2) WILD-TYPE     31     17     38     35     17     23
                               vv
clus                            CLUS_7
  AMP PEAK  4(2P11.2) MUTATED        4
  AMP PEAK  4(2P11.2) WILD-TYPE     29
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          15                            31
  CLUS_2                           6                            17
  CLUS_3                          11                            38
  CLUS_4                          11                            35
  CLUS_5                          11                            17
  CLUS_6                           6                            23
  CLUS_7                           4                            29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P11.2) MUTATED       29     12     22
  AMP PEAK  4(2P11.2) WILD-TYPE     78     38     75
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          29                            78
  CLUS_2                          12                            38
  CLUS_3                          22                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P11.2) MUTATED       22     15     23      3
  AMP PEAK  4(2P11.2) WILD-TYPE     57     37     77     20
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          22                            57
  CLUS_2                          15                            37
  CLUS_3                          23                            77
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P11.2) MUTATED       22     20     12
  AMP PEAK  4(2P11.2) WILD-TYPE     61     44     34
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          22                            61
  CLUS_2                          20                            44
  CLUS_3                          12                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED        7     10      9      7      3      6
  AMP PEAK  4(2P11.2) WILD-TYPE     17     22     28     17      8     16
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  4(2P11.2) MUTATED        6      6
  AMP PEAK  4(2P11.2) WILD-TYPE     15     16
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          10                            22
  CLUS_3                           9                            28
  CLUS_4                           7                            17
  CLUS_5                           3                             8
  CLUS_6                           6                            16
  CLUS_7                           6                            15
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.1) MUTATED       26      8     30      5
  AMP PEAK  5(3P12.1) WILD-TYPE     44     78     44     21
D5V1, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          26                            44
  CLUS_2                           8                            78
  CLUS_3                          30                            44
  CLUS_4                           5                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED       16     15     16      1     21      0
  AMP PEAK  5(3P12.1) WILD-TYPE     32     31     45     33     26     15
                               vv
clus                            CLUS_7
  AMP PEAK  5(3P12.1) MUTATED        0
  AMP PEAK  5(3P12.1) WILD-TYPE      5
D5V2, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          16                            32
  CLUS_2                          15                            31
  CLUS_3                          16                            45
  CLUS_4                           1                            33
  CLUS_5                          21                            26
  CLUS_6                           0                            15
  CLUS_7                           0                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.1) MUTATED       12     38      9
  AMP PEAK  5(3P12.1) WILD-TYPE     46     62     51
D5V3, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          12                            46
  CLUS_2                          38                            62
  CLUS_3                           9                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED        5      5     21     10     17      1
  AMP PEAK  5(3P12.1) WILD-TYPE     19     23     18     58     20     21
D5V4, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           5                            23
  CLUS_3                          21                            18
  CLUS_4                          10                            58
  CLUS_5                          17                            20
  CLUS_6                           1                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.1) MUTATED       44     17      7
  AMP PEAK  5(3P12.1) WILD-TYPE     70     60     56
D5V5, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          44                            70
  CLUS_2                          17                            60
  CLUS_3                           7                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED       17      8     12      2     15      4
  AMP PEAK  5(3P12.1) WILD-TYPE     29     15     37     44     13     25
                               vv
clus                            CLUS_7
  AMP PEAK  5(3P12.1) MUTATED       10
  AMP PEAK  5(3P12.1) WILD-TYPE     23
D5V6, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          17                            29
  CLUS_2                           8                            15
  CLUS_3                          12                            37
  CLUS_4                           2                            44
  CLUS_5                          15                            13
  CLUS_6                           4                            25
  CLUS_7                          10                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.1) MUTATED       27     18     24
  AMP PEAK  5(3P12.1) WILD-TYPE     80     32     73
D5V7, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          27                            80
  CLUS_2                          18                            32
  CLUS_3                          24                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.1) MUTATED       30     14     25      0
  AMP PEAK  5(3P12.1) WILD-TYPE     49     38     75     23
D5V8, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          30                            49
  CLUS_2                          14                            38
  CLUS_3                          25                            75
  CLUS_4                           0                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.1) MUTATED       19     17     24
  AMP PEAK  5(3P12.1) WILD-TYPE     64     47     22
D5V9, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          19                            64
  CLUS_2                          17                            47
  CLUS_3                          24                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED        7      9     11     11      2     10
  AMP PEAK  5(3P12.1) WILD-TYPE     17     23     26     13      9     12
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  5(3P12.1) MUTATED       10      0
  AMP PEAK  5(3P12.1) WILD-TYPE     11     22
D5V10, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                           9                            23
  CLUS_3                          11                            26
  CLUS_4                          11                            13
  CLUS_5                           2                             9
  CLUS_6                          10                            12
  CLUS_7                          10                            11
  CLUS_8                           0                            22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED       34     10     27      7
  AMP PEAK  6(4Q12) WILD-TYPE     36     76     47     19
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        34                          36
  CLUS_2                        10                          76
  CLUS_3                        27                          47
  CLUS_4                         7                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(4Q12) MUTATED       17     16     12      5     25      0      3
  AMP PEAK  6(4Q12) WILD-TYPE     31     30     49     29     22     15      2
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        17                          31
  CLUS_2                        16                          30
  CLUS_3                        12                          49
  CLUS_4                         5                          29
  CLUS_5                        25                          22
  CLUS_6                         0                          15
  CLUS_7                         3                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       21     39      9
  AMP PEAK  6(4Q12) WILD-TYPE     37     61     51
D6V3, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        21                          37
  CLUS_2                        39                          61
  CLUS_3                         9                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q12) MUTATED       11     10     18     13     14      3
  AMP PEAK  6(4Q12) WILD-TYPE     13     18     21     55     23     19
D6V4, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        11                          13
  CLUS_2                        10                          18
  CLUS_3                        18                          21
  CLUS_4                        13                          55
  CLUS_5                        14                          23
  CLUS_6                         3                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       50     14     14
  AMP PEAK  6(4Q12) WILD-TYPE     64     63     49
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        50                          64
  CLUS_2                        14                          63
  CLUS_3                        14                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(4Q12) MUTATED       18      9      7      9     13      7     15
  AMP PEAK  6(4Q12) WILD-TYPE     28     14     42     37     15     22     18
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        18                          28
  CLUS_2                         9                          14
  CLUS_3                         7                          42
  CLUS_4                         9                          37
  CLUS_5                        13                          15
  CLUS_6                         7                          22
  CLUS_7                        15                          18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       29     23     25
  AMP PEAK  6(4Q12) WILD-TYPE     78     27     72
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        29                          78
  CLUS_2                        23                          27
  CLUS_3                        25                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED       27     23     26      1
  AMP PEAK  6(4Q12) WILD-TYPE     52     29     74     22
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        27                          52
  CLUS_2                        23                          29
  CLUS_3                        26                          74
  CLUS_4                         1                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       22     22     23
  AMP PEAK  6(4Q12) WILD-TYPE     61     42     23
D6V9, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        22                          61
  CLUS_2                        22                          42
  CLUS_3                        23                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(4Q12) MUTATED        9      9      7     14      4     12      9
  AMP PEAK  6(4Q12) WILD-TYPE     15     23     30     10      7     10     12
                             vv
clus                          CLUS_8
  AMP PEAK  6(4Q12) MUTATED        3
  AMP PEAK  6(4Q12) WILD-TYPE     19
D6V10, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         9                          15
  CLUS_2                         9                          23
  CLUS_3                         7                          30
  CLUS_4                        14                          10
  CLUS_5                         4                           7
  CLUS_6                        12                          10
  CLUS_7                         9                          12
  CLUS_8                         3                          19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       29     13     63     14
  AMP PEAK  7(5P15.33) WILD-TYPE     41     73     11     12
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           29                             41
  CLUS_2                           13                             73
  CLUS_3                           63                             11
  CLUS_4                           14                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       29     23     27     10     26      1
  AMP PEAK  7(5P15.33) WILD-TYPE     19     23     34     24     21     14
                                vv
clus                             CLUS_7
  AMP PEAK  7(5P15.33) MUTATED        3
  AMP PEAK  7(5P15.33) WILD-TYPE      2
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           29                             19
  CLUS_2                           23                             23
  CLUS_3                           27                             34
  CLUS_4                           10                             24
  CLUS_5                           26                             21
  CLUS_6                            1                             14
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       24     58     21
  AMP PEAK  7(5P15.33) WILD-TYPE     34     42     39
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           24                             34
  CLUS_2                           58                             42
  CLUS_3                           21                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       11      9     27     24     21     11
  AMP PEAK  7(5P15.33) WILD-TYPE     13     19     12     44     16     11
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                            9                             19
  CLUS_3                           27                             12
  CLUS_4                           24                             44
  CLUS_5                           21                             16
  CLUS_6                           11                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       65     30     23
  AMP PEAK  7(5P15.33) WILD-TYPE     49     47     40
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           65                             49
  CLUS_2                           30                             47
  CLUS_3                           23                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       32      9     23     16     17      6
  AMP PEAK  7(5P15.33) WILD-TYPE     14     14     26     30     11     23
                                vv
clus                             CLUS_7
  AMP PEAK  7(5P15.33) MUTATED       15
  AMP PEAK  7(5P15.33) WILD-TYPE     18
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           32                             14
  CLUS_2                            9                             14
  CLUS_3                           23                             26
  CLUS_4                           16                             30
  CLUS_5                           17                             11
  CLUS_6                            6                             23
  CLUS_7                           15                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       51     27     40
  AMP PEAK  7(5P15.33) WILD-TYPE     56     23     57
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           51                             56
  CLUS_2                           27                             23
  CLUS_3                           40                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       45     24     42      7
  AMP PEAK  7(5P15.33) WILD-TYPE     34     28     58     16
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           45                             34
  CLUS_2                           24                             28
  CLUS_3                           42                             58
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       40     29     24
  AMP PEAK  7(5P15.33) WILD-TYPE     43     35     22
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           40                             43
  CLUS_2                           29                             35
  CLUS_3                           24                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       11     18     18     13      3     10
  AMP PEAK  7(5P15.33) WILD-TYPE     13     14     19     11      8     12
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  7(5P15.33) MUTATED       10     10
  AMP PEAK  7(5P15.33) WILD-TYPE     11     12
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                           18                             14
  CLUS_3                           18                             19
  CLUS_4                           13                             11
  CLUS_5                            3                              8
  CLUS_6                           10                             12
  CLUS_7                           10                             11
  CLUS_8                           10                             12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       27      3     20     10
  AMP PEAK  8(6P21.1) WILD-TYPE     43     83     54     16
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          27                            43
  CLUS_2                           3                            83
  CLUS_3                          20                            54
  CLUS_4                          10                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       21      7      5      5     19      0
  AMP PEAK  8(6P21.1) WILD-TYPE     27     39     56     29     28     15
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P21.1) MUTATED        3
  AMP PEAK  8(6P21.1) WILD-TYPE      2
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          21                            27
  CLUS_2                           7                            39
  CLUS_3                           5                            56
  CLUS_4                           5                            29
  CLUS_5                          19                            28
  CLUS_6                           0                            15
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       17     33      5
  AMP PEAK  8(6P21.1) WILD-TYPE     41     67     55
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          17                            41
  CLUS_2                          33                            67
  CLUS_3                           5                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       12      4     15      7     10      7
  AMP PEAK  8(6P21.1) WILD-TYPE     12     24     24     61     27     15
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                           4                            24
  CLUS_3                          15                            24
  CLUS_4                           7                            61
  CLUS_5                          10                            27
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       39      7     14
  AMP PEAK  8(6P21.1) WILD-TYPE     75     70     49
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          39                            75
  CLUS_2                           7                            70
  CLUS_3                          14                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       20      4      3      9      8      4
  AMP PEAK  8(6P21.1) WILD-TYPE     26     19     46     37     20     25
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P21.1) MUTATED       12
  AMP PEAK  8(6P21.1) WILD-TYPE     21
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          20                            26
  CLUS_2                           4                            19
  CLUS_3                           3                            46
  CLUS_4                           9                            37
  CLUS_5                           8                            20
  CLUS_6                           4                            25
  CLUS_7                          12                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       31     15     13
  AMP PEAK  8(6P21.1) WILD-TYPE     76     35     84
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          31                            76
  CLUS_2                          15                            35
  CLUS_3                          13                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       28     16     12      3
  AMP PEAK  8(6P21.1) WILD-TYPE     51     36     88     20
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          28                            51
  CLUS_2                          16                            36
  CLUS_3                          12                            88
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       23     12     14
  AMP PEAK  8(6P21.1) WILD-TYPE     60     52     32
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          23                            60
  CLUS_2                          12                            52
  CLUS_3                          14                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED        9     10      4     10      1      9
  AMP PEAK  8(6P21.1) WILD-TYPE     15     22     33     14     10     13
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  8(6P21.1) MUTATED        3      3
  AMP PEAK  8(6P21.1) WILD-TYPE     18     19
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                          10                            22
  CLUS_3                           4                            33
  CLUS_4                          10                            14
  CLUS_5                           1                            10
  CLUS_6                           9                            13
  CLUS_7                           3                            18
  CLUS_8                           3                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q25.1) MUTATED       25     15     22     13
  AMP PEAK  9(6Q25.1) WILD-TYPE     45     71     52     13
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          25                            45
  CLUS_2                          15                            71
  CLUS_3                          22                            52
  CLUS_4                          13                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       29     17      7      3     16      2
  AMP PEAK  9(6Q25.1) WILD-TYPE     19     29     54     31     31     13
                               vv
clus                            CLUS_7
  AMP PEAK  9(6Q25.1) MUTATED        1
  AMP PEAK  9(6Q25.1) WILD-TYPE      4
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          29                            19
  CLUS_2                          17                            29
  CLUS_3                           7                            54
  CLUS_4                           3                            31
  CLUS_5                          16                            31
  CLUS_6                           2                            13
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q25.1) MUTATED       24     37      6
  AMP PEAK  9(6Q25.1) WILD-TYPE     34     63     54
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          24                            34
  CLUS_2                          37                            63
  CLUS_3                           6                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       13     12     12      8     15      7
  AMP PEAK  9(6Q25.1) WILD-TYPE     11     16     27     60     22     15
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                          12                            16
  CLUS_3                          12                            27
  CLUS_4                           8                            60
  CLUS_5                          15                            22
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q25.1) MUTATED       55      8     11
  AMP PEAK  9(6Q25.1) WILD-TYPE     59     69     52
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          55                            59
  CLUS_2                           8                            69
  CLUS_3                          11                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       25     14      5     10      7      3
  AMP PEAK  9(6Q25.1) WILD-TYPE     21      9     44     36     21     26
                               vv
clus                            CLUS_7
  AMP PEAK  9(6Q25.1) MUTATED       10
  AMP PEAK  9(6Q25.1) WILD-TYPE     23
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          25                            21
  CLUS_2                          14                             9
  CLUS_3                           5                            44
  CLUS_4                          10                            36
  CLUS_5                           7                            21
  CLUS_6                           3                            26
  CLUS_7                          10                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q25.1) MUTATED       41     18     16
  AMP PEAK  9(6Q25.1) WILD-TYPE     66     32     81
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          41                            66
  CLUS_2                          18                            32
  CLUS_3                          16                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q25.1) MUTATED       36     19     17      3
  AMP PEAK  9(6Q25.1) WILD-TYPE     43     33     83     20
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          36                            43
  CLUS_2                          19                            33
  CLUS_3                          17                            83
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q25.1) MUTATED       28     13     24
  AMP PEAK  9(6Q25.1) WILD-TYPE     55     51     22
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          28                            55
  CLUS_2                          13                            51
  CLUS_3                          24                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       10     17      6     10      2      8
  AMP PEAK  9(6Q25.1) WILD-TYPE     14     15     31     14      9     14
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  9(6Q25.1) MUTATED        9      3
  AMP PEAK  9(6Q25.1) WILD-TYPE     12     19
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          17                            15
  CLUS_3                           6                            31
  CLUS_4                          10                            14
  CLUS_5                           2                             9
  CLUS_6                           8                            14
  CLUS_7                           9                            12
  CLUS_8                           3                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       22     10     37      8
  AMP PEAK 10(7Q31.2) WILD-TYPE     48     76     37     18
D10V1, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          10                            76
  CLUS_3                          37                            37
  CLUS_4                           8                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       25     15      8      6     19      1
  AMP PEAK 10(7Q31.2) WILD-TYPE     23     31     53     28     28     14
                               vv
clus                            CLUS_7
  AMP PEAK 10(7Q31.2) MUTATED        3
  AMP PEAK 10(7Q31.2) WILD-TYPE      2
D10V2, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          25                            23
  CLUS_2                          15                            31
  CLUS_3                           8                            53
  CLUS_4                           6                            28
  CLUS_5                          19                            28
  CLUS_6                           1                            14
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       19     42     10
  AMP PEAK 10(7Q31.2) WILD-TYPE     39     58     50
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          19                            39
  CLUS_2                          42                            58
  CLUS_3                          10                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       11     15     17     10     14      4
  AMP PEAK 10(7Q31.2) WILD-TYPE     13     13     22     58     23     18
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          15                            13
  CLUS_3                          17                            22
  CLUS_4                          10                            58
  CLUS_5                          14                            23
  CLUS_6                           4                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       50     10     17
  AMP PEAK 10(7Q31.2) WILD-TYPE     64     67     46
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          50                            64
  CLUS_2                          10                            67
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       21      8      6     13     11      5
  AMP PEAK 10(7Q31.2) WILD-TYPE     25     15     43     33     17     24
                               vv
clus                            CLUS_7
  AMP PEAK 10(7Q31.2) MUTATED       13
  AMP PEAK 10(7Q31.2) WILD-TYPE     20
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          21                            25
  CLUS_2                           8                            15
  CLUS_3                           6                            43
  CLUS_4                          13                            33
  CLUS_5                          11                            17
  CLUS_6                           5                            24
  CLUS_7                          13                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       33     25     19
  AMP PEAK 10(7Q31.2) WILD-TYPE     74     25     78
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          33                            74
  CLUS_2                          25                            25
  CLUS_3                          19                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       28     28     17      4
  AMP PEAK 10(7Q31.2) WILD-TYPE     51     24     83     19
D10V8, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          28                            51
  CLUS_2                          28                            24
  CLUS_3                          17                            83
  CLUS_4                           4                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       24     11     26
  AMP PEAK 10(7Q31.2) WILD-TYPE     59     53     20
D10V9, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          24                            59
  CLUS_2                          11                            53
  CLUS_3                          26                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       11     12      4     13      1      3
  AMP PEAK 10(7Q31.2) WILD-TYPE     13     20     33     11     10     19
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 10(7Q31.2) MUTATED       12      5
  AMP PEAK 10(7Q31.2) WILD-TYPE      9     17
D10V10, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          12                            20
  CLUS_3                           4                            33
  CLUS_4                          13                            11
  CLUS_5                           1                            10
  CLUS_6                           3                            19
  CLUS_7                          12                             9
  CLUS_8                           5                            17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.22) MUTATED       29     12     34      6
  AMP PEAK 11(8P11.22) WILD-TYPE     41     74     40     20
D11V1, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           29                             41
  CLUS_2                           12                             74
  CLUS_3                           34                             40
  CLUS_4                            6                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED       18     15     18      5     22      1
  AMP PEAK 11(8P11.22) WILD-TYPE     30     31     43     29     25     14
                                vv
clus                             CLUS_7
  AMP PEAK 11(8P11.22) MUTATED        2
  AMP PEAK 11(8P11.22) WILD-TYPE      3
D11V2, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           18                             30
  CLUS_2                           15                             31
  CLUS_3                           18                             43
  CLUS_4                            5                             29
  CLUS_5                           22                             25
  CLUS_6                            1                             14
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.22) MUTATED       18     39     15
  AMP PEAK 11(8P11.22) WILD-TYPE     40     61     45
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           18                             40
  CLUS_2                           39                             61
  CLUS_3                           15                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED        9      9     19     18     13      4
  AMP PEAK 11(8P11.22) WILD-TYPE     15     19     20     50     24     18
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            9                             19
  CLUS_3                           19                             20
  CLUS_4                           18                             50
  CLUS_5                           13                             24
  CLUS_6                            4                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.22) MUTATED       42     21     18
  AMP PEAK 11(8P11.22) WILD-TYPE     72     56     45
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           42                             72
  CLUS_2                           21                             56
  CLUS_3                           18                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED       18      6     13      9     16      7
  AMP PEAK 11(8P11.22) WILD-TYPE     28     17     36     37     12     22
                                vv
clus                             CLUS_7
  AMP PEAK 11(8P11.22) MUTATED       12
  AMP PEAK 11(8P11.22) WILD-TYPE     21
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           18                             28
  CLUS_2                            6                             17
  CLUS_3                           13                             36
  CLUS_4                            9                             37
  CLUS_5                           16                             12
  CLUS_6                            7                             22
  CLUS_7                           12                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.22) MUTATED       30     20     30
  AMP PEAK 11(8P11.22) WILD-TYPE     77     30     67
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           30                             77
  CLUS_2                           20                             30
  CLUS_3                           30                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.22) MUTATED       30     16     32      2
  AMP PEAK 11(8P11.22) WILD-TYPE     49     36     68     21
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           30                             49
  CLUS_2                           16                             36
  CLUS_3                           32                             68
  CLUS_4                            2                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.22) MUTATED       26     22     19
  AMP PEAK 11(8P11.22) WILD-TYPE     57     42     27
D11V9, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           26                             57
  CLUS_2                           22                             42
  CLUS_3                           19                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED        7     12     10     14      4      9
  AMP PEAK 11(8P11.22) WILD-TYPE     17     20     27     10      7     13
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 11(8P11.22) MUTATED        8      3
  AMP PEAK 11(8P11.22) WILD-TYPE     13     19
D11V10, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                           12                             20
  CLUS_3                           10                             27
  CLUS_4                           14                             10
  CLUS_5                            4                              7
  CLUS_6                            9                             13
  CLUS_7                            8                             13
  CLUS_8                            3                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       28     16     33      6
  AMP PEAK 12(8Q24.21) WILD-TYPE     42     70     41     20
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           28                             42
  CLUS_2                           16                             70
  CLUS_3                           33                             41
  CLUS_4                            6                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       14     11     19     11     23      2
  AMP PEAK 12(8Q24.21) WILD-TYPE     34     35     42     23     24     13
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED        3
  AMP PEAK 12(8Q24.21) WILD-TYPE      2
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           14                             34
  CLUS_2                           11                             35
  CLUS_3                           19                             42
  CLUS_4                           11                             23
  CLUS_5                           23                             24
  CLUS_6                            2                             13
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       16     43     13
  AMP PEAK 12(8Q24.21) WILD-TYPE     42     57     47
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           16                             42
  CLUS_2                           43                             57
  CLUS_3                           13                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED        7      5     19     16     15     10
  AMP PEAK 12(8Q24.21) WILD-TYPE     17     23     20     52     22     12
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            5                             23
  CLUS_3                           19                             20
  CLUS_4                           16                             52
  CLUS_5                           15                             22
  CLUS_6                           10                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       40     22     21
  AMP PEAK 12(8Q24.21) WILD-TYPE     74     55     42
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           40                             74
  CLUS_2                           22                             55
  CLUS_3                           21                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       11      7     15     16     14      6
  AMP PEAK 12(8Q24.21) WILD-TYPE     35     16     34     30     14     23
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED       14
  AMP PEAK 12(8Q24.21) WILD-TYPE     19
