name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-D3-A1Q1-06A-21D-A196-08	61	58	3	45	4.918033e-02	exome+100bp flanks	2	35954526	...	12	40	54	3.337549e-07	1.112516e-06	1.501897e-06	-5.823360e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A1Q3-06A-11D-A196-08	61	59	2	40	3.278689e-02	exome+100bp flanks	2	35954526	...	18	33	57	5.006324e-07	9.178260e-07	1.585336e-06	-5.799879e+00	...	5	32222400	...	1.551716e-07
TCGA-D3-A1Q4-06A-11D-A196-08	348	332	16	219	4.597701e-02	exome+100bp flanks	2	35954526	...	109	204	319	3.031607e-06	5.673834e-06	8.872318e-06	-5.051963e+00	...	5	32222400	...	1.551716e-07
TCGA-D3-A1Q5-06A-11D-A196-08	456	441	15	300	3.289474e-02	exome+100bp flanks	2	35954526	...	135	281	424	3.754743e-06	7.815428e-06	1.179267e-05	-4.928388e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A1Q6-06A-11D-A196-08	1079	1050	29	657	2.687674e-02	coding only	1	28827810	...	377	621	1009	1.307765e-05	2.154170e-05	3.500092e-05	-4.455920e+00	...	4	28771618	...	1.390259e-07
TCGA-D3-A1Q7-06A-11D-A19A-08	132	125	7	78	5.303030e-02	exome+100bp flanks	2	35954526	...	46	71	120	1.279394e-06	1.974717e-06	3.337549e-06	-5.476572e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A1Q8-06A-11D-A19A-08	303	295	8	198	2.640264e-02	coding only	1	28827810	...	92	184	280	3.191363e-06	6.382726e-06	9.712843e-06	-5.012654e+00	...	1	28771618	...	3.475647e-08
TCGA-D3-A1Q9-06A-11D-A19A-08	45	42	3	36	6.666667e-02	exome+100bp flanks	2	35954526	...	6	33	43	1.668775e-07	9.178260e-07	1.195955e-06	-5.922285e+00	...	1	32222400	...	3.103431e-08
TCGA-D3-A1QA-06A-11D-A196-08	575	547	28	352	4.869565e-02	exome+100bp flanks	2	35954526	...	189	339	537	5.256640e-06	9.428577e-06	1.493553e-05	-4.825779e+00	...	5	32222400	...	1.551716e-07
TCGA-D3-A1QB-06A-11D-A19A-08	470	454	16	305	3.404255e-02	exome+100bp flanks	2	35954526	...	143	285	434	3.977246e-06	7.926679e-06	1.207080e-05	-4.918264e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A2J6-06A-11D-A19A-08	30	28	2	18	6.666667e-02	exome+100bp flanks	2	35954526	...	10	16	29	2.781291e-07	4.450066e-07	8.065744e-07	-6.093356e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A2J7-06A-11D-A196-08	446	432	14	303	3.139013e-02	exome+100bp flanks	2	35954526	...	122	288	414	3.393175e-06	8.010118e-06	1.151454e-05	-4.938753e+00	...	4	32222400	...	1.241372e-07
TCGA-D3-A2J8-06A-11D-A196-08	835	812	23	522	2.754491e-02	coding only	1	28827810	...	276	496	779	9.574088e-06	1.720561e-05	2.702252e-05	-4.568274e+00	...	4	28771618	...	1.390259e-07
TCGA-D3-A2J9-06A-11D-A196-08	102	98	4	56	3.921569e-02	exome+100bp flanks	2	35954526	...	40	51	92	1.112516e-06	1.418458e-06	2.558788e-06	-5.591966e+00	...	0	32222400	...	0
TCGA-D3-A2JA-06A-11D-A196-08	463	448	15	304	3.239741e-02	exome+100bp flanks	2	35954526	...	136	281	426	3.782556e-06	7.815428e-06	1.184830e-05	-4.926344e+00	...	5	32222400	...	1.551716e-07
TCGA-D3-A2JB-06A-11D-A196-08	21	19	2	17	9.523810e-02	exome+100bp flanks	2	35954526	...	2	14	18	5.562582e-08	3.893807e-07	5.006324e-07	-6.300481e+00	...	1	32222400	...	3.103431e-08
TCGA-D3-A2JC-06A-11D-A19A-08	263	254	9	172	3.422053e-02	exome+100bp flanks	2	35954526	...	77	164	245	2.141594e-06	4.561317e-06	6.814163e-06	-5.166587e+00	...	3	32222400	...	9.310293e-08
TCGA-D3-A2JD-06A-11D-A19A-08	516	501	15	315	2.906977e-02	coding only	1	28827810	...	178	302	487	6.174593e-06	1.047600e-05	1.689341e-05	-4.772283e+00	...	3	28771618	...	1.042694e-07
TCGA-D3-A2JF-06A-11D-A196-08	1822	1758	64	1198	3.512623e-02	exome+100bp flanks	2	35954526	...	537	1141	1693	1.493553e-05	3.173453e-05	4.708726e-05	-4.327097e+00	...	4	32222400	...	1.241372e-07
TCGA-D3-A2JG-06A-11D-A196-08	149	143	6	90	4.026846e-02	exome+100bp flanks	2	35954526	...	51	78	136	1.418458e-06	2.169407e-06	3.782556e-06	-5.422215e+00	...	6	32222400	...	1.862059e-07
TCGA-D3-A2JH-06A-11D-A196-08	824	797	27	525	3.276699e-02	exome+100bp flanks	2	35954526	...	259	493	759	7.203544e-06	1.371176e-05	2.111000e-05	-4.675512e+00	...	3	32222400	...	9.310293e-08
TCGA-D3-A2JK-06A-11D-A196-08	376	364	12	241	3.191489e-02	exome+100bp flanks	2	35954526	...	119	222	347	3.309736e-06	6.174466e-06	9.651080e-06	-5.015424e+00	...	1	32222400	...	3.103431e-08
TCGA-D3-A2JL-06A-11D-A196-08	428	412	16	283	3.738318e-02	exome+100bp flanks	2	35954526	...	123	261	394	3.420988e-06	7.259170e-06	1.095829e-05	-4.960257e+00	...	6	32222400	...	1.862059e-07
TCGA-D3-A2JN-06A-11D-A196-08	428	415	13	285	3.037383e-02	exome+100bp flanks	2	35954526	...	118	261	391	3.281923e-06	7.259170e-06	1.087485e-05	-4.963577e+00	...	10	32222400	...	3.103431e-07
TCGA-D3-A2JO-06A-11D-A196-08	796	763	33	520	4.145729e-02	exome+100bp flanks	2	35954526	...	234	494	741	6.508221e-06	1.373958e-05	2.060937e-05	-4.685935e+00	...	6	32222400	...	1.862059e-07
TCGA-D3-A2JP-06A-11D-A19A-08	352	337	15	235	4.261364e-02	exome+100bp flanks	2	35954526	...	93	222	323	2.586601e-06	6.174466e-06	8.983570e-06	-5.046551e+00	...	3	32222400	...	9.310293e-08
TCGA-D3-A3BZ-06A-12D-A196-08	91	84	7	71	7.692308e-02	exome+100bp flanks	2	35954526	...	13	66	82	3.615678e-07	1.835652e-06	2.280659e-06	-5.641940e+00	...	3	32222400	...	9.310293e-08
TCGA-D3-A3C1-06A-12D-A196-08	190	185	5	132	2.631579e-02	coding only	1	28827810	...	52	125	182	1.803814e-06	4.336091e-06	6.313348e-06	-5.199740e+00	...	3	28771618	...	1.042694e-07
TCGA-D3-A3C3-06A-12D-A19A-08	333	314	19	222	5.705706e-02	exome+100bp flanks	2	35954526	...	86	206	298	2.391910e-06	5.729459e-06	8.288247e-06	-5.081537e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A3C6-06A-12D-A196-08	148	140	8	88	5.405405e-02	exome+100bp flanks	2	35954526	...	47	79	131	1.307207e-06	2.197220e-06	3.643491e-06	-5.438482e+00	...	3	32222400	...	9.310293e-08
TCGA-D3-A3C7-06A-11D-A196-08	1194	1170	24	812	2.010050e-02	coding only	1	28827810	...	338	769	1118	1.172479e-05	2.667563e-05	3.878200e-05	-4.411370e+00	...	5	28771618	...	1.737824e-07
TCGA-D3-A3C8-06A-12D-A19A-08	925	892	33	605	3.567568e-02	exome+100bp flanks	2	35954526	...	277	578	872	7.704176e-06	1.607586e-05	2.425286e-05	-4.615237e+00	...	4	32222400	...	1.241372e-07
TCGA-D3-A3CB-06A-11D-A196-08	338	322	16	215	4.733728e-02	exome+100bp flanks	2	35954526	...	99	202	308	2.753478e-06	5.618208e-06	8.566376e-06	-5.067203e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A3CC-06A-11D-A19A-08	44	40	4	32	9.090909e-02	exome+100bp flanks	2	35954526	...	7	27	38	1.946904e-07	7.509486e-07	1.056891e-06	-5.975970e+00	...	3	32222400	...	9.310293e-08
TCGA-D3-A3CE-06A-11D-A19A-08	50	46	4	38	8.000000e-02	exome+100bp flanks	2	35954526	...	8	28	42	2.225033e-07	7.787615e-07	1.168142e-06	-5.932504e+00	...	6	32222400	...	1.862059e-07
TCGA-D3-A3CF-06A-11D-A196-08	39	38	1	31	2.564103e-02	exome+100bp flanks	2	35954526	...	6	29	35	1.668775e-07	8.065744e-07	9.734519e-07	-6.011686e+00	...	0	32222400	...	0
