[1] "ofn"        "-oTSTAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/15114286/STAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/15098840/transformed.cor.cli.txt"

nPatients in clinical file=443, in cluster file=441, common to both=441
[1]  89 441
[1] "AMP PEAK  1(1P36.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            66                            375 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            66                            375 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          160                           281 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          160                           281 
[1] "AMP PEAK  3(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          150                           291 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          150                           291 
[1] "AMP PEAK  4(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          164                           277 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          164                           277 
[1] "AMP PEAK  5(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           130                            311 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           130                            311 
[1] "AMP PEAK  6(5P13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                          126                           315 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                          126                           315 
[1] "AMP PEAK  7(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                          124                           317 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                          124                           317 
[1] "AMP PEAK  8(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         88                         353 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         88                         353 
[1] "AMP PEAK  9(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         82                         359 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         82                         359 
[1] "AMP PEAK 10(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          229                           212 
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          229                           212 
[1] "AMP PEAK 11(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          214                           227 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          214                           227 
[1] "AMP PEAK 12(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          204                           237 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          204                           237 
[1] "AMP PEAK 13(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE 
                          202                           239 
  AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE 
                          202                           239 
[1] "AMP PEAK 14(8P23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE 
                          177                           264 
  AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE 
                          177                           264 
[1] "AMP PEAK 15(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           309                            132 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           309                            132 
[1] "AMP PEAK 16(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE 
                           65                           376 
  AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE 
                           65                           376 
[1] "AMP PEAK 17(9P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE 
                           91                           350 
  AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE 
                           91                           350 
[1] "AMP PEAK 18(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE 
                          122                           319 
  AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE 
                          122                           319 
[1] "AMP PEAK 19(10P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE 
                            119                             322 
  AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE 
                            119                             322 
[1] "AMP PEAK 20(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE 
                            88                            353 
  AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE 
                            88                            353 
[1] "AMP PEAK 21(10Q26.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE 
                             88                             353 
  AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE 
                             88                             353 
[1] "AMP PEAK 22(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE 
                          88                          353 
  AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE 
                          88                          353 
[1] "AMP PEAK 23(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE 
                            92                            349 
  AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE 
                            92                            349 
[1] "AMP PEAK 24(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE 
                           115                            326 
  AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE 
                           115                            326 
[1] "AMP PEAK 25(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE 
                           128                            313 
  AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE 
                           128                            313 
[1] "AMP PEAK 26(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE 
                         109                          332 
  AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE 
                         109                          332 
[1] "AMP PEAK 27(13Q12.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE 
                           170                            271 
  AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE 
                           170                            271 
[1] "AMP PEAK 28(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE 
                           181                            260 
  AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE 
                           181                            260 
[1] "AMP PEAK 29(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE 
                           113                            328 
  AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE 
                           113                            328 
[1] "AMP PEAK 30(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE 
                         147                          294 
  AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE 
                         147                          294 
[1] "AMP PEAK 31(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE 
                           140                            301 
  AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE 
                           140                            301 
[1] "AMP PEAK 32(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE 
                            47                            394 
  AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE 
                            47                            394 
[1] "AMP PEAK 33(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE 
                         130                          311 
  AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE 
                         130                          311 
[1] "AMP PEAK 34(19Q13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE 
                            111                             330 
  AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE 
                            111                             330 
[1] "AMP PEAK 35(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE 
                           293                            148 
  AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE 
                           293                            148 
[1] "AMP PEAK 36(XQ27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE 
                           86                           355 
  AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE 
                           86                           355 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           135                            306 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           135                            306 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           94                           347 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           94                           347 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         30                         411 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         30                         411 
[1] "DEL PEAK  4(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE 
                         26                         415 
  DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE 
                         26                         415 
[1] "DEL PEAK  5(2Q32.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE 
                           64                           377 
  DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE 
                           64                           377 
[1] "DEL PEAK  6(2Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE 
                           49                           392 
  DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE 
                           49                           392 
[1] "DEL PEAK  7(2Q37.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE 
                           72                           369 
  DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE 
                           72                           369 
[1] "DEL PEAK  8(3P26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE 
                          143                           298 
  DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE 
                          143                           298 
[1] "DEL PEAK  9(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          158                           283 
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          158                           283 
[1] "DEL PEAK 10(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE 
                            47                            394 
  DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE 
                            47                            394 
[1] "DEL PEAK 11(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE 
                          169                           272 
  DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE 
                          169                           272 
[1] "DEL PEAK 12(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          193                           248 
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          193                           248 
[1] "DEL PEAK 13(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE 
                          200                           241 
  DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE 
                          200                           241 
[1] "DEL PEAK 14(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE 
                          170                           271 
  DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE 
                          170                           271 
[1] "DEL PEAK 15(5Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE 
                          158                           283 
  DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE 
                          158                           283 
[1] "DEL PEAK 16(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                          115                           326 
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                          115                           326 
[1] "DEL PEAK 17(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE 
                           89                           352 
  DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE 
                           89                           352 
[1] "DEL PEAK 18(6Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE 
                           78                           363 
  DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE 
                           78                           363 
[1] "DEL PEAK 19(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE 
                        102                         339 
  DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE 
                        102                         339 
[1] "DEL PEAK 20(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE 
                           71                           370 
  DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE 
                           71                           370 
[1] "DEL PEAK 21(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE 
                           98                           343 
  DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE 
                           98                           343 
[1] "DEL PEAK 22(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE 
                          126                           315 
  DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE 
                          126                           315 
[1] "DEL PEAK 23(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE 
                        195                         246 
  DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE 
                        195                         246 
[1] "DEL PEAK 24(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE 
                          193                           248 
  DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE 
                          193                           248 
[1] "DEL PEAK 25(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           114                            327 
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           114                            327 
[1] "DEL PEAK 26(10P12.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE 
                             67                             374 
  DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE 
                             67                             374 
[1] "DEL PEAK 27(10Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE 
                            79                            362 
  DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE 
                            79                            362 
[1] "DEL PEAK 28(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            116                             325 
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            116                             325 
[1] "DEL PEAK 29(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                            97                            344 
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                            97                            344 
[1] "DEL PEAK 30(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE 
                            99                            342 
  DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE 
                            99                            342 
[1] "DEL PEAK 31(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE 
                            77                            364 
  DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE 
                            77                            364 
[1] "DEL PEAK 32(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE 
                          59                          382 
  DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE 
                          59                          382 
[1] "DEL PEAK 33(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                             63                             378 
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                             63                             378 
[1] "DEL PEAK 34(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE 
                           136                            305 
  DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE 
                           136                            305 
[1] "DEL PEAK 35(14Q32.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE 
                            133                             308 
  DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE 
                            133                             308 
[1] "DEL PEAK 36(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE 
                           120                            321 
  DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE 
                           120                            321 
[1] "DEL PEAK 37(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE 
                           122                            319 
  DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE 
                           122                            319 
[1] "DEL PEAK 38(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE 
                            93                            348 
  DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE 
                            93                            348 
[1] "DEL PEAK 39(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           182                            259 
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           182                            259 
[1] "DEL PEAK 40(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE 
                           176                            265 
  DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE 
                           176                            265 
[1] "DEL PEAK 41(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE 
                         181                          260 
  DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE 
                         181                          260 
[1] "DEL PEAK 42(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE 
                            76                            365 
  DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE 
                            76                            365 
[1] "DEL PEAK 43(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE 
                           181                            260 
  DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE 
                           181                            260 
[1] "DEL PEAK 44(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE 
                           204                            237 
  DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE 
                           204                            237 
[1] "DEL PEAK 45(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE 
                           162                            279 
  DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE 
                           162                            279 
[1] "DEL PEAK 46(19Q13.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE 
                             75                             366 
  DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE 
                             75                             366 
[1] "DEL PEAK 47(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            39                            402 
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            39                            402 
[1] "DEL PEAK 48(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE 
                           183                            258 
  DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE 
                           183                            258 
[1] "DEL PEAK 49(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE 
                           193                            248 
  DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE 
                           193                            248 
[1] "DEL PEAK 50(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE 
                            161                             280 
  DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE 
                            161                             280 
[1] "DEL PEAK 51(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE 
                           85                           356 
  DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE 
                           85                           356 
[1] "DEL PEAK 52(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE 
                           74                           367 
  DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE 
                           74                           367 
[1] "DEL PEAK 53(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE 
                            56                            385 
  DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE 
                            56                            385 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 441 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 441 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED       38      6      4     16      2
  AMP PEAK  1(1P36.22) WILD-TYPE     85    181     32     60     17
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           38                             85
  CLUS_2                            6                            181
  CLUS_3                            4                             32
  CLUS_4                           16                             60
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.22) MUTATED       31     18      0      9
  AMP PEAK  1(1P36.22) WILD-TYPE     93    103     42     97
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           31                             93
  CLUS_2                           18                            103
  CLUS_3                            0                             42
  CLUS_4                            9                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       13      9     12
  AMP PEAK  1(1P36.22) WILD-TYPE     69     81     79
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           13                             69
  CLUS_2                            9                             81
  CLUS_3                           12                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.22) MUTATED        2     15      8      9
  AMP PEAK  1(1P36.22) WILD-TYPE     32     68     47     82
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            2                             32
  CLUS_2                           15                             68
  CLUS_3                            8                             47
  CLUS_4                            9                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED        2      2      6      6     16
  AMP PEAK  1(1P36.22) WILD-TYPE     63     60     40     31     46
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                            2                             60
  CLUS_3                            6                             40
  CLUS_4                            6                             31
  CLUS_5                           16                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P36.22) MUTATED        5      0      2     10      5      8
  AMP PEAK  1(1P36.22) WILD-TYPE     33     21     47     52     36     32
                                vv
clus                             CLUS_7
  AMP PEAK  1(1P36.22) MUTATED        2
  AMP PEAK  1(1P36.22) WILD-TYPE     19
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            5                             33
  CLUS_2                            0                             21
  CLUS_3                            2                             47
  CLUS_4                           10                             52
  CLUS_5                            5                             36
  CLUS_6                            8                             32
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       28     11     26
  AMP PEAK  1(1P36.22) WILD-TYPE    158    122     95
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           28                            158
  CLUS_2                           11                            122
  CLUS_3                           26                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.22) MUTATED       15     20      4     26
  AMP PEAK  1(1P36.22) WILD-TYPE     64    155     75     81
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           15                             64
  CLUS_2                           20                            155
  CLUS_3                            4                             75
  CLUS_4                           26                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P36.22) MUTATED       18      9      7      7      4      4
  AMP PEAK  1(1P36.22) WILD-TYPE     58     49     53     51     32     54
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           18                             58
  CLUS_2                            9                             49
  CLUS_3                            7                             53
  CLUS_4                            7                             51
  CLUS_5                            4                             32
  CLUS_6                            4                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       32      3     14
  AMP PEAK  1(1P36.22) WILD-TYPE    169     70     58
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           32                            169
  CLUS_2                            3                             70
  CLUS_3                           14                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       85     16     13     36     10
  AMP PEAK  2(1Q21.3) WILD-TYPE     38    171     23     40      9
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          85                            38
  CLUS_2                          16                           171
  CLUS_3                          13                            23
  CLUS_4                          36                            40
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       75     45      4     19
  AMP PEAK  2(1Q21.3) WILD-TYPE     49     76     38     87
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          75                            49
  CLUS_2                          45                            76
  CLUS_3                           4                            38
  CLUS_4                          19                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       34     23     38
  AMP PEAK  2(1Q21.3) WILD-TYPE     48     67     53
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          34                            48
  CLUS_2                          23                            67
  CLUS_3                          38                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       11     40     20     24
  AMP PEAK  2(1Q21.3) WILD-TYPE     23     43     35     67
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          11                            23
  CLUS_2                          40                            43
  CLUS_3                          20                            35
  CLUS_4                          24                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       12     10     16     13     47
  AMP PEAK  2(1Q21.3) WILD-TYPE     53     52     30     24     15
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          12                            53
  CLUS_2                          10                            52
  CLUS_3                          16                            30
  CLUS_4                          13                            24
  CLUS_5                          47                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       12      3      7     26     22     27
  AMP PEAK  2(1Q21.3) WILD-TYPE     26     18     42     36     19     13
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED        1
  AMP PEAK  2(1Q21.3) WILD-TYPE     20
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          12                            26
  CLUS_2                           3                            18
  CLUS_3                           7                            42
  CLUS_4                          26                            36
  CLUS_5                          22                            19
  CLUS_6                          27                            13
  CLUS_7                           1                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       56     30     73
  AMP PEAK  2(1Q21.3) WILD-TYPE    130    103     48
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          56                           130
  CLUS_2                          30                           103
  CLUS_3                          73                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       34     41     20     64
  AMP PEAK  2(1Q21.3) WILD-TYPE     45    134     59     43
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          34                            45
  CLUS_2                          41                           134
  CLUS_3                          20                            59
  CLUS_4                          64                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       46     18     15     17     14     10
  AMP PEAK  2(1Q21.3) WILD-TYPE     30     40     45     41     22     48
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          46                            30
  CLUS_2                          18                            40
  CLUS_3                          15                            45
  CLUS_4                          17                            41
  CLUS_5                          14                            22
  CLUS_6                          10                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       78     11     31
  AMP PEAK  2(1Q21.3) WILD-TYPE    123     62     41
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          78                           123
  CLUS_2                          11                            62
  CLUS_3                          31                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       80     18     11     33      8
  AMP PEAK  3(1Q42.3) WILD-TYPE     43    169     25     43     11
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          80                            43
  CLUS_2                          18                           169
  CLUS_3                          11                            25
  CLUS_4                          33                            43
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       70     36      5     23
  AMP PEAK  3(1Q42.3) WILD-TYPE     54     85     37     83
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          70                            54
  CLUS_2                          36                            85
  CLUS_3                           5                            37
  CLUS_4                          23                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       29     27     36
  AMP PEAK  3(1Q42.3) WILD-TYPE     53     63     55
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          29                            53
  CLUS_2                          27                            63
  CLUS_3                          36                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       11     38     15     28
  AMP PEAK  3(1Q42.3) WILD-TYPE     23     45     40     63
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          11                            23
  CLUS_2                          38                            45
  CLUS_3                          15                            40
  CLUS_4                          28                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       13     13     12     12     41
  AMP PEAK  3(1Q42.3) WILD-TYPE     52     49     34     25     21
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          13                            52
  CLUS_2                          13                            49
  CLUS_3                          12                            34
  CLUS_4                          12                            25
  CLUS_5                          41                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.3) MUTATED       12      3     10     20     20     24
  AMP PEAK  3(1Q42.3) WILD-TYPE     26     18     39     42     21     16
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q42.3) MUTATED        2
  AMP PEAK  3(1Q42.3) WILD-TYPE     19
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          12                            26
  CLUS_2                           3                            18
  CLUS_3                          10                            39
  CLUS_4                          20                            42
  CLUS_5                          20                            21
  CLUS_6                          24                            16
  CLUS_7                           2                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       40     37     73
  AMP PEAK  3(1Q42.3) WILD-TYPE    146     96     48
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          40                           146
  CLUS_2                          37                            96
  CLUS_3                          73                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       30     32     24     64
  AMP PEAK  3(1Q42.3) WILD-TYPE     49    143     55     43
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          30                            49
  CLUS_2                          32                           143
  CLUS_3                          24                            55
  CLUS_4                          64                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.3) MUTATED       43     12     16     17     16     11
  AMP PEAK  3(1Q42.3) WILD-TYPE     33     46     44     41     20     47
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          43                            33
  CLUS_2                          12                            46
  CLUS_3                          16                            44
  CLUS_4                          17                            41
  CLUS_5                          16                            20
  CLUS_6                          11                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       74     18     23
  AMP PEAK  3(1Q42.3) WILD-TYPE    127     55     49
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          74                           127
  CLUS_2                          18                            55
  CLUS_3                          23                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       64     32     11     44     13
  AMP PEAK  4(3Q26.2) WILD-TYPE     59    155     25     32      6
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          64                            59
  CLUS_2                          32                           155
  CLUS_3                          11                            25
  CLUS_4                          44                            32
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED       65     36     16     29
  AMP PEAK  4(3Q26.2) WILD-TYPE     59     85     26     77
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          65                            59
  CLUS_2                          36                            85
  CLUS_3                          16                            26
  CLUS_4                          29                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       26     32     31
  AMP PEAK  4(3Q26.2) WILD-TYPE     56     58     60
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          26                            56
  CLUS_2                          32                            58
  CLUS_3                          31                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED       15     26      9     39
  AMP PEAK  4(3Q26.2) WILD-TYPE     19     57     46     52
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          15                            19
  CLUS_2                          26                            57
  CLUS_3                           9                            46
  CLUS_4                          39                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       22     19     21     10     19
  AMP PEAK  4(3Q26.2) WILD-TYPE     43     43     25     27     43
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          22                            43
  CLUS_2                          19                            43
  CLUS_3                          21                            25
  CLUS_4                          10                            27
  CLUS_5                          19                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.2) MUTATED       13     11     10     30     10     13
  AMP PEAK  4(3Q26.2) WILD-TYPE     25     10     39     32     31     27
                               vv
clus                            CLUS_7
  AMP PEAK  4(3Q26.2) MUTATED        4
  AMP PEAK  4(3Q26.2) WILD-TYPE     17
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          13                            25
  CLUS_2                          11                            10
  CLUS_3                          10                            39
  CLUS_4                          30                            32
  CLUS_5                          10                            31
  CLUS_6                          13                            27
  CLUS_7                           4                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       63     41     60
  AMP PEAK  4(3Q26.2) WILD-TYPE    123     92     61
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          63                           123
  CLUS_2                          41                            92
  CLUS_3                          60                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED       27     62     22     53
  AMP PEAK  4(3Q26.2) WILD-TYPE     52    113     57     54
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          27                            52
  CLUS_2                          62                           113
  CLUS_3                          22                            57
  CLUS_4                          53                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.2) MUTATED       40     23     20     18     13     11
  AMP PEAK  4(3Q26.2) WILD-TYPE     36     35     40     40     23     47
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          40                            36
  CLUS_2                          23                            35
  CLUS_3                          20                            40
  CLUS_4                          18                            40
  CLUS_5                          13                            23
  CLUS_6                          11                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       81     16     28
  AMP PEAK  4(3Q26.2) WILD-TYPE    120     57     44
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          81                           120
  CLUS_2                          16                            57
  CLUS_3                          28                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED       77     18     10     20      5
  AMP PEAK  5(5P15.33) WILD-TYPE     46    169     26     56     14
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           77                             46
  CLUS_2                           18                            169
  CLUS_3                           10                             26
  CLUS_4                           20                             56
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED       70     22      7     18
  AMP PEAK  5(5P15.33) WILD-TYPE     54     99     35     88
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           70                             54
  CLUS_2                           22                             99
  CLUS_3                            7                             35
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       22     17     29
  AMP PEAK  5(5P15.33) WILD-TYPE     60     73     62
D5V3, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           22                             60
  CLUS_2                           17                             73
  CLUS_3                           29                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED        8     22     15     23
  AMP PEAK  5(5P15.33) WILD-TYPE     26     61     40     68
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            8                             26
  CLUS_2                           22                             61
  CLUS_3                           15                             40
  CLUS_4                           23                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED       11      6     10     10     38
  AMP PEAK  5(5P15.33) WILD-TYPE     54     56     36     27     24
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           11                             54
  CLUS_2                            6                             56
  CLUS_3                           10                             36
  CLUS_4                           10                             27
  CLUS_5                           38                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P15.33) MUTATED        7      5      6     16     16     23
  AMP PEAK  5(5P15.33) WILD-TYPE     31     16     43     46     25     17
                                vv
clus                             CLUS_7
  AMP PEAK  5(5P15.33) MUTATED        2
  AMP PEAK  5(5P15.33) WILD-TYPE     19
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                            5                             16
  CLUS_3                            6                             43
  CLUS_4                           16                             46
  CLUS_5                           16                             25
  CLUS_6                           23                             17
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       49     22     58
  AMP PEAK  5(5P15.33) WILD-TYPE    137    111     63
D5V7, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           49                            137
  CLUS_2                           22                            111
  CLUS_3                           58                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED       17     41     15     56
  AMP PEAK  5(5P15.33) WILD-TYPE     62    134     64     51
D5V8, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           17                             62
  CLUS_2                           41                            134
  CLUS_3                           15                             64
  CLUS_4                           56                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P15.33) MUTATED       35     13     19     18     12      6
  AMP PEAK  5(5P15.33) WILD-TYPE     41     45     41     40     24     52
D5V9, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           35                             41
  CLUS_2                           13                             45
  CLUS_3                           19                             41
  CLUS_4                           18                             40
  CLUS_5                           12                             24
  CLUS_6                            6                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       70      9     24
  AMP PEAK  5(5P15.33) WILD-TYPE    131     64     48
D5V10, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           70                            131
  CLUS_2                            9                             64
  CLUS_3                           24                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       73     17     10     21      5
  AMP PEAK  6(5P13.1) WILD-TYPE     50    170     26     55     14
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          73                            50
  CLUS_2                          17                           170
  CLUS_3                          10                            26
  CLUS_4                          21                            55
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED       61     23      7     20
  AMP PEAK  6(5P13.1) WILD-TYPE     63     98     35     86
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          61                            63
  CLUS_2                          23                            98
  CLUS_3                           7                            35
  CLUS_4                          20                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       20     23     27
  AMP PEAK  6(5P13.1) WILD-TYPE     62     67     64
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          20                            62
  CLUS_2                          23                            67
  CLUS_3                          27                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED        8     22     13     27
  AMP PEAK  6(5P13.1) WILD-TYPE     26     61     42     64
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           8                            26
  CLUS_2                          22                            61
  CLUS_3                          13                            42
  CLUS_4                          27                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       11      8     10      9     37
  AMP PEAK  6(5P13.1) WILD-TYPE     54     54     36     28     25
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                           8                            54
  CLUS_3                          10                            36
  CLUS_4                           9                            28
  CLUS_5                          37                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P13.1) MUTATED        9      4      7     17     14     22
  AMP PEAK  6(5P13.1) WILD-TYPE     29     17     42     45     27     18
                               vv
clus                            CLUS_7
  AMP PEAK  6(5P13.1) MUTATED        2
  AMP PEAK  6(5P13.1) WILD-TYPE     19
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           9                            29
  CLUS_2                           4                            17
  CLUS_3                           7                            42
  CLUS_4                          17                            45
  CLUS_5                          14                            27
  CLUS_6                          22                            18
  CLUS_7                           2                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       44     28     54
  AMP PEAK  6(5P13.1) WILD-TYPE    142    105     67
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          44                           142
  CLUS_2                          28                           105
  CLUS_3                          54                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED       16     37     18     55
  AMP PEAK  6(5P13.1) WILD-TYPE     63    138     61     52
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          16                            63
  CLUS_2                          37                           138
  CLUS_3                          18                            61
  CLUS_4                          55                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P13.1) MUTATED       31     12     16     19     13      9
  AMP PEAK  6(5P13.1) WILD-TYPE     45     46     44     39     23     49
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          31                            45
  CLUS_2                          12                            46
  CLUS_3                          16                            44
  CLUS_4                          19                            39
  CLUS_5                          13                            23
  CLUS_6                           9                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       68     13     19
  AMP PEAK  6(5P13.1) WILD-TYPE    133     60     53
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          68                           133
  CLUS_2                          13                            60
  CLUS_3                          19                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       79      8      5     25      7
  AMP PEAK  7(6P21.1) WILD-TYPE     44    179     31     51     12
D7V1, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          79                            44
  CLUS_2                           8                           179
  CLUS_3                           5                            31
  CLUS_4                          25                            51
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6P21.1) MUTATED       71     27      1      9
  AMP PEAK  7(6P21.1) WILD-TYPE     53     94     41     97
D7V2, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          71                            53
  CLUS_2                          27                            94
  CLUS_3                           1                            41
  CLUS_4                           9                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P21.1) MUTATED       22     20     29
  AMP PEAK  7(6P21.1) WILD-TYPE     60     70     62
D7V3, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          22                            60
  CLUS_2                          20                            70
  CLUS_3                          29                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6P21.1) MUTATED       13     25     11     22
  AMP PEAK  7(6P21.1) WILD-TYPE     21     58     44     69
D7V4, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          13                            21
  CLUS_2                          25                            58
  CLUS_3                          11                            44
  CLUS_4                          22                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       10     10     10     11     30
  AMP PEAK  7(6P21.1) WILD-TYPE     55     52     36     26     32
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          10                            55
  CLUS_2                          10                            52
  CLUS_3                          10                            36
  CLUS_4                          11                            26
  CLUS_5                          30                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6P21.1) MUTATED       10      1      5     17     15     20
  AMP PEAK  7(6P21.1) WILD-TYPE     28     20     44     45     26     20
                               vv
clus                            CLUS_7
  AMP PEAK  7(6P21.1) MUTATED        3
  AMP PEAK  7(6P21.1) WILD-TYPE     18
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          10                            28
  CLUS_2                           1                            20
  CLUS_3                           5                            44
  CLUS_4                          17                            45
  CLUS_5                          15                            26
  CLUS_6                          20                            20
  CLUS_7                           3                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P21.1) MUTATED       46     19     58
  AMP PEAK  7(6P21.1) WILD-TYPE    140    114     63
D7V7, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          46                           140
  CLUS_2                          19                           114
  CLUS_3                          58                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6P21.1) MUTATED       29     29     13     52
  AMP PEAK  7(6P21.1) WILD-TYPE     50    146     66     55
D7V8, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          29                           146
  CLUS_3                          13                            66
  CLUS_4                          52                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6P21.1) MUTATED       38     11     13     17     12      8
  AMP PEAK  7(6P21.1) WILD-TYPE     38     47     47     41     24     50
D7V9, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          38                            38
  CLUS_2                          11                            47
  CLUS_3                          13                            47
  CLUS_4                          17                            41
  CLUS_5                          12                            24
  CLUS_6                           8                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P21.1) MUTATED       67      8     24
  AMP PEAK  7(6P21.1) WILD-TYPE    134     65     48
D7V10, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          67                           134
  CLUS_2                           8                            65
  CLUS_3                          24                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED       59      9      4     13      3
  AMP PEAK  8(6Q12) WILD-TYPE     64    178     32     63     16
D8V1, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        59                          64
  CLUS_2                         9                         178
  CLUS_3                         4                          32
  CLUS_4                        13                          63
  CLUS_5                         3                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6Q12) MUTATED       48     18      1      7
  AMP PEAK  8(6Q12) WILD-TYPE     76    103     41     99
D8V2, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        48                          76
  CLUS_2                        18                         103
  CLUS_3                         1                          41
  CLUS_4                         7                          99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q12) MUTATED       18     11     23
  AMP PEAK  8(6Q12) WILD-TYPE     64     79     68
D8V3, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        18                          64
  CLUS_2                        11                          79
  CLUS_3                        23                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6Q12) MUTATED        6     19     10     17
  AMP PEAK  8(6Q12) WILD-TYPE     28     64     45     74
D8V4, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         6                          28
  CLUS_2                        19                          64
  CLUS_3                        10                          45
  CLUS_4                        17                          74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED        6      7      9      6     26
  AMP PEAK  8(6Q12) WILD-TYPE     59     55     37     31     36
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         6                          59
  CLUS_2                         7                          55
  CLUS_3                         9                          37
  CLUS_4                         6                          31
  CLUS_5                        26                          36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(6Q12) MUTATED        7      1      3     12     12     17      2