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           11                             35
  CLUS_2                            7                             16
  CLUS_3                           15                             34
  CLUS_4                           16                             30
  CLUS_5                           14                             14
  CLUS_6                            6                             23
  CLUS_7                           14                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       31     19     32
  AMP PEAK 12(8Q24.21) WILD-TYPE     76     31     65
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           31                             76
  CLUS_2                           19                             31
  CLUS_3                           32                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       26     16     34      6
  AMP PEAK 12(8Q24.21) WILD-TYPE     53     36     66     17
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           26                             53
  CLUS_2                           16                             36
  CLUS_3                           34                             66
  CLUS_4                            6                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       22     24     20
  AMP PEAK 12(8Q24.21) WILD-TYPE     61     40     26
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           22                             61
  CLUS_2                           24                             40
  CLUS_3                           20                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED        8      8     12     13      2      8
  AMP PEAK 12(8Q24.21) WILD-TYPE     16     24     25     11      9     14
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 12(8Q24.21) MUTATED        8      7
  AMP PEAK 12(8Q24.21) WILD-TYPE     13     15
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                            8                             24
  CLUS_3                           12                             25
  CLUS_4                           13                             11
  CLUS_5                            2                              9
  CLUS_6                            8                             14
  CLUS_7                            8                             13
  CLUS_8                            7                             15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q22.2) MUTATED       10      6     17      3
  AMP PEAK 13(11Q22.2) WILD-TYPE     60     80     57     23
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           10                             60
  CLUS_2                            6                             80
  CLUS_3                           17                             57
  CLUS_4                            3                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED        7      7      3      2     14      2
  AMP PEAK 13(11Q22.2) WILD-TYPE     41     39     58     32     33     13
                                vv
clus                             CLUS_7
  AMP PEAK 13(11Q22.2) MUTATED        1
  AMP PEAK 13(11Q22.2) WILD-TYPE      4
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                            7                             41
  CLUS_2                            7                             39
  CLUS_3                            3                             58
  CLUS_4                            2                             32
  CLUS_5                           14                             33
  CLUS_6                            2                             13
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q22.2) MUTATED       12     18      5
  AMP PEAK 13(11Q22.2) WILD-TYPE     46     82     55
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           12                             46
  CLUS_2                           18                             82
  CLUS_3                            5                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED        6      8      9      5      3      4
  AMP PEAK 13(11Q22.2) WILD-TYPE     18     20     30     63     34     18
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            8                             20
  CLUS_3                            9                             30
  CLUS_4                            5                             63
  CLUS_5                            3                             34
  CLUS_6                            4                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q22.2) MUTATED       22      4     10
  AMP PEAK 13(11Q22.2) WILD-TYPE     92     73     53
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           22                             92
  CLUS_2                            4                             73
  CLUS_3                           10                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED       10      3      2      5      9      2
  AMP PEAK 13(11Q22.2) WILD-TYPE     36     20     47     41     19     27
                                vv
clus                             CLUS_7
  AMP PEAK 13(11Q22.2) MUTATED        5
  AMP PEAK 13(11Q22.2) WILD-TYPE     28
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           10                             36
  CLUS_2                            3                             20
  CLUS_3                            2                             47
  CLUS_4                            5                             41
  CLUS_5                            9                             19
  CLUS_6                            2                             27
  CLUS_7                            5                             28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q22.2) MUTATED       19      8      9
  AMP PEAK 13(11Q22.2) WILD-TYPE     88     42     88
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           19                             88
  CLUS_2                            8                             42
  CLUS_3                            9                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q22.2) MUTATED       17      9      9      1
  AMP PEAK 13(11Q22.2) WILD-TYPE     62     43     91     22
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           17                             62
  CLUS_2                            9                             43
  CLUS_3                            9                             91
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q22.2) MUTATED       14      7      7
  AMP PEAK 13(11Q22.2) WILD-TYPE     69     57     39
D13V9, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           14                             69
  CLUS_2                            7                             57
  CLUS_3                            7                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED        1      8      3      4      1      3
  AMP PEAK 13(11Q22.2) WILD-TYPE     23     24     34     20     10     19
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 13(11Q22.2) MUTATED        7      1
  AMP PEAK 13(11Q22.2) WILD-TYPE     14     21
D13V10, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                            1                             23
  CLUS_2                            8                             24
  CLUS_3                            3                             34
  CLUS_4                            4                             20
  CLUS_5                            1                             10
  CLUS_6                            3                             19
  CLUS_7                            7                             14
  CLUS_8                            1                             21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q15) MUTATED        9     25     36     24
  AMP PEAK 14(12Q15) WILD-TYPE     61     61     38      2
D14V1, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                          9                           61
  CLUS_2                         25                           61
  CLUS_3                         36                           38
  CLUS_4                         24                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(12Q15) MUTATED       29     27      1     13     19      3      2
  AMP PEAK 14(12Q15) WILD-TYPE     19     19     60     21     28     12      3
D14V2, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         29                           19
  CLUS_2                         27                           19
  CLUS_3                          1                           60
  CLUS_4                         13                           21
  CLUS_5                         19                           28
  CLUS_6                          3                           12
  CLUS_7                          2                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q15) MUTATED       35     48      4
  AMP PEAK 14(12Q15) WILD-TYPE     23     52     56
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         35                           23
  CLUS_2                         48                           52
  CLUS_3                          4                           56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12Q15) MUTATED       13     20     19      7     21      7
  AMP PEAK 14(12Q15) WILD-TYPE     11      8     20     61     16     15
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         13                           11
  CLUS_2                         20                            8
  CLUS_3                         19                           20
  CLUS_4                          7                           61
  CLUS_5                         21                           16
  CLUS_6                          7                           15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q15) MUTATED       59      2     33
  AMP PEAK 14(12Q15) WILD-TYPE     55     75     30
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         59                           55
  CLUS_2                          2                           75
  CLUS_3                         33                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(12Q15) MUTATED       29     14      1     25     13      1     11
  AMP PEAK 14(12Q15) WILD-TYPE     17      9     48     21     15     28     22
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         29                           17
  CLUS_2                         14                            9
  CLUS_3                          1                           48
  CLUS_4                         25                           21
  CLUS_5                         13                           15
  CLUS_6                          1                           28
  CLUS_7                         11                           22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q15) MUTATED       58     24     10
  AMP PEAK 14(12Q15) WILD-TYPE     49     26     87
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         58                           49
  CLUS_2                         24                           26
  CLUS_3                         10                           87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q15) MUTATED       49     26     10      7
  AMP PEAK 14(12Q15) WILD-TYPE     30     26     90     16
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         49                           30
  CLUS_2                         26                           26
  CLUS_3                         10                           90
  CLUS_4                          7                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q15) MUTATED       47      7     21
  AMP PEAK 14(12Q15) WILD-TYPE     36     57     25
D14V9, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         47                           36
  CLUS_2                          7                           57
  CLUS_3                         21                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(12Q15) MUTATED        8     27      0     10      1     10     10
  AMP PEAK 14(12Q15) WILD-TYPE     16      5     37     14     10     12     11
                              vv
clus                           CLUS_8
  AMP PEAK 14(12Q15) MUTATED        9
  AMP PEAK 14(12Q15) WILD-TYPE     13
D14V10, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                          8                           16
  CLUS_2                         27                            5
  CLUS_3                          0                           37
  CLUS_4                         10                           14
  CLUS_5                          1                           10
  CLUS_6                         10                           12
  CLUS_7                         10                           11
  CLUS_8                          9                           13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       38      9      4      3
  AMP PEAK 15(13Q34) WILD-TYPE     32     77     70     23
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         38                           32
  CLUS_2                          9                           77
  CLUS_3                          4                           70
  CLUS_4                          3                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED       15      6     13      3     15      0      2
  AMP PEAK 15(13Q34) WILD-TYPE     33     40     48     31     32     15      3
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         15                           33
  CLUS_2                          6                           40
  CLUS_3                         13                           48
  CLUS_4                          3                           31
  CLUS_5                         15                           32
  CLUS_6                          0                           15
  CLUS_7                          2                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       14     24     12
  AMP PEAK 15(13Q34) WILD-TYPE     44     76     48
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         14                           44
  CLUS_2                         24                           76
  CLUS_3                         12                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q34) MUTATED       10      3     10     14     12      1
  AMP PEAK 15(13Q34) WILD-TYPE     14     25     29     54     25     21
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         10                           14
  CLUS_2                          3                           25
  CLUS_3                         10                           29
  CLUS_4                         14                           54
  CLUS_5                         12                           25
  CLUS_6                          1                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       27     16     10
  AMP PEAK 15(13Q34) WILD-TYPE     87     61     53
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         27                           87
  CLUS_2                         16                           61
  CLUS_3                         10                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED       13      1     10      6      5      6     12
  AMP PEAK 15(13Q34) WILD-TYPE     33     22     39     40     23     23     21
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         13                           33
  CLUS_2                          1                           22
  CLUS_3                         10                           39
  CLUS_4                          6                           40
  CLUS_5                          5                           23
  CLUS_6                          6                           23
  CLUS_7                         12                           21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       24     12     17
  AMP PEAK 15(13Q34) WILD-TYPE     83     38     80
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         24                           83
  CLUS_2                         12                           38
  CLUS_3                         17                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       22     11     19      1
  AMP PEAK 15(13Q34) WILD-TYPE     57     41     81     22
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         22                           57
  CLUS_2                         11                           41
  CLUS_3                         19                           81
  CLUS_4                          1                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       18     17     11
  AMP PEAK 15(13Q34) WILD-TYPE     65     47     35
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         18                           65
  CLUS_2                         17                           47
  CLUS_3                         11                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED       11      5      8      6      4      9      2
  AMP PEAK 15(13Q34) WILD-TYPE     13     27     29     18      7     13     19
                              vv
clus                           CLUS_8
  AMP PEAK 15(13Q34) MUTATED        1
  AMP PEAK 15(13Q34) WILD-TYPE     21
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         11                           13
  CLUS_2                          5                           27
  CLUS_3                          8                           29
  CLUS_4                          6                           18
  CLUS_5                          4                            7
  CLUS_6                          9                           13
  CLUS_7                          2                           19
  CLUS_8                          1                           21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       25      8     41     10
  AMP PEAK 16(15Q26.3) WILD-TYPE     45     78     33     16
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           25                             45
  CLUS_2                            8                             78
  CLUS_3                           41                             33
  CLUS_4                           10                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED       19     11     23     10     18      1
  AMP PEAK 16(15Q26.3) WILD-TYPE     29     35     38     24     29     14
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.3) MUTATED        2
  AMP PEAK 16(15Q26.3) WILD-TYPE      3
D16V2, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           19                             29
  CLUS_2                           11                             35
  CLUS_3                           23                             38
  CLUS_4                           10                             24
  CLUS_5                           18                             29
  CLUS_6                            1                             14
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       20     33     17
  AMP PEAK 16(15Q26.3) WILD-TYPE     38     67     43
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           20                             38
  CLUS_2                           33                             67
  CLUS_3                           17                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED       10      8     17     19     10      6
  AMP PEAK 16(15Q26.3) WILD-TYPE     14     20     22     49     27     16
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            8                             20
  CLUS_3                           17                             22
  CLUS_4                           19                             49
  CLUS_5                           10                             27
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       40     26     18
  AMP PEAK 16(15Q26.3) WILD-TYPE     74     51     45
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           40                             74
  CLUS_2                           26                             51
  CLUS_3                           18                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED       21      5     20     14     11      6
  AMP PEAK 16(15Q26.3) WILD-TYPE     25     18     29     32     17     23
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.3) MUTATED        7
  AMP PEAK 16(15Q26.3) WILD-TYPE     26
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           21                             25
  CLUS_2                            5                             18
  CLUS_3                           20                             29
  CLUS_4                           14                             32
  CLUS_5                           11                             17
  CLUS_6                            6                             23
  CLUS_7                            7                             26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       35     17     32
  AMP PEAK 16(15Q26.3) WILD-TYPE     72     33     65
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           35                             72
  CLUS_2                           17                             33
  CLUS_3                           32                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       32     16     30      6
  AMP PEAK 16(15Q26.3) WILD-TYPE     47     36     70     17
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           16                             36
  CLUS_3                           30                             70
  CLUS_4                            6                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       30     24     18
  AMP PEAK 16(15Q26.3) WILD-TYPE     53     40     28
D16V9, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           30                             53
  CLUS_2                           24                             40
  CLUS_3                           18                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED        6     15     15      8      3      8
  AMP PEAK 16(15Q26.3) WILD-TYPE     18     17     22     16      8     14
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 16(15Q26.3) MUTATED       10      7
  AMP PEAK 16(15Q26.3) WILD-TYPE     11     15
D16V10, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                           15                             17
  CLUS_3                           15                             22
  CLUS_4                            8                             16
  CLUS_5                            3                              8
  CLUS_6                            8                             14
  CLUS_7                           10                             11
  CLUS_8                            7                             15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17P12) MUTATED       56     12     28      6
  AMP PEAK 17(17P12) WILD-TYPE     14     74     46     20
D17V1, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         56                           14
  CLUS_2                         12                           74
  CLUS_3                         28                           46
  CLUS_4                          6                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17P12) MUTATED       23     10     32      6     28      2      1
  AMP PEAK 17(17P12) WILD-TYPE     25     36     29     28     19     13      4
D17V2, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         23                           25
  CLUS_2                         10                           36
  CLUS_3                         32                           29
  CLUS_4                          6                           28
  CLUS_5                         28                           19
  CLUS_6                          2                           13
  CLUS_7                          1                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17P12) MUTATED       17     45     26
  AMP PEAK 17(17P12) WILD-TYPE     41     55     34
D17V3, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         17                           41
  CLUS_2                         45                           55
  CLUS_3                         26                           34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17P12) MUTATED       14      6     21     27     16      4
  AMP PEAK 17(17P12) WILD-TYPE     10     22     18     41     21     18
D17V4, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         14                           10
  CLUS_2                          6                           22
  CLUS_3                         21                           18
  CLUS_4                         27                           41
  CLUS_5                         16                           21
  CLUS_6                          4                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17P12) MUTATED       46     37     18
  AMP PEAK 17(17P12) WILD-TYPE     68     40     45
D17V5, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         46                           68
  CLUS_2                         37                           40
  CLUS_3                         18                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17P12) MUTATED       23      3     26     11     12     11     15
  AMP PEAK 17(17P12) WILD-TYPE     23     20     23     35     16     18     18
D17V6, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         23                           23
  CLUS_2                          3                           20
  CLUS_3                         26                           23
  CLUS_4                         11                           35
  CLUS_5                         12                           16
  CLUS_6                         11                           18
  CLUS_7                         15                           18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17P12) MUTATED       36     20     44
  AMP PEAK 17(17P12) WILD-TYPE     71     30     53
D17V7, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         36                           71
  CLUS_2                         20                           30
  CLUS_3                         44                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17P12) MUTATED       33     21     45      1
  AMP PEAK 17(17P12) WILD-TYPE     46     31     55     22
D17V8, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         33                           46
  CLUS_2                         21                           31
  CLUS_3                         45                           55
  CLUS_4                          1                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17P12) MUTATED       28     34     18
  AMP PEAK 17(17P12) WILD-TYPE     55     30     28
D17V9, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         28                           55
  CLUS_2                         34                           30
  CLUS_3                         18                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17P12) MUTATED       12      9     20     11      5     13      8
  AMP PEAK 17(17P12) WILD-TYPE     12     23     17     13      6      9     13
                              vv
clus                           CLUS_8
  AMP PEAK 17(17P12) MUTATED        2
  AMP PEAK 17(17P12) WILD-TYPE     20
D17V10, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         12                           12
  CLUS_2                          9                           23
  CLUS_3                         20                           17
  CLUS_4                         11                           13
  CLUS_5                          5                            6
  CLUS_6                         13                            9
  CLUS_7                          8                           13
  CLUS_8                          2                           20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED       57     11     31      5
  AMP PEAK 18(17P11.2) WILD-TYPE     13     75     43     21
D18V1, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           57                             13
  CLUS_2                           11                             75
  CLUS_3                           31                             43
  CLUS_4                            5                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       24     10     30      7     31      1
  AMP PEAK 18(17P11.2) WILD-TYPE     24     36     31     27     16     14
                                vv
clus                             CLUS_7
  AMP PEAK 18(17P11.2) MUTATED        1
  AMP PEAK 18(17P11.2) WILD-TYPE      4
D18V2, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           24                             24
  CLUS_2                           10                             36
  CLUS_3                           30                             31
  CLUS_4                            7                             27
  CLUS_5                           31                             16
  CLUS_6                            1                             14
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED       16     49     25
  AMP PEAK 18(17P11.2) WILD-TYPE     42     51     35
D18V3, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           16                             42
  CLUS_2                           49                             51
  CLUS_3                           25                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       15      6     22     25     17      5
  AMP PEAK 18(17P11.2) WILD-TYPE      9     22     17     43     20     17
D18V4, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                            6                             22
  CLUS_3                           22                             17
  CLUS_4                           25                             43
  CLUS_5                           17                             20
  CLUS_6                            5                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED       52     34     17
  AMP PEAK 18(17P11.2) WILD-TYPE     62     43     46
D18V5, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           52                             62
  CLUS_2                           34                             43
  CLUS_3                           17                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       23      6     24     10     13     10
  AMP PEAK 18(17P11.2) WILD-TYPE     23     17     25     36     15     19
                                vv
clus                             CLUS_7
  AMP PEAK 18(17P11.2) MUTATED       17
  AMP PEAK 18(17P11.2) WILD-TYPE     16
D18V6, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           23                             23
  CLUS_2                            6                             17
  CLUS_3                           24                             25
  CLUS_4                           10                             36
  CLUS_5                           13                             15
  CLUS_6                           10                             19
  CLUS_7                           17                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED       39     21     42
  AMP PEAK 18(17P11.2) WILD-TYPE     68     29     55
D18V7, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           39                             68
  CLUS_2                           21                             29
  CLUS_3                           42                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED       34     23     43      2
  AMP PEAK 18(17P11.2) WILD-TYPE     45     29     57     21
D18V8, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           34                             45
  CLUS_2                           23                             29
  CLUS_3                           43                             57
  CLUS_4                            2                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED       28     33     22
  AMP PEAK 18(17P11.2) WILD-TYPE     55     31     24
D18V9, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           28                             55
  CLUS_2                           33                             31
  CLUS_3                           22                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       14      8     17     13      5     14
  AMP PEAK 18(17P11.2) WILD-TYPE     10     24     20     11      6      8
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 18(17P11.2) MUTATED        9      3
  AMP PEAK 18(17P11.2) WILD-TYPE     12     19
D18V10, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                            8                             24
  CLUS_3                           17                             20
  CLUS_4                           13                             11
  CLUS_5                            5                              6
  CLUS_6                           14                              8
  CLUS_7                            9                             12
  CLUS_8                            3                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.3) MUTATED       32     10     29      8
  AMP PEAK 19(17Q24.3) WILD-TYPE     38     76     45     18
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           32                             38
  CLUS_2                           10                             76
  CLUS_3                           29                             45
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       21     11     11      9     19      3
  AMP PEAK 19(17Q24.3) WILD-TYPE     27     35     50     25     28     12
                                vv
clus                             CLUS_7
  AMP PEAK 19(17Q24.3) MUTATED        5
  AMP PEAK 19(17Q24.3) WILD-TYPE      0
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           21                             27
  CLUS_2                           11                             35
  CLUS_3                           11                             50
  CLUS_4                            9                             25
  CLUS_5                           19                             28
  CLUS_6                            3                             12
  CLUS_7                            5                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.3) MUTATED       18     40     10
  AMP PEAK 19(17Q24.3) WILD-TYPE     40     60     50
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           18                             40
  CLUS_2                           40                             60
  CLUS_3                           10                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       14      5     12     12     16      9
  AMP PEAK 19(17Q24.3) WILD-TYPE     10     23     27     56     21     13
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                            5                             23
  CLUS_3                           12                             27
  CLUS_4                           12                             56
  CLUS_5                           16                             21
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.3) MUTATED       38     18     22
  AMP PEAK 19(17Q24.3) WILD-TYPE     76     59     41
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           38                             76
  CLUS_2                           18                             59
  CLUS_3                           22                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       17      4      5     15     12     13
  AMP PEAK 19(17Q24.3) WILD-TYPE     29     19     44     31     16     16
                                vv
clus                             CLUS_7
  AMP PEAK 19(17Q24.3) MUTATED       12
  AMP PEAK 19(17Q24.3) WILD-TYPE     21
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           17                             29
  CLUS_2                            4                             19
  CLUS_3                            5                             44
  CLUS_4                           15                             31
  CLUS_5                           12                             16
  CLUS_6                           13                             16
  CLUS_7                           12                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.3) MUTATED       32     22     24
  AMP PEAK 19(17Q24.3) WILD-TYPE     75     28     73
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           32                             75
  CLUS_2                           22                             28
  CLUS_3                           24                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.3) MUTATED       28     22     23      5
  AMP PEAK 19(17Q24.3) WILD-TYPE     51     30     77     18
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           28                             51
  CLUS_2                           22                             30
  CLUS_3                           23                             77
  CLUS_4                            5                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.3) MUTATED       24     22     22
  AMP PEAK 19(17Q24.3) WILD-TYPE     59     42     24
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           24                             59
  CLUS_2                           22                             42
  CLUS_3                           22                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       12     10     10     12      3      5
  AMP PEAK 19(17Q24.3) WILD-TYPE     12     22     27     12      8     17
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 19(17Q24.3) MUTATED       10      6
  AMP PEAK 19(17Q24.3) WILD-TYPE     11     16
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           10                             22
  CLUS_3                           10                             27
  CLUS_4                           12                             12
  CLUS_5                            3                              8
  CLUS_6                            5                             17
  CLUS_7                           10                             11
  CLUS_8                            6                             16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       31     17     50      9
  AMP PEAK 20(19P13.2) WILD-TYPE     39     69     24     17
D20V1, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           31                             39
  CLUS_2                           17                             69
  CLUS_3                           50                             24
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       31     17     27      8     18      4
  AMP PEAK 20(19P13.2) WILD-TYPE     17     29     34     26     29     11
                                vv
clus                             CLUS_7
  AMP PEAK 20(19P13.2) MUTATED        2
  AMP PEAK 20(19P13.2) WILD-TYPE      3
D20V2, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           31                             17
  CLUS_2                           17                             29
  CLUS_3                           27                             34
  CLUS_4                            8                             26
  CLUS_5                           18                             29
  CLUS_6                            4                             11
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       29     39     25
  AMP PEAK 20(19P13.2) WILD-TYPE     29     61     35
D20V3, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           29                             29
  CLUS_2                           39                             61
  CLUS_3                           25                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       16      7     23     28     16      3
  AMP PEAK 20(19P13.2) WILD-TYPE      8     21     16     40     21     19
D20V4, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           16                              8
  CLUS_2                            7                             21
  CLUS_3                           23                             16
  CLUS_4                           28                             40
  CLUS_5                           16                             21
  CLUS_6                            3                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       54     33     20
  AMP PEAK 20(19P13.2) WILD-TYPE     60     44     43