TCGA-D3-A3ML-06A-11D-A21A-08	1198	1149	49	759	4.090150e-02	exome+100bp flanks	2	35954526	...	373	712	1102	1.037422e-05	1.980279e-05	3.064983e-05	-4.513572e+00	...	6	32222400	...	1.862059e-07
TCGA-D3-A3MO-06A-11D-A21A-08	88	84	4	61	4.545455e-02	exome+100bp flanks	2	35954526	...	21	53	80	5.840711e-07	1.474084e-06	2.225033e-06	-5.652664e+00	...	5	32222400	...	1.551716e-07
TCGA-D3-A3MR-06A-11D-A21A-08	1152	1108	44	741	3.819444e-02	exome+100bp flanks	2	35954526	...	344	699	1064	9.567641e-06	1.944122e-05	2.959294e-05	-4.528812e+00	...	9	32222400	...	2.793088e-07
TCGA-D3-A3MU-06A-11D-A21A-08	628	605	23	426	3.662420e-02	exome+100bp flanks	2	35954526	...	171	404	583	4.756008e-06	1.123642e-05	1.621493e-05	-4.790085e+00	...	4	32222400	...	1.241372e-07
TCGA-D3-A3MV-06A-11D-A21A-08	693	661	32	416	4.617605e-02	exome+100bp flanks	2	35954526	...	232	388	636	6.452595e-06	1.079141e-05	1.768901e-05	-4.752296e+00	...	9	32222400	...	2.793088e-07
TCGA-D3-A51E-06A-11D-A25O-08	355	349	6	242	1.690141e-02	coding only	1	28827810	...	101	226	335	3.503561e-06	7.839652e-06	1.162072e-05	-4.934767e+00	...	5	28771618	...	1.737824e-07
TCGA-D3-A51F-06A-11D-A25O-08	168	160	8	108	4.761905e-02	exome+100bp flanks	2	35954526	...	48	104	153	1.335020e-06	2.892543e-06	4.255375e-06	-5.371062e+00	...	0	32222400	...	0
TCGA-D3-A51G-06A-11D-A25O-08	1594	1533	61	997	3.826851e-02	exome+100bp flanks	2	35954526	...	511	939	1480	1.421240e-05	2.611632e-05	4.116311e-05	-4.385492e+00	...	9	32222400	...	2.793088e-07
TCGA-D3-A51H-06A-12D-A25O-08	78	75	3	48	3.846154e-02	exome+100bp flanks	2	35954526	...	26	43	72	7.231357e-07	1.195955e-06	2.002530e-06	-5.698421e+00	...	3	32222400	...	9.310293e-08
TCGA-D3-A51J-06A-11D-A25O-08	582	566	16	392	2.749141e-02	coding only	1	28827810	...	162	374	539	5.619574e-06	1.297358e-05	1.869722e-05	-4.728223e+00	...	1	28771618	...	3.475647e-08
TCGA-D3-A51K-06A-11D-A25O-08	34	31	3	26	8.823529e-02	exome+100bp flanks	2	35954526	...	3	23	29	8.343873e-08	6.396969e-07	8.065744e-07	-6.093356e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A51N-06A-11D-A25O-08	124	120	4	89	3.225806e-02	exome+100bp flanks	2	35954526	...	30	82	114	8.343873e-07	2.280659e-06	3.170672e-06	-5.498849e+00	...	2	32222400	...	6.206862e-08
TCGA-D3-A51R-06A-11D-A25O-08	926	899	27	591	2.915767e-02	coding only	1	28827810	...	300	555	865	1.040662e-05	1.925224e-05	3.000575e-05	-4.522796e+00	...	4	28771618	...	1.390259e-07
TCGA-D3-A51T-06A-11D-A25O-08	1516	1451	65	966	4.287599e-02	exome+100bp flanks	2	35954526	...	453	927	1394	1.259925e-05	2.578257e-05	3.877120e-05	-4.411491e+00	...	5	32222400	...	1.551716e-07
TCGA-D3-A5GL-06A-11D-A27K-08	544	525	19	367	3.492647e-02	exome+100bp flanks	2	35954526	...	153	334	501	4.255375e-06	9.289512e-06	1.393427e-05	-4.855916e+00	...	8	32222400	...	2.482745e-07
TCGA-D3-A5GN-06A-11D-A27K-08	626	600	26	396	4.153355e-02	exome+100bp flanks	2	35954526	...	194	375	578	5.395705e-06	1.042984e-05	1.607586e-05	-4.793826e+00	...	4	32222400	...	1.241372e-07
TCGA-D3-A5GO-06A-12D-A27K-08	2047	1981	66	1315	3.224231e-02	exome+100bp flanks	2	35954526	...	640	1230	1886	1.780026e-05	3.420988e-05	5.245515e-05	-4.280212e+00	...	6	32222400	...	1.862059e-07
TCGA-D3-A5GR-06A-11D-A27K-08	342	332	10	216	2.923977e-02	coding only	1	28827810	...	111	198	316	3.850449e-06	6.868368e-06	1.096164e-05	-4.960125e+00	...	3	28771618	...	1.042694e-07
TCGA-D3-A5GS-06A-11D-A27K-08	520	499	21	329	4.038462e-02	exome+100bp flanks	2	35954526	...	164	316	487	4.561317e-06	8.788880e-06	1.354489e-05	-4.868225e+00	...	4	32222400	...	1.241372e-07
TCGA-D3-A5GU-06A-11D-A27K-08	875	861	14	609	1.600000e-02	coding only	1	28827810	...	248	577	834	8.602804e-06	2.001539e-05	2.893040e-05	-4.538646e+00	...	8	28771618	...	2.780518e-07
TCGA-D9-A148-06A-11D-A19A-08	372	359	13	237	3.494624e-02	exome+100bp flanks	2	35954526	...	116	219	341	3.226298e-06	6.091027e-06	9.484202e-06	-5.022999e+00	...	5	32222400	...	1.551716e-07
TCGA-D9-A149-06A-11D-A196-08	298	290	8	200	2.684564e-02	coding only	1	28827810	...	84	186	275	2.913853e-06	6.452103e-06	9.539400e-06	-5.020479e+00	...	3	28771618	...	1.042694e-07
TCGA-D9-A1JW-06A-11D-A19A-08	1167	1130	37	750	3.170523e-02	exome+100bp flanks	2	35954526	...	365	704	1093	1.015171e-05	1.958029e-05	3.039951e-05	-4.517133e+00	...	9	32222400	...	2.793088e-07
TCGA-D9-A1JX-06A-11D-A19A-08	237	232	5	167	2.109705e-02	coding only	1	28827810	...	62	154	220	2.150701e-06	5.342064e-06	7.631520e-06	-5.117389e+00	...	3	28771618	...	1.042694e-07
TCGA-D9-A3Z1-06A-11D-A23B-08	660	632	28	411	4.242424e-02	exome+100bp flanks	2	35954526	...	213	397	621	5.924150e-06	1.104173e-05	1.727182e-05	-4.762662e+00	...	5	32222400	...	1.551716e-07
TCGA-D9-A3Z3-06A-11D-A23B-08	177	166	11	110	6.214689e-02	exome+100bp flanks	2	35954526	...	55	107	163	1.529710e-06	2.975981e-06	4.533504e-06	-5.343566e+00	...	1	32222400	...	3.103431e-08
TCGA-D9-A6E9-06A-12D-A30X-08	235	224	11	169	4.680851e-02	exome+100bp flanks	2	35954526	...	54	155	213	1.501897e-06	4.311001e-06	5.924150e-06	-5.227374e+00	...	3	32222400	...	9.310293e-08
TCGA-D9-A6EA-06A-11D-A30X-08	850	831	19	554	2.235294e-02	coding only	1	28827810	...	261	526	798	9.053757e-06	1.824627e-05	2.768160e-05	-4.557809e+00	...	5	28771618	...	1.737824e-07
TCGA-D9-A6EC-06A-11D-A30X-08	5662	5507	155	3907	2.737549e-02	coding only	1	28827810	...	1522	3704	5279	5.279624e-05	1.284870e-04	1.831218e-04	-3.737260e+00	...	11	28771618	...	3.823212e-07
TCGA-D9-A6EG-06A-12D-A32N-08	133	103	30	71	2.255639e-01	exome+100bp flanks	2	35954526	...	30	64	101	8.343873e-07	1.780026e-06	2.809104e-06	-5.551432e+00	...	5	32222400	...	1.551716e-07
TCGA-DA-A1HV-06A-21D-A196-08	1774	1716	58	1133	3.269448e-02	exome+100bp flanks	2	35954526	...	560	1073	1650	1.557523e-05	2.984325e-05	4.589130e-05	-4.338270e+00	...	4	32222400	...	1.241372e-07
TCGA-DA-A1HW-06A-11D-A19A-08	425	405	20	264	4.705882e-02	exome+100bp flanks	2	35954526	...	137	247	395	3.810369e-06	6.869789e-06	1.098610e-05	-4.959156e+00	...	6	32222400	...	1.862059e-07
TCGA-DA-A1HY-06A-11D-A19A-08	938	910	28	616	2.985075e-02	coding only	1	28827810	...	284	584	881	9.851598e-06	2.025822e-05	3.056077e-05	-4.514836e+00	...	4	28771618	...	1.390259e-07
TCGA-DA-A1I0-06A-11D-A20D-08	645	618	27	417	4.186047e-02	exome+100bp flanks	2	35954526	...	195	386	594	5.423517e-06	1.073578e-05	1.652087e-05	-4.781967e+00	...	6	32222400	...	1.862059e-07
TCGA-DA-A1I1-06A-12D-A196-08	492	478	14	335	2.845528e-02	coding only	1	28827810	...	137	316	459	4.752355e-06	1.096164e-05	1.592213e-05	-4.797999e+00	...	3	28771618	...	1.042694e-07
TCGA-DA-A1I2-06A-21D-A19A-08	172	164	8	104	4.651163e-02	exome+100bp flanks	2	35954526	...	57	96	155	1.585336e-06	2.670039e-06	4.311001e-06	-5.365422e+00	...	2	32222400	...	6.206862e-08