  AMP PEAK  8(6Q12) WILD-TYPE     31     20     46     50     29     23     19
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         7                          31
  CLUS_2                         1                          20
  CLUS_3                         3                          46
  CLUS_4                        12                          50
  CLUS_5                        12                          29
  CLUS_6                        17                          23
  CLUS_7                         2                          19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q12) MUTATED       30     15     42
  AMP PEAK  8(6Q12) WILD-TYPE    156    118     79
D8V7, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        30                         156
  CLUS_2                        15                         118
  CLUS_3                        42                          79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6Q12) MUTATED       22     17     10     38
  AMP PEAK  8(6Q12) WILD-TYPE     57    158     69     69
D8V8, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        22                          57
  CLUS_2                        17                         158
  CLUS_3                        10                          69
  CLUS_4                        38                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6Q12) MUTATED       32      6      6      9      8      5
  AMP PEAK  8(6Q12) WILD-TYPE     44     52     54     49     28     53
D8V9, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        32                          44
  CLUS_2                         6                          52
  CLUS_3                         6                          54
  CLUS_4                         9                          49
  CLUS_5                         8                          28
  CLUS_6                         5                          53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q12) MUTATED       47      6     13
  AMP PEAK  8(6Q12) WILD-TYPE    154     67     59
D8V10, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        47                         154
  CLUS_2                         6                          67
  CLUS_3                        13                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       52      8      4     16      2
  AMP PEAK  9(6Q21) WILD-TYPE     71    179     32     60     17
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        52                          71
  CLUS_2                         8                         179
  CLUS_3                         4                          32
  CLUS_4                        16                          60
  CLUS_5                         2                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED       42     18      1      8
  AMP PEAK  9(6Q21) WILD-TYPE     82    103     41     98
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        42                          82
  CLUS_2                        18                         103
  CLUS_3                         1                          41
  CLUS_4                         8                          98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       14     15     22
  AMP PEAK  9(6Q21) WILD-TYPE     68     75     69
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        14                          68
  CLUS_2                        15                          75
  CLUS_3                        22                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED        5     21      8     17
  AMP PEAK  9(6Q21) WILD-TYPE     29     62     47     74
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         5                          29
  CLUS_2                        21                          62
  CLUS_3                         8                          47
  CLUS_4                        17                          74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED        7      7      8      5     23
  AMP PEAK  9(6Q21) WILD-TYPE     58     55     38     32     39
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         7                          58
  CLUS_2                         7                          55
  CLUS_3                         8                          38
  CLUS_4                         5                          32
  CLUS_5                        23                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  9(6Q21) MUTATED        8      1      4     10     10     16      1
  AMP PEAK  9(6Q21) WILD-TYPE     30     20     45     52     31     24     20
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         8                          30
  CLUS_2                         1                          20
  CLUS_3                         4                          45
  CLUS_4                        10                          52
  CLUS_5                        10                          31
  CLUS_6                        16                          24
  CLUS_7                         1                          20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       29     11     41
  AMP PEAK  9(6Q21) WILD-TYPE    157    122     80
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        29                         157
  CLUS_2                        11                         122
  CLUS_3                        41                          80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED       16     19      7     39
  AMP PEAK  9(6Q21) WILD-TYPE     63    156     72     68
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        16                          63
  CLUS_2                        19                         156
  CLUS_3                         7                          72
  CLUS_4                        39                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       27      7      6      7      9      5
  AMP PEAK  9(6Q21) WILD-TYPE     49     51     54     51     27     53
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        27                          49
  CLUS_2                         7                          51
  CLUS_3                         6                          54
  CLUS_4                         7                          51
  CLUS_5                         9                          27
  CLUS_6                         5                          53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       44      3     14
  AMP PEAK  9(6Q21) WILD-TYPE    157     70     58
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        44                         157
  CLUS_2                         3                          70
  CLUS_3                        14                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       88     51     34     46     10
  AMP PEAK 10(7P22.1) WILD-TYPE     35    136      2     30      9
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          88                            35
  CLUS_2                          51                           136
  CLUS_3                          34                             2
  CLUS_4                          46                            30
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       83     68     19     34
  AMP PEAK 10(7P22.1) WILD-TYPE     41     53     23     72
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          83                            41
  CLUS_2                          68                            53
  CLUS_3                          19                            23
  CLUS_4                          34                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       43     44     51
  AMP PEAK 10(7P22.1) WILD-TYPE     39     46     40
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          43                            39
  CLUS_2                          44                            46
  CLUS_3                          51                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       20     44     29     45
  AMP PEAK 10(7P22.1) WILD-TYPE     14     39     26     46
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          20                            14
  CLUS_2                          44                            39
  CLUS_3                          29                            26
  CLUS_4                          45                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       29     25     16     20     46
  AMP PEAK 10(7P22.1) WILD-TYPE     36     37     30     17     16
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          29                            36
  CLUS_2                          25                            37
  CLUS_3                          16                            30
  CLUS_4                          20                            17
  CLUS_5                          46                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P22.1) MUTATED       16     11     15     31     30     29
  AMP PEAK 10(7P22.1) WILD-TYPE     22     10     34     31     11     11
                               vv
clus                            CLUS_7
  AMP PEAK 10(7P22.1) MUTATED        4
  AMP PEAK 10(7P22.1) WILD-TYPE     17
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          16                            22
  CLUS_2                          11                            10
  CLUS_3                          15                            34
  CLUS_4                          31                            31
  CLUS_5                          30                            11
  CLUS_6                          29                            11
  CLUS_7                           4                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       98     55     75
  AMP PEAK 10(7P22.1) WILD-TYPE     88     78     46
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          98                            88
  CLUS_2                          55                            78
  CLUS_3                          75                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       46     79     30     73
  AMP PEAK 10(7P22.1) WILD-TYPE     33     96     49     34
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          46                            33
  CLUS_2                          79                            96
  CLUS_3                          30                            49
  CLUS_4                          73                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P22.1) MUTATED       47     28     29     29     23     21
  AMP PEAK 10(7P22.1) WILD-TYPE     29     30     31     29     13     37
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          47                            29
  CLUS_2                          28                            30
  CLUS_3                          29                            31
  CLUS_4                          29                            29
  CLUS_5                          23                            13
  CLUS_6                          21                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED      112     24     41
  AMP PEAK 10(7P22.1) WILD-TYPE     89     49     31
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                         112                            89
  CLUS_2                          24                            49
  CLUS_3                          41                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       74     48     35     46     11
  AMP PEAK 11(7P11.2) WILD-TYPE     49    139      1     30      8
D11V1, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          74                            49
  CLUS_2                          48                           139
  CLUS_3                          35                             1
  CLUS_4                          46                            30
  CLUS_5                          11                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       76     64     19     32
  AMP PEAK 11(7P11.2) WILD-TYPE     48     57     23     74
D11V2, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          76                            48
  CLUS_2                          64                            57
  CLUS_3                          19                            23
  CLUS_4                          32                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       37     41     44
  AMP PEAK 11(7P11.2) WILD-TYPE     45     49     47
D11V3, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          37                            45
  CLUS_2                          41                            49
  CLUS_3                          44                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       18     37     26     41
  AMP PEAK 11(7P11.2) WILD-TYPE     16     46     29     50
D11V4, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          18                            16
  CLUS_2                          37                            46
  CLUS_3                          26                            29
  CLUS_4                          41                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       28     24     15     19     37
  AMP PEAK 11(7P11.2) WILD-TYPE     37     38     31     18     25
D11V5, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          28                            37
  CLUS_2                          24                            38
  CLUS_3                          15                            31
  CLUS_4                          19                            18
  CLUS_5                          37                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED       15     11     15     29     28     22
  AMP PEAK 11(7P11.2) WILD-TYPE     23     10     34     33     13     18
                               vv
clus                            CLUS_7
  AMP PEAK 11(7P11.2) MUTATED        3
  AMP PEAK 11(7P11.2) WILD-TYPE     18
D11V6, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          15                            23
  CLUS_2                          11                            10
  CLUS_3                          15                            34
  CLUS_4                          29                            33
  CLUS_5                          28                            13
  CLUS_6                          22                            18
  CLUS_7                           3                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       92     53     68
  AMP PEAK 11(7P11.2) WILD-TYPE     94     80     53
D11V7, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          92                            94
  CLUS_2                          53                            80
  CLUS_3                          68                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       41     78     28     66
  AMP PEAK 11(7P11.2) WILD-TYPE     38     97     51     41
D11V8, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          41                            38
  CLUS_2                          78                            97
  CLUS_3                          28                            51
  CLUS_4                          66                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED       44     29     27     24     20     20
  AMP PEAK 11(7P11.2) WILD-TYPE     32     29     33     34     16     38
D11V9, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          44                            32
  CLUS_2                          29                            29
  CLUS_3                          27                            33
  CLUS_4                          24                            34
  CLUS_5                          20                            16
  CLUS_6                          20                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED      102     22     40
  AMP PEAK 11(7P11.2) WILD-TYPE     99     51     32
D11V10, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                         102                            99
  CLUS_2                          22                            51
  CLUS_3                          40                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       63     50     36     43     12
  AMP PEAK 12(7Q21.2) WILD-TYPE     60    137      0     33      7
D12V1, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          63                            60
  CLUS_2                          50                           137
  CLUS_3                          36                             0
  CLUS_4                          43                            33
  CLUS_5                          12                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       74     54     20     31
  AMP PEAK 12(7Q21.2) WILD-TYPE     50     67     22     75
D12V2, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          74                            50
  CLUS_2                          54                            67
  CLUS_3                          20                            22
  CLUS_4                          31                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       39     35     47
  AMP PEAK 12(7Q21.2) WILD-TYPE     43     55     44
D12V3, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          39                            43
  CLUS_2                          35                            55
  CLUS_3                          47                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       17     39     27     38
  AMP PEAK 12(7Q21.2) WILD-TYPE     17     44     28     53
D12V4, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          17                            17
  CLUS_2                          39                            44
  CLUS_3                          27                            28
  CLUS_4                          38                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       28     24     17     20     30
  AMP PEAK 12(7Q21.2) WILD-TYPE     37     38     29     17     32
D12V5, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          28                            37
  CLUS_2                          24                            38
  CLUS_3                          17                            29
  CLUS_4                          20                            17
  CLUS_5                          30                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       14     13     14     26     30     19
  AMP PEAK 12(7Q21.2) WILD-TYPE     24      8     35     36     11     21
                               vv
clus                            CLUS_7
  AMP PEAK 12(7Q21.2) MUTATED        3
  AMP PEAK 12(7Q21.2) WILD-TYPE     18
D12V6, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          14                            24
  CLUS_2                          13                             8
  CLUS_3                          14                            35
  CLUS_4                          26                            36
  CLUS_5                          30                            11
  CLUS_6                          19                            21
  CLUS_7                           3                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       91     49     63
  AMP PEAK 12(7Q21.2) WILD-TYPE     95     84     58
D12V7, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          91                            95
  CLUS_2                          49                            84
  CLUS_3                          63                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       46     71     27     59
  AMP PEAK 12(7Q21.2) WILD-TYPE     33    104     52     48
D12V8, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          46                            33
  CLUS_2                          71                           104
  CLUS_3                          27                            52
  CLUS_4                          59                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       40     24     29     23     20     18
  AMP PEAK 12(7Q21.2) WILD-TYPE     36     34     31     35     16     40
D12V9, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          40                            36
  CLUS_2                          24                            34
  CLUS_3                          29                            31
  CLUS_4                          23                            35
  CLUS_5                          20                            16
  CLUS_6                          18                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       99     21     34
  AMP PEAK 12(7Q21.2) WILD-TYPE    102     52     38
D12V10, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          99                           102
  CLUS_2                          21                            52
  CLUS_3                          34                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       62     51     36     40     13
  AMP PEAK 13(7Q22.1) WILD-TYPE     61    136      0     36      6
D13V1, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          62                            61
  CLUS_2                          51                           136
  CLUS_3                          36                             0
  CLUS_4                          40                            36
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q22.1) MUTATED       71     55     20     32
  AMP PEAK 13(7Q22.1) WILD-TYPE     53     66     22     74
D13V2, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          71                            53
  CLUS_2                          55                            66
  CLUS_3                          20                            22
  CLUS_4                          32                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q22.1) MUTATED       37     35     47
  AMP PEAK 13(7Q22.1) WILD-TYPE     45     55     44
D13V3, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          37                            45
  CLUS_2                          35                            55
  CLUS_3                          47                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q22.1) MUTATED       17     37     26     39
  AMP PEAK 13(7Q22.1) WILD-TYPE     17     46     29     52
D13V4, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          17                            17
  CLUS_2                          37                            46
  CLUS_3                          26                            29
  CLUS_4                          39                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       29     26     17     19     26
  AMP PEAK 13(7Q22.1) WILD-TYPE     36     36     29     18     36
D13V5, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          29                            36
  CLUS_2                          26                            36
  CLUS_3                          17                            29
  CLUS_4                          19                            18
  CLUS_5                          26                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(7Q22.1) MUTATED       12     13     16     26     27     19
  AMP PEAK 13(7Q22.1) WILD-TYPE     26      8     33     36     14     21
                               vv
clus                            CLUS_7
  AMP PEAK 13(7Q22.1) MUTATED        4
  AMP PEAK 13(7Q22.1) WILD-TYPE     17
D13V6, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          12                            26
  CLUS_2                          13                             8
  CLUS_3                          16                            33
  CLUS_4                          26                            36
  CLUS_5                          27                            14
  CLUS_6                          19                            21
  CLUS_7                           4                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q22.1) MUTATED       88     51     62
  AMP PEAK 13(7Q22.1) WILD-TYPE     98     82     59
D13V7, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          88                            98
  CLUS_2                          51                            82
  CLUS_3                          62                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q22.1) MUTATED       42     72     29     58
  AMP PEAK 13(7Q22.1) WILD-TYPE     37    103     50     49
D13V8, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          42                            37
  CLUS_2                          72                           103
  CLUS_3                          29                            50
  CLUS_4                          58                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(7Q22.1) MUTATED       40     25     27     25     20     18
  AMP PEAK 13(7Q22.1) WILD-TYPE     36     33     33     33     16     40
D13V9, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          40                            36
  CLUS_2                          25                            33
  CLUS_3                          27                            33
  CLUS_4                          25                            33
  CLUS_5                          20                            16
  CLUS_6                          18                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q22.1) MUTATED       97     22     36
  AMP PEAK 13(7Q22.1) WILD-TYPE    104     51     36
D13V10, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          97                           104
  CLUS_2                          22                            51
  CLUS_3                          36                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED       36     82     15     25     19
  AMP PEAK 14(8P23.1) WILD-TYPE     87    105     21     51      0
D14V1, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          36                            87
  CLUS_2                          82                           105
  CLUS_3                          15                            21
  CLUS_4                          25                            51
  CLUS_5                          19                             0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P23.1) MUTATED       36     67     16     35
  AMP PEAK 14(8P23.1) WILD-TYPE     88     54     26     71
D14V2, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          36                            88
  CLUS_2                          67                            54
  CLUS_3                          16                            26
  CLUS_4                          35                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P23.1) MUTATED       30     38     32
  AMP PEAK 14(8P23.1) WILD-TYPE     52     52     59
D14V3, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          30                            52
  CLUS_2                          38                            52
  CLUS_3                          32                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P23.1) MUTATED       16     32     18     34
  AMP PEAK 14(8P23.1) WILD-TYPE     18     51     37     57
D14V4, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          16                            18
  CLUS_2                          32                            51
  CLUS_3                          18                            37
  CLUS_4                          34                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED       32     25     20     15     15
  AMP PEAK 14(8P23.1) WILD-TYPE     33     37     26     22     47
D14V5, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          32                            33
  CLUS_2                          25                            37
  CLUS_3                          20                            26
  CLUS_4                          15                            22
  CLUS_5                          15                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8P23.1) MUTATED       14      7     22     28     14      8
  AMP PEAK 14(8P23.1) WILD-TYPE     24     14     27     34     27     32
                               vv
clus                            CLUS_7
  AMP PEAK 14(8P23.1) MUTATED       14
  AMP PEAK 14(8P23.1) WILD-TYPE      7
D14V6, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          14                            24
  CLUS_2                           7                            14
  CLUS_3                          22                            27
  CLUS_4                          28                            34
  CLUS_5                          14                            27
  CLUS_6                           8                            32
  CLUS_7                          14                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P23.1) MUTATED       85     48     44
  AMP PEAK 14(8P23.1) WILD-TYPE    101     85     77
D14V7, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          85                           101
  CLUS_2                          48                            85
  CLUS_3                          44                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P23.1) MUTATED       42     68     30     37
  AMP PEAK 14(8P23.1) WILD-TYPE     37    107     49     70
D14V8, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          42                            37
  CLUS_2                          68                           107
  CLUS_3                          30                            49
  CLUS_4                          37                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8P23.1) MUTATED       25     31     23     22     17     18
  AMP PEAK 14(8P23.1) WILD-TYPE     51     27     37     36     19     40
D14V9, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          25                            51
  CLUS_2                          31                            27
  CLUS_3                          23                            37
  CLUS_4                          22                            36
  CLUS_5                          17                            19
  CLUS_6                          18                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P23.1) MUTATED       69     31     36
  AMP PEAK 14(8P23.1) WILD-TYPE    132     42     36
D14V10, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          69                           132
  CLUS_2                          31                            42
  CLUS_3                          36                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED      111    107     24     49     18
  AMP PEAK 15(8Q24.21) WILD-TYPE     12     80     12     27      1
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          111                             12
  CLUS_2                          107                             80
  CLUS_3                           24                             12
  CLUS_4                           49                             27
  CLUS_5                           18                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED      103     92     18     59
  AMP PEAK 15(8Q24.21) WILD-TYPE     21     29     24     47
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          103                             21
  CLUS_2                           92                             29
  CLUS_3                           18                             24
  CLUS_4                           59                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       56     54     63
  AMP PEAK 15(8Q24.21) WILD-TYPE     26     36     28
D15V3, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           56                             26
  CLUS_2                           54                             36
  CLUS_3                           63                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       26     50     38     59
  AMP PEAK 15(8Q24.21) WILD-TYPE      8     33     17     32
D15V4, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           26                              8
  CLUS_2                           50                             33
  CLUS_3                           38                             17
  CLUS_4                           59                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       42     36     23     23     51
  AMP PEAK 15(8Q24.21) WILD-TYPE     23     26     23     14     11
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           42                             23
  CLUS_2                           36                             26
  CLUS_3                           23                             23
  CLUS_4                           23                             14
  CLUS_5                           51                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       22      9     28     37     29     34
  AMP PEAK 15(8Q24.21) WILD-TYPE     16     12     21     25     12      6
                                vv
clus                             CLUS_7
  AMP PEAK 15(8Q24.21) MUTATED       16
  AMP PEAK 15(8Q24.21) WILD-TYPE      5
D15V6, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           22                             16
  CLUS_2                            9                             12
  CLUS_3                           28                             21
  CLUS_4                           37                             25
  CLUS_5                           29                             12
  CLUS_6                           34                              6
  CLUS_7                           16                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED      130     75    103
  AMP PEAK 15(8Q24.21) WILD-TYPE     56     58     18
D15V7, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          130                             56
  CLUS_2                           75                             58
  CLUS_3                          103                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       64    106     47     91
  AMP PEAK 15(8Q24.21) WILD-TYPE     15     69     32     16
D15V8, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           64                             15
  CLUS_2                          106                             69
  CLUS_3                           47                             32
  CLUS_4                           91                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       64     45     41     36     25     29
  AMP PEAK 15(8Q24.21) WILD-TYPE     12     13     19     22     11     29
D15V9, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           64                             12
  CLUS_2                           45                             13
  CLUS_3                           41                             19
  CLUS_4                           36                             22
  CLUS_5                           25                             11
  CLUS_6                           29                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED      147     39     54
  AMP PEAK 15(8Q24.21) WILD-TYPE     54     34     18
D15V10, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          147                             54
  CLUS_2                           39                             34
  CLUS_3                           54                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED       30     29      3      1      2
  AMP PEAK 16(9P24.1) WILD-TYPE     93    158     33     75     17
D16V1, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          30                            93
  CLUS_2                          29                           158
  CLUS_3                           3                            33
  CLUS_4                           1                            75
  CLUS_5                           2                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P24.1) MUTATED       21     15     11     11
  AMP PEAK 16(9P24.1) WILD-TYPE    103    106     31     95
D16V2, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          21                           103
  CLUS_2                          15                           106
  CLUS_3                          11                            31
  CLUS_4                          11                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P24.1) MUTATED       13     12     17
  AMP PEAK 16(9P24.1) WILD-TYPE     69     78     74
D16V3, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          13                            69
  CLUS_2                          12                            78
  CLUS_3                          17                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P24.1) MUTATED        8     11     12     11
  AMP PEAK 16(9P24.1) WILD-TYPE     26     72     43     80
D16V4, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                           8                            26
  CLUS_2                          11                            72
  CLUS_3                          12                            43
  CLUS_4                          11                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED       13      4      7      6     14
  AMP PEAK 16(9P24.1) WILD-TYPE     52     58     39     31     48
D16V5, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          13                            52
  CLUS_2                           4                            58
  CLUS_3                           7                            39
  CLUS_4                           6                            31
  CLUS_5                          14                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9P24.1) MUTATED        7      7      1     10      5     11
  AMP PEAK 16(9P24.1) WILD-TYPE     31     14     48     52     36     29
                               vv
clus                            CLUS_7
  AMP PEAK 16(9P24.1) MUTATED        3
  AMP PEAK 16(9P24.1) WILD-TYPE     18
D16V6, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                           7                            31
  CLUS_2                           7                            14
  CLUS_3                           1                            48
  CLUS_4                          10                            52
  CLUS_5                           5                            36
  CLUS_6                          11                            29
  CLUS_7                           3                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P24.1) MUTATED       26     13     26
  AMP PEAK 16(9P24.1) WILD-TYPE    160    120     95
D16V7, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          26                           160
  CLUS_2                          13                           120
  CLUS_3                          26                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P24.1) MUTATED        8     28      9     20
  AMP PEAK 16(9P24.1) WILD-TYPE     71    147     70     87
D16V8, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                           8                            71
  CLUS_2                          28                           147
  CLUS_3                           9                            70
  CLUS_4                          20                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9P24.1) MUTATED       18      6      7      9      4      3
  AMP PEAK 16(9P24.1) WILD-TYPE     58     52     53     49     32     55
D16V9, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          18                            58
  CLUS_2                           6                            52
  CLUS_3                           7                            53
  CLUS_4                           9                            49
  CLUS_5                           4                            32
  CLUS_6                           3                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P24.1) MUTATED       30      5     12
  AMP PEAK 16(9P24.1) WILD-TYPE    171     68     60
D16V10, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          30                           171
  CLUS_2                           5                            68
  CLUS_3                          12                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(9P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       43     28      5     11      4
  AMP PEAK 17(9P13.2) WILD-TYPE     80    159     31     65     15
D17V1, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          43                            80
  CLUS_2                          28                           159
  CLUS_3                           5                            31
  CLUS_4                          11                            65
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9P13.2) MUTATED       32     25      5     21
  AMP PEAK 17(9P13.2) WILD-TYPE     92     96     37     85
D17V2, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          32                            92
  CLUS_2                          25                            96
  CLUS_3                           5                            37
  CLUS_4                          21                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9P13.2) MUTATED       11     18     19
  AMP PEAK 17(9P13.2) WILD-TYPE     71     72     72
D17V3, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          11                            71
  CLUS_2                          18                            72
  CLUS_3                          19                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9P13.2) MUTATED        6     20     10     12
  AMP PEAK 17(9P13.2) WILD-TYPE     28     63     45     79
D17V4, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                           6                            28
  CLUS_2                          20                            63
  CLUS_3                          10                            45
  CLUS_4                          12                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       11      3     11      9     14
  AMP PEAK 17(9P13.2) WILD-TYPE     54     59     35     28     48
D17V5, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                           3                            59
  CLUS_3                          11                            35
  CLUS_4                           9                            28
  CLUS_5                          14                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(9P13.2) MUTATED        6      4      3     13      8     10
  AMP PEAK 17(9P13.2) WILD-TYPE     32     17     46     49     33     30
                               vv
clus                            CLUS_7
  AMP PEAK 17(9P13.2) MUTATED        4
  AMP PEAK 17(9P13.2) WILD-TYPE     17
D17V6, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                           6                            32
  CLUS_2                           4                            17
  CLUS_3                           3                            46
  CLUS_4                          13                            49
  CLUS_5                           8                            33
  CLUS_6                          10                            30
  CLUS_7                           4                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9P13.2) MUTATED       38     20     33
  AMP PEAK 17(9P13.2) WILD-TYPE    148    113     88
D17V7, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          38                           148
  CLUS_2                          20                           113
  CLUS_3                          33                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9P13.2) MUTATED       15     34     13     29
  AMP PEAK 17(9P13.2) WILD-TYPE     64    141     66     78
D17V8, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          15                            64
  CLUS_2                          34                           141
  CLUS_3                          13                            66
  CLUS_4                          29                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(9P13.2) MUTATED       28     13      9     13      5      5
  AMP PEAK 17(9P13.2) WILD-TYPE     48     45     51     45     31     53
D17V9, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          28                            48
  CLUS_2                          13                            45
  CLUS_3                           9                            51
  CLUS_4                          13                            45
  CLUS_5                           5                            31
  CLUS_6                           5                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9P13.2) MUTATED       45     10     18
  AMP PEAK 17(9P13.2) WILD-TYPE    156     63     54
D17V10, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          45                           156
  CLUS_2                          10                            63
  CLUS_3                          18                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       52     31     13     19      7
  AMP PEAK 18(9Q34.3) WILD-TYPE     71    156     23     57     12
D18V1, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          52                            71
  CLUS_2                          31                           156
  CLUS_3                          13                            23
  CLUS_4                          19                            57
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9Q34.3) MUTATED       47     32      7     23
  AMP PEAK 18(9Q34.3) WILD-TYPE     77     89     35     83
D18V2, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          47                            77
  CLUS_2                          32                            89
  CLUS_3                           7                            35
  CLUS_4                          23                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9Q34.3) MUTATED       19     22     26
  AMP PEAK 18(9Q34.3) WILD-TYPE     63     68     65
D18V3, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          19                            63
  CLUS_2                          22                            68
  CLUS_3                          26                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9Q34.3) MUTATED        8     26     14     19
  AMP PEAK 18(9Q34.3) WILD-TYPE     26     57     41     72
D18V4, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                           8                            26
  CLUS_2                          26                            57
  CLUS_3                          14                            41
  CLUS_4                          19                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       14      7     11     10     21
  AMP PEAK 18(9Q34.3) WILD-TYPE     51     55     35     27     41
D18V5, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          14                            51
  CLUS_2                           7                            55
  CLUS_3                          11                            35
  CLUS_4                          10                            27
  CLUS_5                          21                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(9Q34.3) MUTATED        6      5      6     17      9     15
  AMP PEAK 18(9Q34.3) WILD-TYPE     32     16     43     45     32     25
                               vv
clus                            CLUS_7
  AMP PEAK 18(9Q34.3) MUTATED        5
  AMP PEAK 18(9Q34.3) WILD-TYPE     16
D18V6, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                           6                            32
  CLUS_2                           5                            16
  CLUS_3                           6                            43
  CLUS_4                          17                            45
  CLUS_5                           9                            32
  CLUS_6                          15                            25
  CLUS_7                           5                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9Q34.3) MUTATED       50     27     45
  AMP PEAK 18(9Q34.3) WILD-TYPE    136    106     76
D18V7, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          50                           136
  CLUS_2                          27                           106
  CLUS_3                          45                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9Q34.3) MUTATED       22     47     17     36
  AMP PEAK 18(9Q34.3) WILD-TYPE     57    128     62     71
D18V8, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          22                            57
  CLUS_2                          47                           128
  CLUS_3                          17                            62
  CLUS_4                          36                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(9Q34.3) MUTATED       23     16     11     19     11      9
  AMP PEAK 18(9Q34.3) WILD-TYPE     53     42     49     39     25     49
D18V9, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          23                            53
  CLUS_2                          16                            42
  CLUS_3                          11                            49
  CLUS_4                          19                            39
  CLUS_5                          11                            25
  CLUS_6                           9                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9Q34.3) MUTATED       53     14     22
  AMP PEAK 18(9Q34.3) WILD-TYPE    148     59     50
D18V10, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          53                           148
  CLUS_2                          14                            59
  CLUS_3                          22                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(10P11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED       53     12     14     36      4
  AMP PEAK 19(10P11.22) WILD-TYPE     70    175     22     40     15
D19V1, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            53                              70
  CLUS_2                            12                             175
  CLUS_3                            14                              22
  CLUS_4                            36                              40
  CLUS_5                             4                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P11.22) MUTATED       55     30      3     19
  AMP PEAK 19(10P11.22) WILD-TYPE     69     91     39     87
D19V2, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            55                              69
  CLUS_2                            30                              91
  CLUS_3                             3                              39
  CLUS_4                            19                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P11.22) MUTATED       14     26     25
  AMP PEAK 19(10P11.22) WILD-TYPE     68     64     66
D19V3, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            14                              68
  CLUS_2                            26                              64
  CLUS_3                            25                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P11.22) MUTATED        7     23     10     25
  AMP PEAK 19(10P11.22) WILD-TYPE     27     60     45     66
D19V4, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                             7                              27
  CLUS_2                            23                              60
  CLUS_3                            10                              45
  CLUS_4                            25                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED       11     13      8      9     29
  AMP PEAK 19(10P11.22) WILD-TYPE     54     49     38     28     33
D19V5, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            11                              54
  CLUS_2                            13                              49
  CLUS_3                             8                              38
  CLUS_4                             9                              28
  CLUS_5                            29                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(10P11.22) MUTATED       13      2      8     14     14     17
  AMP PEAK 19(10P11.22) WILD-TYPE     25     19     41     48     27     23
                                 vv
clus                              CLUS_7
  AMP PEAK 19(10P11.22) MUTATED        2
  AMP PEAK 19(10P11.22) WILD-TYPE     19
D19V6, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            13                              25
  CLUS_2                             2                              19
  CLUS_3                             8                              41
  CLUS_4                            14                              48
  CLUS_5                            14                              27
  CLUS_6                            17                              23
  CLUS_7                             2                              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P11.22) MUTATED       43     27     48
  AMP PEAK 19(10P11.22) WILD-TYPE    143    106     73
D19V7, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            43                             143
  CLUS_2                            27                             106
  CLUS_3                            48                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P11.22) MUTATED       19     34     17     48
  AMP PEAK 19(10P11.22) WILD-TYPE     60    141     62     59
D19V8, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            19                              60
  CLUS_2                            34                             141
  CLUS_3                            17                              62
  CLUS_4                            48                              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(10P11.22) MUTATED       33     14      8     14     12     12
  AMP PEAK 19(10P11.22) WILD-TYPE     43     44     52     44     24     46
D19V9, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            33                              43
  CLUS_2                            14                              44
  CLUS_3                             8                              52
  CLUS_4                            14                              44
  CLUS_5                            12                              24
  CLUS_6                            12                              46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P11.22) MUTATED       57     11     25
  AMP PEAK 19(10P11.22) WILD-TYPE    144     62     47
D19V10, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            57                             144
  CLUS_2                            11                              62
  CLUS_3                            25                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED       27     11      6     37      7
  AMP PEAK 20(10Q22.2) WILD-TYPE     96    176     30     39     12
D20V1, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           27                             96
  CLUS_2                           11                            176
  CLUS_3                            6                             30
  CLUS_4                           37                             39
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(10Q22.2) MUTATED       31     29      4     15
  AMP PEAK 20(10Q22.2) WILD-TYPE     93     92     38     91
D20V2, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           31                             93
  CLUS_2                           29                             92
  CLUS_3                            4                             38
  CLUS_4                           15                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(10Q22.2) MUTATED        8     20     23
  AMP PEAK 20(10Q22.2) WILD-TYPE     74     70     68
D20V3, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                            8                             74
  CLUS_2                           20                             70
  CLUS_3                           23                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(10Q22.2) MUTATED        5     20      6     20
  AMP PEAK 20(10Q22.2) WILD-TYPE     29     63     49     71
D20V4, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                           20                             63
