[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MUTATION_RATE"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                                           Clinical feature                            
TIME_FROM_SPECIMEN_DX_TO_DEATH_OR_LAST_FUP "TIME_FROM_SPECIMEN_DX_TO_DEATH_OR_LAST_FUP"
DAYS_TO_DEATH_OR_LAST_FUP                  "DAYS_TO_DEATH_OR_LAST_FUP"                 
AGE                                        "AGE"                                       
AGE_mutation.rate                          "AGE_mutation rate"                         
PRIMARY_SITE_OF_DISEASE                    "PRIMARY_SITE_OF_DISEASE"                   
NEOPLASM_DISEASESTAGE                      "NEOPLASM_DISEASESTAGE"                     
PATHOLOGY_T_STAGE                          "PATHOLOGY_T_STAGE"                         
PATHOLOGY_N_STAGE                          "PATHOLOGY_N_STAGE"                         
PATHOLOGY_M_STAGE                          "PATHOLOGY_M_STAGE"                         
MELANOMA_ULCERATION                        "MELANOMA_ULCERATION"                       
MELANOMA_PRIMARY_KNOWN                     "MELANOMA_PRIMARY_KNOWN"                    
BRESLOW_THICKNESS                          "BRESLOW_THICKNESS"                         
GENDER                                     "GENDER"                                    
RACE                                       "RACE"                                      
ETHNICITY                                  "ETHNICITY"                                 
                                           Statistical test            
TIME_FROM_SPECIMEN_DX_TO_DEATH_OR_LAST_FUP "Cox regression test"       
DAYS_TO_DEATH_OR_LAST_FUP                  "Cox regression test"       
AGE                                        "Spearman correlation test" 
AGE_mutation.rate                          "Linear Regression Analysis"
PRIMARY_SITE_OF_DISEASE                    "Kruskal-Wallis test"       
NEOPLASM_DISEASESTAGE                      "Kruskal-Wallis test"       
PATHOLOGY_T_STAGE                          "Spearman correlation test" 
PATHOLOGY_N_STAGE                          "Spearman correlation test" 
PATHOLOGY_M_STAGE                          "Wilcoxon test"             
MELANOMA_ULCERATION                        "Wilcoxon test"             
MELANOMA_PRIMARY_KNOWN                     "Wilcoxon test"             
BRESLOW_THICKNESS                          "Spearman correlation test" 
GENDER                                     "Wilcoxon test"             
RACE                                       "Kruskal-Wallis test"       
ETHNICITY                                  "Wilcoxon test"             
                                           Significant variables
TIME_FROM_SPECIMEN_DX_TO_DEATH_OR_LAST_FUP "N=0"                
DAYS_TO_DEATH_OR_LAST_FUP                  "N=0"                
AGE                                        "N=0"                
AGE_mutation.rate                          "N=2"                
PRIMARY_SITE_OF_DISEASE                    "N=0"                
NEOPLASM_DISEASESTAGE                      "N=0"                
PATHOLOGY_T_STAGE                          "N=0"                
PATHOLOGY_N_STAGE                          "N=0"                
PATHOLOGY_M_STAGE                          "N=0"                
MELANOMA_ULCERATION                        "N=2"                
MELANOMA_PRIMARY_KNOWN                     "N=1"                
BRESLOW_THICKNESS                          "N=0"                
GENDER                                     "N=2"                
RACE                                       "N=2"                
ETHNICITY                                  "N=0"                
                                           Associated with
TIME_FROM_SPECIMEN_DX_TO_DEATH_OR_LAST_FUP " "            
DAYS_TO_DEATH_OR_LAST_FUP                  " "            
AGE                                        " "            
AGE_mutation.rate                          " "            
PRIMARY_SITE_OF_DISEASE                    " "            
NEOPLASM_DISEASESTAGE                      " "            
PATHOLOGY_T_STAGE                          " "            
PATHOLOGY_N_STAGE                          " "            
PATHOLOGY_M_STAGE                          " "            
MELANOMA_ULCERATION                        "yes"          
MELANOMA_PRIMARY_KNOWN                     "yes"          
BRESLOW_THICKNESS                          " "            
GENDER                                     "male"         
RACE                                       " "            
ETHNICITY                                  " "            
                                           &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
TIME_FROM_SPECIMEN_DX_TO_DEATH_OR_LAST_FUP " "                                                                                       
DAYS_TO_DEATH_OR_LAST_FUP                  " "                                                                                       
AGE                                        " "                                                                                       
AGE_mutation.rate                          " "                                                                                       
PRIMARY_SITE_OF_DISEASE                    " "                                                                                       
NEOPLASM_DISEASESTAGE                      " "                                                                                       
PATHOLOGY_T_STAGE                          " "                                                                                       
PATHOLOGY_N_STAGE                          " "                                                                                       
PATHOLOGY_M_STAGE                          " "                                                                                       
MELANOMA_ULCERATION                        "N=2"                                                                                     
MELANOMA_PRIMARY_KNOWN                     "N=1"                                                                                     
BRESLOW_THICKNESS                          " "                                                                                       
GENDER                                     "N=2"                                                                                     
RACE                                       " "                                                                                       
ETHNICITY                                  " "                                                                                       
                                           Associated with      
TIME_FROM_SPECIMEN_DX_TO_DEATH_OR_LAST_FUP " "             " "  
DAYS_TO_DEATH_OR_LAST_FUP                  " "             " "  
AGE                                        " "             " "  
AGE_mutation.rate                          " "             " "  
PRIMARY_SITE_OF_DISEASE                    " "             " "  
NEOPLASM_DISEASESTAGE                      " "             " "  
PATHOLOGY_T_STAGE                          " "             " "  
PATHOLOGY_N_STAGE                          " "             " "  
PATHOLOGY_M_STAGE                          " "             " "  
MELANOMA_ULCERATION                        "no"            "N=0"
MELANOMA_PRIMARY_KNOWN                     "no"            "N=0"
BRESLOW_THICKNESS                          " "             " "  
GENDER                                     "female"        "N=0"
RACE                                       " "             " "  
ETHNICITY                                  " "             " "  
[1] "vtyp==survival in basici table generation"
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