D20V5, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           54                             60
  CLUS_2                           33                             44
  CLUS_3                           20                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       28     11     21     17     11     12
  AMP PEAK 20(19P13.2) WILD-TYPE     18     12     28     29     17     17
                                vv
clus                             CLUS_7
  AMP PEAK 20(19P13.2) MUTATED        7
  AMP PEAK 20(19P13.2) WILD-TYPE     26
D20V6, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           28                             18
  CLUS_2                           11                             12
  CLUS_3                           21                             28
  CLUS_4                           17                             29
  CLUS_5                           11                             17
  CLUS_6                           12                             17
  CLUS_7                            7                             26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       45     19     42
  AMP PEAK 20(19P13.2) WILD-TYPE     62     31     55
D20V7, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           45                             62
  CLUS_2                           19                             31
  CLUS_3                           42                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       37     24     40      5
  AMP PEAK 20(19P13.2) WILD-TYPE     42     28     60     18
D20V8, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           37                             42
  CLUS_2                           24                             28
  CLUS_3                           40                             60
  CLUS_4                            5                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       35     25     19
  AMP PEAK 20(19P13.2) WILD-TYPE     48     39     27
D20V9, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           35                             48
  CLUS_2                           25                             39
  CLUS_3                           19                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       12     20     15      8      4      6
  AMP PEAK 20(19P13.2) WILD-TYPE     12     12     22     16      7     16
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 20(19P13.2) MUTATED        9      5
  AMP PEAK 20(19P13.2) WILD-TYPE     12     17
D20V10, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           20                             12
  CLUS_3                           15                             22
  CLUS_4                            8                             16
  CLUS_5                            4                              7
  CLUS_6                            6                             16
  CLUS_7                            9                             12
  CLUS_8                            5                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       44      5     35      9
  AMP PEAK 21(19Q12) WILD-TYPE     26     81     39     17
D21V1, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         44                           26
  CLUS_2                          5                           81
  CLUS_3                         35                           39
  CLUS_4                          9                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       28     13     16      8     25      1      2
  AMP PEAK 21(19Q12) WILD-TYPE     20     33     45     26     22     14      3
D21V2, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         28                           20
  CLUS_2                         13                           33
  CLUS_3                         16                           45
  CLUS_4                          8                           26
  CLUS_5                         25                           22
  CLUS_6                          1                           14
  CLUS_7                          2                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       25     44     17
  AMP PEAK 21(19Q12) WILD-TYPE     33     56     43
D21V3, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         25                           33
  CLUS_2                         44                           56
  CLUS_3                         17                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19Q12) MUTATED       18      8     19     16     17      8
  AMP PEAK 21(19Q12) WILD-TYPE      6     20     20     52     20     14
D21V4, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         18                            6
  CLUS_2                          8                           20
  CLUS_3                         19                           20
  CLUS_4                         16                           52
  CLUS_5                         17                           20
  CLUS_6                          8                           14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       51     20     22
  AMP PEAK 21(19Q12) WILD-TYPE     63     57     41
D21V5, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         51                           63
  CLUS_2                         20                           57
  CLUS_3                         22                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       27      8     13     15     11      6     13
  AMP PEAK 21(19Q12) WILD-TYPE     19     15     36     31     17     23     20
D21V6, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         27                           19
  CLUS_2                          8                           15
  CLUS_3                         13                           36
  CLUS_4                         15                           31
  CLUS_5                         11                           17
  CLUS_6                          6                           23
  CLUS_7                         13                           20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       43     17     33
  AMP PEAK 21(19Q12) WILD-TYPE     64     33     64
D21V7, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         43                           64
  CLUS_2                         17                           33
  CLUS_3                         33                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       37     19     33      4
  AMP PEAK 21(19Q12) WILD-TYPE     42     33     67     19
D21V8, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         37                           42
  CLUS_2                         19                           33
  CLUS_3                         33                           67
  CLUS_4                          4                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       34     23     17
  AMP PEAK 21(19Q12) WILD-TYPE     49     41     29
D21V9, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         34                           49
  CLUS_2                         23                           41
  CLUS_3                         17                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       12     17      9     13      1     10      8
  AMP PEAK 21(19Q12) WILD-TYPE     12     15     28     11     10     12     13
                              vv
clus                           CLUS_8
  AMP PEAK 21(19Q12) MUTATED        4
  AMP PEAK 21(19Q12) WILD-TYPE     18
D21V10, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         12                           12
  CLUS_2                         17                           15
  CLUS_3                          9                           28
  CLUS_4                         13                           11
  CLUS_5                          1                           10
  CLUS_6                         10                           12
  CLUS_7                          8                           13
  CLUS_8                          4                           18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       32     13     41     12
  AMP PEAK 22(20Q13.33) WILD-TYPE     38     73     33     14
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            32                              38
  CLUS_2                            13                              73
  CLUS_3                            41                              33
  CLUS_4                            12                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       28     14     14     10     29      2
  AMP PEAK 22(20Q13.33) WILD-TYPE     20     32     47     24     18     13
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q13.33) MUTATED        1
  AMP PEAK 22(20Q13.33) WILD-TYPE      4
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            28                              20
  CLUS_2                            14                              32
  CLUS_3                            14                              47
  CLUS_4                            10                              24
  CLUS_5                            29                              18
  CLUS_6                             2                              13
  CLUS_7                             1                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       24     55     14
  AMP PEAK 22(20Q13.33) WILD-TYPE     34     45     46
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            24                              34
  CLUS_2                            55                              45
  CLUS_3                            14                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       14     11     27     15     17      9
  AMP PEAK 22(20Q13.33) WILD-TYPE     10     17     12     53     20     13
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            14                              10
  CLUS_2                            11                              17
  CLUS_3                            27                              12
  CLUS_4                            15                              53
  CLUS_5                            17                              20
  CLUS_6                             9                              13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       55     17     25
  AMP PEAK 22(20Q13.33) WILD-TYPE     59     60     38
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            55                              59
  CLUS_2                            17                              60
  CLUS_3                            25                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       24      8     10     18     16      6
  AMP PEAK 22(20Q13.33) WILD-TYPE     22     15     39     28     12     23
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q13.33) MUTATED       15
  AMP PEAK 22(20Q13.33) WILD-TYPE     18
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            24                              22
  CLUS_2                             8                              15
  CLUS_3                            10                              39
  CLUS_4                            18                              28
  CLUS_5                            16                              12
  CLUS_6                             6                              23
  CLUS_7                            15                              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       45     26     27
  AMP PEAK 22(20Q13.33) WILD-TYPE     62     24     70
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            45                              62
  CLUS_2                            26                              24
  CLUS_3                            27                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       40     23     31      4
  AMP PEAK 22(20Q13.33) WILD-TYPE     39     29     69     19
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            40                              39
  CLUS_2                            23                              29
  CLUS_3                            31                              69
  CLUS_4                             4                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       33     21     27
  AMP PEAK 22(20Q13.33) WILD-TYPE     50     43     19
D22V9, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            33                              50
  CLUS_2                            21                              43
  CLUS_3                            27                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       12     15      7     13      4     11
  AMP PEAK 22(20Q13.33) WILD-TYPE     12     17     30     11      7     11
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 22(20Q13.33) MUTATED       14      5
  AMP PEAK 22(20Q13.33) WILD-TYPE      7     17
D22V10, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            12                              12
  CLUS_2                            15                              17
  CLUS_3                             7                              30
  CLUS_4                            13                              11
  CLUS_5                             4                               7
  CLUS_6                            11                              11
  CLUS_7                            14                               7
  CLUS_8                             5                              17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(21Q21.1) MUTATED       30      7     27      9
  AMP PEAK 23(21Q21.1) WILD-TYPE     40     79     47     17
D23V1, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           30                             40
  CLUS_2                            7                             79
  CLUS_3                           27                             47
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED       21      7     15      6     22      0
  AMP PEAK 23(21Q21.1) WILD-TYPE     27     39     46     28     25     15
                                vv
clus                             CLUS_7
  AMP PEAK 23(21Q21.1) MUTATED        2
  AMP PEAK 23(21Q21.1) WILD-TYPE      3
D23V2, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           21                             27
  CLUS_2                            7                             39
  CLUS_3                           15                             46
  CLUS_4                            6                             28
  CLUS_5                           22                             25
  CLUS_6                            0                             15
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(21Q21.1) MUTATED       18     37     12
  AMP PEAK 23(21Q21.1) WILD-TYPE     40     63     48
D23V3, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           18                             40
  CLUS_2                           37                             63
  CLUS_3                           12                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED       11      7     16     15     12      6
  AMP PEAK 23(21Q21.1) WILD-TYPE     13     21     23     53     25     16
D23V4, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                            7                             21
  CLUS_3                           16                             23
  CLUS_4                           15                             53
  CLUS_5                           12                             25
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(21Q21.1) MUTATED       41     17     15
  AMP PEAK 23(21Q21.1) WILD-TYPE     73     60     48
D23V5, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           41                             73
  CLUS_2                           17                             60
  CLUS_3                           15                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED       18      6     11     11     11      6
  AMP PEAK 23(21Q21.1) WILD-TYPE     28     17     38     35     17     23
                                vv
clus                             CLUS_7
  AMP PEAK 23(21Q21.1) MUTATED       10
  AMP PEAK 23(21Q21.1) WILD-TYPE     23
D23V6, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           18                             28
  CLUS_2                            6                             17
  CLUS_3                           11                             38
  CLUS_4                           11                             35
  CLUS_5                           11                             17
  CLUS_6                            6                             23
  CLUS_7                           10                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(21Q21.1) MUTATED       34     12     26
  AMP PEAK 23(21Q21.1) WILD-TYPE     73     38     71
D23V7, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           34                             73
  CLUS_2                           12                             38
  CLUS_3                           26                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(21Q21.1) MUTATED       30     13     26      3
  AMP PEAK 23(21Q21.1) WILD-TYPE     49     39     74     20
D23V8, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           30                             49
  CLUS_2                           13                             39
  CLUS_3                           26                             74
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(21Q21.1) MUTATED       22     19     17
  AMP PEAK 23(21Q21.1) WILD-TYPE     61     45     29
D23V9, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           22                             61
  CLUS_2                           19                             45
  CLUS_3                           17                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED        8     12      7     11      4      6
  AMP PEAK 23(21Q21.1) WILD-TYPE     16     20     30     13      7     16
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 23(21Q21.1) MUTATED        7      3
  AMP PEAK 23(21Q21.1) WILD-TYPE     14     19
D23V10, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                           12                             20
  CLUS_3                            7                             30
  CLUS_4                           11                             13
  CLUS_5                            4                              7
  CLUS_6                            6                             16
  CLUS_7                            7                             14
  CLUS_8                            3                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(XP21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.2) MUTATED       43     10     32     12
  AMP PEAK 24(XP21.2) WILD-TYPE     27     76     42     14
D24V1, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          43                            27
  CLUS_2                          10                            76
  CLUS_3                          32                            42
  CLUS_4                          12                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       29     12     24      7     21      1
  AMP PEAK 24(XP21.2) WILD-TYPE     19     34     37     27     26     14
                               vv
clus                            CLUS_7
  AMP PEAK 24(XP21.2) MUTATED        3
  AMP PEAK 24(XP21.2) WILD-TYPE      2
D24V2, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          29                            19
  CLUS_2                          12                            34
  CLUS_3                          24                            37
  CLUS_4                           7                            27
  CLUS_5                          21                            26
  CLUS_6                           1                            14
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.2) MUTATED       22     41     21
  AMP PEAK 24(XP21.2) WILD-TYPE     36     59     39
D24V3, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          22                            36
  CLUS_2                          41                            59
  CLUS_3                          21                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       13      7     20     23     16      5
  AMP PEAK 24(XP21.2) WILD-TYPE     11     21     19     45     21     17
D24V4, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                           7                            21
  CLUS_3                          20                            19
  CLUS_4                          23                            45
  CLUS_5                          16                            21
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.2) MUTATED       48     29     20
  AMP PEAK 24(XP21.2) WILD-TYPE     66     48     43
D24V5, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          48                            66
  CLUS_2                          29                            48
  CLUS_3                          20                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       25      6     21     13     11      7
  AMP PEAK 24(XP21.2) WILD-TYPE     21     17     28     33     17     22
                               vv
clus                            CLUS_7
  AMP PEAK 24(XP21.2) MUTATED       14
  AMP PEAK 24(XP21.2) WILD-TYPE     19
D24V6, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          25                            21
  CLUS_2                           6                            17
  CLUS_3                          21                            28
  CLUS_4                          13                            33
  CLUS_5                          11                            17
  CLUS_6                           7                            22
  CLUS_7                          14                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.2) MUTATED       38     19     38
  AMP PEAK 24(XP21.2) WILD-TYPE     69     31     59
D24V7, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          38                            69
  CLUS_2                          19                            31
  CLUS_3                          38                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.2) MUTATED       37     17     38      3
  AMP PEAK 24(XP21.2) WILD-TYPE     42     35     62     20
D24V8, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          37                            42
  CLUS_2                          17                            35
  CLUS_3                          38                            62
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.2) MUTATED       30     25     22
  AMP PEAK 24(XP21.2) WILD-TYPE     53     39     24
D24V9, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          30                            53
  CLUS_2                          25                            39
  CLUS_3                          22                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       13     18     12     13      4      7
  AMP PEAK 24(XP21.2) WILD-TYPE     11     14     25     11      7     15
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 24(XP21.2) MUTATED        8      2
  AMP PEAK 24(XP21.2) WILD-TYPE     13     20
D24V10, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                          18                            14
  CLUS_3                          12                            25
  CLUS_4                          13                            11
  CLUS_5                           4                             7
  CLUS_6                           7                            15
  CLUS_7                           8                            13
  CLUS_8                           2                            20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED       10      3     26      7
  AMP PEAK 25(XQ21.1) WILD-TYPE     60     83     48     19
D25V1, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           3                            83
  CLUS_3                          26                            48
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED       15      5      5      6     12      0
  AMP PEAK 25(XQ21.1) WILD-TYPE     33     41     56     28     35     15
                               vv
clus                            CLUS_7
  AMP PEAK 25(XQ21.1) MUTATED        3
  AMP PEAK 25(XQ21.1) WILD-TYPE      2
D25V2, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          15                            33
  CLUS_2                           5                            41
  CLUS_3                           5                            56
  CLUS_4                           6                            28
  CLUS_5                          12                            35
  CLUS_6                           0                            15
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED       13     24      4
  AMP PEAK 25(XQ21.1) WILD-TYPE     45     76     56
D25V3, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          13                            45
  CLUS_2                          24                            76
  CLUS_3                           4                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED        6      4     12      8      7      4
  AMP PEAK 25(XQ21.1) WILD-TYPE     18     24     27     60     30     18
D25V4, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           6                            18
  CLUS_2                           4                            24
  CLUS_3                          12                            27
  CLUS_4                           8                            60
  CLUS_5                           7                            30
  CLUS_6                           4                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED       28      8     10
  AMP PEAK 25(XQ21.1) WILD-TYPE     86     69     53
D25V5, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          28                            86
  CLUS_2                           8                            69
  CLUS_3                          10                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED       16      2      3      7      9      5
  AMP PEAK 25(XQ21.1) WILD-TYPE     30     21     46     39     19     24
                               vv
clus                            CLUS_7
  AMP PEAK 25(XQ21.1) MUTATED        4
  AMP PEAK 25(XQ21.1) WILD-TYPE     29
D25V6, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          16                            30
  CLUS_2                           2                            21
  CLUS_3                           3                            46
  CLUS_4                           7                            39
  CLUS_5                           9                            19
  CLUS_6                           5                            24
  CLUS_7                           4                            29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED       20     13     12
  AMP PEAK 25(XQ21.1) WILD-TYPE     87     37     85
D25V7, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          20                            87
  CLUS_2                          13                            37
  CLUS_3                          12                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED       18     11     13      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     61     41     87     20
D25V8, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          18                            61
  CLUS_2                          11                            41
  CLUS_3                          13                            87
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED       19     10      9
  AMP PEAK 25(XQ21.1) WILD-TYPE     64     54     37
D25V9, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          19                            64
  CLUS_2                          10                            54
  CLUS_3                           9                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED        6      8      5      7      0      5
  AMP PEAK 25(XQ21.1) WILD-TYPE     18     24     32     17     11     17
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 25(XQ21.1) MUTATED        4      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     17     19
D25V10, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           6                            18
  CLUS_2                           8                            24
  CLUS_3                           5                            32
  CLUS_4                           7                            17
  CLUS_5                           0                            11
  CLUS_6                           5                            17
  CLUS_7                           4                            17
  CLUS_8                           3                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       18     22     26      3
  DEL PEAK  1(1P36.32) WILD-TYPE     52     64     48     23
D26V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           18                             52
  CLUS_2                           22                             64
  CLUS_3                           26                             48
  CLUS_4                            3                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        9      1     37      8      6      5
  DEL PEAK  1(1P36.32) WILD-TYPE     39     45     24     26     41     10
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED        3
  DEL PEAK  1(1P36.32) WILD-TYPE      2
D26V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            9                             39
  CLUS_2                            1                             45
  CLUS_3                           37                             24
  CLUS_4                            8                             26
  CLUS_5                            6                             41
  CLUS_6                            5                             10
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       11     10     35
  DEL PEAK  1(1P36.32) WILD-TYPE     47     90     25
D26V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                             47
  CLUS_2                           10                             90
  CLUS_3                           35                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        6      2      6     37      1      4
  DEL PEAK  1(1P36.32) WILD-TYPE     18     26     33     31     36     18
D26V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            2                             26
  CLUS_3                            6                             33
  CLUS_4                           37                             31
  CLUS_5                            1                             36
  CLUS_6                            4                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       13     45     10
  DEL PEAK  1(1P36.32) WILD-TYPE    101     32     53
D26V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           13                            101
  CLUS_2                           45                             32
  CLUS_3                           10                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        8      1     30      7      4     15
  DEL PEAK  1(1P36.32) WILD-TYPE     38     22     19     39     24     14
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED        3
  DEL PEAK  1(1P36.32) WILD-TYPE     30
D26V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            8                             38
  CLUS_2                            1                             22
  CLUS_3                           30                             19
  CLUS_4                            7                             39
  CLUS_5                            4                             24
  CLUS_6                           15                             14
  CLUS_7                            3                             30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       15      6     48
  DEL PEAK  1(1P36.32) WILD-TYPE     92     44     49
D26V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           15                             92
  CLUS_2                            6                             44
  CLUS_3                           48                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       11      5     49      4
  DEL PEAK  1(1P36.32) WILD-TYPE     68     47     51     19
D26V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                            5                             47
  CLUS_3                           49                             51
  CLUS_4                            4                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       14     31      4
  DEL PEAK  1(1P36.32) WILD-TYPE     69     33     42
D26V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           14                             69
  CLUS_2                           31                             33
  CLUS_3                            4                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        4      5     18      5      7      2
  DEL PEAK  1(1P36.32) WILD-TYPE     20     27     19     19      4     20
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.32) MUTATED        3      5
  DEL PEAK  1(1P36.32) WILD-TYPE     18     17
D26V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            5                             27
  CLUS_3                           18                             19
  CLUS_4                            5                             19
  CLUS_5                            7                              4
  CLUS_6                            2                             20
  CLUS_7                            3                             18
  CLUS_8                            5                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  2(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       31      5     33     11
  DEL PEAK  2(1Q44) WILD-TYPE     39     81     41     15
D27V1, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        31                          39
  CLUS_2                         5                          81
  CLUS_3                        33                          41
  CLUS_4                        11                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED       27     14     11      3     22      1      2
  DEL PEAK  2(1Q44) WILD-TYPE     21     32     50     31     25     14      3
D27V2, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        27                          21
  CLUS_2                        14                          32
  CLUS_3                        11                          50
  CLUS_4                         3                          31
  CLUS_5                        22                          25
  CLUS_6                         1                          14
  CLUS_7                         2                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       20     40     11
  DEL PEAK  2(1Q44) WILD-TYPE     38     60     49
D27V3, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        20                          38
  CLUS_2                        40                          60
  CLUS_3                        11                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1Q44) MUTATED       15      7     18     11     15      5
  DEL PEAK  2(1Q44) WILD-TYPE      9     21     21     57     22     17
D27V4, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        15                           9
  CLUS_2                         7                          21
  CLUS_3                        18                          21
  CLUS_4                        11                          57
  CLUS_5                        15                          22
  CLUS_6                         5                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       50     14     16
  DEL PEAK  2(1Q44) WILD-TYPE     64     63     47
D27V5, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        50                          64
  CLUS_2                        14                          63
  CLUS_3                        16                          47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED       27      6     10     10     11      3     13
  DEL PEAK  2(1Q44) WILD-TYPE     19     17     39     36     17     26     20
D27V6, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        27                          19
  CLUS_2                         6                          17
  CLUS_3                        10                          39
  CLUS_4                        10                          36
  CLUS_5                        11                          17
  CLUS_6                         3                          26
  CLUS_7                        13                          20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       36     22     22
  DEL PEAK  2(1Q44) WILD-TYPE     71     28     75
D27V7, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        36                          71
  CLUS_2                        22                          28
  CLUS_3                        22                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       35     20     23      2
  DEL PEAK  2(1Q44) WILD-TYPE     44     32     77     21
D27V8, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        35                          44
  CLUS_2                        20                          32
  CLUS_3                        23                          77
  CLUS_4                         2                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       28     18     22
  DEL PEAK  2(1Q44) WILD-TYPE     55     46     24
D27V9, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        28                          55
  CLUS_2                        18                          46
  CLUS_3                        22                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED       11     16      9     12      0      9      9
  DEL PEAK  2(1Q44) WILD-TYPE     13     16     28     12     11     13     12
                             vv
clus                          CLUS_8
  DEL PEAK  2(1Q44) MUTATED        2
  DEL PEAK  2(1Q44) WILD-TYPE     20
D27V10, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        11                          13
  CLUS_2                        16                          16
  CLUS_3                         9                          28
  CLUS_4                        12                          12
  CLUS_5                         0                          11
  CLUS_6                         9                          13
  CLUS_7                         9                          12
  CLUS_8                         2                          20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       40     12     36      6
  DEL PEAK  3(2P25.3) WILD-TYPE     30     74     38     20
D28V1, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          40                            30
  CLUS_2                          12                            74
  CLUS_3                          36                            38
  CLUS_4                           6                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       23     11     35      3     15      4
  DEL PEAK  3(2P25.3) WILD-TYPE     25     35     26     31     32     11
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED        3
  DEL PEAK  3(2P25.3) WILD-TYPE      2
D28V2, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          23                            25
  CLUS_2                          11                            35
  CLUS_3                          35                            26
  CLUS_4                           3                            31
  CLUS_5                          15                            32
  CLUS_6                           4                            11
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       16     33     30
  DEL PEAK  3(2P25.3) WILD-TYPE     42     67     30
D28V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          16                            42
  CLUS_2                          33                            67
  CLUS_3                          30                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       12      5     13     34     12      3
  DEL PEAK  3(2P25.3) WILD-TYPE     12     23     26     34     25     19