  CLUS_3                            6                             49
  CLUS_4                           20                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED        8     10     11      4     21
  AMP PEAK 20(10Q22.2) WILD-TYPE     57     52     35     33     41
D20V5, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                            8                             57
  CLUS_2                           10                             52
  CLUS_3                           11                             35
  CLUS_4                            4                             33
  CLUS_5                           21                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(10Q22.2) MUTATED       13      2      7     13      4     13
  AMP PEAK 20(10Q22.2) WILD-TYPE     25     19     42     49     37     27
                                vv
clus                             CLUS_7
  AMP PEAK 20(10Q22.2) MUTATED        2
  AMP PEAK 20(10Q22.2) WILD-TYPE     19
D20V6, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           13                             25
  CLUS_2                            2                             19
  CLUS_3                            7                             42
  CLUS_4                           13                             49
  CLUS_5                            4                             37
  CLUS_6                           13                             27
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(10Q22.2) MUTATED       40     20     27
  AMP PEAK 20(10Q22.2) WILD-TYPE    146    113     94
D20V7, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           40                            146
  CLUS_2                           20                            113
  CLUS_3                           27                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(10Q22.2) MUTATED       11     42     11     23
  AMP PEAK 20(10Q22.2) WILD-TYPE     68    133     68     84
D20V8, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                           42                            133
  CLUS_3                           11                             68
  CLUS_4                           23                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(10Q22.2) MUTATED       15     13      7     14     11     10
  AMP PEAK 20(10Q22.2) WILD-TYPE     61     45     53     44     25     48
D20V9, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           15                             61
  CLUS_2                           13                             45
  CLUS_3                            7                             53
  CLUS_4                           14                             44
  CLUS_5                           11                             25
  CLUS_6                           10                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(10Q22.2) MUTATED       45     10     15
  AMP PEAK 20(10Q22.2) WILD-TYPE    156     63     57
D20V10, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           45                            156
  CLUS_2                           10                             63
  CLUS_3                           15                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(10Q26.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED       31     14      8     30      5
  AMP PEAK 21(10Q26.13) WILD-TYPE     92    173     28     46     14
D21V1, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            31                              92
  CLUS_2                            14                             173
  CLUS_3                             8                              28
  CLUS_4                            30                              46
  CLUS_5                             5                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(10Q26.13) MUTATED       40     18      3     14
  AMP PEAK 21(10Q26.13) WILD-TYPE     84    103     39     92
D21V2, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            40                              84
  CLUS_2                            18                             103
  CLUS_3                             3                              39
  CLUS_4                            14                              92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10Q26.13) MUTATED        9     22     22
  AMP PEAK 21(10Q26.13) WILD-TYPE     73     68     69
D21V3, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                             9                              73
  CLUS_2                            22                              68
  CLUS_3                            22                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(10Q26.13) MUTATED        6     17      7     23
  AMP PEAK 21(10Q26.13) WILD-TYPE     28     66     48     68
D21V4, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                             6                              28
  CLUS_2                            17                              66
  CLUS_3                             7                              48
  CLUS_4                            23                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED        8     14      5      5     22
  AMP PEAK 21(10Q26.13) WILD-TYPE     57     48     41     32     40
D21V5, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                             8                              57
  CLUS_2                            14                              48
  CLUS_3                             5                              41
  CLUS_4                             5                              32
  CLUS_5                            22                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(10Q26.13) MUTATED        9      2     10     10      5     16
  AMP PEAK 21(10Q26.13) WILD-TYPE     29     19     39     52     36     24
                                 vv
clus                              CLUS_7
  AMP PEAK 21(10Q26.13) MUTATED        2
  AMP PEAK 21(10Q26.13) WILD-TYPE     19
D21V6, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                             9                              29
  CLUS_2                             2                              19
  CLUS_3                            10                              39
  CLUS_4                            10                              52
  CLUS_5                             5                              36
  CLUS_6                            16                              24
  CLUS_7                             2                              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10Q26.13) MUTATED       33     24     31
  AMP PEAK 21(10Q26.13) WILD-TYPE    153    109     90
D21V7, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            33                             153
  CLUS_2                            24                             109
  CLUS_3                            31                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(10Q26.13) MUTATED       12     32     15     29
  AMP PEAK 21(10Q26.13) WILD-TYPE     67    143     64     78
D21V8, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            12                              67
  CLUS_2                            32                             143
  CLUS_3                            15                              64
  CLUS_4                            29                              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(10Q26.13) MUTATED       17      9     10     13      9     12
  AMP PEAK 21(10Q26.13) WILD-TYPE     59     49     50     45     27     46
D21V9, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            17                              59
  CLUS_2                             9                              49
  CLUS_3                            10                              50
  CLUS_4                            13                              45
  CLUS_5                             9                              27
  CLUS_6                            12                              46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10Q26.13) MUTATED       41     12     17
  AMP PEAK 21(10Q26.13) WILD-TYPE    160     61     55
D21V10, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            41                             160
  CLUS_2                            12                              61
  CLUS_3                            17                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED       42     17      3     24      2
  AMP PEAK 22(11P13) WILD-TYPE     81    170     33     52     17
D22V1, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         42                           81
  CLUS_2                         17                          170
  CLUS_3                          3                           33
  CLUS_4                         24                           52
  CLUS_5                          2                           17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11P13) MUTATED       40     13      7     19
  AMP PEAK 22(11P13) WILD-TYPE     84    108     35     87
D22V2, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         40                           84
  CLUS_2                         13                          108
  CLUS_3                          7                           35
  CLUS_4                         19                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11P13) MUTATED       12     18     15
  AMP PEAK 22(11P13) WILD-TYPE     70     72     76
D22V3, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         12                           70
  CLUS_2                         18                           72
  CLUS_3                         15                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11P13) MUTATED        5     18      4     18
  AMP PEAK 22(11P13) WILD-TYPE     29     65     51     73
D22V4, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                          5                           29
  CLUS_2                         18                           65
  CLUS_3                          4                           51
  CLUS_4                         18                           73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED        7     15      5      1     19
  AMP PEAK 22(11P13) WILD-TYPE     58     47     41     36     43
D22V5, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                          7                           58
  CLUS_2                         15                           47
  CLUS_3                          5                           41
  CLUS_4                          1                           36
  CLUS_5                         19                           43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 22(11P13) MUTATED       10      4      9      5      4     14      1
  AMP PEAK 22(11P13) WILD-TYPE     28     17     40     57     37     26     20
D22V6, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         10                           28
  CLUS_2                          4                           17
  CLUS_3                          9                           40
  CLUS_4                          5                           57
  CLUS_5                          4                           37
  CLUS_6                         14                           26
  CLUS_7                          1                           20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11P13) MUTATED       25     21     41
  AMP PEAK 22(11P13) WILD-TYPE    161    112     80
D22V7, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         25                          161
  CLUS_2                         21                          112
  CLUS_3                         41                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11P13) MUTATED       11     25     13     38
  AMP PEAK 22(11P13) WILD-TYPE     68    150     66     69
D22V8, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         11                           68
  CLUS_2                         25                          150
  CLUS_3                         13                           66
  CLUS_4                         38                           69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(11P13) MUTATED       23     13      7      6      9     10
  AMP PEAK 22(11P13) WILD-TYPE     53     45     53     52     27     48
D22V9, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         23                           53
  CLUS_2                         13                           45
  CLUS_3                          7                           53
  CLUS_4                          6                           52
  CLUS_5                          9                           27
  CLUS_6                         10                           48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11P13) MUTATED       44     12     12
  AMP PEAK 22(11P13) WILD-TYPE    157     61     60
D22V10, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         44                          157
  CLUS_2                         12                           61
  CLUS_3                         12                           60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED       47     10      5     28      2
  AMP PEAK 23(11P11.2) WILD-TYPE     76    177     31     48     17
D23V1, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           47                             76
  CLUS_2                           10                            177
  CLUS_3                            5                             31
  CLUS_4                           28                             48
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(11P11.2) MUTATED       46     16      6     13
  AMP PEAK 23(11P11.2) WILD-TYPE     78    105     36     93
D23V2, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           46                             78
  CLUS_2                           16                            105
  CLUS_3                            6                             36
  CLUS_4                           13                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(11P11.2) MUTATED       11     16     16
  AMP PEAK 23(11P11.2) WILD-TYPE     71     74     75
D23V3, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           11                             71
  CLUS_2                           16                             74
  CLUS_3                           16                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(11P11.2) MUTATED        5     17      4     17
  AMP PEAK 23(11P11.2) WILD-TYPE     29     66     51     74
D23V4, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                           17                             66
  CLUS_3                            4                             51
  CLUS_4                           17                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED        6      8      5      2     24
  AMP PEAK 23(11P11.2) WILD-TYPE     59     54     41     35     38
D23V5, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                            6                             59
  CLUS_2                            8                             54
  CLUS_3                            5                             41
  CLUS_4                            2                             35
  CLUS_5                           24                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(11P11.2) MUTATED        8      3      3      7      6     17
  AMP PEAK 23(11P11.2) WILD-TYPE     30     18     46     55     35     23
                                vv
clus                             CLUS_7
  AMP PEAK 23(11P11.2) MUTATED        1
  AMP PEAK 23(11P11.2) WILD-TYPE     20
D23V6, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                            8                             30
  CLUS_2                            3                             18
  CLUS_3                            3                             46
  CLUS_4                            7                             55
  CLUS_5                            6                             35
  CLUS_6                           17                             23
  CLUS_7                            1                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(11P11.2) MUTATED       32     15     44
  AMP PEAK 23(11P11.2) WILD-TYPE    154    118     77
D23V7, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           32                            154
  CLUS_2                           15                            118
  CLUS_3                           44                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(11P11.2) MUTATED       14     29      7     41
  AMP PEAK 23(11P11.2) WILD-TYPE     65    146     72     66
D23V8, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           14                             65
  CLUS_2                           29                            146
  CLUS_3                            7                             72
  CLUS_4                           41                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(11P11.2) MUTATED       26     16      5      7      9      6
  AMP PEAK 23(11P11.2) WILD-TYPE     50     42     55     51     27     52
D23V9, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           26                             50
  CLUS_2                           16                             42
  CLUS_3                            5                             55
  CLUS_4                            7                             51
  CLUS_5                            9                             27
  CLUS_6                            6                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(11P11.2) MUTATED       48      5     16
  AMP PEAK 23(11P11.2) WILD-TYPE    153     68     56
D23V10, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           48                            153
  CLUS_2                            5                             68
  CLUS_3                           16                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED       50     16      5     36      8
  AMP PEAK 24(11Q13.3) WILD-TYPE     73    171     31     40     11
D24V1, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           50                             73
  CLUS_2                           16                            171
  CLUS_3                            5                             31
  CLUS_4                           36                             40
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(11Q13.3) MUTATED       46     30      6     20
  AMP PEAK 24(11Q13.3) WILD-TYPE     78     91     36     86
D24V2, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           46                             78
  CLUS_2                           30                             91
  CLUS_3                            6                             36
  CLUS_4                           20                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11Q13.3) MUTATED       13     20     25
  AMP PEAK 24(11Q13.3) WILD-TYPE     69     70     66
D24V3, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           13                             69
  CLUS_2                           20                             70
  CLUS_3                           25                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(11Q13.3) MUTATED        9     20      9     20
  AMP PEAK 24(11Q13.3) WILD-TYPE     25     63     46     71
D24V4, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                            9                             25
  CLUS_2                           20                             63
  CLUS_3                            9                             46
  CLUS_4                           20                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED       12     10     11      6     21
  AMP PEAK 24(11Q13.3) WILD-TYPE     53     52     35     31     41
D24V5, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           12                             53
  CLUS_2                           10                             52
  CLUS_3                           11                             35
  CLUS_4                            6                             31
  CLUS_5                           21                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(11Q13.3) MUTATED        9      4      5     15      9     16
  AMP PEAK 24(11Q13.3) WILD-TYPE     29     17     44     47     32     24
                                vv
clus                             CLUS_7
  AMP PEAK 24(11Q13.3) MUTATED        2
  AMP PEAK 24(11Q13.3) WILD-TYPE     19
D24V6, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                            9                             29
  CLUS_2                            4                             17
  CLUS_3                            5                             44
  CLUS_4                           15                             47
  CLUS_5                            9                             32
  CLUS_6                           16                             24
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11Q13.3) MUTATED       45     20     49
  AMP PEAK 24(11Q13.3) WILD-TYPE    141    113     72
D24V7, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           45                            141
  CLUS_2                           20                            113
  CLUS_3                           49                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(11Q13.3) MUTATED       21     44     10     39
  AMP PEAK 24(11Q13.3) WILD-TYPE     58    131     69     68
D24V8, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           44                            131
  CLUS_3                           10                             69
  CLUS_4                           39                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(11Q13.3) MUTATED       26     20      7     15     14      8
  AMP PEAK 24(11Q13.3) WILD-TYPE     50     38     53     43     22     50
D24V9, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           26                             50
  CLUS_2                           20                             38
  CLUS_3                            7                             53
  CLUS_4                           15                             43
  CLUS_5                           14                             22
  CLUS_6                            8                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11Q13.3) MUTATED       59     11     20
  AMP PEAK 24(11Q13.3) WILD-TYPE    142     62     52
D24V10, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           59                            142
  CLUS_2                           11                             62
  CLUS_3                           20                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED       39     26     13     42      8
  AMP PEAK 25(12P12.1) WILD-TYPE     84    161     23     34     11
D25V1, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           39                             84
  CLUS_2                           26                            161
  CLUS_3                           13                             23
  CLUS_4                           42                             34
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(12P12.1) MUTATED       48     37     12     22
  AMP PEAK 25(12P12.1) WILD-TYPE     76     84     30     84
D25V2, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           48                             76
  CLUS_2                           37                             84
  CLUS_3                           12                             30
  CLUS_4                           22                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(12P12.1) MUTATED       22     20     28
  AMP PEAK 25(12P12.1) WILD-TYPE     60     70     63
D25V3, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           22                             60
  CLUS_2                           20                             70
  CLUS_3                           28                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(12P12.1) MUTATED        5     24     17     24
  AMP PEAK 25(12P12.1) WILD-TYPE     29     59     38     67
D25V4, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                           24                             59
  CLUS_3                           17                             38
  CLUS_4                           24                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED       14     15     10     10     24
  AMP PEAK 25(12P12.1) WILD-TYPE     51     47     36     27     38
D25V5, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           14                             51
  CLUS_2                           15                             47
  CLUS_3                           10                             36
  CLUS_4                           10                             27
  CLUS_5                           24                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(12P12.1) MUTATED       13      5      9     17     15     11
  AMP PEAK 25(12P12.1) WILD-TYPE     25     16     40     45     26     29
                                vv
clus                             CLUS_7
  AMP PEAK 25(12P12.1) MUTATED        3
  AMP PEAK 25(12P12.1) WILD-TYPE     18
D25V6, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           13                             25
  CLUS_2                            5                             16
  CLUS_3                            9                             40
  CLUS_4                           17                             45
  CLUS_5                           15                             26
  CLUS_6                           11                             29
  CLUS_7                            3                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(12P12.1) MUTATED       50     32     46
  AMP PEAK 25(12P12.1) WILD-TYPE    136    101     75
D25V7, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           50                            136
  CLUS_2                           32                            101
  CLUS_3                           46                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(12P12.1) MUTATED       17     54     19     38
  AMP PEAK 25(12P12.1) WILD-TYPE     62    121     60     69
D25V8, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           17                             62
  CLUS_2                           54                            121
  CLUS_3                           19                             60
  CLUS_4                           38                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(12P12.1) MUTATED       27     18     16     19      9     13
  AMP PEAK 25(12P12.1) WILD-TYPE     49     40     44     39     27     45
D25V9, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           27                             49
  CLUS_2                           18                             40
  CLUS_3                           16                             44
  CLUS_4                           19                             39
  CLUS_5                            9                             27
  CLUS_6                           13                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(12P12.1) MUTATED       69     14     19
  AMP PEAK 25(12P12.1) WILD-TYPE    132     59     53
D25V10, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           69                            132
  CLUS_2                           14                             59
  CLUS_3                           19                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       32     24      7     41      5
  AMP PEAK 26(12Q15) WILD-TYPE     91    163     29     35     14
D26V1, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         32                           91
  CLUS_2                         24                          163
  CLUS_3                          7                           29
  CLUS_4                         41                           35
  CLUS_5                          5                           14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(12Q15) MUTATED       39     22     15     21
  AMP PEAK 26(12Q15) WILD-TYPE     85     99     27     85
D26V2, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         39                           85
  CLUS_2                         22                           99
  CLUS_3                         15                           27
  CLUS_4                         21                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12Q15) MUTATED       18     18     28
  AMP PEAK 26(12Q15) WILD-TYPE     64     72     63
D26V3, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         18                           64
  CLUS_2                         18                           72
  CLUS_3                         28                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(12Q15) MUTATED        6     26     11     21
  AMP PEAK 26(12Q15) WILD-TYPE     28     57     44     70
D26V4, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                          6                           28
  CLUS_2                         26                           57
  CLUS_3                         11                           44
  CLUS_4                         21                           70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       12     13     14      7     20
  AMP PEAK 26(12Q15) WILD-TYPE     53     49     32     30     42
D26V5, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         12                           53
  CLUS_2                         13                           49
  CLUS_3                         14                           32
  CLUS_4                          7                           30
  CLUS_5                         20                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(12Q15) MUTATED       12      7      7     18      9     12      1
  AMP PEAK 26(12Q15) WILD-TYPE     26     14     42     44     32     28     20
D26V6, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         12                           26
  CLUS_2                          7                           14
  CLUS_3                          7                           42
  CLUS_4                         18                           44
  CLUS_5                          9                           32
  CLUS_6                         12                           28
  CLUS_7                          1                           20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12Q15) MUTATED       43     28     38
  AMP PEAK 26(12Q15) WILD-TYPE    143    105     83
D26V7, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         43                          143
  CLUS_2                         28                          105
  CLUS_3                         38                           83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(12Q15) MUTATED       15     46     15     33
  AMP PEAK 26(12Q15) WILD-TYPE     64    129     64     74
D26V8, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         15                           64
  CLUS_2                         46                          129
  CLUS_3                         15                           64
  CLUS_4                         33                           74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(12Q15) MUTATED       24     14     14     13      2     11
  AMP PEAK 26(12Q15) WILD-TYPE     52     44     46     45     34     47
D26V9, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         24                           52
  CLUS_2                         14                           44
  CLUS_3                         14                           46
  CLUS_4                         13                           45
  CLUS_5                          2                           34
  CLUS_6                         11                           47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12Q15) MUTATED       50     11     17
  AMP PEAK 26(12Q15) WILD-TYPE    151     62     55
D26V10, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         50                          151
  CLUS_2                         11                           62
  CLUS_3                         17                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(13Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       79     35     27     19     10
  AMP PEAK 27(13Q12.3) WILD-TYPE     44    152      9     57      9
D27V1, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           79                             44
  CLUS_2                           35                            152
  CLUS_3                           27                              9
  CLUS_4                           19                             57
  CLUS_5                           10                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(13Q12.3) MUTATED       74     39      8     30
  AMP PEAK 27(13Q12.3) WILD-TYPE     50     82     34     76
D27V2, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           74                             50
  CLUS_2                           39                             82
  CLUS_3                            8                             34
  CLUS_4                           30                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(13Q12.3) MUTATED       30     30     40
  AMP PEAK 27(13Q12.3) WILD-TYPE     52     60     51
D27V3, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           30                             52
  CLUS_2                           30                             60
  CLUS_3                           40                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(13Q12.3) MUTATED       14     39     19     28
  AMP PEAK 27(13Q12.3) WILD-TYPE     20     44     36     63
D27V4, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           14                             20
  CLUS_2                           39                             44
  CLUS_3                           19                             36
  CLUS_4                           28                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       21     17     13     19     31
  AMP PEAK 27(13Q12.3) WILD-TYPE     44     45     33     18     31
D27V5, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           21                             44
  CLUS_2                           17                             45
  CLUS_3                           13                             33
  CLUS_4                           19                             18
  CLUS_5                           31                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(13Q12.3) MUTATED        4      5     17     23     25     22
  AMP PEAK 27(13Q12.3) WILD-TYPE     34     16     32     39     16     18
                                vv
clus                             CLUS_7
  AMP PEAK 27(13Q12.3) MUTATED        5
  AMP PEAK 27(13Q12.3) WILD-TYPE     16
D27V6, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                            4                             34
  CLUS_2                            5                             16
  CLUS_3                           17                             32
  CLUS_4                           23                             39
  CLUS_5                           25                             16
  CLUS_6                           22                             18
  CLUS_7                            5                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(13Q12.3) MUTATED       60     41     68
  AMP PEAK 27(13Q12.3) WILD-TYPE    126     92     53
D27V7, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           60                            126
  CLUS_2                           41                             92
  CLUS_3                           68                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(13Q12.3) MUTATED       36     48     25     60
  AMP PEAK 27(13Q12.3) WILD-TYPE     43    127     54     47
D27V8, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           36                             43
  CLUS_2                           48                            127
  CLUS_3                           25                             54
  CLUS_4                           60                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(13Q12.3) MUTATED       40     16     20     21     21     12
  AMP PEAK 27(13Q12.3) WILD-TYPE     36     42     40     37     15     46
D27V9, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           40                             36
  CLUS_2                           16                             42
  CLUS_3                           20                             40
  CLUS_4                           21                             37
  CLUS_5                           21                             15
  CLUS_6                           12                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(13Q12.3) MUTATED       86     23     21
  AMP PEAK 27(13Q12.3) WILD-TYPE    115     50     51
D27V10, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           86                            115
  CLUS_2                           23                             50
  CLUS_3                           21                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       89     40     25     20      7
  AMP PEAK 28(13Q22.1) WILD-TYPE     34    147     11     56     12
D28V1, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           89                             34
  CLUS_2                           40                            147
  CLUS_3                           25                             11
  CLUS_4                           20                             56
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(13Q22.1) MUTATED       79     39     10     31
  AMP PEAK 28(13Q22.1) WILD-TYPE     45     82     32     75
D28V2, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           79                             45
  CLUS_2                           39                             82
  CLUS_3                           10                             32
  CLUS_4                           31                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q22.1) MUTATED       31     31     42
  AMP PEAK 28(13Q22.1) WILD-TYPE     51     59     49
D28V3, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           31                             51
  CLUS_2                           31                             59
  CLUS_3                           42                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(13Q22.1) MUTATED       15     35     22     32
  AMP PEAK 28(13Q22.1) WILD-TYPE     19     48     33     59
D28V4, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           15                             19
  CLUS_2                           35                             48
  CLUS_3                           22                             33
  CLUS_4                           32                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       22     16      9     17     39
  AMP PEAK 28(13Q22.1) WILD-TYPE     43     46     37     20     23
D28V5, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           22                             43
  CLUS_2                           16                             46
  CLUS_3                            9                             37
  CLUS_4                           17                             20
  CLUS_5                           39                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(13Q22.1) MUTATED        7      6     15     18     24     28
  AMP PEAK 28(13Q22.1) WILD-TYPE     31     15     34     44     17     12
                                vv
clus                             CLUS_7
  AMP PEAK 28(13Q22.1) MUTATED        5
  AMP PEAK 28(13Q22.1) WILD-TYPE     16
D28V6, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                            6                             15
  CLUS_3                           15                             34
  CLUS_4                           18                             44
  CLUS_5                           24                             17
  CLUS_6                           28                             12
  CLUS_7                            5                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q22.1) MUTATED       64     40     76
  AMP PEAK 28(13Q22.1) WILD-TYPE    122     93     45
D28V7, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           64                            122
  CLUS_2                           40                             93
  CLUS_3                           76                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(13Q22.1) MUTATED       37     50     25     68
  AMP PEAK 28(13Q22.1) WILD-TYPE     42    125     54     39
D28V8, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           37                             42
  CLUS_2                           50                            125
  CLUS_3                           25                             54
  CLUS_4                           68                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(13Q22.1) MUTATED       46     20     22     21     19     12
  AMP PEAK 28(13Q22.1) WILD-TYPE     30     38     38     37     17     46
D28V9, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           46                             30
  CLUS_2                           20                             38
  CLUS_3                           22                             38
  CLUS_4                           21                             37
  CLUS_5                           19                             17
  CLUS_6                           12                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q22.1) MUTATED       92     21     27
  AMP PEAK 28(13Q22.1) WILD-TYPE    109     52     45
D28V10, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           92                            109
  CLUS_2                           21                             52
  CLUS_3                           27                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(15Q26.1) MUTATED       61     15      5     31      1
  AMP PEAK 29(15Q26.1) WILD-TYPE     62    172     31     45     18
D29V1, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           61                             62
  CLUS_2                           15                            172
  CLUS_3                            5                             31
  CLUS_4                           31                             45
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(15Q26.1) MUTATED       57     29      1     15
  AMP PEAK 29(15Q26.1) WILD-TYPE     67     92     41     91
D29V2, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           57                             67
  CLUS_2                           29                             92
  CLUS_3                            1                             41
  CLUS_4                           15                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(15Q26.1) MUTATED       16     20     29
  AMP PEAK 29(15Q26.1) WILD-TYPE     66     70     62
D29V3, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           16                             66
  CLUS_2                           20                             70
  CLUS_3                           29                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(15Q26.1) MUTATED        8     27     10     20
  AMP PEAK 29(15Q26.1) WILD-TYPE     26     56     45     71
D29V4, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                            8                             26
  CLUS_2                           27                             56
  CLUS_3                           10                             45
  CLUS_4                           20                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(15Q26.1) MUTATED       13      4     10     10     28
  AMP PEAK 29(15Q26.1) WILD-TYPE     52     58     36     27     34
D29V5, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           13                             52
  CLUS_2                            4                             58
  CLUS_3                           10                             36
  CLUS_4                           10                             27
  CLUS_5                           28                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(15Q26.1) MUTATED       13      1      4     13     12     20
  AMP PEAK 29(15Q26.1) WILD-TYPE     25     20     45     49     29     20
                                vv
clus                             CLUS_7
  AMP PEAK 29(15Q26.1) MUTATED        2
  AMP PEAK 29(15Q26.1) WILD-TYPE     19
D29V6, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           13                             25
  CLUS_2                            1                             20
  CLUS_3                            4                             45
  CLUS_4                           13                             49
  CLUS_5                           12                             29
  CLUS_6                           20                             20
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(15Q26.1) MUTATED       48     20     44
  AMP PEAK 29(15Q26.1) WILD-TYPE    138    113     77
D29V7, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           48                            138
  CLUS_2                           20                            113
  CLUS_3                           44                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(15Q26.1) MUTATED       20     42      9     41
  AMP PEAK 29(15Q26.1) WILD-TYPE     59    133     70     66
D29V8, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           20                             59
  CLUS_2                           42                            133
  CLUS_3                            9                             70
  CLUS_4                           41                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(15Q26.1) MUTATED       29     14     19     18      8      6
  AMP PEAK 29(15Q26.1) WILD-TYPE     47     44     41     40     28     52
D29V9, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           29                             47
  CLUS_2                           14                             44
  CLUS_3                           19                             41
  CLUS_4                           18                             40
  CLUS_5                            8                             28
  CLUS_6                            6                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(15Q26.1) MUTATED       63      8     23
  AMP PEAK 29(15Q26.1) WILD-TYPE    138     65     49
D29V10, multiclass
        clus
vv       AMP PEAK 29(15Q26.1) MUTATED AMP PEAK 29(15Q26.1) WILD-TYPE
  CLUS_1                           63                            138
  CLUS_2                            8                             65
  CLUS_3                           23                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(17Q12) MUTATED       82     21     14     23      7
  AMP PEAK 30(17Q12) WILD-TYPE     41    166     22     53     12
D30V1, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         82                           41
  CLUS_2                         21                          166
  CLUS_3                         14                           22
  CLUS_4                         23                           53
  CLUS_5                          7                           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(17Q12) MUTATED       69     33     12     19
  AMP PEAK 30(17Q12) WILD-TYPE     55     88     30     87
D30V2, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         69                           55
  CLUS_2                         33                           88
  CLUS_3                         12                           30
  CLUS_4                         19                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(17Q12) MUTATED       22     24     28
  AMP PEAK 30(17Q12) WILD-TYPE     60     66     63
D30V3, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         22                           60
  CLUS_2                         24                           66
  CLUS_3                         28                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(17Q12) MUTATED       11     30      8     25
  AMP PEAK 30(17Q12) WILD-TYPE     23     53     47     66
D30V4, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         11                           23
  CLUS_2                         30                           53
  CLUS_3                          8                           47
  CLUS_4                         25                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(17Q12) MUTATED       14     10     15      8     32
  AMP PEAK 30(17Q12) WILD-TYPE     51     52     31     29     30
D30V5, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         14                           51
  CLUS_2                         10                           52
  CLUS_3                         15                           31
  CLUS_4                          8                           29
  CLUS_5                         32                           30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 30(17Q12) MUTATED       13      7      5     20     13     20      1
  AMP PEAK 30(17Q12) WILD-TYPE     25     14     44     42     28     20     20
D30V6, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         13                           25
  CLUS_2                          7                           14
  CLUS_3                          5                           44
  CLUS_4                         20                           42
  CLUS_5                         13                           28
  CLUS_6                         20                           20
  CLUS_7                          1                           20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(17Q12) MUTATED       49     28     69
  AMP PEAK 30(17Q12) WILD-TYPE    137    105     52
D30V7, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         49                          137
  CLUS_2                         28                          105
  CLUS_3                         69                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(17Q12) MUTATED       19     55     17     55
  AMP PEAK 30(17Q12) WILD-TYPE     60    120     62     52
D30V8, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         19                           60
  CLUS_2                         55                          120
  CLUS_3                         17                           62
  CLUS_4                         55                           52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(17Q12) MUTATED       38     17     19     20     11     10
  AMP PEAK 30(17Q12) WILD-TYPE     38     41     41     38     25     48
D30V9, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         38                           38
  CLUS_2                         17                           41
  CLUS_3                         19                           41
  CLUS_4                         20                           38
  CLUS_5                         11                           25
  CLUS_6                         10                           48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(17Q12) MUTATED       81     11     23
  AMP PEAK 30(17Q12) WILD-TYPE    120     62     49
D30V10, multiclass
        clus
vv       AMP PEAK 30(17Q12) MUTATED AMP PEAK 30(17Q12) WILD-TYPE
  CLUS_1                         81                          120
  CLUS_2                         11                           62
  CLUS_3                         23                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(18Q11.2) MUTATED       58     27     12     36      7
  AMP PEAK 31(18Q11.2) WILD-TYPE     65    160     24     40     12
D31V1, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           58                             65
  CLUS_2                           27                            160
  CLUS_3                           12                             24
  CLUS_4                           36                             40
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(18Q11.2) MUTATED       55     37      3     28
  AMP PEAK 31(18Q11.2) WILD-TYPE     69     84     39     78
D31V2, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           55                             69
  CLUS_2                           37                             84
  CLUS_3                            3                             39
  CLUS_4                           28                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(18Q11.2) MUTATED       19     25     31
  AMP PEAK 31(18Q11.2) WILD-TYPE     63     65     60
D31V3, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           19                             63
  CLUS_2                           25                             65
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(18Q11.2) MUTATED        6     29     14     26
  AMP PEAK 31(18Q11.2) WILD-TYPE     28     54     41     65
D31V4, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                            6                             28
  CLUS_2                           29                             54
  CLUS_3                           14                             41
  CLUS_4                           26                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(18Q11.2) MUTATED       12     12     17      8     25
  AMP PEAK 31(18Q11.2) WILD-TYPE     53     50     29     29     37
D31V5, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           12                             53
  CLUS_2                           12                             50
  CLUS_3                           17                             29
  CLUS_4                            8                             29
  CLUS_5                           25                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(18Q11.2) MUTATED        8      2      7     24     11     18
  AMP PEAK 31(18Q11.2) WILD-TYPE     30     19     42     38     30     22
                                vv
clus                             CLUS_7
  AMP PEAK 31(18Q11.2) MUTATED        4
  AMP PEAK 31(18Q11.2) WILD-TYPE     17
D31V6, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                            8                             30
  CLUS_2                            2                             19
  CLUS_3                            7                             42
  CLUS_4                           24                             38
  CLUS_5                           11                             30
  CLUS_6                           18                             22
  CLUS_7                            4                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(18Q11.2) MUTATED       49     35     56
  AMP PEAK 31(18Q11.2) WILD-TYPE    137     98     65
D31V7, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           49                            137
  CLUS_2                           35                             98
  CLUS_3                           56                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(18Q11.2) MUTATED       21     48     20     51
  AMP PEAK 31(18Q11.2) WILD-TYPE     58    127     59     56
D31V8, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           48                            127
  CLUS_3                           20                             59
  CLUS_4                           51                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(18Q11.2) MUTATED       30     19     17     15     11     13
  AMP PEAK 31(18Q11.2) WILD-TYPE     46     39     43     43     25     45
D31V9, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           30                             46
  CLUS_2                           19                             39
  CLUS_3                           17                             43
  CLUS_4                           15                             43
  CLUS_5                           11                             25
  CLUS_6                           13                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(18Q11.2) MUTATED       64     17     24
  AMP PEAK 31(18Q11.2) WILD-TYPE    137     56     48