TCGA-DA-A1I4-06A-11D-A196-08	333	325	8	228	2.402402e-02	coding only	1	28827810	...	93	215	314	3.226052e-06	7.458076e-06	1.089226e-05	-4.962882e+00	...	5	28771618	...	1.737824e-07
TCGA-DA-A1I5-06A-11D-A197-08	569	555	14	375	2.460457e-02	coding only	1	28827810	...	176	339	529	6.105216e-06	1.175948e-05	1.835034e-05	-4.736356e+00	...	7	28771618	...	2.432953e-07
TCGA-DA-A1I7-06A-22D-A197-08	589	572	17	375	2.886248e-02	coding only	1	28827810	...	185	348	545	6.417414e-06	1.207168e-05	1.890536e-05	-4.723415e+00	...	6	28771618	...	2.085388e-07
TCGA-DA-A1I8-06A-11D-A197-08	242	233	9	141	3.719008e-02	exome+100bp flanks	2	35954526	...	90	130	223	2.503162e-06	3.615678e-06	6.202279e-06	-5.207449e+00	...	2	32222400	...	6.206862e-08
TCGA-DA-A1IA-06A-11D-A196-08	458	447	11	282	2.401747e-02	coding only	1	28827810	...	159	267	436	5.515507e-06	9.261890e-06	1.512428e-05	-4.820325e+00	...	5	28771618	...	1.737824e-07
TCGA-DA-A1IB-06A-11D-A196-08	29	26	3	23	1.034483e-01	exome+100bp flanks	2	35954526	...	3	18	25	8.343873e-08	5.006324e-07	6.953228e-07	-6.157814e+00	...	4	32222400	...	1.241372e-07
TCGA-DA-A1IC-06A-11D-A197-08	1269	1224	45	794	3.546099e-02	exome+100bp flanks	2	35954526	...	408	742	1170	1.134767e-05	2.063718e-05	3.254110e-05	-4.487568e+00	...	7	32222400	...	2.172402e-07
TCGA-DA-A3F2-06A-11D-A20D-08	13	9	4	7	3.076923e-01	exome+100bp flanks	2	35954526	...	2	6	9	5.562582e-08	1.668775e-07	2.503162e-07	-6.601511e+00	...	1	32222400	...	3.103431e-08
TCGA-DA-A3F3-06A-11D-A20D-08	395	372	23	265	5.822785e-02	exome+100bp flanks	2	35954526	...	100	245	354	2.781291e-06	6.814163e-06	9.845770e-06	-5.006750e+00	...	5	32222400	...	1.551716e-07
TCGA-DA-A3F5-06A-11D-A20D-08	445	426	19	293	4.269663e-02	exome+100bp flanks	2	35954526	...	128	276	409	3.560052e-06	7.676363e-06	1.137548e-05	-4.944030e+00	...	4	32222400	...	1.241372e-07
TCGA-DA-A3F8-06A-11D-A20D-08	1558	1505	53	989	3.401797e-02	exome+100bp flanks	2	35954526	...	498	934	1452	1.385083e-05	2.597726e-05	4.038435e-05	-4.393787e+00	...	5	32222400	...	1.551716e-07
TCGA-EB-A44Q-06A-11D-A25O-08	70	67	3	53	4.285714e-02	exome+100bp flanks	2	35954526	...	13	48	65	3.615678e-07	1.335020e-06	1.807839e-06	-5.742840e+00	...	3	32222400	...	9.310293e-08
TCGA-EB-A44R-06A-41D-A25O-08	78	72	6	50	7.692308e-02	exome+100bp flanks	2	35954526	...	22	47	75	6.118840e-07	1.307207e-06	2.085968e-06	-5.680692e+00	...	2	32222400	...	6.206862e-08
TCGA-EB-A5KH-06A-11D-A27K-08	57	55	2	42	3.508772e-02	exome+100bp flanks	2	35954526	...	13	36	53	3.615678e-07	1.001265e-06	1.474084e-06	-5.831478e+00	...	4	32222400	...	1.241372e-07
TCGA-EB-A5SG-06A-11D-A30X-08	382	368	14	240	3.664921e-02	exome+100bp flanks	2	35954526	...	121	223	347	3.365362e-06	6.202279e-06	9.651080e-06	-5.015424e+00	...	2	32222400	...	6.206862e-08
TCGA-EB-A5SH-06A-11D-A30X-08	124	119	5	92	4.032258e-02	exome+100bp flanks	2	35954526	...	25	85	115	6.953228e-07	2.364097e-06	3.198485e-06	-5.495056e+00	...	4	32222400	...	1.241372e-07
TCGA-EB-A5UL-06A-11D-A30X-08	608	592	16	405	2.631579e-02	coding only	1	28827810	...	179	379	567	6.209282e-06	1.314703e-05	1.966851e-05	-4.706229e+00	...	2	28771618	...	6.951295e-08
TCGA-EB-A5UN-06A-11D-A30X-08	944	909	35	623	3.707627e-02	exome+100bp flanks	2	35954526	...	272	583	872	7.565112e-06	1.621493e-05	2.425286e-05	-4.615237e+00	...	9	32222400	...	2.793088e-07
TCGA-EB-A5VV-06A-11D-A32N-08	45	10	35	7	7.777778e-01	all capture (no interval list)	3	65770483	...	2	5	10	3.040878e-08	7.602194e-08	1.520439e-07	-6.818031e+00	...	1	31864365	...	3.138302e-08
TCGA-EB-A6L9-06A-11D-A32N-08	84	38	46	24	5.476190e-01	all capture (no interval list)	3	65770483	...	14	16	46	2.128614e-07	2.432702e-07	6.994019e-07	-6.155273e+00	...	7	31864365	...	2.196811e-07
TCGA-EE-A17X-06A-11D-A197-08	1019	989	30	673	2.944063e-02	coding only	1	28827810	...	303	638	953	1.051068e-05	2.213141e-05	3.305836e-05	-4.480719e+00	...	5	28771618	...	1.737824e-07
TCGA-EE-A17Y-06A-11D-A196-08	218	211	7	141	3.211009e-02	exome+100bp flanks	2	35954526	...	67	131	203	1.863465e-06	3.643491e-06	5.646021e-06	-5.248258e+00	...	3	32222400	...	9.310293e-08
TCGA-EE-A17Z-06A-11D-A196-08	29	29	0	25	0	exome+100bp flanks	2	35954526	...	4	20	28	1.112516e-07	5.562582e-07	7.787615e-07	-6.108596e+00	...	4	32222400	...	1.241372e-07
TCGA-EE-A180-06A-11D-A21A-08	683	656	27	448	3.953148e-02	exome+100bp flanks	2	35954526	...	198	416	631	5.506956e-06	1.157017e-05	1.754995e-05	-4.755724e+00	...	11	32222400	...	3.413774e-07
TCGA-EE-A181-06A-11D-A196-08	3891	3794	97	2511	2.492932e-02	coding only	1	28827810	...	1222	2391	3652	4.238962e-05	8.294074e-05	1.266832e-04	-3.897281e+00	...	13	28771618	...	4.518342e-07
TCGA-EE-A182-06A-11D-A196-08	1913	1842	71	1190	3.711448e-02	exome+100bp flanks	2	35954526	...	630	1122	1779	1.752213e-05	3.120609e-05	4.947917e-05	-4.305578e+00	...	11	32222400	...	3.413774e-07
TCGA-EE-A183-06A-11D-A196-08	989	958	31	660	3.134479e-02	exome+100bp flanks	2	35954526	...	276	624	913	7.676363e-06	1.735526e-05	2.539319e-05	-4.595283e+00	...	6	32222400	...	1.862059e-07
TCGA-EE-A184-06A-11D-A196-08	357	345	12	248	3.361345e-02	exome+100bp flanks	2	35954526	...	89	237	332	2.475349e-06	6.591660e-06	9.233886e-06	-5.034615e+00	...	4	32222400	...	1.241372e-07
TCGA-EE-A185-06A-11D-A196-08	248	241	7	163	2.822581e-02	coding only	1	28827810	...	75	150	228	2.601654e-06	5.203309e-06	7.909030e-06	-5.101877e+00	...	1	28771618	...	3.475647e-08
TCGA-EE-A20B-06A-11D-A196-08	233	224	9	157	3.862661e-02	exome+100bp flanks	2	35954526	...	67	144	219	1.863465e-06	4.005059e-06	6.091027e-06	-5.215309e+00	...	3	32222400	...	9.310293e-08
TCGA-EE-A20C-06A-11D-A196-08	2703	2614	89	1721	3.292638e-02	exome+100bp flanks	2	35954526	...	862	1614	2514	2.397473e-05	4.489004e-05	6.992166e-05	-4.155388e+00	...	16	32222400	...	4.965490e-07
TCGA-EE-A20F-06A-21D-A196-08	626	608	18	399	2.875399e-02	coding only	1	28827810	...	204	370	586	7.076500e-06	1.283483e-05	2.032759e-05	-4.691914e+00	...	8	28771618	...	2.780518e-07
TCGA-EE-A20H-06A-11D-A197-08	759	723	36	502	4.743083e-02	exome+100bp flanks	2	35954526	...	211	473	701	5.868524e-06	1.315551e-05	1.949685e-05	-4.710036e+00	...	7	32222400	...	2.172402e-07
TCGA-EE-A20I-06A-11D-A196-08	28	26	2	18	7.142857e-02	exome+100bp flanks	2	35954526	...	6	13	21	1.668775e-07	3.615678e-07	5.840711e-07	-6.233534e+00	...	2	32222400	...	6.206862e-08
TCGA-EE-A29A-06A-12D-A196-08	330	322	8	213	2.424242e-02	coding only	1	28827810	...	99	199	304	3.434184e-06	6.903056e-06	1.054537e-05	-4.976938e+00	...	6	28771618	...	2.085388e-07
TCGA-EE-A29B-06A-11D-A197-08	703	683	20	472	2.844950e-02	coding only	1	28827810	...	202	455	667	7.007123e-06	1.578337e-05	2.313738e-05	-4.635686e+00	...	3	28771618	...	1.042694e-07
TCGA-EE-A29C-06A-21D-A197-08	538	524	14	359	2.602230e-02	coding only	1	28827810	...	156	345	507	5.411441e-06	1.196761e-05	1.758718e-05	-4.754804e+00	...	3	28771618	...	1.042694e-07