D28V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                           5                            23
  CLUS_3                          13                            26
  CLUS_4                          34                            34
  CLUS_5                          12                            25
  CLUS_6                           3                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       42     42      9
  DEL PEAK  3(2P25.3) WILD-TYPE     72     35     54
D28V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          42                            72
  CLUS_2                          42                            35
  CLUS_3                           9                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       20      5     28      8      8     14
  DEL PEAK  3(2P25.3) WILD-TYPE     26     18     21     38     20     15
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED       10
  DEL PEAK  3(2P25.3) WILD-TYPE     23
D28V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          20                            26
  CLUS_2                           5                            18
  CLUS_3                          28                            21
  CLUS_4                           8                            38
  CLUS_5                           8                            20
  CLUS_6                          14                            15
  CLUS_7                          10                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       25     21     47
  DEL PEAK  3(2P25.3) WILD-TYPE     82     29     50
D28V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          25                            82
  CLUS_2                          21                            29
  CLUS_3                          47                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       26     17     49      1
  DEL PEAK  3(2P25.3) WILD-TYPE     53     35     51     22
D28V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          26                            53
  CLUS_2                          17                            35
  CLUS_3                          49                            51
  CLUS_4                           1                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       19     35     19
  DEL PEAK  3(2P25.3) WILD-TYPE     64     29     27
D28V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          19                            64
  CLUS_2                          35                            29
  CLUS_3                          19                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        9     12     23     11      5      5
  DEL PEAK  3(2P25.3) WILD-TYPE     15     20     14     13      6     17
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(2P25.3) MUTATED        7      1
  DEL PEAK  3(2P25.3) WILD-TYPE     14     21
D28V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                          12                            20
  CLUS_3                          23                            14
  CLUS_4                          11                            13
  CLUS_5                           5                             6
  CLUS_6                           5                            17
  CLUS_7                           7                            14
  CLUS_8                           1                            21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       55     10     32     11
  DEL PEAK  4(2Q37.3) WILD-TYPE     15     76     42     15
D29V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          55                            15
  CLUS_2                          10                            76
  CLUS_3                          32                            42
  CLUS_4                          11                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       29     14     28      7     25      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     19     32     33     27     22     12
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        2
  DEL PEAK  4(2Q37.3) WILD-TYPE      3
D29V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          29                            19
  CLUS_2                          14                            32
  CLUS_3                          28                            33
  CLUS_4                           7                            27
  CLUS_5                          25                            22
  CLUS_6                           3                            12
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       19     48     28
  DEL PEAK  4(2Q37.3) WILD-TYPE     39     52     32
D29V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          19                            39
  CLUS_2                          48                            52
  CLUS_3                          28                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       15      7     19     29     19      6
  DEL PEAK  4(2Q37.3) WILD-TYPE      9     21     20     39     18     16
D29V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          15                             9
  CLUS_2                           7                            21
  CLUS_3                          19                            20
  CLUS_4                          29                            39
  CLUS_5                          19                            18
  CLUS_6                           6                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       54     35     17
  DEL PEAK  4(2Q37.3) WILD-TYPE     60     42     46
D29V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          54                            60
  CLUS_2                          35                            42
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       26      7     16     10     12     19
  DEL PEAK  4(2Q37.3) WILD-TYPE     20     16     33     36     16     10
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED       16
  DEL PEAK  4(2Q37.3) WILD-TYPE     17
D29V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          26                            20
  CLUS_2                           7                            16
  CLUS_3                          16                            33
  CLUS_4                          10                            36
  CLUS_5                          12                            16
  CLUS_6                          19                            10
  CLUS_7                          16                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       38     25     44
  DEL PEAK  4(2Q37.3) WILD-TYPE     69     25     53
D29V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          38                            69
  CLUS_2                          25                            25
  CLUS_3                          44                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       38     18     47      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     41     34     53     19
D29V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          38                            41
  CLUS_2                          18                            34
  CLUS_3                          47                            53
  CLUS_4                           4                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       29     32     24
  DEL PEAK  4(2Q37.3) WILD-TYPE     54     32     22
D29V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          29                            54
  CLUS_2                          32                            32
  CLUS_3                          24                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       12     16     14     16      7      7
  DEL PEAK  4(2Q37.3) WILD-TYPE     12     16     23      8      4     15
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  4(2Q37.3) MUTATED        9      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     12     18
D29V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                          16                            16
  CLUS_3                          14                            23
  CLUS_4                          16                             8
  CLUS_5                           7                             4
  CLUS_6                           7                            15
  CLUS_7                           9                            12
  CLUS_8                           4                            18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       55      8     34     13
  DEL PEAK  5(2Q37.3) WILD-TYPE     15     78     40     13
D30V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          55                            15
  CLUS_2                           8                            78
  CLUS_3                          34                            40
  CLUS_4                          13                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       31     13     28      8     25      3
  DEL PEAK  5(2Q37.3) WILD-TYPE     17     33     33     26     22     12
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        2
  DEL PEAK  5(2Q37.3) WILD-TYPE      3
D30V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          31                            17
  CLUS_2                          13                            33
  CLUS_3                          28                            33
  CLUS_4                           8                            26
  CLUS_5                          25                            22
  CLUS_6                           3                            12
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       21     47     28
  DEL PEAK  5(2Q37.3) WILD-TYPE     37     53     32
D30V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          21                            37
  CLUS_2                          47                            53
  CLUS_3                          28                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       17      7     19     29     19      5
  DEL PEAK  5(2Q37.3) WILD-TYPE      7     21     20     39     18     17
D30V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          17                             7
  CLUS_2                           7                            21
  CLUS_3                          19                            20
  CLUS_4                          29                            39
  CLUS_5                          19                            18
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       56     35     17
  DEL PEAK  5(2Q37.3) WILD-TYPE     58     42     46
D30V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          56                            58
  CLUS_2                          35                            42
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       28      7     16     12     12     19
  DEL PEAK  5(2Q37.3) WILD-TYPE     18     16     33     34     16     10
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED       14
  DEL PEAK  5(2Q37.3) WILD-TYPE     19
D30V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          28                            18
  CLUS_2                           7                            16
  CLUS_3                          16                            33
  CLUS_4                          12                            34
  CLUS_5                          12                            16
  CLUS_6                          19                            10
  CLUS_7                          14                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       42     24     43
  DEL PEAK  5(2Q37.3) WILD-TYPE     65     26     54
D30V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          42                            65
  CLUS_2                          24                            26
  CLUS_3                          43                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       40     19     45      5
  DEL PEAK  5(2Q37.3) WILD-TYPE     39     33     55     18
D30V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          40                            39
  CLUS_2                          19                            33
  CLUS_3                          45                            55
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       34     29     23
  DEL PEAK  5(2Q37.3) WILD-TYPE     49     35     23
D30V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          34                            49
  CLUS_2                          29                            35
  CLUS_3                          23                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       12     18     13     15      6      8
  DEL PEAK  5(2Q37.3) WILD-TYPE     12     14     24      9      5     14
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  5(2Q37.3) MUTATED        9      5
  DEL PEAK  5(2Q37.3) WILD-TYPE     12     17
D30V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                          18                            14
  CLUS_3                          13                            24
  CLUS_4                          15                             9
  CLUS_5                           6                             5
  CLUS_6                           8                            14
  CLUS_7                           9                            12
  CLUS_8                           5                            17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  6(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.31) MUTATED       22     12     24      7
  DEL PEAK  6(3P21.31) WILD-TYPE     48     74     50     19
D31V1, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           12                             74
  CLUS_3                           24                             50
  CLUS_4                            7                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       24     10      3     12     13      2
  DEL PEAK  6(3P21.31) WILD-TYPE     24     36     58     22     34     13
                                vv
clus                             CLUS_7
  DEL PEAK  6(3P21.31) MUTATED        1
  DEL PEAK  6(3P21.31) WILD-TYPE      4
D31V2, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           24                             24
  CLUS_2                           10                             36
  CLUS_3                            3                             58
  CLUS_4                           12                             22
  CLUS_5                           13                             34
  CLUS_6                            2                             13
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.31) MUTATED       16     34      8
  DEL PEAK  6(3P21.31) WILD-TYPE     42     66     52
D31V3, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           16                             42
  CLUS_2                           34                             66
  CLUS_3                            8                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       10      8     10      5     17      8
  DEL PEAK  6(3P21.31) WILD-TYPE     14     20     29     63     20     14
D31V4, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            8                             20
  CLUS_3                           10                             29
  CLUS_4                            5                             63
  CLUS_5                           17                             20
  CLUS_6                            8                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.31) MUTATED       35      5     25
  DEL PEAK  6(3P21.31) WILD-TYPE     79     72     38
D31V5, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           35                             79
  CLUS_2                            5                             72
  CLUS_3                           25                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       22      6      2     19      5      3
  DEL PEAK  6(3P21.31) WILD-TYPE     24     17     47     27     23     26
                                vv
clus                             CLUS_7
  DEL PEAK  6(3P21.31) MUTATED        8
  DEL PEAK  6(3P21.31) WILD-TYPE     25
D31V6, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           22                             24
  CLUS_2                            6                             17
  CLUS_3                            2                             47
  CLUS_4                           19                             27
  CLUS_5                            5                             23
  CLUS_6                            3                             26
  CLUS_7                            8                             25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.31) MUTATED       38     15     12
  DEL PEAK  6(3P21.31) WILD-TYPE     69     35     85
D31V7, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           38                             69
  CLUS_2                           15                             35
  CLUS_3                           12                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.31) MUTATED       28     14     13     10
  DEL PEAK  6(3P21.31) WILD-TYPE     51     38     87     13
D31V8, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           28                             51
  CLUS_2                           14                             38
  CLUS_3                           13                             87
  CLUS_4                           10                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.31) MUTATED       31      8     16
  DEL PEAK  6(3P21.31) WILD-TYPE     52     56     30
D31V9, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           31                             52
  CLUS_2                            8                             56
  CLUS_3                           16                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       12     14      0      8      2      4
  DEL PEAK  6(3P21.31) WILD-TYPE     12     18     37     16      9     18
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  6(3P21.31) MUTATED        5     10
  DEL PEAK  6(3P21.31) WILD-TYPE     16     12
D31V10, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           14                             18
  CLUS_3                            0                             37
  CLUS_4                            8                             16
  CLUS_5                            2                              9
  CLUS_6                            4                             18
  CLUS_7                            5                             16
  CLUS_8                           10                             12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        9      8     24     10
  DEL PEAK  7(3Q13.31) WILD-TYPE     61     78     50     16
D32V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            9                             61
  CLUS_2                            8                             78
  CLUS_3                           24                             50
  CLUS_4                           10                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED       13      6      4      9     13      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     35     40     57     25     34     12
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        3
  DEL PEAK  7(3Q13.31) WILD-TYPE      2
D32V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           13                             35
  CLUS_2                            6                             40
  CLUS_3                            4                             57
  CLUS_4                            9                             25
  CLUS_5                           13                             34
  CLUS_6                            3                             12
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       14     23      7
  DEL PEAK  7(3Q13.31) WILD-TYPE     44     77     53
D32V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           14                             44
  CLUS_2                           23                             77
  CLUS_3                            7                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        5      6     12      6      6      9
  DEL PEAK  7(3Q13.31) WILD-TYPE     19     22     27     62     31     13
D32V4, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            6                             22
  CLUS_3                           12                             27
  CLUS_4                            6                             62
  CLUS_5                            6                             31
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       25      7     19
  DEL PEAK  7(3Q13.31) WILD-TYPE     89     70     44
D32V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           25                             89
  CLUS_2                            7                             70
  CLUS_3                           19                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED       13      3      3     16      7      4
  DEL PEAK  7(3Q13.31) WILD-TYPE     33     20     46     30     21     25
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        5
  DEL PEAK  7(3Q13.31) WILD-TYPE     28
D32V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           13                             33
  CLUS_2                            3                             20
  CLUS_3                            3                             46
  CLUS_4                           16                             30
  CLUS_5                            7                             21
  CLUS_6                            4                             25
  CLUS_7                            5                             28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       30      9     11
  DEL PEAK  7(3Q13.31) WILD-TYPE     77     41     86
D32V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           30                             77
  CLUS_2                            9                             41
  CLUS_3                           11                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       23      9     11      7
  DEL PEAK  7(3Q13.31) WILD-TYPE     56     43     89     16
D32V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           23                             56
  CLUS_2                            9                             43
  CLUS_3                           11                             89
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       25      7     10
  DEL PEAK  7(3Q13.31) WILD-TYPE     58     57     36
D32V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           25                             58
  CLUS_2                            7                             57
  CLUS_3                           10                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        4     13      2      4      2      5
  DEL PEAK  7(3Q13.31) WILD-TYPE     20     19     35     20      9     17
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  7(3Q13.31) MUTATED        5      7
  DEL PEAK  7(3Q13.31) WILD-TYPE     16     15
D32V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                           13                             19
  CLUS_3                            2                             35
  CLUS_4                            4                             20
  CLUS_5                            2                              9
  CLUS_6                            5                             17
  CLUS_7                            5                             16
  CLUS_8                            7                             15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  8(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED       18      7     18     11
  DEL PEAK  8(3Q29) WILD-TYPE     52     79     56     15
D33V1, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        18                          52
  CLUS_2                         7                          79
  CLUS_3                        18                          56
  CLUS_4                        11                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED       15      5     10      6     13      1      4
  DEL PEAK  8(3Q29) WILD-TYPE     33     41     51     28     34     14      1
D33V2, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        15                          33
  CLUS_2                         5                          41
  CLUS_3                        10                          51
  CLUS_4                         6                          28
  CLUS_5                        13                          34
  CLUS_6                         1                          14
  CLUS_7                         4                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       12     23     11
  DEL PEAK  8(3Q29) WILD-TYPE     46     77     49
D33V3, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        12                          46
  CLUS_2                        23                          77
  CLUS_3                        11                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q29) MUTATED        5      6      9     11     10      5
  DEL PEAK  8(3Q29) WILD-TYPE     19     22     30     57     27     17
D33V4, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         5                          19
  CLUS_2                         6                          22
  CLUS_3                         9                          30
  CLUS_4                        11                          57
  CLUS_5                        10                          27
  CLUS_6                         5                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       27     12     15
  DEL PEAK  8(3Q29) WILD-TYPE     87     65     48
D33V5, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        27                          87
  CLUS_2                        12                          65
  CLUS_3                        15                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED       17      4      9     10      5      3      6
  DEL PEAK  8(3Q29) WILD-TYPE     29     19     40     36     23     26     27
D33V6, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        17                          29
  CLUS_2                         4                          19
  CLUS_3                         9                          40
  CLUS_4                        10                          36
  CLUS_5                         5                          23
  CLUS_6                         3                          26
  CLUS_7                         6                          27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       27     10     16
  DEL PEAK  8(3Q29) WILD-TYPE     80     40     81
D33V7, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        27                          80
  CLUS_2                        10                          40
  CLUS_3                        16                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED       26      7     16      4
  DEL PEAK  8(3Q29) WILD-TYPE     53     45     84     19
D33V8, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        26                          53
  CLUS_2                         7                          45
  CLUS_3                        16                          84
  CLUS_4                         4                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       23     11      9
  DEL PEAK  8(3Q29) WILD-TYPE     60     53     37
D33V9, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        23                          60
  CLUS_2                        11                          53
  CLUS_3                         9                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED        7     13      6      3      2      7      2
  DEL PEAK  8(3Q29) WILD-TYPE     17     19     31     21      9     15     19
                             vv
clus                          CLUS_8
  DEL PEAK  8(3Q29) MUTATED        3
  DEL PEAK  8(3Q29) WILD-TYPE     19
D33V10, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         7                          17
  CLUS_2                        13                          19
  CLUS_3                         6                          31
  CLUS_4                         3                          21
  CLUS_5                         2                           9
  CLUS_6                         7                          15
  CLUS_7                         2                          19
  CLUS_8                         3                          19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       38      8     41      7
  DEL PEAK  9(4Q35.1) WILD-TYPE     32     78     33     19
D34V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          38                            32
  CLUS_2                           8                            78
  CLUS_3                          41                            33
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       21     13     20      9     26      1
  DEL PEAK  9(4Q35.1) WILD-TYPE     27     33     41     25     21     14
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED        4
  DEL PEAK  9(4Q35.1) WILD-TYPE      1
D34V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          21                            27
  CLUS_2                          13                            33
  CLUS_3                          20                            41
  CLUS_4                           9                            25
  CLUS_5                          26                            21
  CLUS_6                           1                            14
  CLUS_7                           4                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       21     45     19
  DEL PEAK  9(4Q35.1) WILD-TYPE     37     55     41
D34V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          21                            37
  CLUS_2                          45                            55
  CLUS_3                          19                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       10      8     23     19     19      6
  DEL PEAK  9(4Q35.1) WILD-TYPE     14     20     16     49     18     16
D34V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                           8                            20
  CLUS_3                          23                            16
  CLUS_4                          19                            49
  CLUS_5                          19                            18
  CLUS_6                           6                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       54     24     16
  DEL PEAK  9(4Q35.1) WILD-TYPE     60     53     47
D34V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          54                            60
  CLUS_2                          24                            53
  CLUS_3                          16                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       23      6     15     13     16      8
  DEL PEAK  9(4Q35.1) WILD-TYPE     23     17     34     33     12     21
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED       13
  DEL PEAK  9(4Q35.1) WILD-TYPE     20
D34V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          23                            23
  CLUS_2                           6                            17
  CLUS_3                          15                            34
  CLUS_4                          13                            33
  CLUS_5                          16                            12
  CLUS_6                           8                            21
  CLUS_7                          13                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       41     19     33
  DEL PEAK  9(4Q35.1) WILD-TYPE     66     31     64
D34V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          41                            66
  CLUS_2                          19                            31
  CLUS_3                          33                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       35     15     36      7
  DEL PEAK  9(4Q35.1) WILD-TYPE     44     37     64     16
D34V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          35                            44
  CLUS_2                          15                            37
  CLUS_3                          36                            64
  CLUS_4                           7                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       35     26     18
  DEL PEAK  9(4Q35.1) WILD-TYPE     48     38     28
D34V9, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          35                            48
  CLUS_2                          26                            38
  CLUS_3                          18                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED        8     14     11     14      5     12
  DEL PEAK  9(4Q35.1) WILD-TYPE     16     18     26     10      6     10
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  9(4Q35.1) MUTATED        7      8
  DEL PEAK  9(4Q35.1) WILD-TYPE     14     14
D34V10, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                          14                            18
  CLUS_3                          11                            26
  CLUS_4                          14                            10
  CLUS_5                           5                             6
  CLUS_6                          12                            10
  CLUS_7                           7                            14
  CLUS_8                           8                            14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 10(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED       12     14      3      4
  DEL PEAK 10(5P15.33) WILD-TYPE     58     72     71     22
D35V1, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           12                             58
  CLUS_2                           14                             72
  CLUS_3                            3                             71
  CLUS_4                            4                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        5      8      3      3     13      1
  DEL PEAK 10(5P15.33) WILD-TYPE     43     38     58     31     34     14
                                vv
clus                             CLUS_7
  DEL PEAK 10(5P15.33) MUTATED        0
  DEL PEAK 10(5P15.33) WILD-TYPE      5
D35V2, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            5                             43
  CLUS_2                            8                             38
  CLUS_3                            3                             58
  CLUS_4                            3                             31
  CLUS_5                           13                             34
  CLUS_6                            1                             14
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED        7     21      3
  DEL PEAK 10(5P15.33) WILD-TYPE     51     79     57
D35V3, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            7                             51
  CLUS_2                           21                             79
  CLUS_3                            3                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        2      5      9      2     11      2
  DEL PEAK 10(5P15.33) WILD-TYPE     22     23     30     66     26     20
D35V4, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            2                             22
  CLUS_2                            5                             23
  CLUS_3                            9                             30
  CLUS_4                            2                             66
  CLUS_5                           11                             26
  CLUS_6                            2                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       18      3     11
  DEL PEAK 10(5P15.33) WILD-TYPE     96     74     52
D35V5, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           18                             96
  CLUS_2                            3                             74
  CLUS_3                           11                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        4      3      3      5      8      0
  DEL PEAK 10(5P15.33) WILD-TYPE     42     20     46     41     20     29
                                vv
clus                             CLUS_7
  DEL PEAK 10(5P15.33) MUTATED        9
  DEL PEAK 10(5P15.33) WILD-TYPE     24
D35V6, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            4                             42
  CLUS_2                            3                             20
  CLUS_3                            3                             46
  CLUS_4                            5                             41
  CLUS_5                            8                             20
  CLUS_6                            0                             29
  CLUS_7                            9                             24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       14     10      9
  DEL PEAK 10(5P15.33) WILD-TYPE     93     40     88
D35V7, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           14                             93
  CLUS_2                           10                             40
  CLUS_3                            9                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED       13     11      8      1
  DEL PEAK 10(5P15.33) WILD-TYPE     66     41     92     22
D35V8, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           13                             66
  CLUS_2                           11                             41
  CLUS_3                            8                             92
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       10      5     12
  DEL PEAK 10(5P15.33) WILD-TYPE     73     59     34
D35V9, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           10                             73
  CLUS_2                            5                             59
  CLUS_3                           12                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        4      4      2      7      0      5
  DEL PEAK 10(5P15.33) WILD-TYPE     20     28     35     17     11     17
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 10(5P15.33) MUTATED        4      1
  DEL PEAK 10(5P15.33) WILD-TYPE     17     21
D35V10, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            4                             28
  CLUS_3                            2                             35
  CLUS_4                            7                             17
  CLUS_5                            0                             11
  CLUS_6                            5                             17
  CLUS_7                            4                             17
  CLUS_8                            1                             21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 11(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       29     19     25      8
  DEL PEAK 11(6P25.3) WILD-TYPE     41     67     49     18
D36V1, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          29                            41
  CLUS_2                          19                            67
  CLUS_3                          25                            49
  CLUS_4                           8                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED       12      9     32      6     17      3
  DEL PEAK 11(6P25.3) WILD-TYPE     36     37     29     28     30     12
                               vv
clus                            CLUS_7
  DEL PEAK 11(6P25.3) MUTATED        2
  DEL PEAK 11(6P25.3) WILD-TYPE      3
D36V2, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                           9                            37
  CLUS_3                          32                            29
  CLUS_4                           6                            28
  CLUS_5                          17                            30
  CLUS_6                           3                            12
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       10     28     29
  DEL PEAK 11(6P25.3) WILD-TYPE     48     72     31
D36V3, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          10                            48
  CLUS_2                          28                            72
  CLUS_3                          29                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED        3      8     11     28     13      4