D31V10, multiclass
        clus
vv       AMP PEAK 31(18Q11.2) MUTATED AMP PEAK 31(18Q11.2) WILD-TYPE
  CLUS_1                           64                            137
  CLUS_2                           17                             56
  CLUS_3                           24                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(19P13.2) MUTATED       18      6     10     12      1
  AMP PEAK 32(19P13.2) WILD-TYPE    105    181     26     64     18
D32V1, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           18                            105
  CLUS_2                            6                            181
  CLUS_3                           10                             26
  CLUS_4                           12                             64
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(19P13.2) MUTATED       19     15      4      5
  AMP PEAK 32(19P13.2) WILD-TYPE    105    106     38    101
D32V2, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           19                            105
  CLUS_2                           15                            106
  CLUS_3                            4                             38
  CLUS_4                            5                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(19P13.2) MUTATED        9      8     10
  AMP PEAK 32(19P13.2) WILD-TYPE     73     82     81
D32V3, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            9                             73
  CLUS_2                            8                             82
  CLUS_3                           10                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(19P13.2) MUTATED        4     10      6      7
  AMP PEAK 32(19P13.2) WILD-TYPE     30     73     49     84
D32V4, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            4                             30
  CLUS_2                           10                             73
  CLUS_3                            6                             49
  CLUS_4                            7                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(19P13.2) MUTATED        5      7      4      6      7
  AMP PEAK 32(19P13.2) WILD-TYPE     60     55     42     31     55
D32V5, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            5                             60
  CLUS_2                            7                             55
  CLUS_3                            4                             42
  CLUS_4                            6                             31
  CLUS_5                            7                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(19P13.2) MUTATED        3      2      4      5      9      6
  AMP PEAK 32(19P13.2) WILD-TYPE     35     19     45     57     32     34
                                vv
clus                             CLUS_7
  AMP PEAK 32(19P13.2) MUTATED        0
  AMP PEAK 32(19P13.2) WILD-TYPE     21
D32V6, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            2                             19
  CLUS_3                            4                             45
  CLUS_4                            5                             57
  CLUS_5                            9                             32
  CLUS_6                            6                             34
  CLUS_7                            0                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(19P13.2) MUTATED       17     13     16
  AMP PEAK 32(19P13.2) WILD-TYPE    169    120    105
D32V7, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           17                            169
  CLUS_2                           13                            120
  CLUS_3                           16                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(19P13.2) MUTATED       11     16      8     11
  AMP PEAK 32(19P13.2) WILD-TYPE     68    159     71     96
D32V8, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                           16                            159
  CLUS_3                            8                             71
  CLUS_4                           11                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(19P13.2) MUTATED       11      4      9      5      0      7
  AMP PEAK 32(19P13.2) WILD-TYPE     65     54     51     53     36     51
D32V9, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           11                             65
  CLUS_2                            4                             54
  CLUS_3                            9                             51
  CLUS_4                            5                             53
  CLUS_5                            0                             36
  CLUS_6                            7                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(19P13.2) MUTATED       21      5     10
  AMP PEAK 32(19P13.2) WILD-TYPE    180     68     62
D32V10, multiclass
        clus
vv       AMP PEAK 32(19P13.2) MUTATED AMP PEAK 32(19P13.2) WILD-TYPE
  CLUS_1                           21                            180
  CLUS_2                            5                             68
  CLUS_3                           10                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED       79     17     10     23      1
  AMP PEAK 33(19Q12) WILD-TYPE     44    170     26     53     18
D33V1, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         79                           44
  CLUS_2                         17                          170
  CLUS_3                         10                           26
  CLUS_4                         23                           53
  CLUS_5                          1                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(19Q12) MUTATED       67     21      9     21
  AMP PEAK 33(19Q12) WILD-TYPE     57    100     33     85
D33V2, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         67                           57
  CLUS_2                         21                          100
  CLUS_3                          9                           33
  CLUS_4                         21                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(19Q12) MUTATED       20     18     37
  AMP PEAK 33(19Q12) WILD-TYPE     62     72     54
D33V3, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         20                           62
  CLUS_2                         18                           72
  CLUS_3                         37                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(19Q12) MUTATED        7     32     14     22
  AMP PEAK 33(19Q12) WILD-TYPE     27     51     41     69
D33V4, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                          7                           27
  CLUS_2                         32                           51
  CLUS_3                         14                           41
  CLUS_4                         22                           69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED       10      9     10      6     44
  AMP PEAK 33(19Q12) WILD-TYPE     55     53     36     31     18
D33V5, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         10                           55
  CLUS_2                          9                           53
  CLUS_3                         10                           36
  CLUS_4                          6                           31
  CLUS_5                         44                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 33(19Q12) MUTATED       10      5      6     15     11     29      3
  AMP PEAK 33(19Q12) WILD-TYPE     28     16     43     47     30     11     18
D33V6, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         10                           28
  CLUS_2                          5                           16
  CLUS_3                          6                           43
  CLUS_4                         15                           47
  CLUS_5                         11                           30
  CLUS_6                         29                           11
  CLUS_7                          3                           18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(19Q12) MUTATED       34     26     69
  AMP PEAK 33(19Q12) WILD-TYPE    152    107     52
D33V7, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         34                          152
  CLUS_2                         26                          107
  CLUS_3                         69                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(19Q12) MUTATED       18     27     17     67
  AMP PEAK 33(19Q12) WILD-TYPE     61    148     62     40
D33V8, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         18                           61
  CLUS_2                         27                          148
  CLUS_3                         17                           62
  CLUS_4                         67                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(19Q12) MUTATED       43      9     15     12     13     12
  AMP PEAK 33(19Q12) WILD-TYPE     33     49     45     46     23     46
D33V9, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         43                           33
  CLUS_2                          9                           49
  CLUS_3                         15                           45
  CLUS_4                         12                           46
  CLUS_5                         13                           23
  CLUS_6                         12                           46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(19Q12) MUTATED       69     14     21
  AMP PEAK 33(19Q12) WILD-TYPE    132     59     51
D33V10, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         69                          132
  CLUS_2                         14                           59
  CLUS_3                         21                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = AMP PEAK 34(19Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED       55     20     11     25      0
  AMP PEAK 34(19Q13.32) WILD-TYPE     68    167     25     51     19
D34V1, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            55                              68
  CLUS_2                            20                             167
  CLUS_3                            11                              25
  CLUS_4                            25                              51
  CLUS_5                             0                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(19Q13.32) MUTATED       43     25     12     18
  AMP PEAK 34(19Q13.32) WILD-TYPE     81     96     30     88
D34V2, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            43                              81
  CLUS_2                            25                              96
  CLUS_3                            12                              30
  CLUS_4                            18                              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(19Q13.32) MUTATED       18     17     25
  AMP PEAK 34(19Q13.32) WILD-TYPE     64     73     66
D34V3, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            18                              64
  CLUS_2                            17                              73
  CLUS_3                            25                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(19Q13.32) MUTATED        6     24     11     19
  AMP PEAK 34(19Q13.32) WILD-TYPE     28     59     44     72
D34V4, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                             6                              28
  CLUS_2                            24                              59
  CLUS_3                            11                              44
  CLUS_4                            19                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED       13      8     11      6     27
  AMP PEAK 34(19Q13.32) WILD-TYPE     52     54     35     31     35
D34V5, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            13                              52
  CLUS_2                             8                              54
  CLUS_3                            11                              35
  CLUS_4                             6                              31
  CLUS_5                            27                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(19Q13.32) MUTATED        7      7      6     15     12     15
  AMP PEAK 34(19Q13.32) WILD-TYPE     31     14     43     47     29     25
                                 vv
clus                              CLUS_7
  AMP PEAK 34(19Q13.32) MUTATED        3
  AMP PEAK 34(19Q13.32) WILD-TYPE     18
D34V6, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                             7                              31
  CLUS_2                             7                              14
  CLUS_3                             6                              43
  CLUS_4                            15                              47
  CLUS_5                            12                              29
  CLUS_6                            15                              25
  CLUS_7                             3                              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(19Q13.32) MUTATED       38     26     46
  AMP PEAK 34(19Q13.32) WILD-TYPE    148    107     75
D34V7, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            38                             148
  CLUS_2                            26                             107
  CLUS_3                            46                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(19Q13.32) MUTATED       18     36     15     41
  AMP PEAK 34(19Q13.32) WILD-TYPE     61    139     64     66
D34V8, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            18                              61
  CLUS_2                            36                             139
  CLUS_3                            15                              64
  CLUS_4                            41                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(19Q13.32) MUTATED       30     11      8     15     11      8
  AMP PEAK 34(19Q13.32) WILD-TYPE     46     47     52     43     25     50
D34V9, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            30                              46
  CLUS_2                            11                              47
  CLUS_3                             8                              52
  CLUS_4                            15                              43
  CLUS_5                            11                              25
  CLUS_6                             8                              50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(19Q13.32) MUTATED       60     10     13
  AMP PEAK 34(19Q13.32) WILD-TYPE    141     63     59
D34V10, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            60                             141
  CLUS_2                            10                              63
  CLUS_3                            13                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 35(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED      116     69     32     60     16
  AMP PEAK 35(20Q13.2) WILD-TYPE      7    118      4     16      3
D35V1, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          116                              7
  CLUS_2                           69                            118
  CLUS_3                           32                              4
  CLUS_4                           60                             16
  CLUS_5                           16                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(20Q13.2) MUTATED      118     60     32     51
  AMP PEAK 35(20Q13.2) WILD-TYPE      6     61     10     55
D35V2, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          118                              6
  CLUS_2                           60                             61
  CLUS_3                           32                             10
  CLUS_4                           51                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(20Q13.2) MUTATED       49     52     71
  AMP PEAK 35(20Q13.2) WILD-TYPE     33     38     20
D35V3, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           49                             33
  CLUS_2                           52                             38
  CLUS_3                           71                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(20Q13.2) MUTATED       22     65     29     56
  AMP PEAK 35(20Q13.2) WILD-TYPE     12     18     26     35
D35V4, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           22                             12
  CLUS_2                           65                             18
  CLUS_3                           29                             26
  CLUS_4                           56                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED       31     31     31     24     59
  AMP PEAK 35(20Q13.2) WILD-TYPE     34     31     15     13      3
D35V5, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           31                             34
  CLUS_2                           31                             31
  CLUS_3                           31                             15
  CLUS_4                           24                             13
  CLUS_5                           59                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(20Q13.2) MUTATED       23     19     19     43     31     38
  AMP PEAK 35(20Q13.2) WILD-TYPE     15      2     30     19     10      2
                                vv
clus                             CLUS_7
  AMP PEAK 35(20Q13.2) MUTATED        3
  AMP PEAK 35(20Q13.2) WILD-TYPE     18
D35V6, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           23                             15
  CLUS_2                           19                              2
  CLUS_3                           19                             30
  CLUS_4                           43                             19
  CLUS_5                           31                             10
  CLUS_6                           38                              2
  CLUS_7                            3                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(20Q13.2) MUTATED      107     74    111
  AMP PEAK 35(20Q13.2) WILD-TYPE     79     59     10
D35V7, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          107                             79
  CLUS_2                           74                             59
  CLUS_3                          111                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(20Q13.2) MUTATED       43    107     41    101
  AMP PEAK 35(20Q13.2) WILD-TYPE     36     68     38      6
D35V8, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           43                             36
  CLUS_2                          107                             68
  CLUS_3                           41                             38
  CLUS_4                          101                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(20Q13.2) MUTATED       65     30     38     36     26     29
  AMP PEAK 35(20Q13.2) WILD-TYPE     11     28     22     22     10     29
D35V9, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           65                             11
  CLUS_2                           30                             28
  CLUS_3                           38                             22
  CLUS_4                           36                             22
  CLUS_5                           26                             10
  CLUS_6                           29                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(20Q13.2) MUTATED      137     39     48
  AMP PEAK 35(20Q13.2) WILD-TYPE     64     34     24
D35V10, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          137                             64
  CLUS_2                           39                             34
  CLUS_3                           48                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 36(XQ27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED       32     17     13     19      5
  AMP PEAK 36(XQ27.3) WILD-TYPE     91    170     23     57     14
D36V1, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          32                            91
  CLUS_2                          17                           170
  CLUS_3                          13                            23
  CLUS_4                          19                            57
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(XQ27.3) MUTATED       26     32      7     10
  AMP PEAK 36(XQ27.3) WILD-TYPE     98     89     35     96
D36V2, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          26                            98
  CLUS_2                          32                            89
  CLUS_3                           7                            35
  CLUS_4                          10                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(XQ27.3) MUTATED       16     20     13
  AMP PEAK 36(XQ27.3) WILD-TYPE     66     70     78
D36V3, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          16                            66
  CLUS_2                          20                            70
  CLUS_3                          13                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(XQ27.3) MUTATED        7     15      9     18
  AMP PEAK 36(XQ27.3) WILD-TYPE     27     68     46     73
D36V4, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                           7                            27
  CLUS_2                          15                            68
  CLUS_3                           9                            46
  CLUS_4                          18                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED       10      8      9     10     12
  AMP PEAK 36(XQ27.3) WILD-TYPE     55     54     37     27     50
D36V5, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          10                            55
  CLUS_2                           8                            54
  CLUS_3                           9                            37
  CLUS_4                          10                            27
  CLUS_5                          12                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(XQ27.3) MUTATED        8      4      3     10     19      3
  AMP PEAK 36(XQ27.3) WILD-TYPE     30     17     46     52     22     37
                               vv
clus                            CLUS_7
  AMP PEAK 36(XQ27.3) MUTATED        2
  AMP PEAK 36(XQ27.3) WILD-TYPE     19
D36V6, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                           4                            17
  CLUS_3                           3                            46
  CLUS_4                          10                            52
  CLUS_5                          19                            22
  CLUS_6                           3                            37
  CLUS_7                           2                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(XQ27.3) MUTATED       42     17     27
  AMP PEAK 36(XQ27.3) WILD-TYPE    144    116     94
D36V7, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          42                           144
  CLUS_2                          17                           116
  CLUS_3                          27                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(XQ27.3) MUTATED       21     32     13     20
  AMP PEAK 36(XQ27.3) WILD-TYPE     58    143     66     87
D36V8, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          21                            58
  CLUS_2                          32                           143
  CLUS_3                          13                            66
  CLUS_4                          20                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(XQ27.3) MUTATED       16     14     11     13      8      3
  AMP PEAK 36(XQ27.3) WILD-TYPE     60     44     49     45     28     55
D36V9, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          16                            60
  CLUS_2                          14                            44
  CLUS_3                          11                            49
  CLUS_4                          13                            45
  CLUS_5                           8                            28
  CLUS_6                           3                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(XQ27.3) MUTATED       41      6     18
  AMP PEAK 36(XQ27.3) WILD-TYPE    160     67     54
D36V10, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          41                           160
  CLUS_2                           6                            67
  CLUS_3                          18                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       73     12      5     39      6
  DEL PEAK  1(1P36.11) WILD-TYPE     50    175     31     37     13
D37V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           73                             50
  CLUS_2                           12                            175
  CLUS_3                            5                             31
  CLUS_4                           39                             37
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       69     26      4     18
  DEL PEAK  1(1P36.11) WILD-TYPE     55     95     38     88
D37V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           69                             55
  CLUS_2                           26                             95
  CLUS_3                            4                             38
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       23     21     33
  DEL PEAK  1(1P36.11) WILD-TYPE     59     69     58
D37V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           23                             59
  CLUS_2                           21                             69
  CLUS_3                           33                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       13     36     10     18
  DEL PEAK  1(1P36.11) WILD-TYPE     21     47     45     73
D37V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           13                             21
  CLUS_2                           36                             47
  CLUS_3                           10                             45
  CLUS_4                           18                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       12      8     17     11     28
  DEL PEAK  1(1P36.11) WILD-TYPE     53     54     29     26     34
D37V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             53
  CLUS_2                            8                             54
  CLUS_3                           17                             29
  CLUS_4                           11                             26
  CLUS_5                           28                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       10      2      4     21     15     22
  DEL PEAK  1(1P36.11) WILD-TYPE     28     19     45     41     26     18
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED        2
  DEL PEAK  1(1P36.11) WILD-TYPE     19
D37V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           10                             28
  CLUS_2                            2                             19
  CLUS_3                            4                             45
  CLUS_4                           21                             41
  CLUS_5                           15                             26
  CLUS_6                           22                             18
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       53     25     56
  DEL PEAK  1(1P36.11) WILD-TYPE    133    108     65
D37V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           53                            133
  CLUS_2                           25                            108
  CLUS_3                           56                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       21     45     13     55
  DEL PEAK  1(1P36.11) WILD-TYPE     58    130     66     52
D37V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                           45                            130
  CLUS_3                           13                             66
  CLUS_4                           55                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       41     12     19     14     11      8
  DEL PEAK  1(1P36.11) WILD-TYPE     35     46     41     44     25     50
D37V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           41                             35
  CLUS_2                           12                             46
  CLUS_3                           19                             41
  CLUS_4                           14                             44
  CLUS_5                           11                             25
  CLUS_6                            8                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       71     11     23
  DEL PEAK  1(1P36.11) WILD-TYPE    130     62     49
D37V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           71                            130
  CLUS_2                           11                             62
  CLUS_3                           23                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       57      7      7     19      4
  DEL PEAK  2(1P13.2) WILD-TYPE     66    180     29     57     15
D38V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          57                            66
  CLUS_2                           7                           180
  CLUS_3                           7                            29
  CLUS_4                          19                            57
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       50     21      6      8
  DEL PEAK  2(1P13.2) WILD-TYPE     74    100     36     98
D38V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          50                            74
  CLUS_2                          21                           100
  CLUS_3                           6                            36
  CLUS_4                           8                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       12     15     25
  DEL PEAK  2(1P13.2) WILD-TYPE     70     75     66
D38V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          12                            70
  CLUS_2                          15                            75
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED        3     24      9     16
  DEL PEAK  2(1P13.2) WILD-TYPE     31     59     46     75
D38V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                          24                            59
  CLUS_3                           9                            46
  CLUS_4                          16                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        8      5      6      8     22
  DEL PEAK  2(1P13.2) WILD-TYPE     57     57     40     29     40
D38V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           8                            57
  CLUS_2                           5                            57
  CLUS_3                           6                            40
  CLUS_4                           8                            29
  CLUS_5                          22                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED        7      2      3     11     12     14
  DEL PEAK  2(1P13.2) WILD-TYPE     31     19     46     51     29     26
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P13.2) MUTATED        0
  DEL PEAK  2(1P13.2) WILD-TYPE     21
D38V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           7                            31
  CLUS_2                           2                            19
  CLUS_3                           3                            46
  CLUS_4                          11                            51
  CLUS_5                          12                            29
  CLUS_6                          14                            26
  CLUS_7                           0                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       35     19     39
  DEL PEAK  2(1P13.2) WILD-TYPE    151    114     82
D38V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          35                           151
  CLUS_2                          19                           114
  CLUS_3                          39                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       17     33      9     34
  DEL PEAK  2(1P13.2) WILD-TYPE     62    142     70     73
D38V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          17                            62
  CLUS_2                          33                           142
  CLUS_3                           9                            70
  CLUS_4                          34                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       25      8     12     10      8     11
  DEL PEAK  2(1P13.2) WILD-TYPE     51     50     48     48     28     47
D38V9, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          25                            51
  CLUS_2                           8                            50
  CLUS_3                          12                            48
  CLUS_4                          10                            48
  CLUS_5                           8                            28
  CLUS_6                          11                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       53      8     13
  DEL PEAK  2(1P13.2) WILD-TYPE    148     65     59
D38V10, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          53                           148
  CLUS_2                           8                            65
  CLUS_3                          13                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED       13      3      6      6      2
  DEL PEAK  3(1Q44) WILD-TYPE    110    184     30     70     17
D39V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        13                         110
  CLUS_2                         3                         184
  CLUS_3                         6                          30
  CLUS_4                         6                          70
  CLUS_5                         2                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       16      6      3      1
  DEL PEAK  3(1Q44) WILD-TYPE    108    115     39    105
D39V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                         108
  CLUS_2                         6                         115
  CLUS_3                         3                          39
  CLUS_4                         1                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        4      4     10
  DEL PEAK  3(1Q44) WILD-TYPE     78     86     81
D39V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                          78
  CLUS_2                         4                          86
  CLUS_3                        10                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        0      8      6      4
  DEL PEAK  3(1Q44) WILD-TYPE     34     75     49     87
D39V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         0                          34
  CLUS_2                         8                          75
  CLUS_3                         6                          49
  CLUS_4                         4                          87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        5      2      4      2      8
  DEL PEAK  3(1Q44) WILD-TYPE     60     60     42     35     54
D39V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          60
  CLUS_2                         2                          60
  CLUS_3                         4                          42
  CLUS_4                         2                          35
  CLUS_5                         8                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED        3      2      0      4      5      7      0
  DEL PEAK  3(1Q44) WILD-TYPE     35     19     49     58     36     33     21
D39V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         3                          35
  CLUS_2                         2                          19
  CLUS_3                         0                          49
  CLUS_4                         4                          58
  CLUS_5                         5                          36
  CLUS_6                         7                          33
  CLUS_7                         0                          21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       16      2     12
  DEL PEAK  3(1Q44) WILD-TYPE    170    131    109
D39V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                         170
  CLUS_2                         2                         131
  CLUS_3                        12                         109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        3     15      2     10
  DEL PEAK  3(1Q44) WILD-TYPE     76    160     77     97
D39V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         3                          76
  CLUS_2                        15                         160
  CLUS_3                         2                          77
  CLUS_4                        10                          97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        5      4      4      5      3      2
  DEL PEAK  3(1Q44) WILD-TYPE     71     54     56     53     33     56
D39V9, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          71
  CLUS_2                         4                          54
  CLUS_3                         4                          56
  CLUS_4                         5                          53
  CLUS_5                         3                          33
  CLUS_6                         2                          56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       20      1      2
  DEL PEAK  3(1Q44) WILD-TYPE    181     72     70
D39V10, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        20                         181
  CLUS_2                         1                          72
  CLUS_3                         2                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK  4(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q44) MUTATED       11      3      4      5      3
  DEL PEAK  4(1Q44) WILD-TYPE    112    184     32     71     16
D40V1, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        11                         112
  CLUS_2                         3                         184
  CLUS_3                         4                          32
  CLUS_4                         5                          71
  CLUS_5                         3                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q44) MUTATED       16      7      2      1
  DEL PEAK  4(1Q44) WILD-TYPE    108    114     40    105
D40V2, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        16                         108
  CLUS_2                         7                         114
  CLUS_3                         2                          40
  CLUS_4                         1                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED        2      4      7
  DEL PEAK  4(1Q44) WILD-TYPE     80     86     84
D40V3, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         2                          80
  CLUS_2                         4                          86
  CLUS_3                         7                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q44) MUTATED        0      3      4      6
  DEL PEAK  4(1Q44) WILD-TYPE     34     80     51     85
D40V4, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         0                          34
  CLUS_2                         3                          80
  CLUS_3                         4                          51
  CLUS_4                         6                          85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q44) MUTATED        4      3      3      1      6
  DEL PEAK  4(1Q44) WILD-TYPE     61     59     43     36     56
D40V5, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         4                          61
  CLUS_2                         3                          59
  CLUS_3                         3                          43
  CLUS_4                         1                          36
  CLUS_5                         6                          56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(1Q44) MUTATED        4      1      1      3      3      5      0
  DEL PEAK  4(1Q44) WILD-TYPE     34     20     48     59     38     35     21
D40V6, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         4                          34
  CLUS_2                         1                          20
  CLUS_3                         1                          48
  CLUS_4                         3                          59
  CLUS_5                         3                          38
  CLUS_6                         5                          35
  CLUS_7                         0                          21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       13      4      9
  DEL PEAK  4(1Q44) WILD-TYPE    173    129    112
D40V7, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        13                         173
  CLUS_2                         4                         129
  CLUS_3                         9                         112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q44) MUTATED        4     13      3      6
  DEL PEAK  4(1Q44) WILD-TYPE     75    162     76    101
D40V8, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         4                          75
  CLUS_2                        13                         162
  CLUS_3                         3                          76
  CLUS_4                         6                         101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1Q44) MUTATED        5      2      4      5      5      2
  DEL PEAK  4(1Q44) WILD-TYPE     71     56     56     53     31     56
D40V9, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         5                          71
  CLUS_2                         2                          56
  CLUS_3                         4                          56
  CLUS_4                         5                          53
  CLUS_5                         5                          31
  CLUS_6                         2                          56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       16      3      4
  DEL PEAK  4(1Q44) WILD-TYPE    185     70     68
D40V10, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        16                         185
  CLUS_2                         3                          70
  CLUS_3                         4                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK  5(2Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q32.1) MUTATED       28     12      7     15      2
  DEL PEAK  5(2Q32.1) WILD-TYPE     95    175     29     61     17
D41V1, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          28                            95
  CLUS_2                          12                           175
  CLUS_3                           7                            29
  CLUS_4                          15                            61
  CLUS_5                           2                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q32.1) MUTATED       29     18      1      8
  DEL PEAK  5(2Q32.1) WILD-TYPE     95    103     41     98
D41V2, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          29                            95
  CLUS_2                          18                           103
  CLUS_3                           1                            41
  CLUS_4                           8                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q32.1) MUTATED        8     14     14
  DEL PEAK  5(2Q32.1) WILD-TYPE     74     76     77
D41V3, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                           8                            74
  CLUS_2                          14                            76
  CLUS_3                          14                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q32.1) MUTATED        1     13      5     17
  DEL PEAK  5(2Q32.1) WILD-TYPE     33     70     50     74
D41V4, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                          13                            70
  CLUS_3                           5                            50
  CLUS_4                          17                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q32.1) MUTATED        3      7      9      4     11
  DEL PEAK  5(2Q32.1) WILD-TYPE     62     55     37     33     51
D41V5, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                           3                            62
  CLUS_2                           7                            55
  CLUS_3                           9                            37
  CLUS_4                           4                            33
  CLUS_5                          11                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q32.1) MUTATED        3      0      6      9      7      8
  DEL PEAK  5(2Q32.1) WILD-TYPE     35     21     43     53     34     32
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q32.1) MUTATED        1
  DEL PEAK  5(2Q32.1) WILD-TYPE     20
D41V6, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                           3                            35
  CLUS_2                           0                            21
  CLUS_3                           6                            43
  CLUS_4                           9                            53
  CLUS_5                           7                            34
  CLUS_6                           8                            32
  CLUS_7                           1                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q32.1) MUTATED       18     20     26
  DEL PEAK  5(2Q32.1) WILD-TYPE    168    113     95
D41V7, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          18                           168
  CLUS_2                          20                           113
  CLUS_3                          26                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q32.1) MUTATED        6     19     10     29
  DEL PEAK  5(2Q32.1) WILD-TYPE     73    156     69     78
D41V8, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                           6                            73
  CLUS_2                          19                           156
  CLUS_3                          10                            69
  CLUS_4                          29                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q32.1) MUTATED       17      6      7      8      2      9
  DEL PEAK  5(2Q32.1) WILD-TYPE     59     52     53     50     34     49
D41V9, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          17                            59
  CLUS_2                           6                            52
  CLUS_3                           7                            53
  CLUS_4                           8                            50
  CLUS_5                           2                            34
  CLUS_6                           9                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q32.1) MUTATED       28      6     15
  DEL PEAK  5(2Q32.1) WILD-TYPE    173     67     57
D41V10, multiclass
        clus
vv       DEL PEAK  5(2Q32.1) MUTATED DEL PEAK  5(2Q32.1) WILD-TYPE
  CLUS_1                          28                           173
  CLUS_2                           6                            67
  CLUS_3                          15                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK  6(2Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q33.3) MUTATED       24      8      7      9      1
  DEL PEAK  6(2Q33.3) WILD-TYPE     99    179     29     67     18
D42V1, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          24                            99
  CLUS_2                           8                           179
  CLUS_3                           7                            29
  CLUS_4                           9                            67
  CLUS_5                           1                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q33.3) MUTATED       22     13      2      9
  DEL PEAK  6(2Q33.3) WILD-TYPE    102    108     40     97
D42V2, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          22                           102
  CLUS_2                          13                           108
  CLUS_3                           2                            40
  CLUS_4                           9                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q33.3) MUTATED       12      8      8
  DEL PEAK  6(2Q33.3) WILD-TYPE     70     82     83
D42V3, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          12                            70
  CLUS_2                           8                            82
  CLUS_3                           8                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q33.3) MUTATED        2      8      8     10
  DEL PEAK  6(2Q33.3) WILD-TYPE     32     75     47     81
D42V4, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           8                            75
  CLUS_3                           8                            47
  CLUS_4                          10                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q33.3) MUTATED        5      3      6      4     11
  DEL PEAK  6(2Q33.3) WILD-TYPE     60     59     40     33     51
D42V5, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                           5                            60
  CLUS_2                           3                            59
  CLUS_3                           6                            40
  CLUS_4                           4                            33
  CLUS_5                          11                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q33.3) MUTATED        3      2      4      8      7      4
  DEL PEAK  6(2Q33.3) WILD-TYPE     35     19     45     54     34     36
                               vv
clus                            CLUS_7
  DEL PEAK  6(2Q33.3) MUTATED        1
  DEL PEAK  6(2Q33.3) WILD-TYPE     20
D42V6, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                           3                            35
  CLUS_2                           2                            19
  CLUS_3                           4                            45
  CLUS_4                           8                            54
  CLUS_5                           7                            34
  CLUS_6                           4                            36
  CLUS_7                           1                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q33.3) MUTATED       18     11     20
  DEL PEAK  6(2Q33.3) WILD-TYPE    168    122    101
D42V7, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          18                           168
  CLUS_2                          11                           122
  CLUS_3                          20                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q33.3) MUTATED        6     20      3     20
  DEL PEAK  6(2Q33.3) WILD-TYPE     73    155     76     87
D42V8, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                           6                            73
  CLUS_2                          20                           155
  CLUS_3                           3                            76
  CLUS_4                          20                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q33.3) MUTATED       11      6      9      6      0      5
  DEL PEAK  6(2Q33.3) WILD-TYPE     65     52     51     52     36     53
D42V9, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          11                            65
  CLUS_2                           6                            52
  CLUS_3                           9                            51
  CLUS_4                           6                            52
  CLUS_5                           0                            36
  CLUS_6                           5                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q33.3) MUTATED       24      3     10
  DEL PEAK  6(2Q33.3) WILD-TYPE    177     70     62
D42V10, multiclass
        clus
vv       DEL PEAK  6(2Q33.3) MUTATED DEL PEAK  6(2Q33.3) WILD-TYPE
  CLUS_1                          24                           177
  CLUS_2                           3                            70
  CLUS_3                          10                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK  7(2Q37.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q37.2) MUTATED       36     10      4     15      7
  DEL PEAK  7(2Q37.2) WILD-TYPE     87    177     32     61     12
D43V1, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          36                            87
  CLUS_2                          10                           177
  CLUS_3                           4                            32
  CLUS_4                          15                            61
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q37.2) MUTATED       38     14      1     14
  DEL PEAK  7(2Q37.2) WILD-TYPE     86    107     41     92
D43V2, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          38                            86
  CLUS_2                          14                           107
  CLUS_3                           1                            41
  CLUS_4                          14                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q37.2) MUTATED       14     10     17
  DEL PEAK  7(2Q37.2) WILD-TYPE     68     80     74
D43V3, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          14                            68
  CLUS_2                          10                            80
  CLUS_3                          17                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q37.2) MUTATED        3     18      9     11
  DEL PEAK  7(2Q37.2) WILD-TYPE     31     65     46     80
D43V4, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                          18                            65
  CLUS_3                           9                            46
  CLUS_4                          11                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q37.2) MUTATED        3      6     10      6     17
  DEL PEAK  7(2Q37.2) WILD-TYPE     62     56     36     31     45
D43V5, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                           3                            62
  CLUS_2                           6                            56
  CLUS_3                          10                            36
  CLUS_4                           6                            31
  CLUS_5                          17                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(2Q37.2) MUTATED        6      1      3     11      8     10
  DEL PEAK  7(2Q37.2) WILD-TYPE     32     20     46     51     33     30
                               vv
clus                            CLUS_7
  DEL PEAK  7(2Q37.2) MUTATED        3
  DEL PEAK  7(2Q37.2) WILD-TYPE     18
D43V6, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                           6                            32
  CLUS_2                           1                            20
  CLUS_3                           3                            46
  CLUS_4                          11                            51
  CLUS_5                           8                            33
  CLUS_6                          10                            30
  CLUS_7                           3                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q37.2) MUTATED       23     16     33
  DEL PEAK  7(2Q37.2) WILD-TYPE    163    117     88
D43V7, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          23                           163
  CLUS_2                          16                           117
  CLUS_3                          33                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q37.2) MUTATED        8     27      4     33
  DEL PEAK  7(2Q37.2) WILD-TYPE     71    148     75     74
D43V8, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                           8                            71
  CLUS_2                          27                           148