TCGA-EE-A29D-06A-11D-A197-08	4887	4725	162	3080	3.314917e-02	exome+100bp flanks	2	35954526	...	1580	2900	4534	4.394440e-05	8.065744e-05	1.261037e-04	-3.899272e+00	...	18	32222400	...	5.586176e-07
TCGA-EE-A29E-06A-11D-A197-08	4585	4435	150	2884	3.271538e-02	exome+100bp flanks	2	35954526	...	1488	2751	4281	4.138561e-05	7.651332e-05	1.190671e-04	-3.924208e+00	...	8	32222400	...	2.482745e-07
TCGA-EE-A29G-06A-12D-A196-08	506	492	14	338	2.766798e-02	coding only	1	28827810	...	147	318	473	5.099243e-06	1.103101e-05	1.640777e-05	-4.784951e+00	...	6	28771618	...	2.085388e-07
TCGA-EE-A29H-06A-12D-A197-08	408	392	16	267	3.921569e-02	exome+100bp flanks	2	35954526	...	121	246	377	3.365362e-06	6.841976e-06	1.048547e-05	-4.979412e+00	...	6	32222400	...	1.862059e-07
TCGA-EE-A29L-06A-12D-A196-08	2587	2510	77	1652	2.976421e-02	coding only	1	28827810	...	821	1556	2405	2.847944e-05	5.397566e-05	8.342639e-05	-4.078697e+00	...	13	28771618	...	4.518342e-07
TCGA-EE-A29M-06A-11D-A196-08	3001	2892	109	1932	3.632123e-02	exome+100bp flanks	2	35954526	...	913	1824	2772	2.539319e-05	5.073075e-05	7.709739e-05	-4.112960e+00	...	12	32222400	...	3.724117e-07
TCGA-EE-A29N-06A-12D-A197-08	828	796	32	533	3.864734e-02	exome+100bp flanks	2	35954526	...	252	489	759	7.008853e-06	1.360051e-05	2.111000e-05	-4.675512e+00	...	13	32222400	...	4.034460e-07
TCGA-EE-A29P-06A-11D-A197-08	403	386	17	250	4.218362e-02	exome+100bp flanks	2	35954526	...	131	226	369	3.643491e-06	6.285718e-06	1.026296e-05	-4.988727e+00	...	6	32222400	...	1.862059e-07
TCGA-EE-A29Q-06A-11D-A197-08	382	366	16	240	4.188482e-02	exome+100bp flanks	2	35954526	...	119	224	352	3.309736e-06	6.230092e-06	9.790144e-06	-5.009211e+00	...	2	32222400	...	6.206862e-08
TCGA-EE-A29R-06A-11D-A197-08	885	851	34	544	3.841808e-02	exome+100bp flanks	2	35954526	...	292	513	812	8.121370e-06	1.426802e-05	2.258408e-05	-4.646198e+00	...	0	32222400	...	0
TCGA-EE-A29S-06A-11D-A197-08	1377	1335	42	879	3.050109e-02	exome+100bp flanks	2	35954526	...	431	832	1282	1.198736e-05	2.314034e-05	3.565615e-05	-4.447866e+00	...	6	32222400	...	1.862059e-07
TCGA-EE-A29T-06A-11D-A197-08	492	472	20	328	4.065041e-02	exome+100bp flanks	2	35954526	...	138	303	450	3.838182e-06	8.427312e-06	1.251581e-05	-4.902541e+00	...	7	32222400	...	2.172402e-07
TCGA-EE-A29V-06A-12D-A197-08	1333	1307	26	851	1.950488e-02	coding only	1	28827810	...	437	804	1253	1.515897e-05	2.788974e-05	4.346497e-05	-4.361861e+00	...	7	28771618	...	2.432953e-07
TCGA-EE-A29W-06A-11D-A196-08	93	93	0	67	0	coding only	1	28827810	...	24	63	90	8.325294e-07	2.185390e-06	3.121985e-06	-5.505569e+00	...	3	28771618	...	1.042694e-07
TCGA-EE-A29X-06A-11D-A196-08	200	188	12	120	6.000000e-02	exome+100bp flanks	2	35954526	...	63	114	181	1.752213e-06	3.170672e-06	5.034137e-06	-5.298075e+00	...	1	32222400	...	3.103431e-08
TCGA-EE-A2A0-06A-11D-A196-08	509	488	21	356	4.125737e-02	exome+100bp flanks	2	35954526	...	128	339	471	3.560052e-06	9.428577e-06	1.309988e-05	-4.882733e+00	...	3	32222400	...	9.310293e-08
TCGA-EE-A2A1-06A-11D-A197-08	503	478	25	326	4.970179e-02	exome+100bp flanks	2	35954526	...	148	306	469	4.116311e-06	8.510750e-06	1.304425e-05	-4.884581e+00	...	7	32222400	...	2.172402e-07
TCGA-EE-A2A2-06A-11D-A196-08	2117	2043	74	1401	3.495513e-02	exome+100bp flanks	2	35954526	...	613	1241	1951	1.704931e-05	3.451582e-05	5.426299e-05	-4.265496e+00	...	76	32222400	...	2.358608e-06
TCGA-EE-A2A5-06A-11D-A197-08	424	411	13	277	3.066038e-02	exome+100bp flanks	2	35954526	...	132	261	404	3.671304e-06	7.259170e-06	1.123642e-05	-4.949372e+00	...	6	32222400	...	1.862059e-07
TCGA-EE-A2A6-06A-11D-A197-08	396	387	9	254	2.272727e-02	coding only	1	28827810	...	129	243	378	4.474846e-06	8.429360e-06	1.311234e-05	-4.882320e+00	...	4	28771618	...	1.390259e-07
TCGA-EE-A2GB-06A-11D-A197-08	840	814	26	557	3.095238e-02	exome+100bp flanks	2	35954526	...	249	532	793	6.925415e-06	1.479647e-05	2.205564e-05	-4.656480e+00	...	6	32222400	...	1.862059e-07
TCGA-EE-A2GC-06A-11D-A197-08	2974	2873	101	1911	3.396100e-02	exome+100bp flanks	2	35954526	...	910	1818	2756	2.530975e-05	5.056387e-05	7.665238e-05	-4.115474e+00	...	13	32222400	...	4.034460e-07
TCGA-EE-A2GD-06A-11D-A196-08	717	687	30	468	4.184100e-02	exome+100bp flanks	2	35954526	...	213	443	668	5.924150e-06	1.232112e-05	1.857902e-05	-4.730977e+00	...	4	32222400	...	1.241372e-07
TCGA-EE-A2GE-06A-11D-A196-08	326	315	11	206	3.374233e-02	exome+100bp flanks	2	35954526	...	103	193	303	2.864730e-06	5.367892e-06	8.427312e-06	-5.074311e+00	...	3	32222400	...	9.310293e-08
TCGA-EE-A2GH-06A-11D-A196-08	420	401	19	277	4.523810e-02	exome+100bp flanks	2	35954526	...	120	248	381	3.337549e-06	6.897602e-06	1.059672e-05	-4.974829e+00	...	7	32222400	...	2.172402e-07
TCGA-EE-A2GI-06A-11D-A196-08	2043	1983	60	1313	2.936858e-02	coding only	1	28827810	...	651	1244	1919	2.258236e-05	4.315278e-05	6.656767e-05	-4.176737e+00	...	11	28771618	...	3.823212e-07
TCGA-EE-A2GJ-06A-11D-A196-08	1488	1443	45	925	3.024194e-02	exome+100bp flanks	2	35954526	...	491	878	1387	1.365614e-05	2.441974e-05	3.857651e-05	-4.413677e+00	...	5	32222400	...	1.551716e-07
TCGA-EE-A2GK-06A-11D-A196-08	4	4	0	4	0	exome+100bp flanks	2	35954526	...	0	0	3	0	0	8.343873e-08	-7.078632e+00	...	3	32222400	...	9.310293e-08
TCGA-EE-A2GL-06A-11D-A196-08	470	456	14	294	2.978723e-02	coding only	1	28827810	...	158	279	444	5.480819e-06	9.678155e-06	1.540179e-05	-4.812429e+00	...	3	28771618	...	1.042694e-07
TCGA-EE-A2GM-06B-11D-A196-08	931	899	32	599	3.437164e-02	exome+100bp flanks	2	35954526	...	284	558	860	7.898866e-06	1.551960e-05	2.391910e-05	-4.621255e+00	...	12	32222400	...	3.724117e-07
TCGA-EE-A2GN-06A-11D-A196-08	554	534	20	375	3.610108e-02	exome+100bp flanks	2	35954526	...	151	351	513	4.199749e-06	9.762331e-06	1.426802e-05	-4.845636e+00	...	5	32222400	...	1.551716e-07
TCGA-EE-A2GO-06A-11D-A196-08	2601	2510	91	1599	3.498654e-02	exome+100bp flanks	2	35954526	...	861	1506	2400	2.394692e-05	4.188624e-05	6.675098e-05	-4.175542e+00	...	10	32222400	...	3.103431e-07
TCGA-EE-A2GP-06A-11D-A197-08	806	786	20	517	2.481390e-02	coding only	1	28827810	...	263	484	760	9.123135e-06	1.678934e-05	2.636343e-05	-4.578998e+00	...	6	28771618	...	2.085388e-07
TCGA-EE-A2GR-06A-11D-A197-08	2109	2047	62	1332	2.939782e-02	coding only	1	28827810	...	695	1252	1984	2.410866e-05	4.343028e-05	6.882243e-05	-4.162270e+00	...	18	28771618	...	6.256165e-07
TCGA-EE-A2GS-06A-12D-A197-08	442	417	25	296	5.656109e-02	exome+100bp flanks	2	35954526	...	110	284	399	3.059420e-06	7.898866e-06	1.109735e-05	-4.954781e+00	...	2	32222400	...	6.206862e-08
TCGA-EE-A2GT-06A-12D-A197-08	451	438	13	295	2.882483e-02	coding only	1	28827810	...	135	276	418	4.682978e-06	9.574088e-06	1.449989e-05	-4.838635e+00	...	3	28771618	...	1.042694e-07