  DEL PEAK 11(6P25.3) WILD-TYPE     21     20     28     40     24     18
D36V4, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           8                            20
  CLUS_3                          11                            28
  CLUS_4                          28                            40
  CLUS_5                          13                            24
  CLUS_6                           4                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       29     37     13
  DEL PEAK 11(6P25.3) WILD-TYPE     85     40     50
D36V5, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          29                            85
  CLUS_2                          37                            40
  CLUS_3                          13                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED        7      6     26      9      8     11
  DEL PEAK 11(6P25.3) WILD-TYPE     39     17     23     37     20     18
                               vv
clus                            CLUS_7
  DEL PEAK 11(6P25.3) MUTATED       12
  DEL PEAK 11(6P25.3) WILD-TYPE     21
D36V6, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           7                            39
  CLUS_2                           6                            17
  CLUS_3                          26                            23
  CLUS_4                           9                            37
  CLUS_5                           8                            20
  CLUS_6                          11                            18
  CLUS_7                          12                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       25     15     41
  DEL PEAK 11(6P25.3) WILD-TYPE     82     35     56
D36V7, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          25                            82
  CLUS_2                          15                            35
  CLUS_3                          41                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       20     16     42      3
  DEL PEAK 11(6P25.3) WILD-TYPE     59     36     58     20
D36V8, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          20                            59
  CLUS_2                          16                            36
  CLUS_3                          42                            58
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       19     25     18
  DEL PEAK 11(6P25.3) WILD-TYPE     64     39     28
D36V9, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          19                            64
  CLUS_2                          25                            39
  CLUS_3                          18                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED        6      9     17      5      5      7
  DEL PEAK 11(6P25.3) WILD-TYPE     18     23     20     19      6     15
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 11(6P25.3) MUTATED        9      4
  DEL PEAK 11(6P25.3) WILD-TYPE     12     18
D36V10, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           6                            18
  CLUS_2                           9                            23
  CLUS_3                          17                            20
  CLUS_4                           5                            19
  CLUS_5                           5                             6
  CLUS_6                           7                            15
  CLUS_7                           9                            12
  CLUS_8                           4                            18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 12(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q14.1) MUTATED       26     11     36      5
  DEL PEAK 12(6Q14.1) WILD-TYPE     44     75     38     21
D37V1, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          26                            44
  CLUS_2                          11                            75
  CLUS_3                          36                            38
  CLUS_4                           5                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED       15      9     21      6     23      1
  DEL PEAK 12(6Q14.1) WILD-TYPE     33     37     40     28     24     14
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q14.1) MUTATED        3
  DEL PEAK 12(6Q14.1) WILD-TYPE      2
D37V2, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          15                            33
  CLUS_2                           9                            37
  CLUS_3                          21                            40
  CLUS_4                           6                            28
  CLUS_5                          23                            24
  CLUS_6                           1                            14
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q14.1) MUTATED       10     39     15
  DEL PEAK 12(6Q14.1) WILD-TYPE     48     61     45
D37V3, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          10                            48
  CLUS_2                          39                            61
  CLUS_3                          15                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED        4      8     21     15      9      7
  DEL PEAK 12(6Q14.1) WILD-TYPE     20     20     18     53     28     15
D37V4, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                           4                            20
  CLUS_2                           8                            20
  CLUS_3                          21                            18
  CLUS_4                          15                            53
  CLUS_5                           9                            28
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q14.1) MUTATED       40     23     15
  DEL PEAK 12(6Q14.1) WILD-TYPE     74     54     48
D37V5, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          40                            74
  CLUS_2                          23                            54
  CLUS_3                          15                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED       14      5     16     10     14      7
  DEL PEAK 12(6Q14.1) WILD-TYPE     32     18     33     36     14     22
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q14.1) MUTATED       12
  DEL PEAK 12(6Q14.1) WILD-TYPE     21
D37V6, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          14                            32
  CLUS_2                           5                            18
  CLUS_3                          16                            33
  CLUS_4                          10                            36
  CLUS_5                          14                            14
  CLUS_6                           7                            22
  CLUS_7                          12                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q14.1) MUTATED       30     18     29
  DEL PEAK 12(6Q14.1) WILD-TYPE     77     32     68
D37V7, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          30                            77
  CLUS_2                          18                            32
  CLUS_3                          29                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q14.1) MUTATED       24     17     31      5
  DEL PEAK 12(6Q14.1) WILD-TYPE     55     35     69     18
D37V8, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          24                            55
  CLUS_2                          17                            35
  CLUS_3                          31                            69
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q14.1) MUTATED       24     22     23
  DEL PEAK 12(6Q14.1) WILD-TYPE     59     42     23
D37V9, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          24                            59
  CLUS_2                          22                            42
  CLUS_3                          23                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED        8     10     14     10      4      9
  DEL PEAK 12(6Q14.1) WILD-TYPE     16     22     23     14      7     13
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 12(6Q14.1) MUTATED        8      6
  DEL PEAK 12(6Q14.1) WILD-TYPE     13     16
D37V10, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                          10                            22
  CLUS_3                          14                            23
  CLUS_4                          10                            14
  CLUS_5                           4                             7
  CLUS_6                           9                            13
  CLUS_7                           8                            13
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 13(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       26      5     32      8
  DEL PEAK 13(7Q36.3) WILD-TYPE     44     81     42     18
D38V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          26                            44
  CLUS_2                           5                            81
  CLUS_3                          32                            42
  CLUS_4                           8                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED       16      8     18      5     21      2
  DEL PEAK 13(7Q36.3) WILD-TYPE     32     38     43     29     26     13
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.3) MUTATED        1
  DEL PEAK 13(7Q36.3) WILD-TYPE      4
D38V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          16                            32
  CLUS_2                           8                            38
  CLUS_3                          18                            43
  CLUS_4                           5                            29
  CLUS_5                          21                            26
  CLUS_6                           2                            13
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       13     32     15
  DEL PEAK 13(7Q36.3) WILD-TYPE     45     68     45
D38V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          13                            45
  CLUS_2                          32                            68
  CLUS_3                          15                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED        5      6     15     17     15      2
  DEL PEAK 13(7Q36.3) WILD-TYPE     19     22     24     51     22     20
D38V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           6                            22
  CLUS_3                          15                            24
  CLUS_4                          17                            51
  CLUS_5                          15                            22
  CLUS_6                           2                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       36     24     11
  DEL PEAK 13(7Q36.3) WILD-TYPE     78     53     52
D38V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          36                            78
  CLUS_2                          24                            53
  CLUS_3                          11                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED       13      4     14      8     13      9
  DEL PEAK 13(7Q36.3) WILD-TYPE     33     19     35     38     15     20
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.3) MUTATED       10
  DEL PEAK 13(7Q36.3) WILD-TYPE     23
D38V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          13                            33
  CLUS_2                           4                            19
  CLUS_3                          14                            35
  CLUS_4                           8                            38
  CLUS_5                          13                            15
  CLUS_6                           9                            20
  CLUS_7                          10                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       23     18     29
  DEL PEAK 13(7Q36.3) WILD-TYPE     84     32     68
D38V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          23                            84
  CLUS_2                          18                            32
  CLUS_3                          29                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       18     20     30      2
  DEL PEAK 13(7Q36.3) WILD-TYPE     61     32     70     21
D38V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          18                            61
  CLUS_2                          20                            32
  CLUS_3                          30                            70
  CLUS_4                           2                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       17     21     16
  DEL PEAK 13(7Q36.3) WILD-TYPE     66     43     30
D38V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          17                            66
  CLUS_2                          21                            43
  CLUS_3                          16                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED        7     10     12      8      3      5
  DEL PEAK 13(7Q36.3) WILD-TYPE     17     22     25     16      8     17
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 13(7Q36.3) MUTATED        7      2
  DEL PEAK 13(7Q36.3) WILD-TYPE     14     20
D38V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          10                            22
  CLUS_3                          12                            25
  CLUS_4                           8                            16
  CLUS_5                           3                             8
  CLUS_6                           5                            17
  CLUS_7                           7                            14
  CLUS_8                           2                            20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       31      9     26     15
  DEL PEAK 14(8P23.3) WILD-TYPE     39     77     48     11
D39V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          31                            39
  CLUS_2                           9                            77
  CLUS_3                          26                            48
  CLUS_4                          15                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       25     10      7     10     25      1
  DEL PEAK 14(8P23.3) WILD-TYPE     23     36     54     24     22     14
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.3) MUTATED        3
  DEL PEAK 14(8P23.3) WILD-TYPE      2
D39V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          25                            23
  CLUS_2                          10                            36
  CLUS_3                           7                            54
  CLUS_4                          10                            24
  CLUS_5                          25                            22
  CLUS_6                           1                            14
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       20     44     10
  DEL PEAK 14(8P23.3) WILD-TYPE     38     56     50
D39V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          20                            38
  CLUS_2                          44                            56
  CLUS_3                          10                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       13      4     21     13     17      6
  DEL PEAK 14(8P23.3) WILD-TYPE     11     24     18     55     20     16
D39V4, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                           4                            24
  CLUS_3                          21                            18
  CLUS_4                          13                            55
  CLUS_5                          17                            20
  CLUS_6                           6                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       51     12     17
  DEL PEAK 14(8P23.3) WILD-TYPE     63     65     46
D39V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          51                            63
  CLUS_2                          12                            65
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       22      8      6     10     13      7
  DEL PEAK 14(8P23.3) WILD-TYPE     24     15     43     36     15     22
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.3) MUTATED       14
  DEL PEAK 14(8P23.3) WILD-TYPE     19
D39V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          22                            24
  CLUS_2                           8                            15
  CLUS_3                           6                            43
  CLUS_4                          10                            36
  CLUS_5                          13                            15
  CLUS_6                           7                            22
  CLUS_7                          14                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       41     20     18
  DEL PEAK 14(8P23.3) WILD-TYPE     66     30     79
D39V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          41                            66
  CLUS_2                          20                            30
  CLUS_3                          18                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       37     18     20      4
  DEL PEAK 14(8P23.3) WILD-TYPE     42     34     80     19
D39V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          37                            42
  CLUS_2                          18                            34
  CLUS_3                          20                            80
  CLUS_4                           4                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       34     12     18
  DEL PEAK 14(8P23.3) WILD-TYPE     49     52     28
D39V9, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          34                            49
  CLUS_2                          12                            52
  CLUS_3                          18                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       10     16      4      8      1     13
  DEL PEAK 14(8P23.3) WILD-TYPE     14     16     33     16     10      9
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 14(8P23.3) MUTATED        7      5
  DEL PEAK 14(8P23.3) WILD-TYPE     14     17
D39V10, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          16                            16
  CLUS_3                           4                            33
  CLUS_4                           8                            16
  CLUS_5                           1                            10
  CLUS_6                          13                             9
  CLUS_7                           7                            14
  CLUS_8                           5                            17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 15(9P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P24.3) MUTATED       20     20     53      7
  DEL PEAK 15(9P24.3) WILD-TYPE     50     66     21     19
D40V1, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          20                            50
  CLUS_2                          20                            66
  CLUS_3                          53                            21
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED       21     17     20     14     22      4
  DEL PEAK 15(9P24.3) WILD-TYPE     27     29     41     20     25     11
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P24.3) MUTATED        2
  DEL PEAK 15(9P24.3) WILD-TYPE      3
D40V2, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          21                            27
  CLUS_2                          17                            29
  CLUS_3                          20                            41
  CLUS_4                          14                            20
  CLUS_5                          22                            25
  CLUS_6                           4                            11
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P24.3) MUTATED       18     50     19
  DEL PEAK 15(9P24.3) WILD-TYPE     40     50     41
D40V3, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          18                            40
  CLUS_2                          50                            50
  CLUS_3                          19                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED        7     13     22     20     15     10
  DEL PEAK 15(9P24.3) WILD-TYPE     17     15     17     48     22     12
D40V4, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          13                            15
  CLUS_3                          22                            17
  CLUS_4                          20                            48
  CLUS_5                          15                            22
  CLUS_6                          10                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P24.3) MUTATED       48     23     27
  DEL PEAK 15(9P24.3) WILD-TYPE     66     54     36
D40V5, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          48                            66
  CLUS_2                          23                            54
  CLUS_3                          27                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED       19      7     16     20     13      7
  DEL PEAK 15(9P24.3) WILD-TYPE     27     16     33     26     15     22
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P24.3) MUTATED       16
  DEL PEAK 15(9P24.3) WILD-TYPE     17
D40V6, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          19                            27
  CLUS_2                           7                            16
  CLUS_3                          16                            33
  CLUS_4                          20                            26
  CLUS_5                          13                            15
  CLUS_6                           7                            22
  CLUS_7                          16                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P24.3) MUTATED       40     26     34
  DEL PEAK 15(9P24.3) WILD-TYPE     67     24     63
D40V7, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          40                            67
  CLUS_2                          26                            24
  CLUS_3                          34                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P24.3) MUTATED       32     26     34      8
  DEL PEAK 15(9P24.3) WILD-TYPE     47     26     66     15
D40V8, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          32                            47
  CLUS_2                          26                            26
  CLUS_3                          34                            66
  CLUS_4                           8                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P24.3) MUTATED       35     20     24
  DEL PEAK 15(9P24.3) WILD-TYPE     48     44     22
D40V9, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          35                            48
  CLUS_2                          20                            44
  CLUS_3                          24                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED       10     13     12     12      3     10
  DEL PEAK 15(9P24.3) WILD-TYPE     14     19     25     12      8     12
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 15(9P24.3) MUTATED        9     10
  DEL PEAK 15(9P24.3) WILD-TYPE     12     12
D40V10, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          13                            19
  CLUS_3                          12                            25
  CLUS_4                          12                            12
  CLUS_5                           3                             8
  CLUS_6                          10                            12
  CLUS_7                           9                            12
  CLUS_8                          10                            12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 16(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       18     25     61     10
  DEL PEAK 16(9P21.3) WILD-TYPE     52     61     13     16
D41V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          18                            52
  CLUS_2                          25                            61
  CLUS_3                          61                            13
  CLUS_4                          10                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       25     22     20     16     26      3
  DEL PEAK 16(9P21.3) WILD-TYPE     23     24     41     18     21     12
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED        2
  DEL PEAK 16(9P21.3) WILD-TYPE      3
D41V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          25                            23
  CLUS_2                          22                            24
  CLUS_3                          20                            41
  CLUS_4                          16                            18
  CLUS_5                          26                            21
  CLUS_6                           3                            12
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       23     61     20
  DEL PEAK 16(9P21.3) WILD-TYPE     35     39     40
D41V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          23                            35
  CLUS_2                          61                            39
  CLUS_3                          20                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED        7     13     28     22     21     13
  DEL PEAK 16(9P21.3) WILD-TYPE     17     15     11     46     16      9
D41V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          13                            15
  CLUS_3                          28                            11
  CLUS_4                          22                            46
  CLUS_5                          21                            16
  CLUS_6                          13                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       58     22     32
  DEL PEAK 16(9P21.3) WILD-TYPE     56     55     31
D41V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          58                            56
  CLUS_2                          22                            55
  CLUS_3                          32                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       24      7     17     24     18      5
  DEL PEAK 16(9P21.3) WILD-TYPE     22     16     32     22     10     24
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED       17
  DEL PEAK 16(9P21.3) WILD-TYPE     16
D41V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          24                            22
  CLUS_2                           7                            16
  CLUS_3                          17                            32
  CLUS_4                          24                            22
  CLUS_5                          18                            10
  CLUS_6                           5                            24
  CLUS_7                          17                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       47     30     36
  DEL PEAK 16(9P21.3) WILD-TYPE     60     20     61
D41V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          47                            60
  CLUS_2                          30                            20
  CLUS_3                          36                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       39     29     36      9
  DEL PEAK 16(9P21.3) WILD-TYPE     40     23     64     14
D41V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          39                            40
  CLUS_2                          29                            23
  CLUS_3                          36                            64
  CLUS_4                           9                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       40     19     33
  DEL PEAK 16(9P21.3) WILD-TYPE     43     45     13
D41V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          40                            43
  CLUS_2                          19                            45
  CLUS_3                          33                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       11     17     10     16      2     10
  DEL PEAK 16(9P21.3) WILD-TYPE     13     15     27      8      9     12
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 16(9P21.3) MUTATED       16     10
  DEL PEAK 16(9P21.3) WILD-TYPE      5     12
D41V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          17                            15
  CLUS_3                          10                            27
  CLUS_4                          16                             8
  CLUS_5                           2                             9
  CLUS_6                          10                            12
  CLUS_7                          16                             5
  CLUS_8                          10                            12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 17(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED       27      6     26      2
  DEL PEAK 17(9Q34.3) WILD-TYPE     43     80     48     24
D42V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          27                            43
  CLUS_2                           6                            80
  CLUS_3                          26                            48
  CLUS_4                           2                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        9      3     24      6     15      2
  DEL PEAK 17(9Q34.3) WILD-TYPE     39     43     37     28     32     13
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.3) MUTATED        2
  DEL PEAK 17(9Q34.3) WILD-TYPE      3
D42V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           9                            39
  CLUS_2                           3                            43
  CLUS_3                          24                            37
  CLUS_4                           6                            28
  CLUS_5                          15                            32
  CLUS_6                           2                            13
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED        9     23     21
  DEL PEAK 17(9Q34.3) WILD-TYPE     49     77     39
D42V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           9                            49
  CLUS_2                          23                            77
  CLUS_3                          21                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        4      2     10     23      9      5
  DEL PEAK 17(9Q34.3) WILD-TYPE     20     26     29     45     28     17
D42V4, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           4                            20
  CLUS_2                           2                            26
  CLUS_3                          10                            29
  CLUS_4                          23                            45
  CLUS_5                           9                            28
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       22     26     12
  DEL PEAK 17(9Q34.3) WILD-TYPE     92     51     51
D42V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          22                            92
  CLUS_2                          26                            51
  CLUS_3                          12                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        7      2     15      9      7     11
  DEL PEAK 17(9Q34.3) WILD-TYPE     39     21     34     37     21     18
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.3) MUTATED        9
  DEL PEAK 17(9Q34.3) WILD-TYPE     24
D42V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           7                            39
  CLUS_2                           2                            21
  CLUS_3                          15                            34
  CLUS_4                           9                            37
  CLUS_5                           7                            21
  CLUS_6                          11                            18
  CLUS_7                           9                            24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       20      6     35
  DEL PEAK 17(9Q34.3) WILD-TYPE     87     44     62
D42V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          20                            87
  CLUS_2                           6                            44
  CLUS_3                          35                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED       13      5     37      6
  DEL PEAK 17(9Q34.3) WILD-TYPE     66     47     63     17
D42V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          13                            66
  CLUS_2                           5                            47
  CLUS_3                          37                            63
  CLUS_4                           6                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       17     22      9
  DEL PEAK 17(9Q34.3) WILD-TYPE     66     42     37
D42V9, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          17                            66
  CLUS_2                          22                            42
  CLUS_3                           9                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        1      5     12      9      5      4
  DEL PEAK 17(9Q34.3) WILD-TYPE     23     27     25     15      6     18
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 17(9Q34.3) MUTATED        5      7
  DEL PEAK 17(9Q34.3) WILD-TYPE     16     15
D42V10, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           1                            23
  CLUS_2                           5                            27
  CLUS_3                          12                            25
  CLUS_4                           9                            15
  CLUS_5                           5                             6
  CLUS_6                           4                            18
  CLUS_7                           5                            16
  CLUS_8                           7                            15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       40     31     45     12
  DEL PEAK 18(10P15.3) WILD-TYPE     30     55     29     14
D43V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           40                             30
  CLUS_2                           31                             55
  CLUS_3                           45                             29
  CLUS_4                           12                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       29     14     39     15     25      3
  DEL PEAK 18(10P15.3) WILD-TYPE     19     32     22     19     22     12
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        3
  DEL PEAK 18(10P15.3) WILD-TYPE      2
D43V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           29                             19
  CLUS_2                           14                             32
  CLUS_3                           39                             22
  CLUS_4                           15                             19
  CLUS_5                           25                             22
  CLUS_6                            3                             12
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       23     51     36
  DEL PEAK 18(10P15.3) WILD-TYPE     35     49     24
D43V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           23                             35
  CLUS_2                           51                             49
  CLUS_3                           36                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       15      5     27     34     16     13
  DEL PEAK 18(10P15.3) WILD-TYPE      9     23     12     34     21      9
D43V4, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                            5                             23
  CLUS_3                           27                             12
  CLUS_4                           34                             34
  CLUS_5                           16                             21
  CLUS_6                           13                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       55     44     28
  DEL PEAK 18(10P15.3) WILD-TYPE     59     33     35
D43V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           55                             59
  CLUS_2                           44                             33
  CLUS_3                           28                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       26      5     34     20     12     11
  DEL PEAK 18(10P15.3) WILD-TYPE     20     18     15     26     16     18
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED       19
  DEL PEAK 18(10P15.3) WILD-TYPE     14
D43V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           26                             20
  CLUS_2                            5                             18
  CLUS_3                           34                             15
  CLUS_4                           20                             26
  CLUS_5                           12                             16
  CLUS_6                           11                             18
  CLUS_7                           19                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       50     22     55
  DEL PEAK 18(10P15.3) WILD-TYPE     57     28     42
D43V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           50                             57
  CLUS_2                           22                             28
  CLUS_3                           55                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       42     19     57      9
  DEL PEAK 18(10P15.3) WILD-TYPE     37     33     43     14
D43V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           42                             37
  CLUS_2                           19                             33
  CLUS_3                           57                             43
  CLUS_4                            9                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       41     36     24
  DEL PEAK 18(10P15.3) WILD-TYPE     42     28     22
D43V9, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           41                             42
  CLUS_2                           36                             28
  CLUS_3                           24                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED        9     16     20     14      8     13
  DEL PEAK 18(10P15.3) WILD-TYPE     15     16     17     10      3      9
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 18(10P15.3) MUTATED       11     10
  DEL PEAK 18(10P15.3) WILD-TYPE     10     12
D43V10, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                           16                             16
  CLUS_3                           20                             17
  CLUS_4                           14                             10
  CLUS_5                            8                              3
  CLUS_6                           13                              9
  CLUS_7                           11                             10
  CLUS_8                           10                             12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 19(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       56     29     47      6
  DEL PEAK 19(10Q23.31) WILD-TYPE     14     57     27     20
D44V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            56                              14
  CLUS_2                            29                              57
  CLUS_3                            47                              27
  CLUS_4                             6                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       28     10     52      8     32      4
  DEL PEAK 19(10Q23.31) WILD-TYPE     20     36      9     26     15     11
                                 vv
clus                              CLUS_7
  DEL PEAK 19(10Q23.31) MUTATED        4
  DEL PEAK 19(10Q23.31) WILD-TYPE      1
D44V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            28                              20
  CLUS_2                            10                              36
  CLUS_3                            52                               9
  CLUS_4                             8                              26
  CLUS_5                            32                              15
  CLUS_6                             4                              11
  CLUS_7                             4                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       18     53     46