  CLUS_3                           4                            75
  CLUS_4                          33                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(2Q37.2) MUTATED       19      8     12     10      6      5
  DEL PEAK  7(2Q37.2) WILD-TYPE     57     50     48     48     30     53
D43V9, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          19                            57
  CLUS_2                           8                            50
  CLUS_3                          12                            48
  CLUS_4                          10                            48
  CLUS_5                           6                            30
  CLUS_6                           5                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q37.2) MUTATED       39      5     16
  DEL PEAK  7(2Q37.2) WILD-TYPE    162     68     56
D43V10, multiclass
        clus
vv       DEL PEAK  7(2Q37.2) MUTATED DEL PEAK  7(2Q37.2) WILD-TYPE
  CLUS_1                          39                           162
  CLUS_2                           5                            68
  CLUS_3                          16                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK  8(3P26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P26.1) MUTATED       65     19     16     36      7
  DEL PEAK  8(3P26.1) WILD-TYPE     58    168     20     40     12
D44V1, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          65                            58
  CLUS_2                          19                           168
  CLUS_3                          16                            20
  CLUS_4                          36                            40
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P26.1) MUTATED       67     33      9     20
  DEL PEAK  8(3P26.1) WILD-TYPE     57     88     33     86
D44V2, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          67                            57
  CLUS_2                          33                            88
  CLUS_3                           9                            33
  CLUS_4                          20                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P26.1) MUTATED       18     25     29
  DEL PEAK  8(3P26.1) WILD-TYPE     64     65     62
D44V3, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          18                            64
  CLUS_2                          25                            65
  CLUS_3                          29                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P26.1) MUTATED       11     28     10     23
  DEL PEAK  8(3P26.1) WILD-TYPE     23     55     45     68
D44V4, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          11                            23
  CLUS_2                          28                            55
  CLUS_3                          10                            45
  CLUS_4                          23                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P26.1) MUTATED       11     11     14     13     26
  DEL PEAK  8(3P26.1) WILD-TYPE     54     51     32     24     36
D44V5, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                          11                            51
  CLUS_3                          14                            32
  CLUS_4                          13                            24
  CLUS_5                          26                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P26.1) MUTATED        8      5      8     16     20     18
  DEL PEAK  8(3P26.1) WILD-TYPE     30     16     41     46     21     22
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P26.1) MUTATED        0
  DEL PEAK  8(3P26.1) WILD-TYPE     21
D44V6, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                           5                            16
  CLUS_3                           8                            41
  CLUS_4                          16                            46
  CLUS_5                          20                            21
  CLUS_6                          18                            22
  CLUS_7                           0                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P26.1) MUTATED       50     32     60
  DEL PEAK  8(3P26.1) WILD-TYPE    136    101     61
D44V7, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          50                           136
  CLUS_2                          32                           101
  CLUS_3                          60                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P26.1) MUTATED       22     45     17     58
  DEL PEAK  8(3P26.1) WILD-TYPE     57    130     62     49
D44V8, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          22                            57
  CLUS_2                          45                           130
  CLUS_3                          17                            62
  CLUS_4                          58                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P26.1) MUTATED       40     18     14     13     16     11
  DEL PEAK  8(3P26.1) WILD-TYPE     36     40     46     45     20     47
D44V9, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          40                            36
  CLUS_2                          18                            40
  CLUS_3                          14                            46
  CLUS_4                          13                            45
  CLUS_5                          16                            20
  CLUS_6                          11                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P26.1) MUTATED       78     14     20
  DEL PEAK  8(3P26.1) WILD-TYPE    123     59     52
D44V10, multiclass
        clus
vv       DEL PEAK  8(3P26.1) MUTATED DEL PEAK  8(3P26.1) WILD-TYPE
  CLUS_1                          78                           123
  CLUS_2                          14                            59
  CLUS_3                          20                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK  9(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       67     28     16     37     10
  DEL PEAK  9(3P14.2) WILD-TYPE     56    159     20     39      9
D45V1, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          67                            56
  CLUS_2                          28                           159
  CLUS_3                          16                            20
  CLUS_4                          37                            39
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED       70     41     15     19
  DEL PEAK  9(3P14.2) WILD-TYPE     54     80     27     87
D45V2, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          70                            54
  CLUS_2                          41                            80
  CLUS_3                          15                            27
  CLUS_4                          19                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       24     26     34
  DEL PEAK  9(3P14.2) WILD-TYPE     58     64     57
D45V3, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          24                            58
  CLUS_2                          26                            64
  CLUS_3                          34                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED       12     31     13     28
  DEL PEAK  9(3P14.2) WILD-TYPE     22     52     42     63
D45V4, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          12                            22
  CLUS_2                          31                            52
  CLUS_3                          13                            42
  CLUS_4                          28                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       16     10     15     13     34
  DEL PEAK  9(3P14.2) WILD-TYPE     49     52     31     24     28
D45V5, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          16                            49
  CLUS_2                          10                            52
  CLUS_3                          15                            31
  CLUS_4                          13                            24
  CLUS_5                          34                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P14.2) MUTATED       11      6      6     21     19     22
  DEL PEAK  9(3P14.2) WILD-TYPE     27     15     43     41     22     18
                               vv
clus                            CLUS_7
  DEL PEAK  9(3P14.2) MUTATED        3
  DEL PEAK  9(3P14.2) WILD-TYPE     18
D45V6, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          11                            27
  CLUS_2                           6                            15
  CLUS_3                           6                            43
  CLUS_4                          21                            41
  CLUS_5                          19                            22
  CLUS_6                          22                            18
  CLUS_7                           3                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       61     32     65
  DEL PEAK  9(3P14.2) WILD-TYPE    125    101     56
D45V7, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          61                           125
  CLUS_2                          32                           101
  CLUS_3                          65                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED       27     52     18     61
  DEL PEAK  9(3P14.2) WILD-TYPE     52    123     61     46
D45V8, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          27                            52
  CLUS_2                          52                           123
  CLUS_3                          18                            61
  CLUS_4                          61                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P14.2) MUTATED       40     20     22     19     13     11
  DEL PEAK  9(3P14.2) WILD-TYPE     36     38     38     39     23     47
D45V9, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          40                            36
  CLUS_2                          20                            38
  CLUS_3                          22                            38
  CLUS_4                          19                            39
  CLUS_5                          13                            23
  CLUS_6                          11                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       84     12     29
  DEL PEAK  9(3P14.2) WILD-TYPE    117     61     43
D45V10, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          84                           117
  CLUS_2                          12                            61
  CLUS_3                          29                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 10(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED       27      3      6     10      1
  DEL PEAK 10(3Q26.31) WILD-TYPE     96    184     30     66     18
D46V1, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           27                             96
  CLUS_2                            3                            184
  CLUS_3                            6                             30
  CLUS_4                           10                             66
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED       28     11      2      2
  DEL PEAK 10(3Q26.31) WILD-TYPE     96    110     40    104
D46V2, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           28                             96
  CLUS_2                           11                            110
  CLUS_3                            2                             40
  CLUS_4                            2                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       10      3     12
  DEL PEAK 10(3Q26.31) WILD-TYPE     72     87     79
D46V3, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           10                             72
  CLUS_2                            3                             87
  CLUS_3                           12                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED        4     12      6      3
  DEL PEAK 10(3Q26.31) WILD-TYPE     30     71     49     88
D46V4, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            4                             30
  CLUS_2                           12                             71
  CLUS_3                            6                             49
  CLUS_4                            3                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED        2      3      1      5     14
  DEL PEAK 10(3Q26.31) WILD-TYPE     63     59     45     32     48
D46V5, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                            3                             59
  CLUS_3                            1                             45
  CLUS_4                            5                             32
  CLUS_5                           14                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q26.31) MUTATED        3      1      1      1     10      9
  DEL PEAK 10(3Q26.31) WILD-TYPE     35     20     48     61     31     31
                                vv
clus                             CLUS_7
  DEL PEAK 10(3Q26.31) MUTATED        0
  DEL PEAK 10(3Q26.31) WILD-TYPE     21
D46V6, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            1                             20
  CLUS_3                            1                             48
  CLUS_4                            1                             61
  CLUS_5                           10                             31
  CLUS_6                            9                             31
  CLUS_7                            0                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       12      8     27
  DEL PEAK 10(3Q26.31) WILD-TYPE    174    125     94
D46V7, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           12                            174
  CLUS_2                            8                            125
  CLUS_3                           27                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED        6     14      5     22
  DEL PEAK 10(3Q26.31) WILD-TYPE     73    161     74     85
D46V8, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            6                             73
  CLUS_2                           14                            161
  CLUS_3                            5                             74
  CLUS_4                           22                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q26.31) MUTATED       16      5      3      4      7      2
  DEL PEAK 10(3Q26.31) WILD-TYPE     60     53     57     54     29     56
D46V9, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           16                             60
  CLUS_2                            5                             53
  CLUS_3                            3                             57
  CLUS_4                            4                             54
  CLUS_5                            7                             29
  CLUS_6                            2                             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       28      4      5
  DEL PEAK 10(3Q26.31) WILD-TYPE    173     69     67
D46V10, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           28                            173
  CLUS_2                            4                             69
  CLUS_3                            5                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 11(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       76     33     12     44      4
  DEL PEAK 11(4P16.3) WILD-TYPE     47    154     24     32     15
D47V1, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          76                            47
  CLUS_2                          33                           154
  CLUS_3                          12                            24
  CLUS_4                          44                            32
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       70     39      6     35
  DEL PEAK 11(4P16.3) WILD-TYPE     54     82     36     71
D47V2, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          70                            54
  CLUS_2                          39                            82
  CLUS_3                           6                            36
  CLUS_4                          35                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       27     38     35
  DEL PEAK 11(4P16.3) WILD-TYPE     55     52     56
D47V3, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          27                            55
  CLUS_2                          38                            52
  CLUS_3                          35                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       10     37     16     37
  DEL PEAK 11(4P16.3) WILD-TYPE     24     46     39     54
D47V4, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          10                            24
  CLUS_2                          37                            46
  CLUS_3                          16                            39
  CLUS_4                          37                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       11     23     15     11     38
  DEL PEAK 11(4P16.3) WILD-TYPE     54     39     31     26     24
D47V5, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                          23                            39
  CLUS_3                          15                            31
  CLUS_4                          11                            26
  CLUS_5                          38                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P16.3) MUTATED       10      4     18     18     17     28
  DEL PEAK 11(4P16.3) WILD-TYPE     28     17     31     44     24     12
                               vv
clus                            CLUS_7
  DEL PEAK 11(4P16.3) MUTATED        3
  DEL PEAK 11(4P16.3) WILD-TYPE     18
D47V6, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          10                            28
  CLUS_2                           4                            17
  CLUS_3                          18                            31
  CLUS_4                          18                            44
  CLUS_5                          17                            24
  CLUS_6                          28                            12
  CLUS_7                           3                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       53     49     67
  DEL PEAK 11(4P16.3) WILD-TYPE    133     84     54
D47V7, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          53                           133
  CLUS_2                          49                            84
  CLUS_3                          67                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       23     49     27     70
  DEL PEAK 11(4P16.3) WILD-TYPE     56    126     52     37
D47V8, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          23                            56
  CLUS_2                          49                           126
  CLUS_3                          27                            52
  CLUS_4                          70                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P16.3) MUTATED       44     20     13     17     17     24
  DEL PEAK 11(4P16.3) WILD-TYPE     32     38     47     41     19     34
D47V9, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          44                            32
  CLUS_2                          20                            38
  CLUS_3                          13                            47
  CLUS_4                          17                            41
  CLUS_5                          17                            19
  CLUS_6                          24                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       91     25     19
  DEL PEAK 11(4P16.3) WILD-TYPE    110     48     53
D47V10, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          91                           110
  CLUS_2                          25                            48
  CLUS_3                          19                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 12(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       83     30     17     55      8
  DEL PEAK 12(4Q22.1) WILD-TYPE     40    157     19     21     11
D48V1, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          83                            40
  CLUS_2                          30                           157
  CLUS_3                          17                            19
  CLUS_4                          55                            21
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       77     52      6     37
  DEL PEAK 12(4Q22.1) WILD-TYPE     47     69     36     69
D48V2, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          77                            47
  CLUS_2                          52                            69
  CLUS_3                           6                            36
  CLUS_4                          37                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       28     43     44
  DEL PEAK 12(4Q22.1) WILD-TYPE     54     47     47
D48V3, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          28                            54
  CLUS_2                          43                            47
  CLUS_3                          44                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       13     42     19     41
  DEL PEAK 12(4Q22.1) WILD-TYPE     21     41     36     50
D48V4, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          13                            21
  CLUS_2                          42                            41
  CLUS_3                          19                            36
  CLUS_4                          41                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       19     20     20     17     38
  DEL PEAK 12(4Q22.1) WILD-TYPE     46     42     26     20     24
D48V5, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          19                            46
  CLUS_2                          20                            42
  CLUS_3                          20                            26
  CLUS_4                          17                            20
  CLUS_5                          38                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       16      4     16     23     25     27
  DEL PEAK 12(4Q22.1) WILD-TYPE     22     17     33     39     16     13
                               vv
clus                            CLUS_7
  DEL PEAK 12(4Q22.1) MUTATED        3
  DEL PEAK 12(4Q22.1) WILD-TYPE     18
D48V6, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          16                            22
  CLUS_2                           4                            17
  CLUS_3                          16                            33
  CLUS_4                          23                            39
  CLUS_5                          25                            16
  CLUS_6                          27                            13
  CLUS_7                           3                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       71     51     70
  DEL PEAK 12(4Q22.1) WILD-TYPE    115     82     51
D48V7, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          71                           115
  CLUS_2                          51                            82
  CLUS_3                          70                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       30     70     27     65
  DEL PEAK 12(4Q22.1) WILD-TYPE     49    105     52     42
D48V8, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          30                            49
  CLUS_2                          70                           105
  CLUS_3                          27                            52
  CLUS_4                          65                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       39     23     24     26     15     21
  DEL PEAK 12(4Q22.1) WILD-TYPE     37     35     36     32     21     37
D48V9, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          39                            37
  CLUS_2                          23                            35
  CLUS_3                          24                            36
  CLUS_4                          26                            32
  CLUS_5                          15                            21
  CLUS_6                          21                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       94     24     30
  DEL PEAK 12(4Q22.1) WILD-TYPE    107     49     42
D48V10, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          94                           107
  CLUS_2                          24                            49
  CLUS_3                          30                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 13(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q34.3) MUTATED       88     31     14     59      8
  DEL PEAK 13(4Q34.3) WILD-TYPE     35    156     22     17     11
D49V1, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          88                            35
  CLUS_2                          31                           156
  CLUS_3                          14                            22
  CLUS_4                          59                            17
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       86     49      4     42
  DEL PEAK 13(4Q34.3) WILD-TYPE     38     72     38     64
D49V2, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          86                            38
  CLUS_2                          49                            72
  CLUS_3                           4                            38
  CLUS_4                          42                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       26     44     42
  DEL PEAK 13(4Q34.3) WILD-TYPE     56     46     49
D49V3, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          26                            56
  CLUS_2                          44                            46
  CLUS_3                          42                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       13     45     14     40
  DEL PEAK 13(4Q34.3) WILD-TYPE     21     38     41     51
D49V4, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          13                            21
  CLUS_2                          45                            38
  CLUS_3                          14                            41
  CLUS_4                          40                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q34.3) MUTATED       14     21     21     16     41
  DEL PEAK 13(4Q34.3) WILD-TYPE     51     41     25     21     21
D49V5, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          14                            51
  CLUS_2                          21                            41
  CLUS_3                          21                            25
  CLUS_4                          16                            21
  CLUS_5                          41                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q34.3) MUTATED       16      2     17     23     21     30
  DEL PEAK 13(4Q34.3) WILD-TYPE     22     19     32     39     20     10
                               vv
clus                            CLUS_7
  DEL PEAK 13(4Q34.3) MUTATED        4
  DEL PEAK 13(4Q34.3) WILD-TYPE     17
D49V6, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          16                            22
  CLUS_2                           2                            19
  CLUS_3                          17                            32
  CLUS_4                          23                            39
  CLUS_5                          21                            20
  CLUS_6                          30                            10
  CLUS_7                           4                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED       68     48     84
  DEL PEAK 13(4Q34.3) WILD-TYPE    118     85     37
D49V7, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          68                           118
  CLUS_2                          48                            85
  CLUS_3                          84                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q34.3) MUTATED       29     70     27     74
  DEL PEAK 13(4Q34.3) WILD-TYPE     50    105     52     33
D49V8, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                          70                           105
  CLUS_3                          27                            52
  CLUS_4                          74                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q34.3) MUTATED       48     27     21     24     19     22
  DEL PEAK 13(4Q34.3) WILD-TYPE     28     31     39     34     17     36
D49V9, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                          48                            28
  CLUS_2                          27                            31
  CLUS_3                          21                            39
  CLUS_4                          24                            34
  CLUS_5                          19                            17
  CLUS_6                          22                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q34.3) MUTATED      102     26     33
  DEL PEAK 13(4Q34.3) WILD-TYPE     99     47     39
D49V10, multiclass
        clus
vv       DEL PEAK 13(4Q34.3) MUTATED DEL PEAK 13(4Q34.3) WILD-TYPE
  CLUS_1                         102                            99
  CLUS_2                          26                            47
  CLUS_3                          33                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 14(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       92     16     11     41     10
  DEL PEAK 14(5Q12.1) WILD-TYPE     31    171     25     35      9
D50V1, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          92                            31
  CLUS_2                          16                           171
  CLUS_3                          11                            25
  CLUS_4                          41                            35
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       92     39      4     21
  DEL PEAK 14(5Q12.1) WILD-TYPE     32     82     38     85
D50V2, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          92                            32
  CLUS_2                          39                            82
  CLUS_3                           4                            38
  CLUS_4                          21                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       28     24     35
  DEL PEAK 14(5Q12.1) WILD-TYPE     54     66     56
D50V3, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          28                            54
  CLUS_2                          24                            66
  CLUS_3                          35                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       14     33     16     24
  DEL PEAK 14(5Q12.1) WILD-TYPE     20     50     39     67
D50V4, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          14                            20
  CLUS_2                          33                            50
  CLUS_3                          16                            39
  CLUS_4                          24                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       17      5     11     14     44
  DEL PEAK 14(5Q12.1) WILD-TYPE     48     57     35     23     18
D50V5, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          17                            48
  CLUS_2                           5                            57
  CLUS_3                          11                            35
  CLUS_4                          14                            23
  CLUS_5                          44                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q12.1) MUTATED       13      4      3     23     18     28
  DEL PEAK 14(5Q12.1) WILD-TYPE     25     17     46     39     23     12
                               vv
clus                            CLUS_7
  DEL PEAK 14(5Q12.1) MUTATED        2
  DEL PEAK 14(5Q12.1) WILD-TYPE     19
D50V6, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          13                            25
  CLUS_2                           4                            17
  CLUS_3                           3                            46
  CLUS_4                          23                            39
  CLUS_5                          18                            23
  CLUS_6                          28                            12
  CLUS_7                           2                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       60     27     83
  DEL PEAK 14(5Q12.1) WILD-TYPE    126    106     38
D50V7, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          60                           126
  CLUS_2                          27                           106
  CLUS_3                          83                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       26     55     11     78
  DEL PEAK 14(5Q12.1) WILD-TYPE     53    120     68     29
D50V8, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          26                            53
  CLUS_2                          55                           120
  CLUS_3                          11                            68
  CLUS_4                          78                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q12.1) MUTATED       52     22     22     19     15     11
  DEL PEAK 14(5Q12.1) WILD-TYPE     24     36     38     39     21     47
D50V9, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          52                            24
  CLUS_2                          22                            36
  CLUS_3                          22                            38
  CLUS_4                          19                            39
  CLUS_5                          15                            21
  CLUS_6                          11                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED      100     14     27
  DEL PEAK 14(5Q12.1) WILD-TYPE    101     59     45
D50V10, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                         100                           101
  CLUS_2                          14                            59
  CLUS_3                          27                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 15(5Q23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       90     12     11     35     10
  DEL PEAK 15(5Q23.2) WILD-TYPE     33    175     25     41      9
D51V1, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          90                            33
  CLUS_2                          12                           175
  CLUS_3                          11                            25
  CLUS_4                          35                            41
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.2) MUTATED       88     34      6     17
  DEL PEAK 15(5Q23.2) WILD-TYPE     36     87     36     89
D51V2, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          88                            36
  CLUS_2                          34                            87
  CLUS_3                           6                            36
  CLUS_4                          17                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.2) MUTATED       22     22     34
  DEL PEAK 15(5Q23.2) WILD-TYPE     60     68     57
D51V3, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          22                            60
  CLUS_2                          22                            68
  CLUS_3                          34                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.2) MUTATED       11     33     13     21
  DEL PEAK 15(5Q23.2) WILD-TYPE     23     50     42     70
D51V4, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          11                            23
  CLUS_2                          33                            50
  CLUS_3                          13                            42
  CLUS_4                          21                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       15      3     10     12     43
  DEL PEAK 15(5Q23.2) WILD-TYPE     50     59     36     25     19
D51V5, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          15                            50
  CLUS_2                           3                            59
  CLUS_3                          10                            36
  CLUS_4                          12                            25
  CLUS_5                          43                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q23.2) MUTATED        7      5      2     21     18     28
  DEL PEAK 15(5Q23.2) WILD-TYPE     31     16     47     41     23     12
                               vv
clus                            CLUS_7
  DEL PEAK 15(5Q23.2) MUTATED        2
  DEL PEAK 15(5Q23.2) WILD-TYPE     19
D51V6, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                           7                            31
  CLUS_2                           5                            16
  CLUS_3                           2                            47
  CLUS_4                          21                            41
  CLUS_5                          18                            23
  CLUS_6                          28                            12
  CLUS_7                           2                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.2) MUTATED       54     22     81
  DEL PEAK 15(5Q23.2) WILD-TYPE    132    111     40
D51V7, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          54                           132
  CLUS_2                          22                           111
  CLUS_3                          81                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.2) MUTATED       22     54     10     71
  DEL PEAK 15(5Q23.2) WILD-TYPE     57    121     69     36
D51V8, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          22                            57
  CLUS_2                          54                           121
  CLUS_3                          10                            69
  CLUS_4                          71                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q23.2) MUTATED       53     20     16     17     14     10
  DEL PEAK 15(5Q23.2) WILD-TYPE     23     38     44     41     22     48
D51V9, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          53                            23
  CLUS_2                          20                            38
  CLUS_3                          16                            44
  CLUS_4                          17                            41
  CLUS_5                          14                            22
  CLUS_6                          10                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.2) MUTATED       93     12     25
  DEL PEAK 15(5Q23.2) WILD-TYPE    108     61     47
D51V10, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          93                           108
  CLUS_2                          12                            61
  CLUS_3                          25                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 16(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED       51     21      8     30      5
  DEL PEAK 16(6P25.3) WILD-TYPE     72    166     28     46     14
D52V1, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          51                            72
  CLUS_2                          21                           166
  CLUS_3                           8                            28
  CLUS_4                          30                            46
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       54     33      3     18
  DEL PEAK 16(6P25.3) WILD-TYPE     70     88     39     88
D52V2, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          54                            70
  CLUS_2                          33                            88
  CLUS_3                           3                            39
  CLUS_4                          18                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       20     14     25
  DEL PEAK 16(6P25.3) WILD-TYPE     62     76     66
D52V3, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          20                            62
  CLUS_2                          14                            76
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED        6     20     14     19
  DEL PEAK 16(6P25.3) WILD-TYPE     28     63     41     72
D52V4, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           6                            28
  CLUS_2                          20                            63
  CLUS_3                          14                            41
  CLUS_4                          19                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED        7      6     14      6     24
  DEL PEAK 16(6P25.3) WILD-TYPE     58     56     32     31     38
D52V5, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           7                            58
  CLUS_2                           6                            56
  CLUS_3                          14                            32
  CLUS_4                           6                            31
  CLUS_5                          24                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED       10      0      4     15      9     18
  DEL PEAK 16(6P25.3) WILD-TYPE     28     21     45     47     32     22
                               vv
clus                            CLUS_7
  DEL PEAK 16(6P25.3) MUTATED        1
  DEL PEAK 16(6P25.3) WILD-TYPE     20
D52V6, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          10                            28
  CLUS_2                           0                            21
  CLUS_3                           4                            45
  CLUS_4                          15                            47
  CLUS_5                           9                            32
  CLUS_6                          18                            22
  CLUS_7                           1                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       40     24     51
  DEL PEAK 16(6P25.3) WILD-TYPE    146    109     70
D52V7, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          40                           146
  CLUS_2                          24                           109
  CLUS_3                          51                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       12     47     10     46
  DEL PEAK 16(6P25.3) WILD-TYPE     67    128     69     61
D52V8, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          12                            67
  CLUS_2                          47                           128
  CLUS_3                          10                            69
  CLUS_4                          46                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED       26     20     18     13      8      9
  DEL PEAK 16(6P25.3) WILD-TYPE     50     38     42     45     28     49
D52V9, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          26                            50
  CLUS_2                          20                            38
  CLUS_3                          18                            42
  CLUS_4                          13                            45
  CLUS_5                           8                            28
  CLUS_6                           9                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       58     12     24
  DEL PEAK 16(6P25.3) WILD-TYPE    143     61     48
D52V10, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          58                           143
  CLUS_2                          12                            61
  CLUS_3                          24                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 17(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED       30     13     10     30      6
  DEL PEAK 17(6Q14.1) WILD-TYPE     93    174     26     46     13
D53V1, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          30                            93
  CLUS_2                          13                           174
  CLUS_3                          10                            26
  CLUS_4                          30                            46
  CLUS_5                           6                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q14.1) MUTATED       41     20      3     15
  DEL PEAK 17(6Q14.1) WILD-TYPE     83    101     39     91
D53V2, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          41                            83
  CLUS_2                          20                           101
  CLUS_3                           3                            39
  CLUS_4                          15                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q14.1) MUTATED       11     14     21
  DEL PEAK 17(6Q14.1) WILD-TYPE     71     76     70
D53V3, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          11                            71
  CLUS_2                          14                            76
  CLUS_3                          21                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q14.1) MUTATED        6     17      8     15
  DEL PEAK 17(6Q14.1) WILD-TYPE     28     66     47     76
D53V4, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                           6                            28
  CLUS_2                          17                            66
  CLUS_3                           8                            47
  CLUS_4                          15                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED        7      4     17      6     14
  DEL PEAK 17(6Q14.1) WILD-TYPE     58     58     29     31     48
D53V5, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                           7                            58
  CLUS_2                           4                            58
  CLUS_3                          17                            29
  CLUS_4                           6                            31
  CLUS_5                          14                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q14.1) MUTATED        5      2      3     18      5     13
  DEL PEAK 17(6Q14.1) WILD-TYPE     33     19     46     44     36     27
                               vv
clus                            CLUS_7
  DEL PEAK 17(6Q14.1) MUTATED        2
  DEL PEAK 17(6Q14.1) WILD-TYPE     19
D53V6, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                           5                            33
  CLUS_2                           2                            19
  CLUS_3                           3                            46
  CLUS_4                          18                            44
  CLUS_5                           5                            36
  CLUS_6                          13                            27
  CLUS_7                           2                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q14.1) MUTATED       36     21     32
  DEL PEAK 17(6Q14.1) WILD-TYPE    150    112     89
D53V7, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          36                           150
  CLUS_2                          21                           112
  CLUS_3                          32                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q14.1) MUTATED        8     44      8     29
  DEL PEAK 17(6Q14.1) WILD-TYPE     71    131     71     78
D53V8, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                           8                            71
  CLUS_2                          44                           131
  CLUS_3                           8                            71
  CLUS_4                          29                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q14.1) MUTATED       17     15     12     12      6      4
  DEL PEAK 17(6Q14.1) WILD-TYPE     59     43     48     46     30     54
D53V9, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          17                            59
  CLUS_2                          15                            43
  CLUS_3                          12                            48
  CLUS_4                          12                            46
  CLUS_5                           6                            30
  CLUS_6                           4                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q14.1) MUTATED       40      9     17
  DEL PEAK 17(6Q14.1) WILD-TYPE    161     64     55
D53V10, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          40                           161
  CLUS_2                           9                            64
  CLUS_3                          17                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 18(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED       26     11     11     24      6
  DEL PEAK 18(6Q24.3) WILD-TYPE     97    176     25     52     13
D54V1, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          26                            97
  CLUS_2                          11                           176
  CLUS_3                          11                            25
  CLUS_4                          24                            52
  CLUS_5                           6                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q24.3) MUTATED       35     15      3     15
  DEL PEAK 18(6Q24.3) WILD-TYPE     89    106     39     91
D54V2, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          35                            89
  CLUS_2                          15                           106
  CLUS_3                           3                            39
  CLUS_4                          15                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q24.3) MUTATED       12     11     14
  DEL PEAK 18(6Q24.3) WILD-TYPE     70     79     77
D54V3, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          12                            70
  CLUS_2                          11                            79
  CLUS_3                          14                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q24.3) MUTATED        4     12      8     13
  DEL PEAK 18(6Q24.3) WILD-TYPE     30     71     47     78
D54V4, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                          12                            71
  CLUS_3                           8                            47
  CLUS_4                          13                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED        6      4     10      5     16
  DEL PEAK 18(6Q24.3) WILD-TYPE     59     58     36     32     46
D54V5, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                           6                            59
  CLUS_2                           4                            58
  CLUS_3                          10                            36
  CLUS_4                           5                            32
  CLUS_5                          16                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(6Q24.3) MUTATED        4      2      3     11      7     13
  DEL PEAK 18(6Q24.3) WILD-TYPE     34     19     46     51     34     27
                               vv
clus                            CLUS_7
  DEL PEAK 18(6Q24.3) MUTATED        1
  DEL PEAK 18(6Q24.3) WILD-TYPE     20
D54V6, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                           4                            34
  CLUS_2                           2                            19
  CLUS_3                           3                            46
  CLUS_4                          11                            51
  CLUS_5                           7                            34
  CLUS_6                          13                            27
  CLUS_7                           1                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q24.3) MUTATED       33     18     26
  DEL PEAK 18(6Q24.3) WILD-TYPE    153    115     95
D54V7, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          33                           153
  CLUS_2                          18                           115
  CLUS_3                          26                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q24.3) MUTATED       10     35      7     25
  DEL PEAK 18(6Q24.3) WILD-TYPE     69    140     72     82
D54V8, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          10                            69
  CLUS_2                          35                           140
  CLUS_3                           7                            72
  CLUS_4                          25                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(6Q24.3) MUTATED       18     16      8      9      5      3
  DEL PEAK 18(6Q24.3) WILD-TYPE     58     42     52     49     31     55
D54V9, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          18                            58
  CLUS_2                          16                            42
  CLUS_3                           8                            52
  CLUS_4                           9                            49
  CLUS_5                           5                            31
  CLUS_6                           3                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q24.3) MUTATED       38      6     15
  DEL PEAK 18(6Q24.3) WILD-TYPE    163     67     57
D54V10, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          38                           163
  CLUS_2                           6                            67
  CLUS_3                          15                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 19(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED       36     21     12     29      4
  DEL PEAK 19(6Q26) WILD-TYPE     87    166     24     47     15
D55V1, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        36                          87
  CLUS_2                        21                         166
  CLUS_3                        12                          24
  CLUS_4                        29                          47
  CLUS_5                         4                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6Q26) MUTATED       40     24      6     21
  DEL PEAK 19(6Q26) WILD-TYPE     84     97     36     85
D55V2, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        40                          84
  CLUS_2                        24                          97
  CLUS_3                         6                          36
  CLUS_4                        21                          85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q26) MUTATED       18     16     19
  DEL PEAK 19(6Q26) WILD-TYPE     64     74     72
D55V3, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        18                          64
  CLUS_2                        16                          74
  CLUS_3                        19                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6Q26) MUTATED        5     20     11     17
  DEL PEAK 19(6Q26) WILD-TYPE     29     63     44     74
D55V4, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                         5                          29
  CLUS_2                        20                          63
  CLUS_3                        11                          44
  CLUS_4                        17                          74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED       13      5     16      4     20
  DEL PEAK 19(6Q26) WILD-TYPE     52     57     30     33     42
D55V5, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        13                          52
  CLUS_2                         5                          57
  CLUS_3                        16                          30
  CLUS_4                         4                          33
  CLUS_5                        20                          42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(6Q26) MUTATED       12      3      3     17      8     14      1
  DEL PEAK 19(6Q26) WILD-TYPE     26     18     46     45     33     26     20
D55V6, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        12                          26
  CLUS_2                         3                          18
  CLUS_3                         3                          46