TCGA-EE-A2GU-06A-11D-A196-08	767	736	31	496	4.041721e-02	exome+100bp flanks	2	35954526	...	234	471	713	6.508221e-06	1.309988e-05	1.983060e-05	-4.702664e+00	...	1	32222400	...	3.103431e-08
TCGA-EE-A2M5-06A-12D-A197-08	2565	2488	77	1653	3.001949e-02	exome+100bp flanks	2	35954526	...	808	1552	2400	2.247283e-05	4.316564e-05	6.675098e-05	-4.175542e+00	...	13	32222400	...	4.034460e-07
TCGA-EE-A2M6-06A-12D-A197-08	695	680	15	465	2.158273e-02	coding only	1	28827810	...	208	434	658	7.215255e-06	1.505491e-05	2.282518e-05	-4.641586e+00	...	9	28771618	...	3.128083e-07
TCGA-EE-A2M7-06A-11D-A197-08	90	86	4	53	4.444444e-02	exome+100bp flanks	2	35954526	...	32	49	82	8.900131e-07	1.362833e-06	2.280659e-06	-5.641940e+00	...	1	32222400	...	3.103431e-08
TCGA-EE-A2M8-06A-12D-A196-08	148	143	5	97	3.378378e-02	exome+100bp flanks	2	35954526	...	43	92	136	1.195955e-06	2.558788e-06	3.782556e-06	-5.422215e+00	...	1	32222400	...	3.103431e-08
TCGA-EE-A2MC-06A-12D-A197-08	993	961	32	642	3.222558e-02	exome+100bp flanks	2	35954526	...	296	598	905	8.232621e-06	1.663212e-05	2.517068e-05	-4.599105e+00	...	6	32222400	...	1.862059e-07
TCGA-EE-A2MD-06A-11D-A197-08	2193	2119	74	1394	3.374373e-02	exome+100bp flanks	2	35954526	...	692	1303	2031	1.924653e-05	3.624022e-05	5.648802e-05	-4.248044e+00	...	10	32222400	...	3.103431e-07
TCGA-EE-A2ME-06A-11D-A197-08	79	77	2	50	2.531646e-02	coding only	1	28827810	...	26	44	71	9.019069e-07	1.526304e-06	2.462900e-06	-5.608553e+00	...	1	28771618	...	3.475647e-08
TCGA-EE-A2MF-06A-11D-A21A-08	974	936	38	629	3.901437e-02	exome+100bp flanks	2	35954526	...	291	593	909	8.093557e-06	1.649306e-05	2.528194e-05	-4.597190e+00	...	15	32222400	...	4.655147e-07
TCGA-EE-A2MG-06A-11D-A197-08	283	271	12	187	4.240283e-02	exome+100bp flanks	2	35954526	...	82	181	267	2.280659e-06	5.034137e-06	7.426047e-06	-5.129242e+00	...	0	32222400	...	0
TCGA-EE-A2MH-06A-11D-A197-08	202	190	12	116	5.940594e-02	exome+100bp flanks	2	35954526	...	72	104	183	2.002530e-06	2.892543e-06	5.089763e-06	-5.293302e+00	...	5	32222400	...	1.551716e-07
TCGA-EE-A2MI-06A-11D-A197-08	1390	1339	51	885	3.669065e-02	exome+100bp flanks	2	35954526	...	433	830	1281	1.204299e-05	2.308472e-05	3.562834e-05	-4.448204e+00	...	8	32222400	...	2.482745e-07
TCGA-EE-A2MJ-06A-11D-A197-08	2987	2892	95	1910	3.180449e-02	exome+100bp flanks	2	35954526	...	945	1817	2789	2.628320e-05	5.053606e-05	7.757021e-05	-4.110305e+00	...	5	32222400	...	1.551716e-07
TCGA-EE-A2MK-06A-11D-A196-08	380	369	11	243	2.894737e-02	coding only	1	28827810	...	121	232	359	4.197336e-06	8.047784e-06	1.245325e-05	-4.904717e+00	...	4	28771618	...	1.390259e-07
TCGA-EE-A2ML-06A-11D-A197-08	736	707	29	473	3.940217e-02	exome+100bp flanks	2	35954526	...	225	449	686	6.257905e-06	1.248800e-05	1.907966e-05	-4.719429e+00	...	6	32222400	...	1.862059e-07
TCGA-EE-A2MM-06A-11D-A196-08	728	699	29	457	3.983516e-02	exome+100bp flanks	2	35954526	...	234	437	682	6.508221e-06	1.215424e-05	1.896840e-05	-4.721969e+00	...	5	32222400	...	1.551716e-07
TCGA-EE-A2MN-06A-11D-A197-08	195	188	7	117	3.589744e-02	exome+100bp flanks	2	35954526	...	70	110	183	1.946904e-06	3.059420e-06	5.089763e-06	-5.293302e+00	...	2	32222400	...	6.206862e-08
TCGA-EE-A2MP-06A-11D-A197-08	371	360	11	255	2.964960e-02	coding only	1	28827810	...	100	236	346	3.468873e-06	8.186539e-06	1.200230e-05	-4.920736e+00	...	7	28771618	...	2.432953e-07
TCGA-EE-A2MQ-06A-11D-A197-08	341	332	9	225	2.639296e-02	coding only	1	28827810	...	105	208	322	3.642316e-06	7.215255e-06	1.116977e-05	-4.951956e+00	...	6	28771618	...	2.085388e-07
TCGA-EE-A2MR-06A-11D-A196-08	6568	6412	156	3963	2.375152e-02	coding only	1	28827810	...	2336	3751	6137	8.103286e-05	1.301174e-04	2.128847e-04	-3.671856e+00	...	7	28771618	...	2.432953e-07
TCGA-EE-A2MS-06A-11D-A197-08	3733	3620	113	2335	3.027056e-02	exome+100bp flanks	2	35954526	...	1225	2212	3487	3.407081e-05	6.152216e-05	9.698362e-05	-4.013302e+00	...	16	32222400	...	4.965490e-07
TCGA-EE-A2MT-06A-11D-A197-08	1173	1137	36	764	3.069054e-02	exome+100bp flanks	2	35954526	...	351	706	1077	9.762331e-06	1.963591e-05	2.995450e-05	-4.523538e+00	...	13	32222400	...	4.034460e-07
TCGA-EE-A2MU-06A-21D-A196-08	882	850	32	574	3.628118e-02	exome+100bp flanks	2	35954526	...	265	544	821	7.370421e-06	1.513022e-05	2.283440e-05	-4.641410e+00	...	2	32222400	...	6.206862e-08
TCGA-EE-A3AA-06A-11D-A196-08	2279	2224	55	1470	2.413339e-02	coding only	1	28827810	...	731	1400	2155	2.535746e-05	4.856422e-05	7.475420e-05	-4.126364e+00	...	6	28771618	...	2.085388e-07
TCGA-EE-A3AB-06A-11D-A196-08	862	843	19	587	2.204176e-02	coding only	1	28827810	...	246	562	814	8.533427e-06	1.949506e-05	2.823662e-05	-4.549187e+00	...	0	28771618	...	0
TCGA-EE-A3AC-06A-11D-A196-08	1304	1266	38	842	2.914110e-02	coding only	1	28827810	...	403	799	1215	1.397956e-05	2.771629e-05	4.214680e-05	-4.375235e+00	...	5	28771618	...	1.737824e-07
TCGA-EE-A3AD-06A-11D-A196-08	577	556	21	358	3.639515e-02	exome+100bp flanks	2	35954526	...	192	335	540	5.340079e-06	9.317325e-06	1.501897e-05	-4.823360e+00	...	7	32222400	...	2.172402e-07
TCGA-EE-A3AE-06A-11D-A196-08	1861	1791	70	1171	3.761419e-02	exome+100bp flanks	2	35954526	...	594	1117	1729	1.652087e-05	3.106702e-05	4.808852e-05	-4.317959e+00	...	4	32222400	...	1.241372e-07
TCGA-EE-A3AF-06A-11D-A196-08	1264	1233	31	855	2.452532e-02	coding only	1	28827810	...	356	799	1172	1.234919e-05	2.771629e-05	4.065519e-05	-4.390884e+00	...	8	28771618	...	2.780518e-07
TCGA-EE-A3AG-06A-31D-A196-08	2176	2111	65	1358	2.987132e-02	coding only	1	28827810	...	723	1269	2021	2.507995e-05	4.401999e-05	7.010592e-05	-4.154245e+00	...	14	28771618	...	4.865906e-07
TCGA-EE-A3AH-06A-11D-A196-08	497	485	12	341	2.414487e-02	coding only	1	28827810	...	140	304	462	4.856422e-06	1.054537e-05	1.602619e-05	-4.795170e+00	...	15	28771618	...	5.213471e-07
TCGA-EE-A3J3-06A-11D-A20D-08	230	220	10	143	4.347826e-02	exome+100bp flanks	2	35954526	...	75	135	213	2.085968e-06	3.754743e-06	5.924150e-06	-5.227374e+00	...	1	32222400	...	3.103431e-08
TCGA-EE-A3J4-06A-11D-A20D-08	416	393	23	283	5.528846e-02	exome+100bp flanks	2	35954526	...	104	266	376	2.892543e-06	7.398234e-06	1.045765e-05	-4.980566e+00	...	5	32222400	...	1.551716e-07
TCGA-EE-A3J5-06A-11D-A20D-08	2763	2662	101	1810	3.655447e-02	exome+100bp flanks	2	35954526	...	818	1703	2571	2.275096e-05	4.736539e-05	7.150699e-05	-4.145651e+00	...	20	32222400	...	6.206862e-07
TCGA-EE-A3J7-06A-11D-A20D-08	1315	1281	34	837	2.585551e-02	coding only	1	28827810	...	421	780	1225	1.460395e-05	2.705721e-05	4.249369e-05	-4.371676e+00	...	14	28771618	...	4.865906e-07
TCGA-EE-A3J8-06A-11D-A20D-08	360	338	22	226	6.111111e-02	exome+100bp flanks	2	35954526	...	107	211	323	2.975981e-06	5.868524e-06	8.983570e-06	-5.046551e+00	...	2	32222400	...	6.206862e-08