  DEL PEAK 19(10Q23.31) WILD-TYPE     40     47     14
D44V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            18                              40
  CLUS_2                            53                              47
  CLUS_3                            46                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       13      5     28     47     18      6
  DEL PEAK 19(10Q23.31) WILD-TYPE     11     23     11     21     19     16
D44V4, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            13                              11
  CLUS_2                             5                              23
  CLUS_3                            28                              11
  CLUS_4                            47                              21
  CLUS_5                            18                              19
  CLUS_6                             6                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       57     61     19
  DEL PEAK 19(10Q23.31) WILD-TYPE     57     16     44
D44V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            57                              57
  CLUS_2                            61                              16
  CLUS_3                            19                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       25      7     46     10     12     15
  DEL PEAK 19(10Q23.31) WILD-TYPE     21     16      3     36     16     14
                                 vv
clus                              CLUS_7
  DEL PEAK 19(10Q23.31) MUTATED       22
  DEL PEAK 19(10Q23.31) WILD-TYPE     11
D44V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            25                              21
  CLUS_2                             7                              16
  CLUS_3                            46                               3
  CLUS_4                            10                              36
  CLUS_5                            12                              16
  CLUS_6                            15                              14
  CLUS_7                            22                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       41     27     69
  DEL PEAK 19(10Q23.31) WILD-TYPE     66     23     28
D44V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            41                              66
  CLUS_2                            27                              23
  CLUS_3                            69                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       38     24     70      5
  DEL PEAK 19(10Q23.31) WILD-TYPE     41     28     30     18
D44V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            38                              41
  CLUS_2                            24                              28
  CLUS_3                            70                              30
  CLUS_4                             5                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       34     47     25
  DEL PEAK 19(10Q23.31) WILD-TYPE     49     17     21
D44V9, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            34                              49
  CLUS_2                            47                              17
  CLUS_3                            25                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       15     12     30     14      7     14
  DEL PEAK 19(10Q23.31) WILD-TYPE      9     20      7     10      4      8
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 19(10Q23.31) MUTATED        9      5
  DEL PEAK 19(10Q23.31) WILD-TYPE     12     17
D44V10, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            15                               9
  CLUS_2                            12                              20
  CLUS_3                            30                               7
  CLUS_4                            14                              10
  CLUS_5                             7                               4
  CLUS_6                            14                               8
  CLUS_7                             9                              12
  CLUS_8                             5                              17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 20(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       53     30     43      6
  DEL PEAK 20(10Q26.3) WILD-TYPE     17     56     31     20
D45V1, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           53                             17
  CLUS_2                           30                             56
  CLUS_3                           43                             31
  CLUS_4                            6                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       25     10     50      6     33      4
  DEL PEAK 20(10Q26.3) WILD-TYPE     23     36     11     28     14     11
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        4
  DEL PEAK 20(10Q26.3) WILD-TYPE      1
D45V2, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           25                             23
  CLUS_2                           10                             36
  CLUS_3                           50                             11
  CLUS_4                            6                             28
  CLUS_5                           33                             14
  CLUS_6                            4                             11
  CLUS_7                            4                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       16     52     45
  DEL PEAK 20(10Q26.3) WILD-TYPE     42     48     15
D45V3, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             42
  CLUS_2                           52                             48
  CLUS_3                           45                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       13      5     28     46     15      6
  DEL PEAK 20(10Q26.3) WILD-TYPE     11     23     11     22     22     16
D45V4, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            5                             23
  CLUS_3                           28                             11
  CLUS_4                           46                             22
  CLUS_5                           15                             22
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       54     57     19
  DEL PEAK 20(10Q26.3) WILD-TYPE     60     20     44
D45V5, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           54                             60
  CLUS_2                           57                             20
  CLUS_3                           19                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       21      7     41      9     15     16
  DEL PEAK 20(10Q26.3) WILD-TYPE     25     16      8     37     13     13
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED       21
  DEL PEAK 20(10Q26.3) WILD-TYPE     12
D45V6, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           21                             25
  CLUS_2                            7                             16
  CLUS_3                           41                              8
  CLUS_4                            9                             37
  CLUS_5                           15                             13
  CLUS_6                           16                             13
  CLUS_7                           21                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       38     28     64
  DEL PEAK 20(10Q26.3) WILD-TYPE     69     22     33
D45V7, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           38                             69
  CLUS_2                           28                             22
  CLUS_3                           64                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       37     23     66      4
  DEL PEAK 20(10Q26.3) WILD-TYPE     42     29     34     19
D45V8, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           37                             42
  CLUS_2                           23                             29
  CLUS_3                           66                             34
  CLUS_4                            4                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       31     47     25
  DEL PEAK 20(10Q26.3) WILD-TYPE     52     17     21
D45V9, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           31                             52
  CLUS_2                           47                             17
  CLUS_3                           25                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       14     10     29     13      8     14
  DEL PEAK 20(10Q26.3) WILD-TYPE     10     22      8     11      3      8
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 20(10Q26.3) MUTATED       10      5
  DEL PEAK 20(10Q26.3) WILD-TYPE     11     17
D45V10, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           10                             22
  CLUS_3                           29                              8
  CLUS_4                           13                             11
  CLUS_5                            8                              3
  CLUS_6                           14                              8
  CLUS_7                           10                             11
  CLUS_8                            5                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 21(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       40      9     47     14
  DEL PEAK 21(11P15.5) WILD-TYPE     30     77     27     12
D46V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           40                             30
  CLUS_2                            9                             77
  CLUS_3                           47                             27
  CLUS_4                           14                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       30     12     30     10     23      2
  DEL PEAK 21(11P15.5) WILD-TYPE     18     34     31     24     24     13
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        3
  DEL PEAK 21(11P15.5) WILD-TYPE      2
D46V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           30                             18
  CLUS_2                           12                             34
  CLUS_3                           30                             31
  CLUS_4                           10                             24
  CLUS_5                           23                             24
  CLUS_6                            2                             13
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       24     44     29
  DEL PEAK 21(11P15.5) WILD-TYPE     34     56     31
D46V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           24                             34
  CLUS_2                           44                             56
  CLUS_3                           29                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       19      7     17     29     16      9
  DEL PEAK 21(11P15.5) WILD-TYPE      5     21     22     39     21     13
D46V4, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           19                              5
  CLUS_2                            7                             21
  CLUS_3                           17                             22
  CLUS_4                           29                             39
  CLUS_5                           16                             21
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       51     36     23
  DEL PEAK 21(11P15.5) WILD-TYPE     63     41     40
D46V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           51                             63
  CLUS_2                           36                             41
  CLUS_3                           23                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       26      7     25     18     11     11
  DEL PEAK 21(11P15.5) WILD-TYPE     20     16     24     28     17     18
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED       12
  DEL PEAK 21(11P15.5) WILD-TYPE     21
D46V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           26                             20
  CLUS_2                            7                             16
  CLUS_3                           25                             24
  CLUS_4                           18                             28
  CLUS_5                           11                             17
  CLUS_6                           11                             18
  CLUS_7                           12                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       42     24     42
  DEL PEAK 21(11P15.5) WILD-TYPE     65     26     55
D46V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           42                             65
  CLUS_2                           24                             26
  CLUS_3                           42                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       34     24     42      8
  DEL PEAK 21(11P15.5) WILD-TYPE     45     28     58     15
D46V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           34                             45
  CLUS_2                           24                             28
  CLUS_3                           42                             58
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       37     32     21
  DEL PEAK 21(11P15.5) WILD-TYPE     46     32     25
D46V9, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           37                             46
  CLUS_2                           32                             32
  CLUS_3                           21                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       14     15     19     12      3     11
  DEL PEAK 21(11P15.5) WILD-TYPE     10     17     18     12      8     11
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 21(11P15.5) MUTATED        7      9
  DEL PEAK 21(11P15.5) WILD-TYPE     14     13
D46V10, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           15                             17
  CLUS_3                           19                             18
  CLUS_4                           12                             12
  CLUS_5                            3                              8
  CLUS_6                           11                             11
  CLUS_7                            7                             14
  CLUS_8                            9                             13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 22(11Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q24.2) MUTATED       48     14     42     19
  DEL PEAK 22(11Q24.2) WILD-TYPE     22     72     32      7
D47V1, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           48                             22
  CLUS_2                           14                             72
  CLUS_3                           42                             32
  CLUS_4                           19                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q24.2) MUTATED       39     16     23     11     28      2
  DEL PEAK 22(11Q24.2) WILD-TYPE      9     30     38     23     19     13
                                vv
clus                             CLUS_7
  DEL PEAK 22(11Q24.2) MUTATED        4
  DEL PEAK 22(11Q24.2) WILD-TYPE      1
D47V2, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           39                              9
  CLUS_2                           16                             30
  CLUS_3                           23                             38
  CLUS_4                           11                             23
  CLUS_5                           28                             19
  CLUS_6                            2                             13
  CLUS_7                            4                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q24.2) MUTATED       29     58     21
  DEL PEAK 22(11Q24.2) WILD-TYPE     29     42     39
D47V3, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           29                             29
  CLUS_2                           58                             42
  CLUS_3                           21                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q24.2) MUTATED       18     13     22     21     26      8
  DEL PEAK 22(11Q24.2) WILD-TYPE      6     15     17     47     11     14
D47V4, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           18                              6
  CLUS_2                           13                             15
  CLUS_3                           22                             17
  CLUS_4                           21                             47
  CLUS_5                           26                             11
  CLUS_6                            8                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q24.2) MUTATED       69     29     24
  DEL PEAK 22(11Q24.2) WILD-TYPE     45     48     39
D47V5, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           69                             45
  CLUS_2                           29                             48
  CLUS_3                           24                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q24.2) MUTATED       35     12     19     20     12      9
  DEL PEAK 22(11Q24.2) WILD-TYPE     11     11     30     26     16     20
                                vv
clus                             CLUS_7
  DEL PEAK 22(11Q24.2) MUTATED       15
  DEL PEAK 22(11Q24.2) WILD-TYPE     18
D47V6, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           35                             11
  CLUS_2                           12                             11
  CLUS_3                           19                             30
  CLUS_4                           20                             26
  CLUS_5                           12                             16
  CLUS_6                            9                             20
  CLUS_7                           15                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q24.2) MUTATED       56     28     37
  DEL PEAK 22(11Q24.2) WILD-TYPE     51     22     60
D47V7, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           56                             51
  CLUS_2                           28                             22
  CLUS_3                           37                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q24.2) MUTATED       47     27     40      7
  DEL PEAK 22(11Q24.2) WILD-TYPE     32     25     60     16
D47V8, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           47                             32
  CLUS_2                           27                             25
  CLUS_3                           40                             60
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q24.2) MUTATED       48     30     27
  DEL PEAK 22(11Q24.2) WILD-TYPE     35     34     19
D47V9, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           48                             35
  CLUS_2                           30                             34
  CLUS_3                           27                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q24.2) MUTATED       16     23     15     17      3     13
  DEL PEAK 22(11Q24.2) WILD-TYPE      8      9     22      7      8      9
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(11Q24.2) MUTATED        9      9
  DEL PEAK 22(11Q24.2) WILD-TYPE     12     13
D47V10, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           16                              8
  CLUS_2                           23                              9
  CLUS_3                           15                             22
  CLUS_4                           17                              7
  CLUS_5                            3                              8
  CLUS_6                           13                              9
  CLUS_7                            9                             12
  CLUS_8                            9                             13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 23(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12P13.1) MUTATED       32     13     30     12
  DEL PEAK 23(12P13.1) WILD-TYPE     38     73     44     14
D48V1, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           32                             38
  CLUS_2                           13                             73
  CLUS_3                           30                             44
  CLUS_4                           12                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12P13.1) MUTATED       26     10     19      6     22      3
  DEL PEAK 23(12P13.1) WILD-TYPE     22     36     42     28     25     12
                                vv
clus                             CLUS_7
  DEL PEAK 23(12P13.1) MUTATED        1
  DEL PEAK 23(12P13.1) WILD-TYPE      4
D48V2, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           26                             22
  CLUS_2                           10                             36
  CLUS_3                           19                             42
  CLUS_4                            6                             28
  CLUS_5                           22                             25
  CLUS_6                            3                             12
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12P13.1) MUTATED       20     41     18
  DEL PEAK 23(12P13.1) WILD-TYPE     38     59     42
D48V3, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           20                             38
  CLUS_2                           41                             59
  CLUS_3                           18                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12P13.1) MUTATED       12      9     16     20     17      5
  DEL PEAK 23(12P13.1) WILD-TYPE     12     19     23     48     20     17
D48V4, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                            9                             19
  CLUS_3                           16                             23
  CLUS_4                           20                             48
  CLUS_5                           17                             20
  CLUS_6                            5                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12P13.1) MUTATED       49     23     13
  DEL PEAK 23(12P13.1) WILD-TYPE     65     54     50
D48V5, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           49                             65
  CLUS_2                           23                             54
  CLUS_3                           13                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12P13.1) MUTATED       26      8     14      8     10      9
  DEL PEAK 23(12P13.1) WILD-TYPE     20     15     35     38     18     20
                                vv
clus                             CLUS_7
  DEL PEAK 23(12P13.1) MUTATED       10
  DEL PEAK 23(12P13.1) WILD-TYPE     23
D48V6, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           26                             20
  CLUS_2                            8                             15
  CLUS_3                           14                             35
  CLUS_4                            8                             38
  CLUS_5                           10                             18
  CLUS_6                            9                             20
  CLUS_7                           10                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12P13.1) MUTATED       37     22     27
  DEL PEAK 23(12P13.1) WILD-TYPE     70     28     70
D48V7, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           37                             70
  CLUS_2                           22                             28
  CLUS_3                           27                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12P13.1) MUTATED       35     18     29      4
  DEL PEAK 23(12P13.1) WILD-TYPE     44     34     71     19
D48V8, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           35                             44
  CLUS_2                           18                             34
  CLUS_3                           29                             71
  CLUS_4                            4                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12P13.1) MUTATED       28     18     20
  DEL PEAK 23(12P13.1) WILD-TYPE     55     46     26
D48V9, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           28                             55
  CLUS_2                           18                             46
  CLUS_3                           20                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12P13.1) MUTATED       12     14     10      7      3      9
  DEL PEAK 23(12P13.1) WILD-TYPE     12     18     27     17      8     13
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 23(12P13.1) MUTATED        7      4
  DEL PEAK 23(12P13.1) WILD-TYPE     14     18
D48V10, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           14                             18
  CLUS_3                           10                             27
  CLUS_4                            7                             17
  CLUS_5                            3                              8
  CLUS_6                            9                             13
  CLUS_7                            7                             14
  CLUS_8                            4                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 24(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q12) MUTATED       26      5     18      7
  DEL PEAK 24(12Q12) WILD-TYPE     44     81     56     19
D49V1, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         26                           44
  CLUS_2                          5                           81
  CLUS_3                         18                           56
  CLUS_4                          7                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(12Q12) MUTATED       13      5     21      2     14      1      0
  DEL PEAK 24(12Q12) WILD-TYPE     35     41     40     32     33     14      5
D49V2, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         13                           35
  CLUS_2                          5                           41
  CLUS_3                         21                           40
  CLUS_4                          2                           32
  CLUS_5                         14                           33
  CLUS_6                          1                           14
  CLUS_7                          0                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q12) MUTATED        7     24     14
  DEL PEAK 24(12Q12) WILD-TYPE     51     76     46
D49V3, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                          7                           51
  CLUS_2                         24                           76
  CLUS_3                         14                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12Q12) MUTATED        4      3     10     14     11      3
  DEL PEAK 24(12Q12) WILD-TYPE     20     25     29     54     26     19
D49V4, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                          4                           20
  CLUS_2                          3                           25
  CLUS_3                         10                           29
  CLUS_4                         14                           54
  CLUS_5                         11                           26
  CLUS_6                          3                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q12) MUTATED       25     23      8
  DEL PEAK 24(12Q12) WILD-TYPE     89     54     55
D49V5, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         25                           89
  CLUS_2                         23                           54
  CLUS_3                          8                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(12Q12) MUTATED       13      3     17      3      7      5      8
  DEL PEAK 24(12Q12) WILD-TYPE     33     20     32     43     21     24     25
D49V6, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         13                           33
  CLUS_2                          3                           20
  CLUS_3                         17                           32
  CLUS_4                          3                           43
  CLUS_5                          7                           21
  CLUS_6                          5                           24
  CLUS_7                          8                           25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q12) MUTATED       16     15     25
  DEL PEAK 24(12Q12) WILD-TYPE     91     35     72
D49V7, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         16                           91
  CLUS_2                         15                           35
  CLUS_3                         25                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q12) MUTATED       17     12     25      2
  DEL PEAK 24(12Q12) WILD-TYPE     62     40     75     21
D49V8, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         17                           62
  CLUS_2                         12                           40
  CLUS_3                         25                           75
  CLUS_4                          2                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q12) MUTATED       14     20     10
  DEL PEAK 24(12Q12) WILD-TYPE     69     44     36
D49V9, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         14                           69
  CLUS_2                         20                           44
  CLUS_3                         10                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(12Q12) MUTATED        6      6     14      4      3      4      5
  DEL PEAK 24(12Q12) WILD-TYPE     18     26     23     20      8     18     16
                              vv
clus                           CLUS_8
  DEL PEAK 24(12Q12) MUTATED        2
  DEL PEAK 24(12Q12) WILD-TYPE     20
D49V10, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                          6                           18
  CLUS_2                          6                           26
  CLUS_3                         14                           23
  CLUS_4                          4                           20
  CLUS_5                          3                            8
  CLUS_6                          4                           18
  CLUS_7                          5                           16
  CLUS_8                          2                           20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 25(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.33) MUTATED       29      6     26      8
  DEL PEAK 25(12Q24.33) WILD-TYPE     41     80     48     18
D50V1, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            29                              41
  CLUS_2                             6                              80
  CLUS_3                            26                              48
  CLUS_4                             8                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED       17      6     23      7     15      1
  DEL PEAK 25(12Q24.33) WILD-TYPE     31     40     38     27     32     14
                                 vv
clus                              CLUS_7
  DEL PEAK 25(12Q24.33) MUTATED        0
  DEL PEAK 25(12Q24.33) WILD-TYPE      5
D50V2, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            17                              31
  CLUS_2                             6                              40
  CLUS_3                            23                              38
  CLUS_4                             7                              27
  CLUS_5                            15                              32
  CLUS_6                             1                              14
  CLUS_7                             0                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       14     30     18
  DEL PEAK 25(12Q24.33) WILD-TYPE     44     70     42
D50V3, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            14                              44
  CLUS_2                            30                              70
  CLUS_3                            18                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED        8      3     14     18     13      6
  DEL PEAK 25(12Q24.33) WILD-TYPE     16     25     25     50     24     16
D50V4, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                             8                              16
  CLUS_2                             3                              25
  CLUS_3                            14                              25
  CLUS_4                            18                              50
  CLUS_5                            13                              24
  CLUS_6                             6                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       30     24     15
  DEL PEAK 25(12Q24.33) WILD-TYPE     84     53     48
D50V5, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            30                              84
  CLUS_2                            24                              53
  CLUS_3                            15                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED       17      3     21      9      8      3
  DEL PEAK 25(12Q24.33) WILD-TYPE     29     20     28     37     20     26
                                 vv
clus                              CLUS_7
  DEL PEAK 25(12Q24.33) MUTATED        8
  DEL PEAK 25(12Q24.33) WILD-TYPE     25
D50V6, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            17                              29
  CLUS_2                             3                              20
  CLUS_3                            21                              28
  CLUS_4                             9                              37
  CLUS_5                             8                              20
  CLUS_6                             3                              26
  CLUS_7                             8                              25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       28     11     30
  DEL PEAK 25(12Q24.33) WILD-TYPE     79     39     67
D50V7, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            28                              79
  CLUS_2                            11                              39
  CLUS_3                            30                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.33) MUTATED       24      8     32      5
  DEL PEAK 25(12Q24.33) WILD-TYPE     55     44     68     18
D50V8, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            24                              55
  CLUS_2                             8                              44
  CLUS_3                            32                              68
  CLUS_4                             5                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       25     22      8
  DEL PEAK 25(12Q24.33) WILD-TYPE     58     42     38
D50V9, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            25                              58
  CLUS_2                            22                              42
  CLUS_3                             8                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED        6     11     13      5      4      8
  DEL PEAK 25(12Q24.33) WILD-TYPE     18     21     24     19      7     14
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 25(12Q24.33) MUTATED        2      6
  DEL PEAK 25(12Q24.33) WILD-TYPE     19     16
D50V10, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                             6                              18
  CLUS_2                            11                              21
  CLUS_3                            13                              24
  CLUS_4                             5                              19
  CLUS_5                             4                               7
  CLUS_6                             8                              14
  CLUS_7                             2                              19
  CLUS_8                             6                              16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 26(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.2) MUTATED       67     36     63     14
  DEL PEAK 26(13Q14.2) WILD-TYPE      3     50     11     12
D51V1, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           36                             50
  CLUS_3                           63                             11
  CLUS_4                           14                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       36     23     59     13     38      6
  DEL PEAK 26(13Q14.2) WILD-TYPE     12     23      2     21      9      9
                                vv
clus                             CLUS_7
  DEL PEAK 26(13Q14.2) MUTATED        5
  DEL PEAK 26(13Q14.2) WILD-TYPE      0
D51V2, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           36                             12
  CLUS_2                           23                             23
  CLUS_3                           59                              2
  CLUS_4                           13                             21
  CLUS_5                           38                              9
  CLUS_6                            6                              9
  CLUS_7                            5                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       27     73     53
  DEL PEAK 26(13Q14.2) WILD-TYPE     31     27      7
D51V3, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           27                             31
  CLUS_2                           73                             27
  CLUS_3                           53                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       15     14     31     55     29      9
  DEL PEAK 26(13Q14.2) WILD-TYPE      9     14      8     13      8     13
D51V4, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                           14                             14
  CLUS_3                           31                              8
  CLUS_4                           55                             13
  CLUS_5                           29                              8
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       80     69     29
  DEL PEAK 26(13Q14.2) WILD-TYPE     34      8     34
D51V5, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           80                             34
  CLUS_2                           69                              8
  CLUS_3                           29                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       33     12     47     19     21     22
  DEL PEAK 26(13Q14.2) WILD-TYPE     13     11      2     27      7      7
                                vv
clus                             CLUS_7
  DEL PEAK 26(13Q14.2) MUTATED       24
  DEL PEAK 26(13Q14.2) WILD-TYPE      9
D51V6, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           33                             13
  CLUS_2                           12                             11
  CLUS_3                           47                              2
  CLUS_4                           19                             27
  CLUS_5                           21                              7
  CLUS_6                           22                              7
  CLUS_7                           24                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       61     33     84
  DEL PEAK 26(13Q14.2) WILD-TYPE     46     17     13
D51V7, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           61                             46
  CLUS_2                           33                             17
  CLUS_3                           84                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.2) MUTATED       53     32     85      8
  DEL PEAK 26(13Q14.2) WILD-TYPE     26     20     15     15
D51V8, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           53                             26
  CLUS_2                           32                             20
  CLUS_3                           85                             15
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       49     56     36
  DEL PEAK 26(13Q14.2) WILD-TYPE     34      8     10
D51V9, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           49                             34
  CLUS_2                           56                              8