  CLUS_4                        17                          45
  CLUS_5                         8                          33
  CLUS_6                        14                          26
  CLUS_7                         1                          20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q26) MUTATED       39     25     38
  DEL PEAK 19(6Q26) WILD-TYPE    147    108     83
D55V7, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        39                         147
  CLUS_2                        25                         108
  CLUS_3                        38                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6Q26) MUTATED       14     47      9     32
  DEL PEAK 19(6Q26) WILD-TYPE     65    128     70     75
D55V8, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        14                          65
  CLUS_2                        47                         128
  CLUS_3                         9                          70
  CLUS_4                        32                          75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(6Q26) MUTATED       21     19     14     14      6      3
  DEL PEAK 19(6Q26) WILD-TYPE     55     39     46     44     30     55
D55V9, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        21                          55
  CLUS_2                        19                          39
  CLUS_3                        14                          46
  CLUS_4                        14                          44
  CLUS_5                         6                          30
  CLUS_6                         3                          55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q26) MUTATED       57      7     13
  DEL PEAK 19(6Q26) WILD-TYPE    144     66     59
D55V10, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        57                         144
  CLUS_2                         7                          66
  CLUS_3                        13                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 20(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED       33     10      1     23      4
  DEL PEAK 20(7Q31.1) WILD-TYPE     90    177     35     53     15
D56V1, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          33                            90
  CLUS_2                          10                           177
  CLUS_3                           1                            35
  CLUS_4                          23                            53
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       30     23      3      7
  DEL PEAK 20(7Q31.1) WILD-TYPE     94     98     39     99
D56V2, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          30                            94
  CLUS_2                          23                            98
  CLUS_3                           3                            39
  CLUS_4                           7                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       11     16     13
  DEL PEAK 20(7Q31.1) WILD-TYPE     71     74     78
D56V3, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          11                            71
  CLUS_2                          16                            74
  CLUS_3                          13                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED        8     13      7     12
  DEL PEAK 20(7Q31.1) WILD-TYPE     26     70     48     79
D56V4, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                           8                            26
  CLUS_2                          13                            70
  CLUS_3                           7                            48
  CLUS_4                          12                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED        5      8      5      5     19
  DEL PEAK 20(7Q31.1) WILD-TYPE     60     54     41     32     43
D56V5, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                           5                            60
  CLUS_2                           8                            54
  CLUS_3                           5                            41
  CLUS_4                           5                            32
  CLUS_5                          19                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q31.1) MUTATED        7      2      5     10      6     11
  DEL PEAK 20(7Q31.1) WILD-TYPE     31     19     44     52     35     29
                               vv
clus                            CLUS_7
  DEL PEAK 20(7Q31.1) MUTATED        1
  DEL PEAK 20(7Q31.1) WILD-TYPE     20
D56V6, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                           7                            31
  CLUS_2                           2                            19
  CLUS_3                           5                            44
  CLUS_4                          10                            52
  CLUS_5                           6                            35
  CLUS_6                          11                            29
  CLUS_7                           1                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       26     12     32
  DEL PEAK 20(7Q31.1) WILD-TYPE    160    121     89
D56V7, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          26                           160
  CLUS_2                          12                           121
  CLUS_3                          32                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       11     24      9     26
  DEL PEAK 20(7Q31.1) WILD-TYPE     68    151     70     81
D56V8, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          11                            68
  CLUS_2                          24                           151
  CLUS_3                           9                            70
  CLUS_4                          26                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q31.1) MUTATED       20      8      7     13      5      5
  DEL PEAK 20(7Q31.1) WILD-TYPE     56     50     53     45     31     53
D56V9, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          20                            56
  CLUS_2                           8                            50
  CLUS_3                           7                            53
  CLUS_4                          13                            45
  CLUS_5                           5                            31
  CLUS_6                           5                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       33      8     17
  DEL PEAK 20(7Q31.1) WILD-TYPE    168     65     55
D56V10, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          33                           168
  CLUS_2                           8                            65
  CLUS_3                          17                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 21(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED       50      8      1     31      8
  DEL PEAK 21(7Q36.3) WILD-TYPE     73    179     35     45     11
D57V1, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          50                            73
  CLUS_2                           8                           179
  CLUS_3                           1                            35
  CLUS_4                          31                            45
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.3) MUTATED       46     29      0     14
  DEL PEAK 21(7Q36.3) WILD-TYPE     78     92     42     92
D57V2, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          46                            78
  CLUS_2                          29                            92
  CLUS_3                           0                            42
  CLUS_4                          14                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.3) MUTATED       13     17     22
  DEL PEAK 21(7Q36.3) WILD-TYPE     69     73     69
D57V3, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          13                            69
  CLUS_2                          17                            73
  CLUS_3                          22                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.3) MUTATED        9     22      6     15
  DEL PEAK 21(7Q36.3) WILD-TYPE     25     61     49     76
D57V4, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                           9                            25
  CLUS_2                          22                            61
  CLUS_3                           6                            49
  CLUS_4                          15                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED        7      8      8      3     27
  DEL PEAK 21(7Q36.3) WILD-TYPE     58     54     38     34     35
D57V5, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                           7                            58
  CLUS_2                           8                            54
  CLUS_3                           8                            38
  CLUS_4                           3                            34
  CLUS_5                          27                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(7Q36.3) MUTATED       12      0      6     13      7     15
  DEL PEAK 21(7Q36.3) WILD-TYPE     26     21     43     49     34     25
                               vv
clus                            CLUS_7
  DEL PEAK 21(7Q36.3) MUTATED        0
  DEL PEAK 21(7Q36.3) WILD-TYPE     21
D57V6, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          12                            26
  CLUS_2                           0                            21
  CLUS_3                           6                            43
  CLUS_4                          13                            49
  CLUS_5                           7                            34
  CLUS_6                          15                            25
  CLUS_7                           0                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.3) MUTATED       36     14     48
  DEL PEAK 21(7Q36.3) WILD-TYPE    150    119     73
D57V7, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          36                           150
  CLUS_2                          14                           119
  CLUS_3                          48                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.3) MUTATED       14     33      7     44
  DEL PEAK 21(7Q36.3) WILD-TYPE     65    142     72     63
D57V8, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          14                            65
  CLUS_2                          33                           142
  CLUS_3                           7                            72
  CLUS_4                          44                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(7Q36.3) MUTATED       30     10     13     14     10      6
  DEL PEAK 21(7Q36.3) WILD-TYPE     46     48     47     44     26     52
D57V9, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          30                            46
  CLUS_2                          10                            48
  CLUS_3                          13                            47
  CLUS_4                          14                            44
  CLUS_5                          10                            26
  CLUS_6                           6                            52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.3) MUTATED       56      8     19
  DEL PEAK 21(7Q36.3) WILD-TYPE    145     65     53
D57V10, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          56                           145
  CLUS_2                           8                            65
  CLUS_3                          19                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 22(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.3) MUTATED       61     16     16     33      0
  DEL PEAK 22(8P23.3) WILD-TYPE     62    171     20     43     19
D58V1, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          61                            62
  CLUS_2                          16                           171
  CLUS_3                          16                            20
  CLUS_4                          33                            43
  CLUS_5                           0                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.3) MUTATED       61     27      3     22
  DEL PEAK 22(8P23.3) WILD-TYPE     63     94     39     84
D58V2, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          61                            63
  CLUS_2                          27                            94
  CLUS_3                           3                            39
  CLUS_4                          22                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.3) MUTATED       20     21     34
  DEL PEAK 22(8P23.3) WILD-TYPE     62     69     57
D58V3, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          20                            62
  CLUS_2                          21                            69
  CLUS_3                          34                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.3) MUTATED        7     27     14     27
  DEL PEAK 22(8P23.3) WILD-TYPE     27     56     41     64
D58V4, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                           7                            27
  CLUS_2                          27                            56
  CLUS_3                          14                            41
  CLUS_4                          27                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.3) MUTATED       11      9      8     10     34
  DEL PEAK 22(8P23.3) WILD-TYPE     54     53     38     27     28
D58V5, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                           9                            53
  CLUS_3                           8                            38
  CLUS_4                          10                            27
  CLUS_5                          34                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(8P23.3) MUTATED        9      2      6     13     15     25
  DEL PEAK 22(8P23.3) WILD-TYPE     29     19     43     49     26     15
                               vv
clus                            CLUS_7
  DEL PEAK 22(8P23.3) MUTATED        2
  DEL PEAK 22(8P23.3) WILD-TYPE     19
D58V6, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                           9                            29
  CLUS_2                           2                            19
  CLUS_3                           6                            43
  CLUS_4                          13                            49
  CLUS_5                          15                            26
  CLUS_6                          25                            15
  CLUS_7                           2                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.3) MUTATED       45     25     55
  DEL PEAK 22(8P23.3) WILD-TYPE    141    108     66
D58V7, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          45                           141
  CLUS_2                          25                           108
  CLUS_3                          55                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.3) MUTATED       21     40     14     50
  DEL PEAK 22(8P23.3) WILD-TYPE     58    135     65     57
D58V8, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          21                            58
  CLUS_2                          40                           135
  CLUS_3                          14                            65
  CLUS_4                          50                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(8P23.3) MUTATED       36     14     16     13     10     12
  DEL PEAK 22(8P23.3) WILD-TYPE     40     44     44     45     26     46
D58V9, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          36                            40
  CLUS_2                          14                            44
  CLUS_3                          16                            44
  CLUS_4                          13                            45
  CLUS_5                          10                            26
  CLUS_6                          12                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.3) MUTATED       74      8     19
  DEL PEAK 22(8P23.3) WILD-TYPE    127     65     53
D58V10, multiclass
        clus
vv       DEL PEAK 22(8P23.3) MUTATED DEL PEAK 22(8P23.3) WILD-TYPE
  CLUS_1                          74                           127
  CLUS_2                           8                            65
  CLUS_3                          19                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 23(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       72     27     23     61     12
  DEL PEAK 23(9P23) WILD-TYPE     51    160     13     15      7
D59V1, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        72                          51
  CLUS_2                        27                         160
  CLUS_3                        23                          13
  CLUS_4                        61                          15
  CLUS_5                        12                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       84     46      9     37
  DEL PEAK 23(9P23) WILD-TYPE     40     75     33     69
D59V2, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        84                          40
  CLUS_2                        46                          75
  CLUS_3                         9                          33
  CLUS_4                        37                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       25     38     46
  DEL PEAK 23(9P23) WILD-TYPE     57     52     45
D59V3, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        25                          57
  CLUS_2                        38                          52
  CLUS_3                        46                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       12     41     11     45
  DEL PEAK 23(9P23) WILD-TYPE     22     42     44     46
D59V4, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        12                          22
  CLUS_2                        41                          42
  CLUS_3                        11                          44
  CLUS_4                        45                          46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       14     18     23     13     40
  DEL PEAK 23(9P23) WILD-TYPE     51     44     23     24     22
D59V5, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        14                          51
  CLUS_2                        18                          44
  CLUS_3                        23                          23
  CLUS_4                        13                          24
  CLUS_5                        40                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 23(9P23) MUTATED       18      5     14     28     18     23      2
  DEL PEAK 23(9P23) WILD-TYPE     20     16     35     34     23     17     19
D59V6, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        18                          20
  CLUS_2                         5                          16
  CLUS_3                        14                          35
  CLUS_4                        28                          34
  CLUS_5                        18                          23
  CLUS_6                        23                          17
  CLUS_7                         2                          19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       68     51     75
  DEL PEAK 23(9P23) WILD-TYPE    118     82     46
D59V7, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        68                         118
  CLUS_2                        51                          82
  CLUS_3                        75                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       27     72     28     67
  DEL PEAK 23(9P23) WILD-TYPE     52    103     51     40
D59V8, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        27                          52
  CLUS_2                        72                         103
  CLUS_3                        28                          51
  CLUS_4                        67                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P23) MUTATED       44     25     27     22     16     21
  DEL PEAK 23(9P23) WILD-TYPE     32     33     33     36     20     37
D59V9, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        44                          32
  CLUS_2                        25                          33
  CLUS_3                        27                          33
  CLUS_4                        22                          36
  CLUS_5                        16                          20
  CLUS_6                        21                          37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED      103     21     31
  DEL PEAK 23(9P23) WILD-TYPE     98     52     41
D59V10, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                       103                          98
  CLUS_2                        21                          52
  CLUS_3                        31                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 24(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       73     29     21     59     11
  DEL PEAK 24(9P21.3) WILD-TYPE     50    158     15     17      8
D60V1, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          73                            50
  CLUS_2                          29                           158
  CLUS_3                          21                            15
  CLUS_4                          59                            17
  CLUS_5                          11                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED       90     47      1     37
  DEL PEAK 24(9P21.3) WILD-TYPE     34     74     41     69
D60V2, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          90                            34
  CLUS_2                          47                            74
  CLUS_3                           1                            41
  CLUS_4                          37                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       17     41     47
  DEL PEAK 24(9P21.3) WILD-TYPE     65     49     44
D60V3, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          17                            65
  CLUS_2                          41                            49
  CLUS_3                          47                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED        8     45     10     42
  DEL PEAK 24(9P21.3) WILD-TYPE     26     38     45     49
D60V4, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                           8                            26
  CLUS_2                          45                            38
  CLUS_3                          10                            45
  CLUS_4                          42                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED        9     18     23     15     43
  DEL PEAK 24(9P21.3) WILD-TYPE     56     44     23     22     19
D60V5, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                           9                            56
  CLUS_2                          18                            44
  CLUS_3                          23                            23
  CLUS_4                          15                            22
  CLUS_5                          43                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9P21.3) MUTATED       19      1     11     30     18     27
  DEL PEAK 24(9P21.3) WILD-TYPE     19     20     38     32     23     13
                               vv
clus                            CLUS_7
  DEL PEAK 24(9P21.3) MUTATED        2
  DEL PEAK 24(9P21.3) WILD-TYPE     19
D60V6, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          19                            19
  CLUS_2                           1                            20
  CLUS_3                          11                            38
  CLUS_4                          30                            32
  CLUS_5                          18                            23
  CLUS_6                          27                            13
  CLUS_7                           2                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       65     50     77
  DEL PEAK 24(9P21.3) WILD-TYPE    121     83     44
D60V7, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          65                           121
  CLUS_2                          50                            83
  CLUS_3                          77                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED       25     71     27     69
  DEL PEAK 24(9P21.3) WILD-TYPE     54    104     52     38
D60V8, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          25                            54
  CLUS_2                          71                           104
  CLUS_3                          27                            52
  CLUS_4                          69                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9P21.3) MUTATED       45     25     23     21     20     21
  DEL PEAK 24(9P21.3) WILD-TYPE     31     33     37     37     16     37
D60V9, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          45                            31
  CLUS_2                          25                            33
  CLUS_3                          23                            37
  CLUS_4                          21                            37
  CLUS_5                          20                            16
  CLUS_6                          21                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED      101     24     30
  DEL PEAK 24(9P21.3) WILD-TYPE    100     49     42
D60V10, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                         101                           100
  CLUS_2                          24                            49
  CLUS_3                          30                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 25(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED       48     12     12     37      5
  DEL PEAK 25(9Q21.11) WILD-TYPE     75    175     24     39     14
D61V1, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           48                             75
  CLUS_2                           12                            175
  CLUS_3                           12                             24
  CLUS_4                           37                             39
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       53     26      2     24
  DEL PEAK 25(9Q21.11) WILD-TYPE     71     95     40     82
D61V2, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           53                             71
  CLUS_2                           26                             95
  CLUS_3                            2                             40
  CLUS_4                           24                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       14     23     27
  DEL PEAK 25(9Q21.11) WILD-TYPE     68     67     64
D61V3, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           14                             68
  CLUS_2                           23                             67
  CLUS_3                           27                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED        6     23      7     28
  DEL PEAK 25(9Q21.11) WILD-TYPE     28     60     48     63
D61V4, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                            6                             28
  CLUS_2                           23                             60
  CLUS_3                            7                             48
  CLUS_4                           28                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED        8     12     13      6     26
  DEL PEAK 25(9Q21.11) WILD-TYPE     57     50     33     31     36
D61V5, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                            8                             57
  CLUS_2                           12                             50
  CLUS_3                           13                             33
  CLUS_4                            6                             31
  CLUS_5                           26                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q21.11) MUTATED        7      2     10     18      9     17
  DEL PEAK 25(9Q21.11) WILD-TYPE     31     19     39     44     32     23
                                vv
clus                             CLUS_7
  DEL PEAK 25(9Q21.11) MUTATED        2
  DEL PEAK 25(9Q21.11) WILD-TYPE     19
D61V6, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                            2                             19
  CLUS_3                           10                             39
  CLUS_4                           18                             44
  CLUS_5                            9                             32
  CLUS_6                           17                             23
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       34     29     51
  DEL PEAK 25(9Q21.11) WILD-TYPE    152    104     70
D61V7, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           34                            152
  CLUS_2                           29                            104
  CLUS_3                           51                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       13     34     17     50
  DEL PEAK 25(9Q21.11) WILD-TYPE     66    141     62     57
D61V8, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           13                             66
  CLUS_2                           34                            141
  CLUS_3                           17                             62
  CLUS_4                           50                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q21.11) MUTATED       32     12     12     13     11     14
  DEL PEAK 25(9Q21.11) WILD-TYPE     44     46     48     45     25     44
D61V9, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           32                             44
  CLUS_2                           12                             46
  CLUS_3                           12                             48
  CLUS_4                           13                             45
  CLUS_5                           11                             25
  CLUS_6                           14                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       63     14     17
  DEL PEAK 25(9Q21.11) WILD-TYPE    138     59     55
D61V10, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           63                            138
  CLUS_2                           14                             59
  CLUS_3                           17                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 26(10P12.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P12.31) MUTATED       34     11      3     12      7
  DEL PEAK 26(10P12.31) WILD-TYPE     89    176     33     64     12
D62V1, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            34                              89
  CLUS_2                            11                             176
  CLUS_3                             3                              33
  CLUS_4                            12                              64
  CLUS_5                             7                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P12.31) MUTATED       31     15      2     11
  DEL PEAK 26(10P12.31) WILD-TYPE     93    106     40     95
D62V2, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            31                              93
  CLUS_2                            15                             106
  CLUS_3                             2                              40
  CLUS_4                            11                              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P12.31) MUTATED       11     16      8
  DEL PEAK 26(10P12.31) WILD-TYPE     71     74     83
D62V3, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            11                              71
  CLUS_2                            16                              74
  CLUS_3                             8                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P12.31) MUTATED        6     13      4     12
  DEL PEAK 26(10P12.31) WILD-TYPE     28     70     51     79
D62V4, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                             6                              28
  CLUS_2                            13                              70
  CLUS_3                             4                              51
  CLUS_4                            12                              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P12.31) MUTATED        6      4      8      4     12
  DEL PEAK 26(10P12.31) WILD-TYPE     59     58     38     33     50
D62V5, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                             6                              59
  CLUS_2                             4                              58
  CLUS_3                             8                              38
  CLUS_4                             4                              33
  CLUS_5                            12                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10P12.31) MUTATED        5      1      4     10      5      8
  DEL PEAK 26(10P12.31) WILD-TYPE     33     20     45     52     36     32
                                 vv
clus                              CLUS_7
  DEL PEAK 26(10P12.31) MUTATED        1
  DEL PEAK 26(10P12.31) WILD-TYPE     20
D62V6, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                             5                              33
  CLUS_2                             1                              20
  CLUS_3                             4                              45
  CLUS_4                            10                              52
  CLUS_5                             5                              36
  CLUS_6                             8                              32
  CLUS_7                             1                              20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P12.31) MUTATED       23     10     34
  DEL PEAK 26(10P12.31) WILD-TYPE    163    123     87
D62V7, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            23                             163
  CLUS_2                            10                             123
  CLUS_3                            34                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P12.31) MUTATED       11     28      3     25
  DEL PEAK 26(10P12.31) WILD-TYPE     68    147     76     82
D62V8, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            11                              68
  CLUS_2                            28                             147
  CLUS_3                             3                              76
  CLUS_4                            25                              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10P12.31) MUTATED       15      8      6     10      6      4
  DEL PEAK 26(10P12.31) WILD-TYPE     61     50     54     48     30     54
D62V9, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            15                              61
  CLUS_2                             8                              50
  CLUS_3                             6                              54
  CLUS_4                            10                              48
  CLUS_5                             6                              30
  CLUS_6                             4                              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P12.31) MUTATED       30      6     13
  DEL PEAK 26(10P12.31) WILD-TYPE    171     67     59
D62V10, multiclass
        clus
vv       DEL PEAK 26(10P12.31) MUTATED DEL PEAK 26(10P12.31) WILD-TYPE
  CLUS_1                            30                             171
  CLUS_2                             6                              67
  CLUS_3                            13                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 27(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED       46      8     11      8      6
  DEL PEAK 27(10Q22.3) WILD-TYPE     77    179     25     68     13
D63V1, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           46                             77
  CLUS_2                            8                            179
  CLUS_3                           11                             25
  CLUS_4                            8                             68
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q22.3) MUTATED       38     15      3     14
  DEL PEAK 27(10Q22.3) WILD-TYPE     86    106     39     92
D63V2, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           38                             86
  CLUS_2                           15                            106
  CLUS_3                            3                             39
  CLUS_4                           14                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q22.3) MUTATED       12     13     16
  DEL PEAK 27(10Q22.3) WILD-TYPE     70     77     75
D63V3, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           12                             70
  CLUS_2                           13                             77
  CLUS_3                           16                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q22.3) MUTATED        5     20      6     10
  DEL PEAK 27(10Q22.3) WILD-TYPE     29     63     49     81
D63V4, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                           20                             63
  CLUS_3                            6                             49
  CLUS_4                           10                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED        8      2      4      8     19
  DEL PEAK 27(10Q22.3) WILD-TYPE     57     60     42     29     43
D63V5, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                            8                             57
  CLUS_2                            2                             60
  CLUS_3                            4                             42
  CLUS_4                            8                             29
  CLUS_5                           19                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10Q22.3) MUTATED        2      2      3      8     14     11
  DEL PEAK 27(10Q22.3) WILD-TYPE     36     19     46     54     27     29
                                vv
clus                             CLUS_7
  DEL PEAK 27(10Q22.3) MUTATED        1
  DEL PEAK 27(10Q22.3) WILD-TYPE     20
D63V6, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                            2                             36
  CLUS_2                            2                             19
  CLUS_3                            3                             46
  CLUS_4                            8                             54
  CLUS_5                           14                             27
  CLUS_6                           11                             29
  CLUS_7                            1                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q22.3) MUTATED       34     10     35
  DEL PEAK 27(10Q22.3) WILD-TYPE    152    123     86
D63V7, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           34                            152
  CLUS_2                           10                            123
  CLUS_3                           35                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q22.3) MUTATED       18     21      6     34
  DEL PEAK 27(10Q22.3) WILD-TYPE     61    154     73     73
D63V8, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           18                             61
  CLUS_2                           21                            154
  CLUS_3                            6                             73
  CLUS_4                           34                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10Q22.3) MUTATED       23      7      8      7      6      6
  DEL PEAK 27(10Q22.3) WILD-TYPE     53     51     52     51     30     52
D63V9, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           23                             53
  CLUS_2                            7                             51
  CLUS_3                            8                             52
  CLUS_4                            7                             51
  CLUS_5                            6                             30
  CLUS_6                            6                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q22.3) MUTATED       35      6     16
  DEL PEAK 27(10Q22.3) WILD-TYPE    166     67     56
D63V10, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           35                            166
  CLUS_2                            6                             67
  CLUS_3                           16                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 28(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED       66     13     11     18      8
  DEL PEAK 28(10Q23.31) WILD-TYPE     57    174     25     58     11
D64V1, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            66                              57
  CLUS_2                            13                             174
  CLUS_3                            11                              25
  CLUS_4                            18                              58
  CLUS_5                             8                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       57     24      4     17
  DEL PEAK 28(10Q23.31) WILD-TYPE     67     97     38     89
D64V2, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            57                              67
  CLUS_2                            24                              97
  CLUS_3                             4                              38
  CLUS_4                            17                              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       14     19     29
  DEL PEAK 28(10Q23.31) WILD-TYPE     68     71     62
D64V3, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            14                              68
  CLUS_2                            19                              71
  CLUS_3                            29                              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED        7     34      8     13
  DEL PEAK 28(10Q23.31) WILD-TYPE     27     49     47     78
D64V4, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                             7                              27
  CLUS_2                            34                              49
  CLUS_3                             8                              47
  CLUS_4                            13                              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED        8      4      9     12     28
  DEL PEAK 28(10Q23.31) WILD-TYPE     57     58     37     25     34
D64V5, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                             8                              57
  CLUS_2                             4                              58
  CLUS_3                             9                              37
  CLUS_4                            12                              25
  CLUS_5                            28                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10Q23.31) MUTATED        2      3      4     16     18     17
  DEL PEAK 28(10Q23.31) WILD-TYPE     36     18     45     46     23     23
                                 vv
clus                              CLUS_7
  DEL PEAK 28(10Q23.31) MUTATED        1
  DEL PEAK 28(10Q23.31) WILD-TYPE     20
D64V6, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                             2                              36
  CLUS_2                             3                              18
  CLUS_3                             4                              45
  CLUS_4                            16                              46
  CLUS_5                            18                              23
  CLUS_6                            17                              23
  CLUS_7                             1                              20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       51     17     48
  DEL PEAK 28(10Q23.31) WILD-TYPE    135    116     73
D64V7, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            51                             135
  CLUS_2                            17                             116
  CLUS_3                            48                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       21     39      9     47
  DEL PEAK 28(10Q23.31) WILD-TYPE     58    136     70     60
D64V8, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            21                              58
  CLUS_2                            39                             136
  CLUS_3                             9                              70
  CLUS_4                            47                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10Q23.31) MUTATED       33     11     12     14     11      8
  DEL PEAK 28(10Q23.31) WILD-TYPE     43     47     48     44     25     50
D64V9, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            33                              43
  CLUS_2                            11                              47
  CLUS_3                            12                              48
  CLUS_4                            14                              44
  CLUS_5                            11                              25
  CLUS_6                             8                              50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       56     11     22
  DEL PEAK 28(10Q23.31) WILD-TYPE    145     62     50
D64V10, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            56                             145
  CLUS_2                            11                              62
  CLUS_3                            22                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 29(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED       51     10      8     27      1
  DEL PEAK 29(11P15.5) WILD-TYPE     72    177     28     49     18
D65V1, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           51                             72
  CLUS_2                           10                            177
  CLUS_3                            8                             28
  CLUS_4                           27                             49
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       46     22      2     13
  DEL PEAK 29(11P15.5) WILD-TYPE     78     99     40     93
D65V2, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           46                             78
  CLUS_2                           22                             99
  CLUS_3                            2                             40
  CLUS_4                           13                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED        7     15     33
  DEL PEAK 29(11P15.5) WILD-TYPE     75     75     58
D65V3, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                            7                             75
  CLUS_2                           15                             75
  CLUS_3                           33                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED        2     27      8     18
  DEL PEAK 29(11P15.5) WILD-TYPE     32     56     47     73
D65V4, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                            2                             32
  CLUS_2                           27                             56
  CLUS_3                            8                             47
  CLUS_4                           18                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED        7      6      6      7     21
  DEL PEAK 29(11P15.5) WILD-TYPE     58     56     40     30     41
D65V5, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                            7                             58
  CLUS_2                            6                             56
  CLUS_3                            6                             40
  CLUS_4                            7                             30
  CLUS_5                           21                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11P15.5) MUTATED        7      2      6      9      7     15
  DEL PEAK 29(11P15.5) WILD-TYPE     31     19     43     53     34     25
                                vv
clus                             CLUS_7
  DEL PEAK 29(11P15.5) MUTATED        1
  DEL PEAK 29(11P15.5) WILD-TYPE     20
D65V6, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                            2                             19
  CLUS_3                            6                             43
  CLUS_4                            9                             53
  CLUS_5                            7                             34
  CLUS_6                           15                             25
  CLUS_7                            1                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       33     20     44
  DEL PEAK 29(11P15.5) WILD-TYPE    153    113     77
D65V7, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           33                            153
  CLUS_2                           20                            113
  CLUS_3                           44                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       10     40     11     36
  DEL PEAK 29(11P15.5) WILD-TYPE     69    135     68     71
D65V8, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                           40                            135
  CLUS_3                           11                             68
  CLUS_4                           36                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11P15.5) MUTATED       21     11     14     11      9      6
  DEL PEAK 29(11P15.5) WILD-TYPE     55     47     46     47     27     52
D65V9, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           21                             55
  CLUS_2                           11                             47
  CLUS_3                           14                             46
  CLUS_4                           11                             47
  CLUS_5                            9                             27
  CLUS_6                            6                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       43     12     17
  DEL PEAK 29(11P15.5) WILD-TYPE    158     61     55
D65V10, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           43                            158
  CLUS_2                           12                             61
  CLUS_3                           17                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 30(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED       42     18      7     28      4
  DEL PEAK 30(11Q23.2) WILD-TYPE     81    169     29     48     15
D66V1, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           42                             81
  CLUS_2                           18                            169
  CLUS_3                            7                             29
  CLUS_4                           28                             48
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.2) MUTATED       42     23      3     21
  DEL PEAK 30(11Q23.2) WILD-TYPE     82     98     39     85
D66V2, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           42                             82
  CLUS_2                           23                             98
  CLUS_3                            3                             39
  CLUS_4                           21                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.2) MUTATED       15     21     20
  DEL PEAK 30(11Q23.2) WILD-TYPE     67     69     71
D66V3, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           15                             67
  CLUS_2                           21                             69
  CLUS_3                           20                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.2) MUTATED        9     21      6     20
  DEL PEAK 30(11Q23.2) WILD-TYPE     25     62     49     71
D66V4, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                            9                             25
  CLUS_2                           21                             62
  CLUS_3                            6                             49
  CLUS_4                           20                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED        5      8     17      9     16
  DEL PEAK 30(11Q23.2) WILD-TYPE     60     54     29     28     46
D66V5, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                            5                             60
  CLUS_2                            8                             54
  CLUS_3                           17                             29
  CLUS_4                            9                             28
  CLUS_5                           16                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11Q23.2) MUTATED        4      1      7     24      7     12
  DEL PEAK 30(11Q23.2) WILD-TYPE     34     20     42     38     34     28
                                vv
clus                             CLUS_7
  DEL PEAK 30(11Q23.2) MUTATED        0
  DEL PEAK 30(11Q23.2) WILD-TYPE     21
D66V6, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                            4                             34
  CLUS_2                            1                             20
  CLUS_3                            7                             42
  CLUS_4                           24                             38
  CLUS_5                            7                             34
  CLUS_6                           12                             28
  CLUS_7                            0                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.2) MUTATED       40     25     34
  DEL PEAK 30(11Q23.2) WILD-TYPE    146    108     87
D66V7, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           40                            146
  CLUS_2                           25                            108
  CLUS_3                           34                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.2) MUTATED       13     43     12     31
  DEL PEAK 30(11Q23.2) WILD-TYPE     66    132     67     76
D66V8, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           13                             66
  CLUS_2                           43                            132
  CLUS_3                           12                             67
  CLUS_4                           31                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11Q23.2) MUTATED       25     10     14     16      3      9
  DEL PEAK 30(11Q23.2) WILD-TYPE     51     48     46     42     33     49
D66V9, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           25                             51
  CLUS_2                           10                             48
  CLUS_3                           14                             46
  CLUS_4                           16                             42
  CLUS_5                            3                             33
  CLUS_6                            9                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.2) MUTATED       51     11     15
  DEL PEAK 30(11Q23.2) WILD-TYPE    150     62     57
D66V10, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           51                            150
  CLUS_2                           11                             62
  CLUS_3                           15                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 31(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED       46      6      6     12      7
  DEL PEAK 31(12P13.1) WILD-TYPE     77    181     30     64     12
D67V1, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           46                             77
  CLUS_2                            6                            181
  CLUS_3                            6                             30
  CLUS_4                           12                             64
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12P13.1) MUTATED       47     16      1      5
  DEL PEAK 31(12P13.1) WILD-TYPE     77    105     41    101