TCGA-EE-A3JA-06A-11D-A20D-08	1328	1268	60	818	4.518072e-02	exome+100bp flanks	2	35954526	...	418	770	1210	1.162580e-05	2.141594e-05	3.365362e-05	-4.472968e+00	...	8	32222400	...	2.482745e-07
TCGA-EE-A3JB-06A-11D-A21A-08	811	781	30	524	3.699137e-02	exome+100bp flanks	2	35954526	...	249	492	753	6.925415e-06	1.368395e-05	2.094312e-05	-4.678959e+00	...	7	32222400	...	2.172402e-07
TCGA-EE-A3JD-06A-11D-A20D-08	3921	3792	129	2500	3.289977e-02	exome+100bp flanks	2	35954526	...	1236	2371	3646	3.437676e-05	6.594441e-05	1.014059e-04	-3.993937e+00	...	9	32222400	...	2.793088e-07
TCGA-EE-A3JE-06A-11D-A20D-08	369	362	7	251	1.897019e-02	coding only	1	28827810	...	107	240	351	3.711694e-06	8.325294e-06	1.217574e-05	-4.914505e+00	...	4	28771618	...	1.390259e-07
TCGA-EE-A3JH-06A-11D-A21A-08	253	241	12	155	4.743083e-02	exome+100bp flanks	2	35954526	...	81	146	233	2.252846e-06	4.060685e-06	6.480408e-06	-5.188398e+00	...	2	32222400	...	6.206862e-08
TCGA-EE-A3JI-06A-11D-A21A-08	1540	1487	53	1040	3.441558e-02	exome+100bp flanks	2	35954526	...	425	886	1426	1.182049e-05	2.464224e-05	3.966121e-05	-4.401634e+00	...	103	32222400	...	3.196534e-06
TCGA-ER-A193-06A-12D-A197-08	2462	2391	71	1645	2.883834e-02	coding only	1	28827810	...	713	1555	2299	2.473306e-05	5.394097e-05	7.974938e-05	-4.098273e+00	...	14	28771618	...	4.865906e-07
TCGA-ER-A195-06A-11D-A196-08	329	321	8	210	2.431611e-02	coding only	1	28827810	...	103	192	300	3.572939e-06	6.660235e-06	1.040662e-05	-4.982690e+00	...	3	28771618	...	1.042694e-07
TCGA-ER-A197-06A-32D-A197-08	58	58	0	47	0	coding only	1	28827810	...	11	43	57	3.815760e-07	1.491615e-06	1.977257e-06	-5.703937e+00	...	2	28771618	...	6.951295e-08
TCGA-ER-A198-06A-11D-A196-08	605	590	15	402	2.479339e-02	coding only	1	28827810	...	181	379	564	6.278659e-06	1.314703e-05	1.956444e-05	-4.708533e+00	...	2	28771618	...	6.951295e-08
TCGA-ER-A199-06A-11D-A197-08	359	344	15	237	4.178273e-02	exome+100bp flanks	2	35954526	...	105	227	340	2.920356e-06	6.313531e-06	9.456389e-06	-5.024275e+00	...	2	32222400	...	6.206862e-08
TCGA-ER-A19A-06A-21D-A197-08	553	535	18	348	3.254973e-02	exome+100bp flanks	2	35954526	...	175	330	510	4.867259e-06	9.178260e-06	1.418458e-05	-4.848183e+00	...	0	32222400	...	0
TCGA-ER-A19B-06A-11D-A196-08	144	141	3	105	2.083333e-02	coding only	1	28827810	...	35	99	137	1.214105e-06	3.434184e-06	4.752355e-06	-5.323091e+00	...	3	28771618	...	1.042694e-07
TCGA-ER-A19C-06A-11D-A196-08	124	117	7	67	5.645161e-02	exome+100bp flanks	2	35954526	...	47	65	113	1.307207e-06	1.807839e-06	3.142859e-06	-5.502675e+00	...	0	32222400	...	0
TCGA-ER-A19D-06A-11D-A197-08	601	579	22	370	3.660566e-02	exome+100bp flanks	2	35954526	...	196	349	550	5.451330e-06	9.706706e-06	1.529710e-05	-4.815391e+00	...	2	32222400	...	6.206862e-08
TCGA-ER-A19E-06A-11D-A197-08	583	567	16	390	2.744425e-02	coding only	1	28827810	...	169	370	549	5.862395e-06	1.283483e-05	1.904411e-05	-4.720239e+00	...	7	28771618	...	2.432953e-07
TCGA-ER-A19F-06A-11D-A196-08	1275	1222	53	828	4.156863e-02	exome+100bp flanks	2	35954526	...	368	782	1174	1.023515e-05	2.174970e-05	3.265236e-05	-4.486085e+00	...	9	32222400	...	2.793088e-07
TCGA-ER-A19G-06A-11D-A196-08	681	653	28	424	4.111601e-02	exome+100bp flanks	2	35954526	...	219	398	637	6.091027e-06	1.106954e-05	1.771682e-05	-4.751614e+00	...	12	32222400	...	3.724117e-07
TCGA-ER-A19H-06A-12D-A196-08	348	337	11	221	3.160920e-02	exome+100bp flanks	2	35954526	...	110	199	316	3.059420e-06	5.534769e-06	8.788880e-06	-5.056066e+00	...	2	32222400	...	6.206862e-08
TCGA-ER-A19J-06A-11D-A196-08	287	272	15	183	5.226481e-02	exome+100bp flanks	2	35954526	...	84	167	261	2.336284e-06	4.644756e-06	7.259170e-06	-5.139113e+00	...	6	32222400	...	1.862059e-07
TCGA-ER-A19L-06A-12D-A197-08	78	74	4	48	5.128205e-02	exome+100bp flanks	2	35954526	...	23	44	68	6.396969e-07	1.223768e-06	1.891278e-06	-5.723245e+00	...	0	32222400	...	0
TCGA-ER-A19M-06A-61D-A23B-08	625	606	19	388	3.040000e-02	exome+100bp flanks	2	35954526	...	209	366	583	5.812898e-06	1.017953e-05	1.621493e-05	-4.790085e+00	...	1	32222400	...	3.103431e-08
TCGA-ER-A19N-06A-11D-A197-08	630	604	26	411	4.126984e-02	exome+100bp flanks	2	35954526	...	179	391	574	4.978511e-06	1.087485e-05	1.596461e-05	-4.796842e+00	...	0	32222400	...	0
TCGA-ER-A19O-06A-11D-A197-08	224	214	10	147	4.464286e-02	exome+100bp flanks	2	35954526	...	63	137	202	1.752213e-06	3.810369e-06	5.618208e-06	-5.250402e+00	...	1	32222400	...	3.103431e-08
TCGA-ER-A19P-06A-11D-A196-08	2204	2148	56	1584	2.540835e-02	coding only	1	28827810	...	533	1490	2054	1.848909e-05	5.168620e-05	7.125064e-05	-4.147211e+00	...	15	28771618	...	5.213471e-07
TCGA-ER-A19Q-06A-11D-A197-08	154	153	1	105	6.493506e-03	coding only	1	28827810	...	46	100	149	1.595681e-06	3.468873e-06	5.168620e-06	-5.286625e+00	...	3	28771618	...	1.042694e-07
TCGA-ER-A19S-06A-11D-A196-08	276	266	10	184	3.623188e-02	exome+100bp flanks	2	35954526	...	77	174	253	2.141594e-06	4.839446e-06	7.036666e-06	-5.152633e+00	...	1	32222400	...	3.103431e-08
TCGA-ER-A19T-06A-11D-A19A-08	61	59	2	48	3.278689e-02	exome+100bp flanks	2	35954526	...	11	41	57	3.059420e-07	1.140329e-06	1.585336e-06	-5.799879e+00	...	4	32222400	...	1.241372e-07
TCGA-ER-A19W-06A-41D-A23B-08	462	447	15	282	3.246753e-02	exome+100bp flanks	2	35954526	...	151	261	422	4.199749e-06	7.259170e-06	1.173705e-05	-4.930441e+00	...	4	32222400	...	1.241372e-07
TCGA-ER-A1A1-06A-11D-A197-08	326	320	6	220	1.840491e-02	coding only	1	28827810	...	93	206	302	3.226052e-06	7.145878e-06	1.047600e-05	-4.979805e+00	...	2	28771618	...	6.951295e-08
TCGA-ER-A2NC-06A-11D-A197-08	514	490	24	321	4.669261e-02	exome+100bp flanks	2	35954526	...	158	303	469	4.394440e-06	8.427312e-06	1.304425e-05	-4.884581e+00	...	2	32222400	...	6.206862e-08
TCGA-ER-A2ND-06A-11D-A196-08	135	128	7	95	5.185185e-02	exome+100bp flanks	2	35954526	...	33	90	125	9.178260e-07	2.503162e-06	3.476614e-06	-5.458844e+00	...	1	32222400	...	3.103431e-08
TCGA-ER-A2NE-06A-21D-A196-08	180	173	7	125	3.888889e-02	exome+100bp flanks	2	35954526	...	46	114	166	1.279394e-06	3.170672e-06	4.616943e-06	-5.335645e+00	...	5	32222400	...	1.551716e-07
TCGA-ER-A2NF-06A-11D-A19A-08	46	43	3	29	6.521739e-02	exome+100bp flanks	2	35954526	...	14	26	42	3.893807e-07	7.231357e-07	1.168142e-06	-5.932504e+00	...	2	32222400	...	6.206862e-08
TCGA-ER-A2NG-06A-11D-A196-08	332	314	18	216	5.421687e-02	exome+100bp flanks	2	35954526	...	98	205	307	2.725665e-06	5.701647e-06	8.538563e-06	-5.068615e+00	...	2	32222400	...	6.206862e-08
TCGA-ER-A2NH-06A-11D-A196-08	397	386	11	258	2.770781e-02	coding only	1	28827810	...	125	242	373	4.336091e-06	8.394672e-06	1.293889e-05	-4.888103e+00	...	4	28771618	...	1.390259e-07