  CLUS_3                           36                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       17     21     36     20      7     16
  DEL PEAK 26(13Q14.2) WILD-TYPE      7     11      1      4      4      6
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 26(13Q14.2) MUTATED       15      9
  DEL PEAK 26(13Q14.2) WILD-TYPE      6     13
D51V10, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           17                              7
  CLUS_2                           21                             11
  CLUS_3                           36                              1
  CLUS_4                           20                              4
  CLUS_5                            7                              4
  CLUS_6                           16                              6
  CLUS_7                           15                              6
  CLUS_8                            9                             13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 27(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(14Q24.1) MUTATED       29     17     25      9
  DEL PEAK 27(14Q24.1) WILD-TYPE     41     69     49     17
D52V1, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           29                             41
  CLUS_2                           17                             69
  CLUS_3                           25                             49
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED       23      7     19      7     15      7
  DEL PEAK 27(14Q24.1) WILD-TYPE     25     39     42     27     32      8
                                vv
clus                             CLUS_7
  DEL PEAK 27(14Q24.1) MUTATED        2
  DEL PEAK 27(14Q24.1) WILD-TYPE      3
D52V2, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           23                             25
  CLUS_2                            7                             39
  CLUS_3                           19                             42
  CLUS_4                            7                             27
  CLUS_5                           15                             32
  CLUS_6                            7                              8
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       18     30     24
  DEL PEAK 27(14Q24.1) WILD-TYPE     40     70     36
D52V3, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           18                             40
  CLUS_2                           30                             70
  CLUS_3                           24                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED       10      8      9     24     14      7
  DEL PEAK 27(14Q24.1) WILD-TYPE     14     20     30     44     23     15
D52V4, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            8                             20
  CLUS_3                            9                             30
  CLUS_4                           24                             44
  CLUS_5                           14                             23
  CLUS_6                            7                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       34     30     16
  DEL PEAK 27(14Q24.1) WILD-TYPE     80     47     47
D52V5, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           34                             80
  CLUS_2                           30                             47
  CLUS_3                           16                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED       21      5      9     11      2     21
  DEL PEAK 27(14Q24.1) WILD-TYPE     25     18     40     35     26      8
                                vv
clus                             CLUS_7
  DEL PEAK 27(14Q24.1) MUTATED       11
  DEL PEAK 27(14Q24.1) WILD-TYPE     22
D52V6, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           21                             25
  CLUS_2                            5                             18
  CLUS_3                            9                             40
  CLUS_4                           11                             35
  CLUS_5                            2                             26
  CLUS_6                           21                              8
  CLUS_7                           11                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       25     17     38
  DEL PEAK 27(14Q24.1) WILD-TYPE     82     33     59
D52V7, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           25                             82
  CLUS_2                           17                             33
  CLUS_3                           38                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(14Q24.1) MUTATED       22     16     40      2
  DEL PEAK 27(14Q24.1) WILD-TYPE     57     36     60     21
D52V8, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           22                             57
  CLUS_2                           16                             36
  CLUS_3                           40                             60
  CLUS_4                            2                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       22     26     14
  DEL PEAK 27(14Q24.1) WILD-TYPE     61     38     32
D52V9, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           22                             61
  CLUS_2                           26                             38
  CLUS_3                           14                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED       13     11     12     10      5      5
  DEL PEAK 27(14Q24.1) WILD-TYPE     11     21     25     14      6     17
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 27(14Q24.1) MUTATED        4      2
  DEL PEAK 27(14Q24.1) WILD-TYPE     17     20
D52V10, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                           11                             21
  CLUS_3                           12                             25
  CLUS_4                           10                             14
  CLUS_5                            5                              6
  CLUS_6                            5                             17
  CLUS_7                            4                             17
  CLUS_8                            2                             20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 28(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q11.2) MUTATED       48     28     44     10
  DEL PEAK 28(16Q11.2) WILD-TYPE     22     58     30     16
D53V1, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           48                             22
  CLUS_2                           28                             58
  CLUS_3                           44                             30
  CLUS_4                           10                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q11.2) MUTATED       23     16     43      9     31      6
  DEL PEAK 28(16Q11.2) WILD-TYPE     25     30     18     25     16      9
                                vv
clus                             CLUS_7
  DEL PEAK 28(16Q11.2) MUTATED        2
  DEL PEAK 28(16Q11.2) WILD-TYPE      3
D53V2, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           23                             25
  CLUS_2                           16                             30
  CLUS_3                           43                             18
  CLUS_4                            9                             25
  CLUS_5                           31                             16
  CLUS_6                            6                              9
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q11.2) MUTATED       20     51     38
  DEL PEAK 28(16Q11.2) WILD-TYPE     38     49     22
D53V3, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           20                             38
  CLUS_2                           51                             49
  CLUS_3                           38                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q11.2) MUTATED       13      7     27     39     16      7
  DEL PEAK 28(16Q11.2) WILD-TYPE     11     21     12     29     21     15
D53V4, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            7                             21
  CLUS_3                           27                             12
  CLUS_4                           39                             29
  CLUS_5                           16                             21
  CLUS_6                            7                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q11.2) MUTATED       59     50     20
  DEL PEAK 28(16Q11.2) WILD-TYPE     55     27     43
D53V5, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           59                             55
  CLUS_2                           50                             27
  CLUS_3                           20                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q11.2) MUTATED       24      8     34     10     17     17
  DEL PEAK 28(16Q11.2) WILD-TYPE     22     15     15     36     11     12
                                vv
clus                             CLUS_7
  DEL PEAK 28(16Q11.2) MUTATED       19
  DEL PEAK 28(16Q11.2) WILD-TYPE     14
D53V6, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           24                             22
  CLUS_2                            8                             15
  CLUS_3                           34                             15
  CLUS_4                           10                             36
  CLUS_5                           17                             11
  CLUS_6                           17                             12
  CLUS_7                           19                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q11.2) MUTATED       41     28     60
  DEL PEAK 28(16Q11.2) WILD-TYPE     66     22     37
D53V7, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           41                             66
  CLUS_2                           28                             22
  CLUS_3                           60                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q11.2) MUTATED       37     22     63      7
  DEL PEAK 28(16Q11.2) WILD-TYPE     42     30     37     16
D53V8, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           37                             42
  CLUS_2                           22                             30
  CLUS_3                           63                             37
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q11.2) MUTATED       30     47     30
  DEL PEAK 28(16Q11.2) WILD-TYPE     53     17     16
D53V9, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           30                             53
  CLUS_2                           47                             17
  CLUS_3                           30                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q11.2) MUTATED       12     10     31     15      7     13
  DEL PEAK 28(16Q11.2) WILD-TYPE     12     22      6      9      4      9
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 28(16Q11.2) MUTATED       14      5
  DEL PEAK 28(16Q11.2) WILD-TYPE      7     17
D53V10, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           10                             22
  CLUS_3                           31                              6
  CLUS_4                           15                              9
  CLUS_5                            7                              4
  CLUS_6                           13                              9
  CLUS_7                           14                              7
  CLUS_8                            5                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 29(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q23.1) MUTATED       49     29     46     10
  DEL PEAK 29(16Q23.1) WILD-TYPE     21     57     28     16
D54V1, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           49                             21
  CLUS_2                           29                             57
  CLUS_3                           46                             28
  CLUS_4                           10                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED       27     17     43     10     29      6
  DEL PEAK 29(16Q23.1) WILD-TYPE     21     29     18     24     18      9
                                vv
clus                             CLUS_7
  DEL PEAK 29(16Q23.1) MUTATED        2
  DEL PEAK 29(16Q23.1) WILD-TYPE      3
D54V2, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           27                             21
  CLUS_2                           17                             29
  CLUS_3                           43                             18
  CLUS_4                           10                             24
  CLUS_5                           29                             18
  CLUS_6                            6                              9
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       20     55     40
  DEL PEAK 29(16Q23.1) WILD-TYPE     38     45     20
D54V3, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           20                             38
  CLUS_2                           55                             45
  CLUS_3                           40                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED       13     10     24     40     20      8
  DEL PEAK 29(16Q23.1) WILD-TYPE     11     18     15     28     17     14
D54V4, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                           10                             18
  CLUS_3                           24                             15
  CLUS_4                           40                             28
  CLUS_5                           20                             17
  CLUS_6                            8                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       60     51     22
  DEL PEAK 29(16Q23.1) WILD-TYPE     54     26     41
D54V5, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           60                             54
  CLUS_2                           51                             26
  CLUS_3                           22                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED       28      8     34     12     17     17
  DEL PEAK 29(16Q23.1) WILD-TYPE     18     15     15     34     11     12
                                vv
clus                             CLUS_7
  DEL PEAK 29(16Q23.1) MUTATED       17
  DEL PEAK 29(16Q23.1) WILD-TYPE     16
D54V6, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           28                             18
  CLUS_2                            8                             15
  CLUS_3                           34                             15
  CLUS_4                           12                             34
  CLUS_5                           17                             11
  CLUS_6                           17                             12
  CLUS_7                           17                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       43     29     61
  DEL PEAK 29(16Q23.1) WILD-TYPE     64     21     36
D54V7, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           43                             64
  CLUS_2                           29                             21
  CLUS_3                           61                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q23.1) MUTATED       38     24     64      7
  DEL PEAK 29(16Q23.1) WILD-TYPE     41     28     36     16
D54V8, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           38                             41
  CLUS_2                           24                             28
  CLUS_3                           64                             36
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       30     47     32
  DEL PEAK 29(16Q23.1) WILD-TYPE     53     17     14
D54V9, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           30                             53
  CLUS_2                           47                             17
  CLUS_3                           32                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED       14     10     30     16      8     10
  DEL PEAK 29(16Q23.1) WILD-TYPE     10     22      7      8      3     12
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 29(16Q23.1) MUTATED       15      6
  DEL PEAK 29(16Q23.1) WILD-TYPE      6     16
D54V10, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           10                             22
  CLUS_3                           30                              7
  CLUS_4                           16                              8
  CLUS_5                            8                              3
  CLUS_6                           10                             12
  CLUS_7                           15                              6
  CLUS_8                            6                             16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 30(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17P13.1) MUTATED       48     34     40      7
  DEL PEAK 30(17P13.1) WILD-TYPE     22     52     34     19
D55V1, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           48                             22
  CLUS_2                           34                             52
  CLUS_3                           40                             34
  CLUS_4                            7                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED       18     18     50     12     25      4
  DEL PEAK 30(17P13.1) WILD-TYPE     30     28     11     22     22     11
                                vv
clus                             CLUS_7
  DEL PEAK 30(17P13.1) MUTATED        2
  DEL PEAK 30(17P13.1) WILD-TYPE      3
D55V2, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           18                             30
  CLUS_2                           18                             28
  CLUS_3                           50                             11
  CLUS_4                           12                             22
  CLUS_5                           25                             22
  CLUS_6                            4                             11
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED       21     48     39
  DEL PEAK 30(17P13.1) WILD-TYPE     37     52     21
D55V3, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           21                             37
  CLUS_2                           48                             52
  CLUS_3                           39                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED       10      8     28     41     12      9
  DEL PEAK 30(17P13.1) WILD-TYPE     14     20     11     27     25     13
D55V4, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            8                             20
  CLUS_3                           28                             11
  CLUS_4                           41                             27
  CLUS_5                           12                             25
  CLUS_6                            9                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED       51     55     21
  DEL PEAK 30(17P13.1) WILD-TYPE     63     22     42
D55V5, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           51                             63
  CLUS_2                           55                             22
  CLUS_3                           21                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED       18      9     40     16     16     14
  DEL PEAK 30(17P13.1) WILD-TYPE     28     14      9     30     12     15
                                vv
clus                             CLUS_7
  DEL PEAK 30(17P13.1) MUTATED       14
  DEL PEAK 30(17P13.1) WILD-TYPE     19
D55V6, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           18                             28
  CLUS_2                            9                             14
  CLUS_3                           40                              9
  CLUS_4                           16                             30
  CLUS_5                           16                             12
  CLUS_6                           14                             15
  CLUS_7                           14                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED       38     27     62
  DEL PEAK 30(17P13.1) WILD-TYPE     69     23     35
D55V7, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           38                             69
  CLUS_2                           27                             23
  CLUS_3                           62                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17P13.1) MUTATED       28     27     64      8
  DEL PEAK 30(17P13.1) WILD-TYPE     51     25     36     15
D55V8, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           28                             51
  CLUS_2                           27                             25
  CLUS_3                           64                             36
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED       27     44     29
  DEL PEAK 30(17P13.1) WILD-TYPE     56     20     17
D55V9, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           27                             56
  CLUS_2                           44                             20
  CLUS_3                           29                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED       12      8     30     14      6     10
  DEL PEAK 30(17P13.1) WILD-TYPE     12     24      7     10      5     12
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 30(17P13.1) MUTATED       12      8
  DEL PEAK 30(17P13.1) WILD-TYPE      9     14
D55V10, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                            8                             24
  CLUS_3                           30                              7
  CLUS_4                           14                             10
  CLUS_5                            6                              5
  CLUS_6                           10                             12
  CLUS_7                           12                              9
  CLUS_8                            8                             14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 31(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17Q11.2) MUTATED       28      7     37      9
  DEL PEAK 31(17Q11.2) WILD-TYPE     42     79     37     17
D56V1, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           28                             42
  CLUS_2                            7                             79
  CLUS_3                           37                             37
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED       25     11      9      9     25      0
  DEL PEAK 31(17Q11.2) WILD-TYPE     23     35     52     25     22     15
                                vv
clus                             CLUS_7
  DEL PEAK 31(17Q11.2) MUTATED        2
  DEL PEAK 31(17Q11.2) WILD-TYPE      3
D56V2, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           25                             23
  CLUS_2                           11                             35
  CLUS_3                            9                             52
  CLUS_4                            9                             25
  CLUS_5                           25                             22
  CLUS_6                            0                             15
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       21     45      9
  DEL PEAK 31(17Q11.2) WILD-TYPE     37     55     51
D56V3, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           21                             37
  CLUS_2                           45                             55
  CLUS_3                            9                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED       12      4     26      9     18      6
  DEL PEAK 31(17Q11.2) WILD-TYPE     12     24     13     59     19     16
D56V4, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                            4                             24
  CLUS_3                           26                             13
  CLUS_4                            9                             59
  CLUS_5                           18                             19
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       53     10     18
  DEL PEAK 31(17Q11.2) WILD-TYPE     61     67     45
D56V5, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           53                             61
  CLUS_2                           10                             67
  CLUS_3                           18                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED       23      8      7     12     14      3
  DEL PEAK 31(17Q11.2) WILD-TYPE     23     15     42     34     14     26
                                vv
clus                             CLUS_7
  DEL PEAK 31(17Q11.2) MUTATED       14
  DEL PEAK 31(17Q11.2) WILD-TYPE     19
D56V6, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           23                             23
  CLUS_2                            8                             15
  CLUS_3                            7                             42
  CLUS_4                           12                             34
  CLUS_5                           14                             14
  CLUS_6                            3                             26
  CLUS_7                           14                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       40     21     19
  DEL PEAK 31(17Q11.2) WILD-TYPE     67     29     78
D56V7, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           40                             67
  CLUS_2                           21                             29
  CLUS_3                           19                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17Q11.2) MUTATED       34     19     20      7
  DEL PEAK 31(17Q11.2) WILD-TYPE     45     33     80     16
D56V8, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           34                             45
  CLUS_2                           19                             33
  CLUS_3                           20                             80
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       31     13     21
  DEL PEAK 31(17Q11.2) WILD-TYPE     52     51     25
D56V9, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           31                             52
  CLUS_2                           13                             51
  CLUS_3                           21                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED       11     13      5     12      1      7
  DEL PEAK 31(17Q11.2) WILD-TYPE     13     19     32     12     10     15
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 31(17Q11.2) MUTATED        8      8
  DEL PEAK 31(17Q11.2) WILD-TYPE     13     14
D56V10, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                           13                             19
  CLUS_3                            5                             32
  CLUS_4                           12                             12
  CLUS_5                            1                             10
  CLUS_6                            7                             15
  CLUS_7                            8                             13
  CLUS_8                            8                             14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 32(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17Q25.3) MUTATED       30      7     22      8
  DEL PEAK 32(17Q25.3) WILD-TYPE     40     79     52     18
D57V1, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           30                             40
  CLUS_2                            7                             79
  CLUS_3                           22                             52
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q25.3) MUTATED       14      6     22      4     19      1
  DEL PEAK 32(17Q25.3) WILD-TYPE     34     40     39     30     28     14
                                vv
clus                             CLUS_7
  DEL PEAK 32(17Q25.3) MUTATED        1
  DEL PEAK 32(17Q25.3) WILD-TYPE      4
D57V2, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           14                             34
  CLUS_2                            6                             40
  CLUS_3                           22                             39
  CLUS_4                            4                             30
  CLUS_5                           19                             28
  CLUS_6                            1                             14
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q25.3) MUTATED       13     27     20
  DEL PEAK 32(17Q25.3) WILD-TYPE     45     73     40
D57V3, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           13                             45
  CLUS_2                           27                             73
  CLUS_3                           20                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q25.3) MUTATED        5      6     14     21     12      2
  DEL PEAK 32(17Q25.3) WILD-TYPE     19     22     25     47     25     20
D57V4, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            6                             22
  CLUS_3                           14                             25
  CLUS_4                           21                             47
  CLUS_5                           12                             25
  CLUS_6                            2                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q25.3) MUTATED       31     25     11
  DEL PEAK 32(17Q25.3) WILD-TYPE     83     52     52
D57V5, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           31                             83
  CLUS_2                           25                             52
  CLUS_3                           11                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q25.3) MUTATED       14      6     16      6      9      8
  DEL PEAK 32(17Q25.3) WILD-TYPE     32     17     33     40     19     21
                                vv
clus                             CLUS_7
  DEL PEAK 32(17Q25.3) MUTATED        8
  DEL PEAK 32(17Q25.3) WILD-TYPE     25
D57V6, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           14                             32
  CLUS_2                            6                             17
  CLUS_3                           16                             33
  CLUS_4                            6                             40
  CLUS_5                            9                             19
  CLUS_6                            8                             21
  CLUS_7                            8                             25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q25.3) MUTATED       26     12     28
  DEL PEAK 32(17Q25.3) WILD-TYPE     81     38     69
D57V7, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           26                             81
  CLUS_2                           12                             38
  CLUS_3                           28                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17Q25.3) MUTATED       23     11     30      2
  DEL PEAK 32(17Q25.3) WILD-TYPE     56     41     70     21
D57V8, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           23                             56
  CLUS_2                           11                             41
  CLUS_3                           30                             70
  CLUS_4                            2                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q25.3) MUTATED       20     23     11
  DEL PEAK 32(17Q25.3) WILD-TYPE     63     41     35
D57V9, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           20                             63
  CLUS_2                           23                             41
  CLUS_3                           11                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q25.3) MUTATED       10      9     11      6      6      6
  DEL PEAK 32(17Q25.3) WILD-TYPE     14     23     26     18      5     16
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 32(17Q25.3) MUTATED        3      3
  DEL PEAK 32(17Q25.3) WILD-TYPE     18     19
D57V10, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            9                             23
  CLUS_3                           11                             26
  CLUS_4                            6                             18
  CLUS_5                            6                              5
  CLUS_6                            6                             16
  CLUS_7                            3                             18
  CLUS_8                            3                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 33(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(18Q23) MUTATED       30     15     31     10
  DEL PEAK 33(18Q23) WILD-TYPE     40     71     43     16
D58V1, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         30                           40
  CLUS_2                         15                           71
  CLUS_3                         31                           43
  CLUS_4                         10                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(18Q23) MUTATED       15     15     14      6     32      3      1
  DEL PEAK 33(18Q23) WILD-TYPE     33     31     47     28     15     12      4
D58V2, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         15                           33
  CLUS_2                         15                           31
  CLUS_3                         14                           47
  CLUS_4                          6                           28
  CLUS_5                         32                           15
  CLUS_6                          3                           12
  CLUS_7                          1                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED       13     49     14
  DEL PEAK 33(18Q23) WILD-TYPE     45     51     46
D58V3, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         13                           45
  CLUS_2                         49                           51
  CLUS_3                         14                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(18Q23) MUTATED        7      7     24     13     17      8
  DEL PEAK 33(18Q23) WILD-TYPE     17     21     15     55     20     14
D58V4, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                          7                           17
  CLUS_2                          7                           21
  CLUS_3                         24                           15
  CLUS_4                         13                           55
  CLUS_5                         17                           20
  CLUS_6                          8                           14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED       50     18     17
  DEL PEAK 33(18Q23) WILD-TYPE     64     59     46
D58V5, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         50                           64
  CLUS_2                         18                           59
  CLUS_3                         17                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(18Q23) MUTATED       16      7     12     11     17      5     17
  DEL PEAK 33(18Q23) WILD-TYPE     30     16     37     35     11     24     16
D58V6, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         16                           30
  CLUS_2                          7                           16
  CLUS_3                         12                           37
  CLUS_4                         11                           35
  CLUS_5                         17                           11
  CLUS_6                          5                           24
  CLUS_7                         17                           16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED       35     25     25
  DEL PEAK 33(18Q23) WILD-TYPE     72     25     72
D58V7, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         35                           72
  CLUS_2                         25                           25
  CLUS_3                         25                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(18Q23) MUTATED       32     21     27      5
  DEL PEAK 33(18Q23) WILD-TYPE     47     31     73     18
D58V8, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         32                           47
  CLUS_2                         21                           31
  CLUS_3                         27                           73
  CLUS_4                          5                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED       26     21     23
  DEL PEAK 33(18Q23) WILD-TYPE     57     43     23
D58V9, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         26                           57
  CLUS_2                         21                           43
  CLUS_3                         23                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(18Q23) MUTATED        6      8     10     11      1     14     15
  DEL PEAK 33(18Q23) WILD-TYPE     18     24     27     13     10      8      6
                              vv
clus                           CLUS_8
  DEL PEAK 33(18Q23) MUTATED        5
  DEL PEAK 33(18Q23) WILD-TYPE     17
D58V10, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                          6                           18
  CLUS_2                          8                           24
  CLUS_3                         10                           27
  CLUS_4                         11                           13
  CLUS_5                          1                           10
  CLUS_6                         14                            8
  CLUS_7                         15                            6
  CLUS_8                          5                           17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 34(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(19P13.3) MUTATED       27     12     28      3
  DEL PEAK 34(19P13.3) WILD-TYPE     43     74     46     23
D59V1, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           27                             43
  CLUS_2                           12                             74
  CLUS_3                           28                             46
  CLUS_4                            3                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        9      6     23      5     19      5
  DEL PEAK 34(19P13.3) WILD-TYPE     39     40     38     29     28     10
                                vv
clus                             CLUS_7
  DEL PEAK 34(19P13.3) MUTATED        3
  DEL PEAK 34(19P13.3) WILD-TYPE      2
D59V2, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            9                             39
  CLUS_2                            6                             40
  CLUS_3                           23                             38
  CLUS_4                            5                             29
  CLUS_5                           19                             28
  CLUS_6                            5                             10
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED       12     28     20
  DEL PEAK 34(19P13.3) WILD-TYPE     46     72     40
D59V3, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           12                             46
  CLUS_2                           28                             72
  CLUS_3                           20                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        7      3     13     23      6      8
  DEL PEAK 34(19P13.3) WILD-TYPE     17     25     26     45     31     14
D59V4, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            3                             25
  CLUS_3                           13                             26
  CLUS_4                           23                             45
  CLUS_5                            6                             31
  CLUS_6                            8                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED       23     31     16
  DEL PEAK 34(19P13.3) WILD-TYPE     91     46     47
D59V5, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           23                             91
  CLUS_2                           31                             46
  CLUS_3                           16                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        8      1     20      9      7     11
  DEL PEAK 34(19P13.3) WILD-TYPE     38     22     29     37     21     18
                                vv
clus                             CLUS_7