D67V2, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           47                             77
  CLUS_2                           16                            105
  CLUS_3                            1                             41
  CLUS_4                            5                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12P13.1) MUTATED       11     16     18
  DEL PEAK 31(12P13.1) WILD-TYPE     71     74     73
D67V3, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           11                             71
  CLUS_2                           16                             74
  CLUS_3                           18                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12P13.1) MUTATED        5     19      7     14
  DEL PEAK 31(12P13.1) WILD-TYPE     29     64     48     77
D67V4, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                           19                             64
  CLUS_3                            7                             48
  CLUS_4                           14                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED        4      5      5      4     23
  DEL PEAK 31(12P13.1) WILD-TYPE     61     57     41     33     39
D67V5, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                            4                             61
  CLUS_2                            5                             57
  CLUS_3                            5                             41
  CLUS_4                            4                             33
  CLUS_5                           23                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(12P13.1) MUTATED        7      0      3      8      6     17
  DEL PEAK 31(12P13.1) WILD-TYPE     31     21     46     54     35     23
                                vv
clus                             CLUS_7
  DEL PEAK 31(12P13.1) MUTATED        0
  DEL PEAK 31(12P13.1) WILD-TYPE     21
D67V6, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                            0                             21
  CLUS_3                            3                             46
  CLUS_4                            8                             54
  CLUS_5                            6                             35
  CLUS_6                           17                             23
  CLUS_7                            0                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12P13.1) MUTATED       29     13     35
  DEL PEAK 31(12P13.1) WILD-TYPE    157    120     86
D67V7, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           29                            157
  CLUS_2                           13                            120
  CLUS_3                           35                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12P13.1) MUTATED       11     24     10     32
  DEL PEAK 31(12P13.1) WILD-TYPE     68    151     69     75
D67V8, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                           24                            151
  CLUS_3                           10                             69
  CLUS_4                           32                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(12P13.1) MUTATED       22      9      9      9      8      8
  DEL PEAK 31(12P13.1) WILD-TYPE     54     49     51     49     28     50
D67V9, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           22                             54
  CLUS_2                            9                             49
  CLUS_3                            9                             51
  CLUS_4                            9                             49
  CLUS_5                            8                             28
  CLUS_6                            8                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12P13.1) MUTATED       45      7     13
  DEL PEAK 31(12P13.1) WILD-TYPE    156     66     59
D67V10, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           45                            156
  CLUS_2                            7                             66
  CLUS_3                           13                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 32(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED       34      5      5     12      3
  DEL PEAK 32(12Q12) WILD-TYPE     89    182     31     64     16
D68V1, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         34                           89
  CLUS_2                          5                          182
  CLUS_3                          5                           31
  CLUS_4                         12                           64
  CLUS_5                          3                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q12) MUTATED       32     12      0     10
  DEL PEAK 32(12Q12) WILD-TYPE     92    109     42     96
D68V2, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         32                           92
  CLUS_2                         12                          109
  CLUS_3                          0                           42
  CLUS_4                         10                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q12) MUTATED       10     11     13
  DEL PEAK 32(12Q12) WILD-TYPE     72     79     78
D68V3, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         10                           72
  CLUS_2                         11                           79
  CLUS_3                         13                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q12) MUTATED        5     10      6     13
  DEL PEAK 32(12Q12) WILD-TYPE     29     73     49     78
D68V4, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                          5                           29
  CLUS_2                         10                           73
  CLUS_3                          6                           49
  CLUS_4                         13                           78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED        4      4      6      7     11
  DEL PEAK 32(12Q12) WILD-TYPE     61     58     40     30     51
D68V5, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                          4                           61
  CLUS_2                          4                           58
  CLUS_3                          6                           40
  CLUS_4                          7                           30
  CLUS_5                         11                           51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 32(12Q12) MUTATED        6      0      2      8      7      7      2
  DEL PEAK 32(12Q12) WILD-TYPE     32     21     47     54     34     33     19
D68V6, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                          6                           32
  CLUS_2                          0                           21
  CLUS_3                          2                           47
  CLUS_4                          8                           54
  CLUS_5                          7                           34
  CLUS_6                          7                           33
  CLUS_7                          2                           19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q12) MUTATED       21     17     21
  DEL PEAK 32(12Q12) WILD-TYPE    165    116    100
D68V7, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         21                          165
  CLUS_2                         17                          116
  CLUS_3                         21                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q12) MUTATED        7     18     11     23
  DEL PEAK 32(12Q12) WILD-TYPE     72    157     68     84
D68V8, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                          7                           72
  CLUS_2                         18                          157
  CLUS_3                         11                           68
  CLUS_4                         23                           84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(12Q12) MUTATED       14      7      6      8      6      9
  DEL PEAK 32(12Q12) WILD-TYPE     62     51     54     50     30     49
D68V9, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         14                           62
  CLUS_2                          7                           51
  CLUS_3                          6                           54
  CLUS_4                          8                           50
  CLUS_5                          6                           30
  CLUS_6                          9                           49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q12) MUTATED       31      8     11
  DEL PEAK 32(12Q12) WILD-TYPE    170     65     61
D68V10, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         31                          170
  CLUS_2                          8                           65
  CLUS_3                         11                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 33(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED       25      9      3     23      3
  DEL PEAK 33(13Q12.11) WILD-TYPE     98    178     33     53     16
D69V1, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            25                              98
  CLUS_2                             9                             178
  CLUS_3                             3                              33
  CLUS_4                            23                              53
  CLUS_5                             3                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       25     18      2     11
  DEL PEAK 33(13Q12.11) WILD-TYPE     99    103     40     95
D69V2, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            25                              99
  CLUS_2                            18                             103
  CLUS_3                             2                              40
  CLUS_4                            11                              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       11     12     18
  DEL PEAK 33(13Q12.11) WILD-TYPE     71     78     73
D69V3, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            11                              71
  CLUS_2                            12                              78
  CLUS_3                            18                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED        3     12      7     19
  DEL PEAK 33(13Q12.11) WILD-TYPE     31     71     48     72
D69V4, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                             3                              31
  CLUS_2                            12                              71
  CLUS_3                             7                              48
  CLUS_4                            19                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED        6      7      7      3     16
  DEL PEAK 33(13Q12.11) WILD-TYPE     59     55     39     34     46
D69V5, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                             6                              59
  CLUS_2                             7                              55
  CLUS_3                             7                              39
  CLUS_4                             3                              34
  CLUS_5                            16                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q12.11) MUTATED       10      0      4      8      6     10
  DEL PEAK 33(13Q12.11) WILD-TYPE     28     21     45     54     35     30
                                 vv
clus                              CLUS_7
  DEL PEAK 33(13Q12.11) MUTATED        1
  DEL PEAK 33(13Q12.11) WILD-TYPE     20
D69V6, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            10                              28
  CLUS_2                             0                              21
  CLUS_3                             4                              45
  CLUS_4                             8                              54
  CLUS_5                             6                              35
  CLUS_6                            10                              30
  CLUS_7                             1                              20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       23     15     25
  DEL PEAK 33(13Q12.11) WILD-TYPE    163    118     96
D69V7, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            23                             163
  CLUS_2                            15                             118
  CLUS_3                            25                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED        7     28      9     19
  DEL PEAK 33(13Q12.11) WILD-TYPE     72    147     70     88
D69V8, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                             7                              72
  CLUS_2                            28                             147
  CLUS_3                             9                              70
  CLUS_4                            19                              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q12.11) MUTATED       12      9      7      8      5      9
  DEL PEAK 33(13Q12.11) WILD-TYPE     64     49     53     50     31     49
D69V9, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            12                              64
  CLUS_2                             9                              49
  CLUS_3                             7                              53
  CLUS_4                             8                              50
  CLUS_5                             5                              31
  CLUS_6                             9                              49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       33      7     10
  DEL PEAK 33(13Q12.11) WILD-TYPE    168     66     62
D69V10, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            33                             168
  CLUS_2                             7                              66
  CLUS_3                            10                              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 34(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED       61     19      6     43      7
  DEL PEAK 34(14Q23.3) WILD-TYPE     62    168     30     33     12
D70V1, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           61                             62
  CLUS_2                           19                            168
  CLUS_3                            6                             30
  CLUS_4                           43                             33
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED       70     29      6     18
  DEL PEAK 34(14Q23.3) WILD-TYPE     54     92     36     88
D70V2, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           70                             54
  CLUS_2                           29                             92
  CLUS_3                            6                             36
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       20     24     27
  DEL PEAK 34(14Q23.3) WILD-TYPE     62     66     64
D70V3, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           20                             62
  CLUS_2                           24                             66
  CLUS_3                           27                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED        8     27     11     25
  DEL PEAK 34(14Q23.3) WILD-TYPE     26     56     44     66
D70V4, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                            8                             26
  CLUS_2                           27                             56
  CLUS_3                           11                             44
  CLUS_4                           25                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED       11     14     13      6     33
  DEL PEAK 34(14Q23.3) WILD-TYPE     54     48     33     31     29
D70V5, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           11                             54
  CLUS_2                           14                             48
  CLUS_3                           13                             33
  CLUS_4                            6                             31
  CLUS_5                           33                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q23.3) MUTATED        9      5     10     15     10     25
  DEL PEAK 34(14Q23.3) WILD-TYPE     29     16     39     47     31     15
                                vv
clus                             CLUS_7
  DEL PEAK 34(14Q23.3) MUTATED        3
  DEL PEAK 34(14Q23.3) WILD-TYPE     18
D70V6, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                            9                             29
  CLUS_2                            5                             16
  CLUS_3                           10                             39
  CLUS_4                           15                             47
  CLUS_5                           10                             31
  CLUS_6                           25                             15
  CLUS_7                            3                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       48     27     61
  DEL PEAK 34(14Q23.3) WILD-TYPE    138    106     60
D70V7, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           48                            138
  CLUS_2                           27                            106
  CLUS_3                           61                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED       16     47     16     57
  DEL PEAK 34(14Q23.3) WILD-TYPE     63    128     63     50
D70V8, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           16                             63
  CLUS_2                           47                            128
  CLUS_3                           16                             63
  CLUS_4                           57                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q23.3) MUTATED       34     18     13     16     12     13
  DEL PEAK 34(14Q23.3) WILD-TYPE     42     40     47     42     24     45
D70V9, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           34                             42
  CLUS_2                           18                             40
  CLUS_3                           13                             47
  CLUS_4                           16                             42
  CLUS_5                           12                             24
  CLUS_6                           13                             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       76     14     16
  DEL PEAK 34(14Q23.3) WILD-TYPE    125     59     56
D70V10, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           76                            125
  CLUS_2                           14                             59
  CLUS_3                           16                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 35(14Q32.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED       55     20      4     48      6
  DEL PEAK 35(14Q32.32) WILD-TYPE     68    167     32     28     13
D71V1, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            55                              68
  CLUS_2                            20                             167
  CLUS_3                             4                              32
  CLUS_4                            48                              28
  CLUS_5                             6                              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED       62     28      8     21
  DEL PEAK 35(14Q32.32) WILD-TYPE     62     93     34     85
D71V2, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            62                              62
  CLUS_2                            28                              93
  CLUS_3                             8                              34
  CLUS_4                            21                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       23     26     30
  DEL PEAK 35(14Q32.32) WILD-TYPE     59     64     61
D71V3, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            23                              59
  CLUS_2                            26                              64
  CLUS_3                            30                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED        9     28     13     29
  DEL PEAK 35(14Q32.32) WILD-TYPE     25     55     42     62
D71V4, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                             9                              25
  CLUS_2                            28                              55
  CLUS_3                            13                              42
  CLUS_4                            29                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED       15     15     12      6     31
  DEL PEAK 35(14Q32.32) WILD-TYPE     50     47     34     31     31
D71V5, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            15                              50
  CLUS_2                            15                              47
  CLUS_3                            12                              34
  CLUS_4                             6                              31
  CLUS_5                            31                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q32.32) MUTATED       14      5     11     14      7     24
  DEL PEAK 35(14Q32.32) WILD-TYPE     24     16     38     48     34     16
                                 vv
clus                              CLUS_7
  DEL PEAK 35(14Q32.32) MUTATED        4
  DEL PEAK 35(14Q32.32) WILD-TYPE     17
D71V6, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            14                              24
  CLUS_2                             5                              16
  CLUS_3                            11                              38
  CLUS_4                            14                              48
  CLUS_5                             7                              34
  CLUS_6                            24                              16
  CLUS_7                             4                              17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       49     29     55
  DEL PEAK 35(14Q32.32) WILD-TYPE    137    104     66
D71V7, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            49                             137
  CLUS_2                            29                             104
  CLUS_3                            55                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED       18     51     18     46
  DEL PEAK 35(14Q32.32) WILD-TYPE     61    124     61     61
D71V8, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            18                              61
  CLUS_2                            51                             124
  CLUS_3                            18                              61
  CLUS_4                            46                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q32.32) MUTATED       31     16     14     15     12     15
  DEL PEAK 35(14Q32.32) WILD-TYPE     45     42     46     43     24     43
D71V9, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            31                              45
  CLUS_2                            16                              42
  CLUS_3                            14                              46
  CLUS_4                            15                              43
  CLUS_5                            12                              24
  CLUS_6                            15                              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       70     17     16
  DEL PEAK 35(14Q32.32) WILD-TYPE    131     56     56
D71V10, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            70                             131
  CLUS_2                            17                              56
  CLUS_3                            16                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 36(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED       61     16     10     27      6
  DEL PEAK 36(15Q11.2) WILD-TYPE     62    171     26     49     13
D72V1, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           61                             62
  CLUS_2                           16                            171
  CLUS_3                           10                             26
  CLUS_4                           27                             49
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       56     30      4     20
  DEL PEAK 36(15Q11.2) WILD-TYPE     68     91     38     86
D72V2, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           56                             68
  CLUS_2                           30                             91
  CLUS_3                            4                             38
  CLUS_4                           20                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       21     11     31
  DEL PEAK 36(15Q11.2) WILD-TYPE     61     79     60
D72V3, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           21                             61
  CLUS_2                           11                             79
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED        7     26     13     17
  DEL PEAK 36(15Q11.2) WILD-TYPE     27     57     42     74
D72V4, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                            7                             27
  CLUS_2                           26                             57
  CLUS_3                           13                             42
  CLUS_4                           17                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED        9      3     15      8     31
  DEL PEAK 36(15Q11.2) WILD-TYPE     56     59     31     29     31
D72V5, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                            9                             56
  CLUS_2                            3                             59
  CLUS_3                           15                             31
  CLUS_4                            8                             29
  CLUS_5                           31                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q11.2) MUTATED        8      3      2     19     16     17
  DEL PEAK 36(15Q11.2) WILD-TYPE     30     18     47     43     25     23
                                vv
clus                             CLUS_7
  DEL PEAK 36(15Q11.2) MUTATED        1
  DEL PEAK 36(15Q11.2) WILD-TYPE     20
D72V6, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                            8                             30
  CLUS_2                            3                             18
  CLUS_3                            2                             47
  CLUS_4                           19                             43
  CLUS_5                           16                             25
  CLUS_6                           17                             23
  CLUS_7                            1                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       49     23     48
  DEL PEAK 36(15Q11.2) WILD-TYPE    137    110     73
D72V7, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           49                            137
  CLUS_2                           23                            110
  CLUS_3                           48                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       18     44     11     47
  DEL PEAK 36(15Q11.2) WILD-TYPE     61    131     68     60
D72V8, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           18                             61
  CLUS_2                           44                            131
  CLUS_3                           11                             68
  CLUS_4                           47                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q11.2) MUTATED       28     20     16     16      9      7
  DEL PEAK 36(15Q11.2) WILD-TYPE     48     38     44     42     27     51
D72V9, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           28                             48
  CLUS_2                           20                             38
  CLUS_3                           16                             44
  CLUS_4                           16                             42
  CLUS_5                            9                             27
  CLUS_6                            7                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       69      8     19
  DEL PEAK 36(15Q11.2) WILD-TYPE    132     65     53
D72V10, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           69                            132
  CLUS_2                            8                             65
  CLUS_3                           19                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 37(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       63     15      9     29      6
  DEL PEAK 37(15Q15.1) WILD-TYPE     60    172     27     47     13
D73V1, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           63                             60
  CLUS_2                           15                            172
  CLUS_3                            9                             27
  CLUS_4                           29                             47
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       59     27      5     18
  DEL PEAK 37(15Q15.1) WILD-TYPE     65     94     37     88
D73V2, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           59                             65
  CLUS_2                           27                             94
  CLUS_3                            5                             37
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       22     12     31
  DEL PEAK 37(15Q15.1) WILD-TYPE     60     78     60
D73V3, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           22                             60
  CLUS_2                           12                             78
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED        8     26     14     17
  DEL PEAK 37(15Q15.1) WILD-TYPE     26     57     41     74
D73V4, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                            8                             26
  CLUS_2                           26                             57
  CLUS_3                           14                             41
  CLUS_4                           17                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       11      3     16      7     31
  DEL PEAK 37(15Q15.1) WILD-TYPE     54     59     30     30     31
D73V5, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           11                             54
  CLUS_2                            3                             59
  CLUS_3                           16                             30
  CLUS_4                            7                             30
  CLUS_5                           31                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(15Q15.1) MUTATED       10      4      1     19     14     19
  DEL PEAK 37(15Q15.1) WILD-TYPE     28     17     48     43     27     21
                                vv
clus                             CLUS_7
  DEL PEAK 37(15Q15.1) MUTATED        1
  DEL PEAK 37(15Q15.1) WILD-TYPE     20
D73V6, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           10                             28
  CLUS_2                            4                             17
  CLUS_3                            1                             48
  CLUS_4                           19                             43
  CLUS_5                           14                             27
  CLUS_6                           19                             21
  CLUS_7                            1                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       49     22     51
  DEL PEAK 37(15Q15.1) WILD-TYPE    137    111     70
D73V7, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           49                            137
  CLUS_2                           22                            111
  CLUS_3                           51                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       18     46     10     48
  DEL PEAK 37(15Q15.1) WILD-TYPE     61    129     69     59
D73V8, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           18                             61
  CLUS_2                           46                            129
  CLUS_3                           10                             69
  CLUS_4                           48                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(15Q15.1) MUTATED       31     16     16     16      9      6
  DEL PEAK 37(15Q15.1) WILD-TYPE     45     42     44     42     27     52
D73V9, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           31                             45
  CLUS_2                           16                             42
  CLUS_3                           16                             44
  CLUS_4                           16                             42
  CLUS_5                            9                             27
  CLUS_6                            6                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       67      7     20
  DEL PEAK 37(15Q15.1) WILD-TYPE    134     66     52
D73V10, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           67                            134
  CLUS_2                            7                             66
  CLUS_3                           20                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 38(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED       54     10      3     24      2
  DEL PEAK 38(16P13.3) WILD-TYPE     69    177     33     52     17
D74V1, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           54                             69
  CLUS_2                           10                            177
  CLUS_3                            3                             33
  CLUS_4                           24                             52
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       48     20      1     15
  DEL PEAK 38(16P13.3) WILD-TYPE     76    101     41     91
D74V2, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           48                             76
  CLUS_2                           20                            101
  CLUS_3                            1                             41
  CLUS_4                           15                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       14     20     18
  DEL PEAK 38(16P13.3) WILD-TYPE     68     70     73
D74V3, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           14                             68
  CLUS_2                           20                             70
  CLUS_3                           18                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED        8     18     10     16
  DEL PEAK 38(16P13.3) WILD-TYPE     26     65     45     75
D74V4, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                            8                             26
  CLUS_2                           18                             65
  CLUS_3                           10                             45
  CLUS_4                           16                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED        8      6      4      3     29
  DEL PEAK 38(16P13.3) WILD-TYPE     57     56     42     34     33
D74V5, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                            8                             57
  CLUS_2                            6                             56
  CLUS_3                            4                             42
  CLUS_4                            3                             34
  CLUS_5                           29                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16P13.3) MUTATED        8      0      4      7      6     22
  DEL PEAK 38(16P13.3) WILD-TYPE     30     21     45     55     35     18
                                vv
clus                             CLUS_7
  DEL PEAK 38(16P13.3) MUTATED        3
  DEL PEAK 38(16P13.3) WILD-TYPE     18
D74V6, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                            8                             30
  CLUS_2                            0                             21
  CLUS_3                            4                             45
  CLUS_4                            7                             55
  CLUS_5                            6                             35
  CLUS_6                           22                             18
  CLUS_7                            3                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       26     14     53
  DEL PEAK 38(16P13.3) WILD-TYPE    160    119     68
D74V7, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           26                            160
  CLUS_2                           14                            119
  CLUS_3                           53                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED        7     30      9     47
  DEL PEAK 38(16P13.3) WILD-TYPE     72    145     70     60
D74V8, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                            7                             72
  CLUS_2                           30                            145
  CLUS_3                            9                             70
  CLUS_4                           47                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16P13.3) MUTATED       34     10      5      7     13      5
  DEL PEAK 38(16P13.3) WILD-TYPE     42     48     55     51     23     53
D74V9, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           34                             42
  CLUS_2                           10                             48
  CLUS_3                            5                             55
  CLUS_4                            7                             51
  CLUS_5                           13                             23
  CLUS_6                            5                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       47      9     18
  DEL PEAK 38(16P13.3) WILD-TYPE    154     64     54
D74V10, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           47                            154
  CLUS_2                            9                             64
  CLUS_3                           18                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 39(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       74     43     13     44      8
  DEL PEAK 39(16Q23.1) WILD-TYPE     49    144     23     32     11
D75V1, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           74                             49
  CLUS_2                           43                            144
  CLUS_3                           13                             23
  CLUS_4                           44                             32
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       66     53     13     29
  DEL PEAK 39(16Q23.1) WILD-TYPE     58     68     29     77
D75V2, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           66                             58
  CLUS_2                           53                             68
  CLUS_3                           13                             29
  CLUS_4                           29                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       31     33     41
  DEL PEAK 39(16Q23.1) WILD-TYPE     51     57     50
D75V3, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           31                             51
  CLUS_2                           33                             57
  CLUS_3                           41                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       11     39     25     30
  DEL PEAK 39(16Q23.1) WILD-TYPE     23     44     30     61
D75V4, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           39                             44
  CLUS_3                           25                             30
  CLUS_4                           30                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       25     16     16     11     37
  DEL PEAK 39(16Q23.1) WILD-TYPE     40     46     30     26     25
D75V5, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           25                             40
  CLUS_2                           16                             46
  CLUS_3                           16                             30
  CLUS_4                           11                             26
  CLUS_5                           37                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(16Q23.1) MUTATED       15      9     12     22     15     26
  DEL PEAK 39(16Q23.1) WILD-TYPE     23     12     37     40     26     14
                                vv
clus                             CLUS_7
  DEL PEAK 39(16Q23.1) MUTATED        6
  DEL PEAK 39(16Q23.1) WILD-TYPE     15
D75V6, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           15                             23
  CLUS_2                            9                             12
  CLUS_3                           12                             37
  CLUS_4                           22                             40
  CLUS_5                           15                             26
  CLUS_6                           26                             14
  CLUS_7                            6                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       74     40     68
  DEL PEAK 39(16Q23.1) WILD-TYPE    112     93     53
D75V7, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           74                            112
  CLUS_2                           40                             93
  CLUS_3                           68                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       31     71     22     58
  DEL PEAK 39(16Q23.1) WILD-TYPE     48    104     57     49
D75V8, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           31                             48
  CLUS_2                           71                            104
  CLUS_3                           22                             57
  CLUS_4                           58                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(16Q23.1) MUTATED       40     24     21     19     20     15
  DEL PEAK 39(16Q23.1) WILD-TYPE     36     34     39     39     16     43
D75V9, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           40                             36
  CLUS_2                           24                             34
  CLUS_3                           21                             39
  CLUS_4                           19                             39
  CLUS_5                           20                             16
  CLUS_6                           15                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       90     20     29
  DEL PEAK 39(16Q23.1) WILD-TYPE    111     53     43
D75V10, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           90                            111
  CLUS_2                           20                             53
  CLUS_3                           29                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 40(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P13.3) MUTATED       80     18     17     52      9
  DEL PEAK 40(17P13.3) WILD-TYPE     43    169     19     24     10
D76V1, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           80                             43
  CLUS_2                           18                            169
  CLUS_3                           17                             19
  CLUS_4                           52                             24
  CLUS_5                            9                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.3) MUTATED       83     44      4     29
  DEL PEAK 40(17P13.3) WILD-TYPE     41     77     38     77
D76V2, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           83                             41
  CLUS_2                           44                             77
  CLUS_3                            4                             38
  CLUS_4                           29                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.3) MUTATED       29     31     38
  DEL PEAK 40(17P13.3) WILD-TYPE     53     59     53
D76V3, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           29                             53
  CLUS_2                           31                             59
  CLUS_3                           38                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.3) MUTATED       12     41     13     32
  DEL PEAK 40(17P13.3) WILD-TYPE     22     42     42     59
D76V4, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           12                             22
  CLUS_2                           41                             42
  CLUS_3                           13                             42
  CLUS_4                           32                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P13.3) MUTATED       14     13     18     13     38
  DEL PEAK 40(17P13.3) WILD-TYPE     51     49     28     24     24
D76V5, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           14                             51
  CLUS_2                           13                             49
  CLUS_3                           18                             28
  CLUS_4                           13                             24
  CLUS_5                           38                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P13.3) MUTATED       15      2     10     23     17     27
  DEL PEAK 40(17P13.3) WILD-TYPE     23     19     39     39     24     13
                                vv
clus                             CLUS_7
  DEL PEAK 40(17P13.3) MUTATED        2
  DEL PEAK 40(17P13.3) WILD-TYPE     19
D76V6, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           15                             23
  CLUS_2                            2                             19
  CLUS_3                           10                             39
  CLUS_4                           23                             39
  CLUS_5                           17                             24
  CLUS_6                           27                             13
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.3) MUTATED       68     36     71
  DEL PEAK 40(17P13.3) WILD-TYPE    118     97     50
D76V7, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           68                            118
  CLUS_2                           36                             97
  CLUS_3                           71                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.3) MUTATED       26     68     20     61
  DEL PEAK 40(17P13.3) WILD-TYPE     53    107     59     46
D76V8, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           26                             53
  CLUS_2                           68                            107
  CLUS_3                           20                             59
  CLUS_4                           61                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P13.3) MUTATED       40     27     21     22     14     16
  DEL PEAK 40(17P13.3) WILD-TYPE     36     31     39     36     22     42
D76V9, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           40                             36
  CLUS_2                           27                             31
  CLUS_3                           21                             39
  CLUS_4                           22                             36
  CLUS_5                           14                             22
  CLUS_6                           16                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.3) MUTATED       96     19     25
  DEL PEAK 40(17P13.3) WILD-TYPE    105     54     47
D76V10, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           96                            105
  CLUS_2                           19                             54
  CLUS_3                           25                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 41(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17P12) MUTATED       88     17     17     52      7
  DEL PEAK 41(17P12) WILD-TYPE     35    170     19     24     12
D77V1, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         88                           35
  CLUS_2                         17                          170
  CLUS_3                         17                           19
  CLUS_4                         52                           24
  CLUS_5                          7                           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17P12) MUTATED       90     45      4     26
  DEL PEAK 41(17P12) WILD-TYPE     34     76     38     80
D77V2, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         90                           34
  CLUS_2                         45                           76
  CLUS_3                          4                           38
  CLUS_4                         26                           80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17P12) MUTATED       32     29     38
  DEL PEAK 41(17P12) WILD-TYPE     50     61     53
D77V3, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         32                           50
  CLUS_2                         29                           61
  CLUS_3                         38                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17P12) MUTATED       15     42     14     28
  DEL PEAK 41(17P12) WILD-TYPE     19     41     41     63
D77V4, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         15                           19
  CLUS_2                         42                           41
  CLUS_3                         14                           41
  CLUS_4                         28                           63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17P12) MUTATED       15     10     19     12     42
  DEL PEAK 41(17P12) WILD-TYPE     50     52     27     25     20
D77V5, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         15                           50
  CLUS_2                         10                           52
  CLUS_3                         19                           27
  CLUS_4                         12                           25
  CLUS_5                         42                           20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 41(17P12) MUTATED       14      2      7     25     17     30      3
  DEL PEAK 41(17P12) WILD-TYPE     24     19     42     37     24     10     18
D77V6, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         14                           24
  CLUS_2                          2                           19
  CLUS_3                          7                           42
  CLUS_4                         25                           37
  CLUS_5                         17                           24
  CLUS_6                         30                           10
  CLUS_7                          3                           18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17P12) MUTATED       72     31     77
  DEL PEAK 41(17P12) WILD-TYPE    114    102     44
D77V7, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         72                          114
  CLUS_2                         31                          102
  CLUS_3                         77                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17P12) MUTATED       28     67     17     68
  DEL PEAK 41(17P12) WILD-TYPE     51    108     62     39
D77V8, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         28                           51
  CLUS_2                         67                          108
  CLUS_3                         17                           62
  CLUS_4                         68                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17P12) MUTATED       42     26     23     24     14     14
  DEL PEAK 41(17P12) WILD-TYPE     34     32     37     34     22     44
D77V9, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         42                           34
  CLUS_2                         26                           32
  CLUS_3                         23                           37
  CLUS_4                         24                           34
  CLUS_5                         14                           22
  CLUS_6                         14                           44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17P12) MUTATED       97     15     31
  DEL PEAK 41(17P12) WILD-TYPE    104     58     41
D77V10, multiclass
        clus
vv       DEL PEAK 41(17P12) MUTATED DEL PEAK 41(17P12) WILD-TYPE
  CLUS_1                         97                          104
  CLUS_2                         15                           58
  CLUS_3                         31                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 42(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(17Q24.3) MUTATED       35     10      6     19      6
  DEL PEAK 42(17Q24.3) WILD-TYPE     88    177     30     57     13
D78V1, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           35                             88
  CLUS_2                           10                            177
  CLUS_3                            6                             30
  CLUS_4                           19                             57
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q24.3) MUTATED       32     20      0     12
  DEL PEAK 42(17Q24.3) WILD-TYPE     92    101     42     94
D78V2, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           32                             92
  CLUS_2                           20                            101
  CLUS_3                            0                             42
  CLUS_4                           12                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q24.3) MUTATED       10     12     20
  DEL PEAK 42(17Q24.3) WILD-TYPE     72     78     71
D78V3, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           10                             72
  CLUS_2                           12                             78
  CLUS_3                           20                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q24.3) MUTATED        4     19      7     12
  DEL PEAK 42(17Q24.3) WILD-TYPE     30     64     48     79
D78V4, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                            4                             30
  CLUS_2                           19                             64
  CLUS_3                            7                             48
  CLUS_4                           12                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(17Q24.3) MUTATED        7      5      6     10     16
  DEL PEAK 42(17Q24.3) WILD-TYPE     58     57     40     27     46
D78V5, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                            7                             58
  CLUS_2                            5                             57
  CLUS_3                            6                             40
  CLUS_4                           10                             27
  CLUS_5                           16                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(17Q24.3) MUTATED        6      0      4      7     12     12
  DEL PEAK 42(17Q24.3) WILD-TYPE     32     21     45     55     29     28
                                vv
clus                             CLUS_7
  DEL PEAK 42(17Q24.3) MUTATED        3
  DEL PEAK 42(17Q24.3) WILD-TYPE     18
D78V6, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                            6                             32
  CLUS_2                            0                             21
  CLUS_3                            4                             45
  CLUS_4                            7                             55
  CLUS_5                           12                             29
  CLUS_6                           12                             28
  CLUS_7                            3                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q24.3) MUTATED       27     16     32
  DEL PEAK 42(17Q24.3) WILD-TYPE    159    117     89
D78V7, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           27                            159
  CLUS_2                           16                            117