TCGA-ER-A3ES-06A-11D-A20D-08	44	36	8	31	1.818182e-01	exome+100bp flanks	2	35954526	...	5	24	35	1.390646e-07	6.675098e-07	9.734519e-07	-6.011686e+00	...	6	32222400	...	1.862059e-07
TCGA-ER-A3ET-06A-11D-A20D-08	128	122	6	95	4.687500e-02	exome+100bp flanks	2	35954526	...	26	89	120	7.231357e-07	2.475349e-06	3.337549e-06	-5.476572e+00	...	4	32222400	...	1.241372e-07
TCGA-ER-A3EV-06A-11D-A20D-08	123	119	4	97	3.252033e-02	exome+100bp flanks	2	35954526	...	19	84	112	5.284453e-07	2.336284e-06	3.115046e-06	-5.506536e+00	...	8	32222400	...	2.482745e-07
TCGA-ER-A3PL-06A-11D-A23B-08	488	470	18	302	3.688525e-02	exome+100bp flanks	2	35954526	...	160	278	444	4.450066e-06	7.731989e-06	1.234893e-05	-4.908371e+00	...	4	32222400	...	1.241372e-07
TCGA-ER-A42K-06A-11D-A24R-08	252	240	12	163	4.761905e-02	exome+100bp flanks	2	35954526	...	74	151	230	2.058155e-06	4.199749e-06	6.396969e-06	-5.194026e+00	...	3	32222400	...	9.310293e-08
TCGA-ER-A42L-06A-11D-A24R-08	1294	1241	53	814	4.095827e-02	exome+100bp flanks	2	35954526	...	409	786	1211	1.137548e-05	2.186095e-05	3.368143e-05	-4.472609e+00	...	3	32222400	...	9.310293e-08
TCGA-FR-A3YN-06A-11D-A23B-08	743	715	28	470	3.768506e-02	exome+100bp flanks	2	35954526	...	238	443	695	6.619473e-06	1.232112e-05	1.932997e-05	-4.713769e+00	...	8	32222400	...	2.482745e-07
TCGA-FR-A3YO-06A-11D-A23B-08	1112	1062	50	701	4.496403e-02	exome+100bp flanks	2	35954526	...	350	656	1018	9.734519e-06	1.824527e-05	2.831354e-05	-4.548006e+00	...	3	32222400	...	9.310293e-08
TCGA-FR-A44A-06A-11D-A24R-08	398	388	10	248	2.512563e-02	coding only	1	28827810	...	133	234	372	4.613601e-06	8.117162e-06	1.290421e-05	-4.889269e+00	...	4	28771618	...	1.390259e-07
TCGA-FR-A69P-06A-21D-A30X-08	286	270	16	193	5.594406e-02	exome+100bp flanks	2	35954526	...	76	180	265	2.113781e-06	5.006324e-06	7.370421e-06	-5.132508e+00	...	4	32222400	...	1.241372e-07
TCGA-FS-A1YW-06A-11D-A197-08	213	197	16	136	7.511737e-02	exome+100bp flanks	2	35954526	...	59	126	191	1.640962e-06	3.504427e-06	5.312266e-06	-5.274720e+00	...	5	32222400	...	1.551716e-07
TCGA-FS-A1YX-06A-11D-A197-08	33	30	3	26	9.090909e-02	exome+100bp flanks	2	35954526	...	4	21	29	1.112516e-07	5.840711e-07	8.065744e-07	-6.093356e+00	...	4	32222400	...	1.241372e-07
TCGA-FS-A1YY-06A-11D-A197-08	263	253	10	164	3.802281e-02	exome+100bp flanks	2	35954526	...	86	152	243	2.391910e-06	4.227562e-06	6.758537e-06	-5.170147e+00	...	3	32222400	...	9.310293e-08
TCGA-FS-A1Z0-06A-11D-A197-08	343	336	7	229	2.040816e-02	coding only	1	28827810	...	102	217	322	3.538250e-06	7.527454e-06	1.116977e-05	-4.951956e+00	...	3	28771618	...	1.042694e-07
TCGA-FS-A1Z3-06A-11D-A197-08	1326	1282	44	870	3.318250e-02	exome+100bp flanks	2	35954526	...	394	829	1241	1.095829e-05	2.305690e-05	3.451582e-05	-4.461982e+00	...	8	32222400	...	2.482745e-07
TCGA-FS-A1Z4-06A-11D-A197-08	57	54	3	40	5.263158e-02	exome+100bp flanks	2	35954526	...	12	32	50	3.337549e-07	8.900131e-07	1.390646e-06	-5.856784e+00	...	4	32222400	...	1.241372e-07
TCGA-FS-A1Z7-06A-11D-A197-08	243	232	11	156	4.526749e-02	exome+100bp flanks	2	35954526	...	74	149	226	2.058155e-06	4.144124e-06	6.285718e-06	-5.201645e+00	...	2	32222400	...	6.206862e-08
TCGA-FS-A1ZA-06A-11D-A197-08	1525	1481	44	1003	2.885246e-02	coding only	1	28827810	...	458	943	1418	1.588744e-05	3.271147e-05	4.918861e-05	-4.308135e+00	...	8	28771618	...	2.780518e-07
TCGA-FS-A1ZB-06A-12D-A197-08	307	301	6	200	1.954397e-02	coding only	1	28827810	...	94	191	288	3.260740e-06	6.625547e-06	9.990353e-06	-5.000419e+00	...	2	28771618	...	6.951295e-08
TCGA-FS-A1ZC-06A-11D-A197-08	921	888	33	572	3.583062e-02	exome+100bp flanks	2	35954526	...	309	542	862	8.594189e-06	1.507460e-05	2.397473e-05	-4.620246e+00	...	5	32222400	...	1.551716e-07
TCGA-FS-A1ZD-06A-11D-A197-08	328	317	11	224	3.353659e-02	exome+100bp flanks	2	35954526	...	89	209	307	2.475349e-06	5.812898e-06	8.538563e-06	-5.068615e+00	...	8	32222400	...	2.482745e-07
TCGA-FS-A1ZE-06A-11D-A197-08	188	180	8	125	4.255319e-02	exome+100bp flanks	2	35954526	...	50	110	171	1.390646e-06	3.059420e-06	4.756008e-06	-5.322757e+00	...	8	32222400	...	2.482745e-07
TCGA-FS-A1ZF-06A-12D-A197-08	264	251	13	166	4.924242e-02	exome+100bp flanks	2	35954526	...	83	159	245	2.308472e-06	4.422253e-06	6.814163e-06	-5.166587e+00	...	1	32222400	...	3.103431e-08
TCGA-FS-A1ZG-06A-11D-A197-08	48	46	2	31	4.166667e-02	exome+100bp flanks	2	35954526	...	15	28	46	4.171937e-07	7.787615e-07	1.279394e-06	-5.892996e+00	...	3	32222400	...	9.310293e-08
TCGA-FS-A1ZH-06A-11D-A197-08	42	39	3	29	7.142857e-02	exome+100bp flanks	2	35954526	...	10	26	37	2.781291e-07	7.231357e-07	1.029078e-06	-5.987552e+00	...	1	32222400	...	3.103431e-08
TCGA-FS-A1ZJ-06A-12D-A197-08	89	80	9	59	1.011236e-01	exome+100bp flanks	2	35954526	...	20	54	80	5.562582e-07	1.501897e-06	2.225033e-06	-5.652664e+00	...	3	32222400	...	9.310293e-08
TCGA-FS-A1ZK-06A-11D-A197-08	2071	2019	52	1315	2.510864e-02	coding only	1	28827810	...	662	1244	1927	2.296394e-05	4.315278e-05	6.684517e-05	-4.174930e+00	...	9	28771618	...	3.128083e-07
TCGA-FS-A1ZM-06A-12D-A197-08	323	313	10	213	3.095975e-02	exome+100bp flanks	2	35954526	...	96	198	297	2.670039e-06	5.506956e-06	8.260434e-06	-5.082997e+00	...	1	32222400	...	3.103431e-08
TCGA-FS-A1ZP-06A-11D-A197-08	547	538	9	350	1.645338e-02	coding only	1	28827810	...	181	332	520	6.278659e-06	1.151666e-05	1.803814e-05	-4.743808e+00	...	3	28771618	...	1.042694e-07
TCGA-FS-A1ZQ-06A-11D-A197-08	653	633	20	411	3.062787e-02	exome+100bp flanks	2	35954526	...	216	389	608	6.007589e-06	1.081922e-05	1.691025e-05	-4.771850e+00	...	1	32222400	...	3.103431e-08
TCGA-FS-A1ZR-06A-21D-A197-08	177	172	5	119	2.824859e-02	coding only	1	28827810	...	50	115	168	1.734436e-06	3.989203e-06	5.827706e-06	-5.234502e+00	...	2	28771618	...	6.951295e-08
TCGA-FS-A1ZS-06A-12D-A197-08	369	359	10	222	2.710027e-02	coding only	1	28827810	...	126	206	337	4.370779e-06	7.145878e-06	1.169010e-05	-4.932182e+00	...	5	28771618	...	1.737824e-07
TCGA-FS-A1ZT-06A-11D-A197-08	226	212	14	148	6.194690e-02	exome+100bp flanks	2	35954526	...	62	130	196	1.724400e-06	3.615678e-06	5.451330e-06	-5.263497e+00	...	1	32222400	...	3.103431e-08
TCGA-FS-A1ZU-06A-12D-A196-08	61	58	3	42	4.918033e-02	exome+100bp flanks	2	35954526	...	15	37	56	4.171937e-07	1.029078e-06	1.557523e-06	-5.807566e+00	...	4	32222400	...	1.241372e-07
TCGA-FS-A1ZW-06A-12D-A197-08	831	808	23	551	2.767750e-02	coding only	1	28827810	...	250	518	773	8.672181e-06	1.796876e-05	2.681439e-05	-4.571632e+00	...	2	28771618	...	6.951295e-08
TCGA-FS-A1ZY-06A-11D-A197-08	40	39	1	27	2.500000e-02	exome+100bp flanks	2	35954526	...	11	26	37	3.059420e-07	7.231357e-07	1.029078e-06	-5.987552e+00	...	0	32222400	...	0
TCGA-FS-A1ZZ-06A-11D-A197-08	1995	1918	77	1239	3.859649e-02	exome+100bp flanks	2	35954526	...	641	1163	1827	1.782808e-05	3.234641e-05	5.081419e-05	-4.294015e+00	...	5	32222400	...	1.551716e-07