  DEL PEAK 34(19P13.3) MUTATED       14
  DEL PEAK 34(19P13.3) WILD-TYPE     19
D59V6, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            8                             38
  CLUS_2                            1                             22
  CLUS_3                           20                             29
  CLUS_4                            9                             37
  CLUS_5                            7                             21
  CLUS_6                           11                             18
  CLUS_7                           14                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED       20     12     36
  DEL PEAK 34(19P13.3) WILD-TYPE     87     38     61
D59V7, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           20                             87
  CLUS_2                           12                             38
  CLUS_3                           36                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(19P13.3) MUTATED       18      7     39      4
  DEL PEAK 34(19P13.3) WILD-TYPE     61     45     61     19
D59V8, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           18                             61
  CLUS_2                            7                             45
  CLUS_3                           39                             61
  CLUS_4                            4                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED       18     29      8
  DEL PEAK 34(19P13.3) WILD-TYPE     65     35     38
D59V9, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           18                             65
  CLUS_2                           29                             35
  CLUS_3                            8                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        3      5     18     10      3      8
  DEL PEAK 34(19P13.3) WILD-TYPE     21     27     19     14      8     14
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 34(19P13.3) MUTATED        4      4
  DEL PEAK 34(19P13.3) WILD-TYPE     17     18
D59V10, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            3                             21
  CLUS_2                            5                             27
  CLUS_3                           18                             19
  CLUS_4                           10                             14
  CLUS_5                            3                              8
  CLUS_6                            8                             14
  CLUS_7                            4                             17
  CLUS_8                            4                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 35(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19Q13.43) MUTATED       36     24     33     13
  DEL PEAK 35(19Q13.43) WILD-TYPE     34     62     41     13
D60V1, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            36                              34
  CLUS_2                            24                              62
  CLUS_3                            33                              41
  CLUS_4                            13                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED       26      9     31      8     22      7
  DEL PEAK 35(19Q13.43) WILD-TYPE     22     37     30     26     25      8
                                 vv
clus                              CLUS_7
  DEL PEAK 35(19Q13.43) MUTATED        3
  DEL PEAK 35(19Q13.43) WILD-TYPE      2
D60V2, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            26                              22
  CLUS_2                             9                              37
  CLUS_3                            31                              30
  CLUS_4                             8                              26
  CLUS_5                            22                              25
  CLUS_6                             7                               8
  CLUS_7                             3                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       19     42     30
  DEL PEAK 35(19Q13.43) WILD-TYPE     39     58     30
D60V3, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            19                              39
  CLUS_2                            42                              58
  CLUS_3                            30                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED       11      8     19     30     17      6
  DEL PEAK 35(19Q13.43) WILD-TYPE     13     20     20     38     20     16
D60V4, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            11                              13
  CLUS_2                             8                              20
  CLUS_3                            19                              20
  CLUS_4                            30                              38
  CLUS_5                            17                              20
  CLUS_6                             6                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       44     38     22
  DEL PEAK 35(19Q13.43) WILD-TYPE     70     39     41
D60V5, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            44                              70
  CLUS_2                            38                              39
  CLUS_3                            22                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED       19      9     27     18     10     11
  DEL PEAK 35(19Q13.43) WILD-TYPE     27     14     22     28     18     18
                                 vv
clus                              CLUS_7
  DEL PEAK 35(19Q13.43) MUTATED       10
  DEL PEAK 35(19Q13.43) WILD-TYPE     23
D60V6, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            19                              27
  CLUS_2                             9                              14
  CLUS_3                            27                              22
  CLUS_4                            18                              28
  CLUS_5                            10                              18
  CLUS_6                            11                              18
  CLUS_7                            10                              23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       42     19     44
  DEL PEAK 35(19Q13.43) WILD-TYPE     65     31     53
D60V7, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            42                              65
  CLUS_2                            19                              31
  CLUS_3                            44                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19Q13.43) MUTATED       36     23     42      4
  DEL PEAK 35(19Q13.43) WILD-TYPE     43     29     58     19
D60V8, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            36                              43
  CLUS_2                            23                              29
  CLUS_3                            42                              58
  CLUS_4                             4                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       32     29     22
  DEL PEAK 35(19Q13.43) WILD-TYPE     51     35     24
D60V9, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            32                              51
  CLUS_2                            29                              35
  CLUS_3                            22                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED       14     17     22      8      1      6
  DEL PEAK 35(19Q13.43) WILD-TYPE     10     15     15     16     10     16
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 35(19Q13.43) MUTATED       10      5
  DEL PEAK 35(19Q13.43) WILD-TYPE     11     17
D60V10, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            14                              10
  CLUS_2                            17                              15
  CLUS_3                            22                              15
  CLUS_4                             8                              16
  CLUS_5                             1                              10
  CLUS_6                             6                              16
  CLUS_7                            10                              11
  CLUS_8                             5                              17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 36(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q11.2) MUTATED       17     10     20      4
  DEL PEAK 36(21Q11.2) WILD-TYPE     53     76     54     22
D61V1, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           17                             53
  CLUS_2                           10                             76
  CLUS_3                           20                             54
  CLUS_4                            4                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q11.2) MUTATED        9     10      9      6     15      0
  DEL PEAK 36(21Q11.2) WILD-TYPE     39     36     52     28     32     15
                                vv
clus                             CLUS_7
  DEL PEAK 36(21Q11.2) MUTATED        2
  DEL PEAK 36(21Q11.2) WILD-TYPE      3
D61V2, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                            9                             39
  CLUS_2                           10                             36
  CLUS_3                            9                             52
  CLUS_4                            6                             28
  CLUS_5                           15                             32
  CLUS_6                            0                             15
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q11.2) MUTATED       10     26      8
  DEL PEAK 36(21Q11.2) WILD-TYPE     48     74     52
D61V3, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           10                             48
  CLUS_2                           26                             74
  CLUS_3                            8                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q11.2) MUTATED        4      4     13      7     10      6
  DEL PEAK 36(21Q11.2) WILD-TYPE     20     24     26     61     27     16
D61V4, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            4                             24
  CLUS_3                           13                             26
  CLUS_4                            7                             61
  CLUS_5                           10                             27
  CLUS_6                            6                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q11.2) MUTATED       26     10     14
  DEL PEAK 36(21Q11.2) WILD-TYPE     88     67     49
D61V5, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           26                             88
  CLUS_2                           10                             67
  CLUS_3                           14                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q11.2) MUTATED       10      3      6     10      7      3
  DEL PEAK 36(21Q11.2) WILD-TYPE     36     20     43     36     21     26
                                vv
clus                             CLUS_7
  DEL PEAK 36(21Q11.2) MUTATED       11
  DEL PEAK 36(21Q11.2) WILD-TYPE     22
D61V6, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           10                             36
  CLUS_2                            3                             20
  CLUS_3                            6                             43
  CLUS_4                           10                             36
  CLUS_5                            7                             21
  CLUS_6                            3                             26
  CLUS_7                           11                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q11.2) MUTATED       19     19     13
  DEL PEAK 36(21Q11.2) WILD-TYPE     88     31     84
D61V7, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           19                             88
  CLUS_2                           19                             31
  CLUS_3                           13                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q11.2) MUTATED       15     15     15      6
  DEL PEAK 36(21Q11.2) WILD-TYPE     64     37     85     17
D61V8, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           15                             64
  CLUS_2                           15                             37
  CLUS_3                           15                             85
  CLUS_4                            6                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q11.2) MUTATED       17     11     16
  DEL PEAK 36(21Q11.2) WILD-TYPE     66     53     30
D61V9, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           17                             66
  CLUS_2                           11                             53
  CLUS_3                           16                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q11.2) MUTATED        4      5      6      8      1      6
  DEL PEAK 36(21Q11.2) WILD-TYPE     20     27     31     16     10     16
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 36(21Q11.2) MUTATED        8      6
  DEL PEAK 36(21Q11.2) WILD-TYPE     13     16
D61V10, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            5                             27
  CLUS_3                            6                             31
  CLUS_4                            8                             16
  CLUS_5                            1                             10
  CLUS_6                            6                             16
  CLUS_7                            8                             13
  CLUS_8                            6                             16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 37(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(21Q22.3) MUTATED       20      9     26     11
  DEL PEAK 37(21Q22.3) WILD-TYPE     50     77     48     15
D62V1, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           20                             50
  CLUS_2                            9                             77
  CLUS_3                           26                             48
  CLUS_4                           11                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED       19      9     13      4     18      1
  DEL PEAK 37(21Q22.3) WILD-TYPE     29     37     48     30     29     14
                                vv
clus                             CLUS_7
  DEL PEAK 37(21Q22.3) MUTATED        2
  DEL PEAK 37(21Q22.3) WILD-TYPE      3
D62V2, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           19                             29
  CLUS_2                            9                             37
  CLUS_3                           13                             48
  CLUS_4                            4                             30
  CLUS_5                           18                             29
  CLUS_6                            1                             14
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       14     33     12
  DEL PEAK 37(21Q22.3) WILD-TYPE     44     67     48
D62V3, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           14                             44
  CLUS_2                           33                             67
  CLUS_3                           12                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED        6      7     18     10     14      4
  DEL PEAK 37(21Q22.3) WILD-TYPE     18     21     21     58     23     18
D62V4, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            7                             21
  CLUS_3                           18                             21
  CLUS_4                           10                             58
  CLUS_5                           14                             23
  CLUS_6                            4                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       37     14     15
  DEL PEAK 37(21Q22.3) WILD-TYPE     77     63     48
D62V5, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           37                             77
  CLUS_2                           14                             63
  CLUS_3                           15                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED       16      4     11     13      8      3
  DEL PEAK 37(21Q22.3) WILD-TYPE     30     19     38     33     20     26
                                vv
clus                             CLUS_7
  DEL PEAK 37(21Q22.3) MUTATED       11
  DEL PEAK 37(21Q22.3) WILD-TYPE     22
D62V6, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           16                             30
  CLUS_2                            4                             19
  CLUS_3                           11                             38
  CLUS_4                           13                             33
  CLUS_5                            8                             20
  CLUS_6                            3                             26
  CLUS_7                           11                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       29     16     21
  DEL PEAK 37(21Q22.3) WILD-TYPE     78     34     76
D62V7, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           29                             78
  CLUS_2                           16                             34
  CLUS_3                           21                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(21Q22.3) MUTATED       27     12     23      4
  DEL PEAK 37(21Q22.3) WILD-TYPE     52     40     77     19
D62V8, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           27                             52
  CLUS_2                           12                             40
  CLUS_3                           23                             77
  CLUS_4                            4                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       24     17     17
  DEL PEAK 37(21Q22.3) WILD-TYPE     59     47     29
D62V9, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           24                             59
  CLUS_2                           17                             47
  CLUS_3                           17                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED        6     12      8     10      3      7
  DEL PEAK 37(21Q22.3) WILD-TYPE     18     20     29     14      8     15
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 37(21Q22.3) MUTATED        8      4
  DEL PEAK 37(21Q22.3) WILD-TYPE     13     18
D62V10, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                           12                             20
  CLUS_3                            8                             29
  CLUS_4                           10                             14
  CLUS_5                            3                              8
  CLUS_6                            7                             15
  CLUS_7                            8                             13
  CLUS_8                            4                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 38(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(22Q13.32) MUTATED       41     11     22      9
  DEL PEAK 38(22Q13.32) WILD-TYPE     29     75     52     17
D63V1, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            41                              29
  CLUS_2                            11                              75
  CLUS_3                            22                              52
  CLUS_4                             9                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED       21     10     17     10     16      5
  DEL PEAK 38(22Q13.32) WILD-TYPE     27     36     44     24     31     10
                                 vv
clus                              CLUS_7
  DEL PEAK 38(22Q13.32) MUTATED        4
  DEL PEAK 38(22Q13.32) WILD-TYPE      1
D63V2, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            21                              27
  CLUS_2                            10                              36
  CLUS_3                            17                              44
  CLUS_4                            10                              24
  CLUS_5                            16                              31
  CLUS_6                             5                              10
  CLUS_7                             4                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED       21     34     19
  DEL PEAK 38(22Q13.32) WILD-TYPE     37     66     41
D63V3, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            21                              37
  CLUS_2                            34                              66
  CLUS_3                            19                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED       13      4     13     21     16      7
  DEL PEAK 38(22Q13.32) WILD-TYPE     11     24     26     47     21     15
D63V4, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            13                              11
  CLUS_2                             4                              24
  CLUS_3                            13                              26
  CLUS_4                            21                              47
  CLUS_5                            16                              21
  CLUS_6                             7                              15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED       34     25     23
  DEL PEAK 38(22Q13.32) WILD-TYPE     80     52     40
D63V5, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            34                              80
  CLUS_2                            25                              52
  CLUS_3                            23                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED       19      5     10     16      6     15
  DEL PEAK 38(22Q13.32) WILD-TYPE     27     18     39     30     22     14
                                 vv
clus                              CLUS_7
  DEL PEAK 38(22Q13.32) MUTATED       11
  DEL PEAK 38(22Q13.32) WILD-TYPE     22
D63V6, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            19                              27
  CLUS_2                             5                              18
  CLUS_3                            10                              39
  CLUS_4                            16                              30
  CLUS_5                             6                              22
  CLUS_6                            15                              14
  CLUS_7                            11                              22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED       38     18     26
  DEL PEAK 38(22Q13.32) WILD-TYPE     69     32     71
D63V7, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            38                              69
  CLUS_2                            18                              32
  CLUS_3                            26                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(22Q13.32) MUTATED       28     19     27      8
  DEL PEAK 38(22Q13.32) WILD-TYPE     51     33     73     15
D63V8, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            28                              51
  CLUS_2                            19                              33
  CLUS_3                            27                              73
  CLUS_4                             8                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED       33     23     17
  DEL PEAK 38(22Q13.32) WILD-TYPE     50     41     29
D63V9, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            33                              50
  CLUS_2                            23                              41
  CLUS_3                            17                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED       13     12     12      7      5      9
  DEL PEAK 38(22Q13.32) WILD-TYPE     11     20     25     17      6     13
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 38(22Q13.32) MUTATED        6      9
  DEL PEAK 38(22Q13.32) WILD-TYPE     15     13
D63V10, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            13                              11
  CLUS_2                            12                              20
  CLUS_3                            12                              25
  CLUS_4                             7                              17
  CLUS_5                             5                               6
  CLUS_6                             9                              13
  CLUS_7                             6                              15
  CLUS_8                             9                              13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 39(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(XP21.1) MUTATED       16     18     17      4
  DEL PEAK 39(XP21.1) WILD-TYPE     54     68     57     22
D64V1, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          16                            54
  CLUS_2                          18                            68
  CLUS_3                          17                            57
  CLUS_4                           4                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XP21.1) MUTATED        7      2     21      8     10      5
  DEL PEAK 39(XP21.1) WILD-TYPE     41     44     40     26     37     10
                               vv
clus                            CLUS_7
  DEL PEAK 39(XP21.1) MUTATED        2
  DEL PEAK 39(XP21.1) WILD-TYPE      3
D64V2, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           7                            41
  CLUS_2                           2                            44
  CLUS_3                          21                            40
  CLUS_4                           8                            26
  CLUS_5                          10                            37
  CLUS_6                           5                            10
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XP21.1) MUTATED        8     20     19
  DEL PEAK 39(XP21.1) WILD-TYPE     50     80     41
D64V3, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           8                            50
  CLUS_2                          20                            80
  CLUS_3                          19                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XP21.1) MUTATED        3      3      8     22      6      5
  DEL PEAK 39(XP21.1) WILD-TYPE     21     25     31     46     31     17
D64V4, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           3                            25
  CLUS_3                           8                            31
  CLUS_4                          22                            46
  CLUS_5                           6                            31
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XP21.1) MUTATED       18     26     10
  DEL PEAK 39(XP21.1) WILD-TYPE     96     51     53
D64V5, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          18                            96
  CLUS_2                          26                            51
  CLUS_3                          10                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XP21.1) MUTATED        7      1     15      7      8     11
  DEL PEAK 39(XP21.1) WILD-TYPE     39     22     34     39     20     18
                               vv
clus                            CLUS_7
  DEL PEAK 39(XP21.1) MUTATED        5
  DEL PEAK 39(XP21.1) WILD-TYPE     28
D64V6, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           7                            39
  CLUS_2                           1                            22
  CLUS_3                          15                            34
  CLUS_4                           7                            39
  CLUS_5                           8                            20
  CLUS_6                          11                            18
  CLUS_7                           5                            28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XP21.1) MUTATED       16      9     30
  DEL PEAK 39(XP21.1) WILD-TYPE     91     41     67
D64V7, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          16                            91
  CLUS_2                           9                            41
  CLUS_3                          30                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(XP21.1) MUTATED       10      9     30      6
  DEL PEAK 39(XP21.1) WILD-TYPE     69     43     70     17
D64V8, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          10                            69
  CLUS_2                           9                            43
  CLUS_3                          30                            70
  CLUS_4                           6                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XP21.1) MUTATED       14     17      9
  DEL PEAK 39(XP21.1) WILD-TYPE     69     47     37
D64V9, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          14                            69
  CLUS_2                          17                            47
  CLUS_3                           9                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XP21.1) MUTATED        5      2     14      3      1      4
  DEL PEAK 39(XP21.1) WILD-TYPE     19     30     23     21     10     18
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 39(XP21.1) MUTATED        4      7
  DEL PEAK 39(XP21.1) WILD-TYPE     17     15
D64V10, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           2                            30
  CLUS_3                          14                            23
  CLUS_4                           3                            21
  CLUS_5                           1                            10
  CLUS_6                           4                            18
  CLUS_7                           4                            17
  CLUS_8                           7                            15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 40(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XQ21.1) MUTATED       43     25     32     14
  DEL PEAK 40(XQ21.1) WILD-TYPE     27     61     42     12
D65V1, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          43                            27
  CLUS_2                          25                            61
  CLUS_3                          32                            42
  CLUS_4                          14                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ21.1) MUTATED       21     12     43     12     17      7
  DEL PEAK 40(XQ21.1) WILD-TYPE     27     34     18     22     30      8
                               vv
clus                            CLUS_7
  DEL PEAK 40(XQ21.1) MUTATED        2
  DEL PEAK 40(XQ21.1) WILD-TYPE      3
D65V2, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          21                            27
  CLUS_2                          12                            34
  CLUS_3                          43                            18
  CLUS_4                          12                            22
  CLUS_5                          17                            30
  CLUS_6                           7                             8
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ21.1) MUTATED       18     35     42
  DEL PEAK 40(XQ21.1) WILD-TYPE     40     65     18
D65V3, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          18                            40
  CLUS_2                          35                            65
  CLUS_3                          42                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ21.1) MUTATED       10      8     14     43     13      7
  DEL PEAK 40(XQ21.1) WILD-TYPE     14     20     25     25     24     15
D65V4, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                           8                            20
  CLUS_3                          14                            25
  CLUS_4                          43                            25
  CLUS_5                          13                            24
  CLUS_6                           7                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ21.1) MUTATED       38     51     24
  DEL PEAK 40(XQ21.1) WILD-TYPE     76     26     39
D65V5, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          38                            76
  CLUS_2                          51                            26
  CLUS_3                          24                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ21.1) MUTATED       18      7     36     16      7     15
  DEL PEAK 40(XQ21.1) WILD-TYPE     28     16     13     30     21     14
                               vv
clus                            CLUS_7
  DEL PEAK 40(XQ21.1) MUTATED       14
  DEL PEAK 40(XQ21.1) WILD-TYPE     19
D65V6, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          18                            28
  CLUS_2                           7                            16
  CLUS_3                          36                            13
  CLUS_4                          16                            30
  CLUS_5                           7                            21
  CLUS_6                          15                            14
  CLUS_7                          14                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ21.1) MUTATED       35     18     60
  DEL PEAK 40(XQ21.1) WILD-TYPE     72     32     37
D65V7, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          35                            72
  CLUS_2                          18                            32
  CLUS_3                          60                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XQ21.1) MUTATED       28     19     60      6
  DEL PEAK 40(XQ21.1) WILD-TYPE     51     33     40     17
D65V8, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          28                            51
  CLUS_2                          19                            33
  CLUS_3                          60                            40
  CLUS_4                           6                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ21.1) MUTATED       29     36     21
  DEL PEAK 40(XQ21.1) WILD-TYPE     54     28     25
D65V9, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          29                            54
  CLUS_2                          36                            28
  CLUS_3                          21                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ21.1) MUTATED       11     16     23     12      6      4
  DEL PEAK 40(XQ21.1) WILD-TYPE     13     16     14     12      5     18
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 40(XQ21.1) MUTATED        8      6
  DEL PEAK 40(XQ21.1) WILD-TYPE     13     16
D65V10, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          16                            16
  CLUS_3                          23                            14
  CLUS_4                          12                            12
  CLUS_5                           6                             5
  CLUS_6                           4                            18
  CLUS_7                           8                            13
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 41(XQ22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(XQ22.3) MUTATED       48     26     40      9
  DEL PEAK 41(XQ22.3) WILD-TYPE     22     60     34     17
D66V1, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          48                            22
  CLUS_2                          26                            60
  CLUS_3                          40                            34
  CLUS_4                           9                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(XQ22.3) MUTATED       27     11     45      9     21      6
  DEL PEAK 41(XQ22.3) WILD-TYPE     21     35     16     25     26      9
                               vv
clus                            CLUS_7
  DEL PEAK 41(XQ22.3) MUTATED        4
  DEL PEAK 41(XQ22.3) WILD-TYPE      1
D66V2, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          27                            21
  CLUS_2                          11                            35
  CLUS_3                          45                            16
  CLUS_4                           9                            25
  CLUS_5                          21                            26
  CLUS_6                           6                             9
  CLUS_7                           4                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ22.3) MUTATED       25     40     41
  DEL PEAK 41(XQ22.3) WILD-TYPE     33     60     19
D66V3, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          25                            33
  CLUS_2                          40                            60
  CLUS_3                          41                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(XQ22.3) MUTATED       12      9     17     45     18      5
  DEL PEAK 41(XQ22.3) WILD-TYPE     12     19     22     23     19     17
D66V4, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                           9                            19
  CLUS_3                          17                            22
  CLUS_4                          45                            23
  CLUS_5                          18                            19
  CLUS_6                           5                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ22.3) MUTATED       48     55     19
  DEL PEAK 41(XQ22.3) WILD-TYPE     66     22     44
D66V5, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          48                            66
  CLUS_2                          55                            22
  CLUS_3                          19                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(XQ22.3) MUTATED       26      6     35     13      9     19
  DEL PEAK 41(XQ22.3) WILD-TYPE     20     17     14     33     19     10
                               vv
clus                            CLUS_7
  DEL PEAK 41(XQ22.3) MUTATED       14
  DEL PEAK 41(XQ22.3) WILD-TYPE     19
D66V6, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          26                            20
  CLUS_2                           6                            17
  CLUS_3                          35                            14
  CLUS_4                          13                            33
  CLUS_5                           9                            19
  CLUS_6                          19                            10
  CLUS_7                          14                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ22.3) MUTATED       39     20     62
  DEL PEAK 41(XQ22.3) WILD-TYPE     68     30     35
D66V7, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          39                            68
  CLUS_2                          20                            30
  CLUS_3                          62                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(XQ22.3) MUTATED       32     19     63      7
  DEL PEAK 41(XQ22.3) WILD-TYPE     47     33     37     16
D66V8, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          32                            47
  CLUS_2                          19                            33
  CLUS_3                          63                            37
  CLUS_4                           7                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ22.3) MUTATED       33     40     22
  DEL PEAK 41(XQ22.3) WILD-TYPE     50     24     24
D66V9, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          33                            50
  CLUS_2                          40                            24
  CLUS_3                          22                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(XQ22.3) MUTATED       14     15     25     12      7      7
  DEL PEAK 41(XQ22.3) WILD-TYPE     10     17     12     12      4     15
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 41(XQ22.3) MUTATED        9      6
  DEL PEAK 41(XQ22.3) WILD-TYPE     12     16
D66V10, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          14                            10
  CLUS_2                          15                            17
  CLUS_3                          25                            12
  CLUS_4                          12                            12
  CLUS_5                           7                             4
  CLUS_6                           7                            15
  CLUS_7                           9                            12
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