  CLUS_3                           32                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q24.3) MUTATED       13     23     11     28
  DEL PEAK 42(17Q24.3) WILD-TYPE     66    152     68     79
D78V8, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           13                             66
  CLUS_2                           23                            152
  CLUS_3                           11                             68
  CLUS_4                           28                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(17Q24.3) MUTATED       16     10      6      6      9      8
  DEL PEAK 42(17Q24.3) WILD-TYPE     60     48     54     52     27     50
D78V9, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           16                             60
  CLUS_2                           10                             48
  CLUS_3                            6                             54
  CLUS_4                            6                             52
  CLUS_5                            9                             27
  CLUS_6                            8                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q24.3) MUTATED       29     12     14
  DEL PEAK 42(17Q24.3) WILD-TYPE    172     61     58
D78V10, multiclass
        clus
vv       DEL PEAK 42(17Q24.3) MUTATED DEL PEAK 42(17Q24.3) WILD-TYPE
  CLUS_1                           29                            172
  CLUS_2                           12                             61
  CLUS_3                           14                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 43(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q12.2) MUTATED       82     29     20     46      4
  DEL PEAK 43(18Q12.2) WILD-TYPE     41    158     16     30     15
D79V1, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           82                             41
  CLUS_2                           29                            158
  CLUS_3                           20                             16
  CLUS_4                           46                             30
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q12.2) MUTATED       71     39     20     29
  DEL PEAK 43(18Q12.2) WILD-TYPE     53     82     22     77
D79V2, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           71                             53
  CLUS_2                           39                             82
  CLUS_3                           20                             22
  CLUS_4                           29                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q12.2) MUTATED       31     34     37
  DEL PEAK 43(18Q12.2) WILD-TYPE     51     56     54
D79V3, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           31                             51
  CLUS_2                           34                             56
  CLUS_3                           37                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q12.2) MUTATED       12     36     19     35
  DEL PEAK 43(18Q12.2) WILD-TYPE     22     47     36     56
D79V4, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           12                             22
  CLUS_2                           36                             47
  CLUS_3                           19                             36
  CLUS_4                           35                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q12.2) MUTATED       21     18     22      9     34
  DEL PEAK 43(18Q12.2) WILD-TYPE     44     44     24     28     28
D79V5, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           21                             44
  CLUS_2                           18                             44
  CLUS_3                           22                             24
  CLUS_4                            9                             28
  CLUS_5                           34                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q12.2) MUTATED       15     12     14     24     17     19
  DEL PEAK 43(18Q12.2) WILD-TYPE     23      9     35     38     24     21
                                vv
clus                             CLUS_7
  DEL PEAK 43(18Q12.2) MUTATED        3
  DEL PEAK 43(18Q12.2) WILD-TYPE     18
D79V6, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           15                             23
  CLUS_2                           12                              9
  CLUS_3                           14                             35
  CLUS_4                           24                             38
  CLUS_5                           17                             24
  CLUS_6                           19                             21
  CLUS_7                            3                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q12.2) MUTATED       68     43     70
  DEL PEAK 43(18Q12.2) WILD-TYPE    118     90     51
D79V7, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           68                            118
  CLUS_2                           43                             90
  CLUS_3                           70                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q12.2) MUTATED       25     69     25     62
  DEL PEAK 43(18Q12.2) WILD-TYPE     54    106     54     45
D79V8, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           25                             54
  CLUS_2                           69                            106
  CLUS_3                           25                             54
  CLUS_4                           62                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q12.2) MUTATED       44     17     19     27     16     15
  DEL PEAK 43(18Q12.2) WILD-TYPE     32     41     41     31     20     43
D79V9, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           44                             32
  CLUS_2                           17                             41
  CLUS_3                           19                             41
  CLUS_4                           27                             31
  CLUS_5                           16                             20
  CLUS_6                           15                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q12.2) MUTATED       93     19     26
  DEL PEAK 43(18Q12.2) WILD-TYPE    108     54     46
D79V10, multiclass
        clus
vv       DEL PEAK 43(18Q12.2) MUTATED DEL PEAK 43(18Q12.2) WILD-TYPE
  CLUS_1                           93                            108
  CLUS_2                           19                             54
  CLUS_3                           26                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 44(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(18Q21.2) MUTATED       89     35     25     51      4
  DEL PEAK 44(18Q21.2) WILD-TYPE     34    152     11     25     15
D80V1, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           89                             34
  CLUS_2                           35                            152
  CLUS_3                           25                             11
  CLUS_4                           51                             25
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q21.2) MUTATED       79     49     21     33
  DEL PEAK 44(18Q21.2) WILD-TYPE     45     72     21     73
D80V2, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           79                             45
  CLUS_2                           49                             72
  CLUS_3                           21                             21
  CLUS_4                           33                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q21.2) MUTATED       33     42     42
  DEL PEAK 44(18Q21.2) WILD-TYPE     49     48     49
D80V3, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           33                             49
  CLUS_2                           42                             48
  CLUS_3                           42                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q21.2) MUTATED       13     42     21     41
  DEL PEAK 44(18Q21.2) WILD-TYPE     21     41     34     50
D80V4, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           13                             21
  CLUS_2                           42                             41
  CLUS_3                           21                             34
  CLUS_4                           41                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(18Q21.2) MUTATED       26     19     23     11     41
  DEL PEAK 44(18Q21.2) WILD-TYPE     39     43     23     26     21
D80V5, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           26                             39
  CLUS_2                           19                             43
  CLUS_3                           23                             23
  CLUS_4                           11                             26
  CLUS_5                           41                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(18Q21.2) MUTATED       17     13     15     28     20     24
  DEL PEAK 44(18Q21.2) WILD-TYPE     21      8     34     34     21     16
                                vv
clus                             CLUS_7
  DEL PEAK 44(18Q21.2) MUTATED        3
  DEL PEAK 44(18Q21.2) WILD-TYPE     18
D80V6, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           17                             21
  CLUS_2                           13                              8
  CLUS_3                           15                             34
  CLUS_4                           28                             34
  CLUS_5                           20                             21
  CLUS_6                           24                             16
  CLUS_7                            3                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q21.2) MUTATED       80     48     76
  DEL PEAK 44(18Q21.2) WILD-TYPE    106     85     45
D80V7, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           80                            106
  CLUS_2                           48                             85
  CLUS_3                           76                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q21.2) MUTATED       33     77     28     66
  DEL PEAK 44(18Q21.2) WILD-TYPE     46     98     51     41
D80V8, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           33                             46
  CLUS_2                           77                             98
  CLUS_3                           28                             51
  CLUS_4                           66                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(18Q21.2) MUTATED       48     19     23     31     16     19
  DEL PEAK 44(18Q21.2) WILD-TYPE     28     39     37     27     20     39
D80V9, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                           48                             28
  CLUS_2                           19                             39
  CLUS_3                           23                             37
  CLUS_4                           31                             27
  CLUS_5                           16                             20
  CLUS_6                           19                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q21.2) MUTATED      102     22     32
  DEL PEAK 44(18Q21.2) WILD-TYPE     99     51     40
D80V10, multiclass
        clus
vv       DEL PEAK 44(18Q21.2) MUTATED DEL PEAK 44(18Q21.2) WILD-TYPE
  CLUS_1                          102                             99
  CLUS_2                           22                             51
  CLUS_3                           32                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 45(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P13.3) MUTATED       92      9     12     42      7
  DEL PEAK 45(19P13.3) WILD-TYPE     31    178     24     34     12
D81V1, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           92                             31
  CLUS_2                            9                            178
  CLUS_3                           12                             24
  CLUS_4                           42                             34
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED       92     30      5     19
  DEL PEAK 45(19P13.3) WILD-TYPE     32     91     37     87
D81V2, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           92                             32
  CLUS_2                           30                             91
  CLUS_3                            5                             37
  CLUS_4                           19                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       24     21     42
  DEL PEAK 45(19P13.3) WILD-TYPE     58     69     49
D81V3, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           24                             58
  CLUS_2                           21                             69
  CLUS_3                           42                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED       11     40     13     23
  DEL PEAK 45(19P13.3) WILD-TYPE     23     43     42     68
D81V4, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           40                             43
  CLUS_3                           13                             42
  CLUS_4                           23                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P13.3) MUTATED       13      4     13      8     47
  DEL PEAK 45(19P13.3) WILD-TYPE     52     58     33     29     15
D81V5, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           13                             52
  CLUS_2                            4                             58
  CLUS_3                           13                             33
  CLUS_4                            8                             29
  CLUS_5                           47                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P13.3) MUTATED       14      2      4     21     12     30
  DEL PEAK 45(19P13.3) WILD-TYPE     24     19     45     41     29     10
                                vv
clus                             CLUS_7
  DEL PEAK 45(19P13.3) MUTATED        2
  DEL PEAK 45(19P13.3) WILD-TYPE     19
D81V6, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           14                             24
  CLUS_2                            2                             19
  CLUS_3                            4                             45
  CLUS_4                           21                             41
  CLUS_5                           12                             29
  CLUS_6                           30                             10
  CLUS_7                            2                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       53     23     85
  DEL PEAK 45(19P13.3) WILD-TYPE    133    110     36
D81V7, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           53                            133
  CLUS_2                           23                            110
  CLUS_3                           85                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED       20     49      7     85
  DEL PEAK 45(19P13.3) WILD-TYPE     59    126     72     22
D81V8, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           20                             59
  CLUS_2                           49                            126
  CLUS_3                            7                             72
  CLUS_4                           85                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P13.3) MUTATED       50     17     17     20     18      7
  DEL PEAK 45(19P13.3) WILD-TYPE     26     41     43     38     18     51
D81V9, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           50                             26
  CLUS_2                           17                             41
  CLUS_3                           17                             43
  CLUS_4                           20                             38
  CLUS_5                           18                             18
  CLUS_6                            7                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       91     10     28
  DEL PEAK 45(19P13.3) WILD-TYPE    110     63     44
D81V10, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           91                            110
  CLUS_2                           10                             63
  CLUS_3                           28                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 46(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.11) MUTATED       41      5      6     16      7
  DEL PEAK 46(19Q13.11) WILD-TYPE     82    182     30     60     12
D82V1, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            41                              82
  CLUS_2                             5                             182
  CLUS_3                             6                              30
  CLUS_4                            16                              60
  CLUS_5                             7                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.11) MUTATED       47     16      1      4
  DEL PEAK 46(19Q13.11) WILD-TYPE     77    105     41    102
D82V2, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            47                              77
  CLUS_2                            16                             105
  CLUS_3                             1                              41
  CLUS_4                             4                             102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.11) MUTATED       10      7     18
  DEL PEAK 46(19Q13.11) WILD-TYPE     72     83     73
D82V3, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            10                              72
  CLUS_2                             7                              83
  CLUS_3                            18                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.11) MUTATED        4     14      7     10
  DEL PEAK 46(19Q13.11) WILD-TYPE     30     69     48     81
D82V4, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                             4                              30
  CLUS_2                            14                              69
  CLUS_3                             7                              48
  CLUS_4                            10                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.11) MUTATED        6      2      6      3     21
  DEL PEAK 46(19Q13.11) WILD-TYPE     59     60     40     34     41
D82V5, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                             6                              59
  CLUS_2                             2                              60
  CLUS_3                             6                              40
  CLUS_4                             3                              34
  CLUS_5                            21                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.11) MUTATED        2      1      2     11      7     14
  DEL PEAK 46(19Q13.11) WILD-TYPE     36     20     47     51     34     26
                                 vv
clus                              CLUS_7
  DEL PEAK 46(19Q13.11) MUTATED        1
  DEL PEAK 46(19Q13.11) WILD-TYPE     20
D82V6, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                             2                              36
  CLUS_2                             1                              20
  CLUS_3                             2                              47
  CLUS_4                            11                              51
  CLUS_5                             7                              34
  CLUS_6                            14                              26
  CLUS_7                             1                              20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.11) MUTATED       26      8     41
  DEL PEAK 46(19Q13.11) WILD-TYPE    160    125     80
D82V7, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            26                             160
  CLUS_2                             8                             125
  CLUS_3                            41                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.11) MUTATED       12     16      5     42
  DEL PEAK 46(19Q13.11) WILD-TYPE     67    159     74     65
D82V8, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            12                              67
  CLUS_2                            16                             159
  CLUS_3                             5                              74
  CLUS_4                            42                              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.11) MUTATED       24     11     10      6      6      4
  DEL PEAK 46(19Q13.11) WILD-TYPE     52     47     50     52     30     54
D82V9, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            24                              52
  CLUS_2                            11                              47
  CLUS_3                            10                              50
  CLUS_4                             6                              52
  CLUS_5                             6                              30
  CLUS_6                             4                              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.11) MUTATED       38      5     18
  DEL PEAK 46(19Q13.11) WILD-TYPE    163     68     54
D82V10, multiclass
        clus
vv       DEL PEAK 46(19Q13.11) MUTATED DEL PEAK 46(19Q13.11) WILD-TYPE
  CLUS_1                            38                             163
  CLUS_2                             5                              68
  CLUS_3                            18                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 47(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED       20      8      1     10      0
  DEL PEAK 47(20P12.1) WILD-TYPE    103    179     35     66     19
D83V1, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           20                            103
  CLUS_2                            8                            179
  CLUS_3                            1                             35
  CLUS_4                           10                             66
  CLUS_5                            0                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED       24      7      1      5
  DEL PEAK 47(20P12.1) WILD-TYPE    100    114     41    101
D83V2, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           24                            100
  CLUS_2                            7                            114
  CLUS_3                            1                             41
  CLUS_4                            5                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        5      7      9
  DEL PEAK 47(20P12.1) WILD-TYPE     77     83     82
D83V3, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            5                             77
  CLUS_2                            7                             83
  CLUS_3                            9                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        2      9      1      9
  DEL PEAK 47(20P12.1) WILD-TYPE     32     74     54     82
D83V4, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            2                             32
  CLUS_2                            9                             74
  CLUS_3                            1                             54
  CLUS_4                            9                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED        3      2      9      1      7
  DEL PEAK 47(20P12.1) WILD-TYPE     62     60     37     36     55
D83V5, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                            2                             60
  CLUS_3                            9                             37
  CLUS_4                            1                             36
  CLUS_5                            7                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED        5      0      1      9      3      4
  DEL PEAK 47(20P12.1) WILD-TYPE     33     21     48     53     38     36
                                vv
clus                             CLUS_7
  DEL PEAK 47(20P12.1) MUTATED        0
  DEL PEAK 47(20P12.1) WILD-TYPE     21
D83V6, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            5                             33
  CLUS_2                            0                             21
  CLUS_3                            1                             48
  CLUS_4                            9                             53
  CLUS_5                            3                             38
  CLUS_6                            4                             36
  CLUS_7                            0                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       11      7     21
  DEL PEAK 47(20P12.1) WILD-TYPE    175    126    100
D83V7, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           11                            175
  CLUS_2                            7                            126
  CLUS_3                           21                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        5     15      3     16
  DEL PEAK 47(20P12.1) WILD-TYPE     74    160     76     91
D83V8, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            5                             74
  CLUS_2                           15                            160
  CLUS_3                            3                             76
  CLUS_4                           16                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED       10      6      4      6      4      3
  DEL PEAK 47(20P12.1) WILD-TYPE     66     52     56     52     32     55
D83V9, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           10                             66
  CLUS_2                            6                             52
  CLUS_3                            4                             56
  CLUS_4                            6                             52
  CLUS_5                            4                             32
  CLUS_6                            3                             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       21      2     10
  DEL PEAK 47(20P12.1) WILD-TYPE    180     71     62
D83V10, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           21                            180
  CLUS_2                            2                             71
  CLUS_3                           10                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 48(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q11.2) MUTATED       75     35     16     46     11
  DEL PEAK 48(21Q11.2) WILD-TYPE     48    152     20     30      8
D84V1, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           75                             48
  CLUS_2                           35                            152
  CLUS_3                           16                             20
  CLUS_4                           46                             30
  CLUS_5                           11                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(21Q11.2) MUTATED       74     48      7     39
  DEL PEAK 48(21Q11.2) WILD-TYPE     50     73     35     67
D84V2, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           74                             50
  CLUS_2                           48                             73
  CLUS_3                            7                             35
  CLUS_4                           39                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(21Q11.2) MUTATED       24     37     35
  DEL PEAK 48(21Q11.2) WILD-TYPE     58     53     56
D84V3, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           24                             58
  CLUS_2                           37                             53
  CLUS_3                           35                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(21Q11.2) MUTATED       13     32     13     38
  DEL PEAK 48(21Q11.2) WILD-TYPE     21     51     42     53
D84V4, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           13                             21
  CLUS_2                           32                             51
  CLUS_3                           13                             42
  CLUS_4                           38                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q11.2) MUTATED       18     17     13     11     35
  DEL PEAK 48(21Q11.2) WILD-TYPE     47     45     33     26     27
D84V5, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           18                             47
  CLUS_2                           17                             45
  CLUS_3                           13                             33
  CLUS_4                           11                             26
  CLUS_5                           35                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(21Q11.2) MUTATED       18      2     14     18     16     22
  DEL PEAK 48(21Q11.2) WILD-TYPE     20     19     35     44     25     18
                                vv
clus                             CLUS_7
  DEL PEAK 48(21Q11.2) MUTATED        4
  DEL PEAK 48(21Q11.2) WILD-TYPE     17
D84V6, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           18                             20
  CLUS_2                            2                             19
  CLUS_3                           14                             35
  CLUS_4                           18                             44
  CLUS_5                           16                             25
  CLUS_6                           22                             18
  CLUS_7                            4                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(21Q11.2) MUTATED       68     43     72
  DEL PEAK 48(21Q11.2) WILD-TYPE    118     90     49
D84V7, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           68                            118
  CLUS_2                           43                             90
  CLUS_3                           72                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(21Q11.2) MUTATED       25     68     28     62
  DEL PEAK 48(21Q11.2) WILD-TYPE     54    107     51     45
D84V8, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           25                             54
  CLUS_2                           68                            107
  CLUS_3                           28                             51
  CLUS_4                           62                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(21Q11.2) MUTATED       42     26     17     24     22     17
  DEL PEAK 48(21Q11.2) WILD-TYPE     34     32     43     34     14     41
D84V9, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           42                             34
  CLUS_2                           26                             32
  CLUS_3                           17                             43
  CLUS_4                           24                             34
  CLUS_5                           22                             14
  CLUS_6                           17                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(21Q11.2) MUTATED       96     26     26
  DEL PEAK 48(21Q11.2) WILD-TYPE    105     47     46
D84V10, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           96                            105
  CLUS_2                           26                             47
  CLUS_3                           26                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 49(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(21Q22.3) MUTATED       73     39     17     53     11
  DEL PEAK 49(21Q22.3) WILD-TYPE     50    148     19     23      8
D85V1, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           73                             50
  CLUS_2                           39                            148
  CLUS_3                           17                             19
  CLUS_4                           53                             23
  CLUS_5                           11                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(21Q22.3) MUTATED       71     55      6     42
  DEL PEAK 49(21Q22.3) WILD-TYPE     53     66     36     64
D85V2, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           71                             53
  CLUS_2                           55                             66
  CLUS_3                            6                             36
  CLUS_4                           42                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(21Q22.3) MUTATED       25     37     39
  DEL PEAK 49(21Q22.3) WILD-TYPE     57     53     52
D85V3, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           25                             57
  CLUS_2                           37                             53
  CLUS_3                           39                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(21Q22.3) MUTATED       14     35     15     37
  DEL PEAK 49(21Q22.3) WILD-TYPE     20     48     40     54
D85V4, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           14                             20
  CLUS_2                           35                             48
  CLUS_3                           15                             40
  CLUS_4                           37                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(21Q22.3) MUTATED       19     17     17     11     35
  DEL PEAK 49(21Q22.3) WILD-TYPE     46     45     29     26     27
D85V5, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           19                             46
  CLUS_2                           17                             45
  CLUS_3                           17                             29
  CLUS_4                           11                             26
  CLUS_5                           35                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(21Q22.3) MUTATED       19      2     14     21     17     23
  DEL PEAK 49(21Q22.3) WILD-TYPE     19     19     35     41     24     17
                                vv
clus                             CLUS_7
  DEL PEAK 49(21Q22.3) MUTATED        3
  DEL PEAK 49(21Q22.3) WILD-TYPE     18
D85V6, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           19                             19
  CLUS_2                            2                             19
  CLUS_3                           14                             35
  CLUS_4                           21                             41
  CLUS_5                           17                             24
  CLUS_6                           23                             17
  CLUS_7                            3                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(21Q22.3) MUTATED       78     44     71
  DEL PEAK 49(21Q22.3) WILD-TYPE    108     89     50
D85V7, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           78                            108
  CLUS_2                           44                             89
  CLUS_3                           71                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(21Q22.3) MUTATED       29     76     26     62
  DEL PEAK 49(21Q22.3) WILD-TYPE     50     99     53     45
D85V8, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           29                             50
  CLUS_2                           76                             99
  CLUS_3                           26                             53
  CLUS_4                           62                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(21Q22.3) MUTATED       42     32     21     21     24     16
  DEL PEAK 49(21Q22.3) WILD-TYPE     34     26     39     37     12     42
D85V9, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                           42                             34
  CLUS_2                           32                             26
  CLUS_3                           21                             39
  CLUS_4                           21                             37
  CLUS_5                           24                             12
  CLUS_6                           16                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(21Q22.3) MUTATED      100     26     30
  DEL PEAK 49(21Q22.3) WILD-TYPE    101     47     42
D85V10, multiclass
        clus
vv       DEL PEAK 49(21Q22.3) MUTATED DEL PEAK 49(21Q22.3) WILD-TYPE
  CLUS_1                          100                            101
  CLUS_2                           26                             47
  CLUS_3                           30                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 50(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(22Q13.31) MUTATED       73     21     11     47      9
  DEL PEAK 50(22Q13.31) WILD-TYPE     50    166     25     29     10
D86V1, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            73                              50
  CLUS_2                            21                             166
  CLUS_3                            11                              25
  CLUS_4                            47                              29
  CLUS_5                             9                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.31) MUTATED       75     40      4     25
  DEL PEAK 50(22Q13.31) WILD-TYPE     49     81     38     81
D86V2, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            75                              49
  CLUS_2                            40                              81
  CLUS_3                             4                              38
  CLUS_4                            25                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.31) MUTATED       21     28     39
  DEL PEAK 50(22Q13.31) WILD-TYPE     61     62     52
D86V3, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            21                              61
  CLUS_2                            28                              62
  CLUS_3                            39                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.31) MUTATED        9     40     12     27
  DEL PEAK 50(22Q13.31) WILD-TYPE     25     43     43     64
D86V4, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                             9                              25
  CLUS_2                            40                              43
  CLUS_3                            12                              43
  CLUS_4                            27                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(22Q13.31) MUTATED       14     15     18     11     33
  DEL PEAK 50(22Q13.31) WILD-TYPE     51     47     28     26     29
D86V5, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            14                              51
  CLUS_2                            15                              47
  CLUS_3                            18                              28
  CLUS_4                            11                              26
  CLUS_5                            33                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(22Q13.31) MUTATED       15      3     10     24     15     21
  DEL PEAK 50(22Q13.31) WILD-TYPE     23     18     39     38     26     19
                                 vv
clus                              CLUS_7
  DEL PEAK 50(22Q13.31) MUTATED        3
  DEL PEAK 50(22Q13.31) WILD-TYPE     18
D86V6, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            15                              23
  CLUS_2                             3                              18
  CLUS_3                            10                              39
  CLUS_4                            24                              38
  CLUS_5                            15                              26
  CLUS_6                            21                              19
  CLUS_7                             3                              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.31) MUTATED       56     34     70
  DEL PEAK 50(22Q13.31) WILD-TYPE    130     99     51
D86V7, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            56                             130
  CLUS_2                            34                              99
  CLUS_3                            70                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.31) MUTATED       24     54     18     64
  DEL PEAK 50(22Q13.31) WILD-TYPE     55    121     61     43
D86V8, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            24                              55
  CLUS_2                            54                             121
  CLUS_3                            18                              61
  CLUS_4                            64                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(22Q13.31) MUTATED       41     22     22     12     19     13
  DEL PEAK 50(22Q13.31) WILD-TYPE     35     36     38     46     17     45
D86V9, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            41                              35
  CLUS_2                            22                              36
  CLUS_3                            22                              38
  CLUS_4                            12                              46
  CLUS_5                            19                              17
  CLUS_6                            13                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.31) MUTATED       85     17     27
  DEL PEAK 50(22Q13.31) WILD-TYPE    116     56     45
D86V10, multiclass
        clus
vv       DEL PEAK 50(22Q13.31) MUTATED DEL PEAK 50(22Q13.31) WILD-TYPE
  CLUS_1                            85                             116
  CLUS_2                            17                              56
  CLUS_3                            27                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 51(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP22.2) MUTATED       42     11      4     24      4
  DEL PEAK 51(XP22.2) WILD-TYPE     81    176     32     52     15
D87V1, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          42                            81
  CLUS_2                          11                           176
  CLUS_3                           4                            32
  CLUS_4                          24                            52
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP22.2) MUTATED       39     24      2     14
  DEL PEAK 51(XP22.2) WILD-TYPE     85     97     40     92
D87V2, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          39                            85
  CLUS_2                          24                            97
  CLUS_3                           2                            40
  CLUS_4                          14                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP22.2) MUTATED       14     16     22
  DEL PEAK 51(XP22.2) WILD-TYPE     68     74     69
D87V3, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          14                            68
  CLUS_2                          16                            74
  CLUS_3                          22                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP22.2) MUTATED        9     23      6     14
  DEL PEAK 51(XP22.2) WILD-TYPE     25     60     49     77
D87V4, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                           9                            25
  CLUS_2                          23                            60
  CLUS_3                           6                            49
  CLUS_4                          14                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP22.2) MUTATED        3      8      9     10     21
  DEL PEAK 51(XP22.2) WILD-TYPE     62     54     37     27     41
D87V5, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                           3                            62
  CLUS_2                           8                            54
  CLUS_3                           9                            37
  CLUS_4                          10                            27
  CLUS_5                          21                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP22.2) MUTATED       11      0      5     11     15      9
  DEL PEAK 51(XP22.2) WILD-TYPE     27     21     44     51     26     31
                               vv
clus                            CLUS_7
  DEL PEAK 51(XP22.2) MUTATED        0
  DEL PEAK 51(XP22.2) WILD-TYPE     21
D87V6, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          11                            27
  CLUS_2                           0                            21
  CLUS_3                           5                            44
  CLUS_4                          11                            51
  CLUS_5                          15                            26
  CLUS_6                           9                            31
  CLUS_7                           0                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP22.2) MUTATED       36     18     31
  DEL PEAK 51(XP22.2) WILD-TYPE    150    115     90
D87V7, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          36                           150
  CLUS_2                          18                           115
  CLUS_3                          31                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP22.2) MUTATED       13     29      9     34
  DEL PEAK 51(XP22.2) WILD-TYPE     66    146     70     73
D87V8, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          13                            66
  CLUS_2                          29                           146
  CLUS_3                           9                            70
  CLUS_4                          34                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP22.2) MUTATED       23     11     15      9      6     11
  DEL PEAK 51(XP22.2) WILD-TYPE     53     47     45     49     30     47
D87V9, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          23                            53
  CLUS_2                          11                            47
  CLUS_3                          15                            45
  CLUS_4                           9                            49
  CLUS_5                           6                            30
  CLUS_6                          11                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP22.2) MUTATED       46     11     18
  DEL PEAK 51(XP22.2) WILD-TYPE    155     62     54
D87V10, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          46                           155
  CLUS_2                          11                            62
  CLUS_3                          18                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 52(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XP21.1) MUTATED       35      8      7     21      3
  DEL PEAK 52(XP21.1) WILD-TYPE     88    179     29     55     16
D88V1, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          35                            88
  CLUS_2                           8                           179
  CLUS_3                           7                            29
  CLUS_4                          21                            55
  CLUS_5                           3                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP21.1) MUTATED       29     23      1     13
  DEL PEAK 52(XP21.1) WILD-TYPE     95     98     41     93
D88V2, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          29                            95
  CLUS_2                          23                            98
  CLUS_3                           1                            41
  CLUS_4                          13                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP21.1) MUTATED        8     18     16
  DEL PEAK 52(XP21.1) WILD-TYPE     74     72     75
D88V3, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                           8                            74
  CLUS_2                          18                            72
  CLUS_3                          16                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP21.1) MUTATED        5     21      4     12
  DEL PEAK 52(XP21.1) WILD-TYPE     29     62     51     79
D88V4, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                           5                            29
  CLUS_2                          21                            62
  CLUS_3                           4                            51
  CLUS_4                          12                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XP21.1) MUTATED        2      8      9      7     14
  DEL PEAK 52(XP21.1) WILD-TYPE     63     54     37     30     48
D88V5, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                           8                            54
  CLUS_3                           9                            37
  CLUS_4                           7                            30
  CLUS_5                          14                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XP21.1) MUTATED        7      0      8      8      9      8
  DEL PEAK 52(XP21.1) WILD-TYPE     31     21     41     54     32     32
                               vv
clus                            CLUS_7
  DEL PEAK 52(XP21.1) MUTATED        0
  DEL PEAK 52(XP21.1) WILD-TYPE     21
D88V6, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                           7                            31
  CLUS_2                           0                            21
  CLUS_3                           8                            41
  CLUS_4                           8                            54
  CLUS_5                           9                            32
  CLUS_6                           8                            32
  CLUS_7                           0                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP21.1) MUTATED       32     16     26
  DEL PEAK 52(XP21.1) WILD-TYPE    154    117     95
D88V7, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          32                           154
  CLUS_2                          16                           117
  CLUS_3                          26                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XP21.1) MUTATED       10     30     10     24
  DEL PEAK 52(XP21.1) WILD-TYPE     69    145     69     83
D88V8, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          10                            69
  CLUS_2                          30                           145
  CLUS_3                          10                            69
  CLUS_4                          24                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XP21.1) MUTATED       18     12     10      6      7     10
  DEL PEAK 52(XP21.1) WILD-TYPE     58     46     50     52     29     48
D88V9, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          18                            58
  CLUS_2                          12                            46
  CLUS_3                          10                            50
  CLUS_4                           6                            52
  CLUS_5                           7                            29
  CLUS_6                          10                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XP21.1) MUTATED       35     12     16
  DEL PEAK 52(XP21.1) WILD-TYPE    166     61     56
D88V10, multiclass
        clus
vv       DEL PEAK 52(XP21.1) MUTATED DEL PEAK 52(XP21.1) WILD-TYPE
  CLUS_1                          35                           166
  CLUS_2                          12                            61
  CLUS_3                          16                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = DEL PEAK 53(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 53(XQ21.33) MUTATED       27      6      5     17      1
  DEL PEAK 53(XQ21.33) WILD-TYPE     96    181     31     59     18
D89V1, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           27                             96
  CLUS_2                            6                            181
  CLUS_3                            5                             31
  CLUS_4                           17                             59
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ21.33) MUTATED       25     15      2      6
  DEL PEAK 53(XQ21.33) WILD-TYPE     99    106     40    100
D89V2, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           25                             99
  CLUS_2                           15                            106
  CLUS_3                            2                             40
  CLUS_4                            6                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ21.33) MUTATED       12     11     14
  DEL PEAK 53(XQ21.33) WILD-TYPE     70     79     77
D89V3, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           12                             70
  CLUS_2                           11                             79
  CLUS_3                           14                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ21.33) MUTATED        5     19      6      7
  DEL PEAK 53(XQ21.33) WILD-TYPE     29     64     49     84
D89V4, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                           19                             64
  CLUS_3                            6                             49
  CLUS_4                            7                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 53(XQ21.33) MUTATED        3      4      7      5     15
  DEL PEAK 53(XQ21.33) WILD-TYPE     62     58     39     32     47
D89V5, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                            4                             58
  CLUS_3                            7                             39
  CLUS_4                            5                             32
  CLUS_5                           15                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 53(XQ21.33) MUTATED        3      1      5      6      6     12
  DEL PEAK 53(XQ21.33) WILD-TYPE     35     20     44     56     35     28
                                vv
clus                             CLUS_7
  DEL PEAK 53(XQ21.33) MUTATED        1
  DEL PEAK 53(XQ21.33) WILD-TYPE     20
D89V6, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            1                             20
  CLUS_3                            5                             44
  CLUS_4                            6                             56
  CLUS_5                            6                             35
  CLUS_6                           12                             28
  CLUS_7                            1                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ21.33) MUTATED       22     10     24
  DEL PEAK 53(XQ21.33) WILD-TYPE    164    123     97
D89V7, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           22                            164
  CLUS_2                           10                            123
  CLUS_3                           24                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 53(XQ21.33) MUTATED        9     24      4     19
  DEL PEAK 53(XQ21.33) WILD-TYPE     70    151     75     88
D89V8, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                            9                             70
  CLUS_2                           24                            151
  CLUS_3                            4                             75
  CLUS_4                           19                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 53(XQ21.33) MUTATED       17      5      5      7      5      4
  DEL PEAK 53(XQ21.33) WILD-TYPE     59     53     55     51     31     54
D89V9, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                            5                             53
  CLUS_3                            5                             55
  CLUS_4                            7                             51
  CLUS_5                            5                             31
  CLUS_6                            4                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(XQ21.33) MUTATED       26      4     13
  DEL PEAK 53(XQ21.33) WILD-TYPE    175     69     59
D89V10, multiclass
        clus
vv       DEL PEAK 53(XQ21.33) MUTATED DEL PEAK 53(XQ21.33) WILD-TYPE
  CLUS_1                           26                            175
  CLUS_2                            4                             69
  CLUS_3                           13                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