TCGA-FS-A4F0-06A-11D-A24R-08	649	641	8	457	1.232666e-02	coding only	1	28827810	...	180	428	617	6.243971e-06	1.484677e-05	2.140294e-05	-4.669526e+00	...	7	28771618	...	2.432953e-07
TCGA-FS-A4F4-06A-12D-A25O-08	60	54	6	38	1.000000e-01	exome+100bp flanks	2	35954526	...	16	34	54	4.450066e-07	9.456389e-07	1.501897e-06	-5.823360e+00	...	3	32222400	...	9.310293e-08
TCGA-FS-A4F5-06A-11D-A25O-08	972	943	29	648	2.983539e-02	coding only	1	28827810	...	278	620	907	9.643466e-06	2.150701e-05	3.146267e-05	-4.502204e+00	...	5	28771618	...	1.737824e-07
TCGA-FS-A4F8-06A-11D-A25O-08	232	223	9	158	3.879310e-02	exome+100bp flanks	2	35954526	...	58	153	212	1.613149e-06	4.255375e-06	5.896337e-06	-5.229418e+00	...	1	32222400	...	3.103431e-08
TCGA-FS-A4F9-06A-11D-A24R-08	580	558	22	378	3.793103e-02	exome+100bp flanks	2	35954526	...	172	327	538	4.783821e-06	9.094822e-06	1.496335e-05	-4.824971e+00	...	33	32222400	...	1.024132e-06
TCGA-FS-A4FB-06A-11D-A25O-08	243	231	12	163	4.938272e-02	exome+100bp flanks	2	35954526	...	66	151	224	1.835652e-06	4.199749e-06	6.230092e-06	-5.205506e+00	...	4	32222400	...	1.241372e-07
TCGA-FS-A4FC-06A-11D-A24R-08	909	887	22	607	2.420242e-02	coding only	1	28827810	...	271	580	862	9.400645e-06	2.011946e-05	2.990168e-05	-4.524304e+00	...	3	28771618	...	1.042694e-07
TCGA-FS-A4FD-06A-11D-A25O-08	583	559	24	380	4.116638e-02	exome+100bp flanks	2	35954526	...	172	364	542	4.783821e-06	1.012390e-05	1.507460e-05	-4.821754e+00	...	2	32222400	...	6.206862e-08
TCGA-FW-A3I3-06A-11D-A21A-08	93	86	7	59	7.526882e-02	exome+100bp flanks	2	35954526	...	26	49	86	7.231357e-07	1.362833e-06	2.391910e-06	-5.621255e+00	...	9	32222400	...	2.793088e-07
TCGA-FW-A3R5-06A-11D-A23B-08	25922	25102	820	16083	3.163336e-02	exome+100bp flanks	2	35954526	...	8653	15308	24183	2.406651e-04	4.257600e-04	6.725996e-04	-3.172243e+00	...	13	32222400	...	4.034460e-07
TCGA-FW-A3TU-06A-11D-A23B-08	1004	972	32	643	3.187251e-02	exome+100bp flanks	2	35954526	...	315	602	926	8.761067e-06	1.674337e-05	2.575475e-05	-4.589143e+00	...	6	32222400	...	1.862059e-07
TCGA-FW-A3TV-06A-11D-A23B-08	436	418	18	277	4.128440e-02	exome+100bp flanks	2	35954526	...	138	265	409	3.838182e-06	7.370421e-06	1.137548e-05	-4.944030e+00	...	1	32222400	...	3.103431e-08
TCGA-FW-A5DY-06A-11D-A30X-08	307	298	9	201	2.931596e-02	coding only	1	28827810	...	92	195	289	3.191363e-06	6.764302e-06	1.002504e-05	-4.998914e+00	...	1	28771618	...	3.475647e-08
TCGA-GF-A3OT-06A-23D-A23B-08	706	681	25	450	3.541076e-02	exome+100bp flanks	2	35954526	...	221	417	647	6.146653e-06	1.159798e-05	1.799495e-05	-4.744849e+00	...	5	32222400	...	1.551716e-07
TCGA-GF-A4EO-06A-12D-A24R-08	313	306	7	211	2.236422e-02	coding only	1	28827810	...	92	198	300	3.191363e-06	6.868368e-06	1.040662e-05	-4.982690e+00	...	6	28771618	...	2.085388e-07
TCGA-GF-A6C8-06A-12D-A30X-08	489	477	12	323	2.453988e-02	coding only	1	28827810	...	150	309	464	5.203309e-06	1.071882e-05	1.609557e-05	-4.793294e+00	...	3	28771618	...	1.042694e-07
TCGA-GF-A6C9-06A-11D-A30X-08	4362	4248	114	2764	2.613480e-02	coding only	1	28827810	...	1422	2631	4093	4.932737e-05	9.126604e-05	1.419810e-04	-3.847770e+00	...	14	28771618	...	4.865906e-07
TCGA-GN-A262-06A-11D-A196-08	459	445	14	300	3.050109e-02	exome+100bp flanks	2	35954526	...	141	283	433	3.921620e-06	7.871054e-06	1.204299e-05	-4.919266e+00	...	5	32222400	...	1.551716e-07
TCGA-GN-A264-06A-11D-A196-08	64	60	4	47	6.250000e-02	exome+100bp flanks	2	35954526	...	13	38	59	3.615678e-07	1.056891e-06	1.640962e-06	-5.784902e+00	...	7	32222400	...	2.172402e-07
TCGA-GN-A265-06A-21D-A197-08	339	329	10	239	2.949853e-02	coding only	1	28827810	...	89	225	325	3.087297e-06	7.804963e-06	1.127384e-05	-4.947928e+00	...	9	28771618	...	3.128083e-07
TCGA-GN-A266-06A-11D-A197-08	5025	4889	136	3196	2.706468e-02	coding only	1	28827810	...	1625	3026	4697	5.636918e-05	1.049681e-04	1.629329e-04	-3.787991e+00	...	13	28771618	...	4.518342e-07
TCGA-GN-A267-06A-21D-A196-08	553	529	24	345	4.339964e-02	exome+100bp flanks	2	35954526	...	181	314	511	5.034137e-06	8.733254e-06	1.421240e-05	-4.847333e+00	...	8	32222400	...	2.482745e-07
TCGA-GN-A268-06A-11D-A196-08	442	428	14	294	3.167421e-02	exome+100bp flanks	2	35954526	...	131	273	412	3.643491e-06	7.592924e-06	1.145892e-05	-4.940856e+00	...	5	32222400	...	1.551716e-07
TCGA-GN-A26A-06A-11D-A19A-08	428	413	15	279	3.504673e-02	exome+100bp flanks	2	35954526	...	124	258	386	3.448801e-06	7.175731e-06	1.073578e-05	-4.969166e+00	...	3	32222400	...	9.310293e-08
TCGA-GN-A26D-06A-11D-A19A-08	62	60	2	47	3.225806e-02	exome+100bp flanks	2	35954526	...	13	41	58	3.615678e-07	1.140329e-06	1.613149e-06	-5.792326e+00	...	3	32222400	...	9.310293e-08
TCGA-GN-A4U3-06A-11D-A32N-08	440	398	42	260	9.545455e-02	exome+100bp flanks	2	35954526	...	133	249	392	3.699117e-06	6.925415e-06	1.090266e-05	-4.962468e+00	...	3	32222400	...	9.310293e-08
TCGA-GN-A4U4-06A-11D-A32N-08	925	846	79	571	8.540541e-02	exome+100bp flanks	2	35954526	...	266	543	825	7.398234e-06	1.510241e-05	2.294565e-05	-4.639300e+00	...	8	32222400	...	2.482745e-07
TCGA-GN-A4U7-06A-21D-A32N-08	380	335	45	218	1.184211e-01	exome+100bp flanks	2	35954526	...	106	198	315	2.948168e-06	5.506956e-06	8.761067e-06	-5.057443e+00	...	7	32222400	...	2.172402e-07
TCGA-GN-A4U8-06A-11D-A32N-08	576	480	96	337	1.666667e-01	exome+100bp flanks	2	35954526	...	136	314	465	3.782556e-06	8.733254e-06	1.293300e-05	-4.888301e+00	...	7	32222400	...	2.172402e-07
TCGA-GN-A4U9-06A-11D-A32N-08	119	84	35	64	2.941176e-01	exome+100bp flanks	2	35954526	...	18	61	86	5.006324e-07	1.696588e-06	2.391910e-06	-5.621255e+00	...	2	32222400	...	6.206862e-08
TCGA-OD-A75X-06A-12D-A32N-08	1345	1284	61	871	4.535316e-02	exome+100bp flanks	2	35954526	...	394	820	1234	1.095829e-05	2.280659e-05	3.432113e-05	-4.464438e+00	...	8	32222400	...	2.482745e-07
TCGA-QB-A6FS-06A-11D-A30X-08	1502	1455	47	966	3.129161e-02	exome+100bp flanks	2	35954526	...	465	913	1387	1.293300e-05	2.539319e-05	3.857651e-05	-4.413677e+00	...	2	32222400	...	6.206862e-08
TCGA-RP-A690-06A-11D-A30X-08	22	19	3	15	1.363636e-01	exome+100bp flanks	2	35954526	...	4	14	19	1.112516e-07	3.893807e-07	5.284453e-07	-6.277000e+00	...	0	32222400	...	0
TCGA-RP-A693-06A-13D-A30X-08	1014	990	24	682	2.366864e-02	coding only	1	28827810	...	296	643	953	1.026786e-05	2.230485e-05	3.305836e-05	-4.480719e+00	...	6	28771618	...	2.085388e-07
TCGA-RP-A694-06A-11D-A30X-08	896	861	35	576	3.906250e-02	exome+100bp flanks	2	35954526	...	271	537	818	7.537299e-06	1.493553e-05	2.275096e-05	-4.643000e+00	...	3	32222400	...	9.310293e-08
TCGA-RP-A695-06A-11D-A30X-08	1101	1058	43	715	3.905540e-02	exome+100bp flanks	2	35954526	...	322	673	1020	8.955757e-06	1.871809e-05	2.836917e-05	-4.547153e+00	...	8	32222400	...	2.482745e-07
