[1] "ofn"        "-oTSTES-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STES-TP/15125163/STES-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STES-TP/15101925/transformed.cor.cli.txt"

nPatients in clinical file=628, in cluster file=625, common to both=625
[1]  99 625
[1] "AMP PEAK  1(1P36.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                           101                            524 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                           101                            524 
[1] "AMP PEAK  2(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           95                           530 
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           95                           530 
[1] "AMP PEAK  3(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                          249                           376 
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                          249                           376 
[1] "AMP PEAK  4(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE 
                          244                           381 
  AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE 
                          244                           381 
[1] "AMP PEAK  5(2Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE 
                          155                           470 
  AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE 
                          155                           470 
[1] "AMP PEAK  6(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          287                           338 
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          287                           338 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           228                            397 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           228                            397 
[1] "AMP PEAK  8(5P13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE 
                          216                           409 
  AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE 
                          216                           409 
[1] "AMP PEAK  9(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE 
                          192                           433 
  AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE 
                          192                           433 
[1] "AMP PEAK 10(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                        141                         484 
  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                        141                         484 
[1] "AMP PEAK 11(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                        111                         514 
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                        111                         514 
[1] "AMP PEAK 12(7P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE 
                          353                           272 
  AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE 
                          353                           272 
[1] "AMP PEAK 13(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE 
                          340                           285 
  AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE 
                          340                           285 
[1] "AMP PEAK 14(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                          317                           308 
  AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE 
                          317                           308 
[1] "AMP PEAK 15(8P23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE 
                          229                           396 
  AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE 
                          229                           396 
[1] "AMP PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE 
                           272                            353 
  AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE 
                           272                            353 
[1] "AMP PEAK 17(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                           454                            171 
  AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE 
                           454                            171 
[1] "AMP PEAK 18(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE 
                           91                           534 
  AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE 
                           91                           534 
[1] "AMP PEAK 19(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE 
                          132                           493 
  AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE 
                          132                           493 
[1] "AMP PEAK 20(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE 
                          185                           440 
  AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE 
                          185                           440 
[1] "AMP PEAK 21(10P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE 
                            169                             456 
  AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE 
                            169                             456 
[1] "AMP PEAK 22(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE 
                           125                            500 
  AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE 
                           125                            500 
[1] "AMP PEAK 23(10Q26.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE 
                            119                             506 
  AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE 
                            119                             506 
[1] "AMP PEAK 24(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE 
                         138                          487 
  AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE 
                         138                          487 
[1] "AMP PEAK 25(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE 
                           218                            407 
  AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE 
                           218                            407 
[1] "AMP PEAK 26(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE 
                           207                            418 
  AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE 
                           207                            418 
[1] "AMP PEAK 27(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE 
                         161                          464 
  AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE 
                         161                          464 
[1] "AMP PEAK 28(13Q12.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE 
                           216                            409 
  AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE 
                           216                            409 
[1] "AMP PEAK 29(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE 
                           243                            382 
  AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE 
                           243                            382 
[1] "AMP PEAK 30(14Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE 
                           113                            512 
  AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE 
                           113                            512 
[1] "AMP PEAK 31(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE 
                           168                            457 
  AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE 
                           168                            457 
[1] "AMP PEAK 32(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE 
                         222                          403 
  AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE 
                         222                          403 
[1] "AMP PEAK 33(18P11.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE 
                            178                             447 
  AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE 
                            178                             447 
[1] "AMP PEAK 34(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE 
                           198                            427 
  AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE 
                           198                            427 
[1] "AMP PEAK 35(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE 
                            79                            546 
  AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE 
                            79                            546 
[1] "AMP PEAK 36(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE 
                         185                          440 
  AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE 
                         185                          440 
[1] "AMP PEAK 37(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE 
                            164                             461 
  AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE 
                            164                             461 
[1] "AMP PEAK 38(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE 
                           416                            209 
  AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE 
                           416                            209 
[1] "AMP PEAK 39(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE 
                        154                         471 
  AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE 
                        154                         471 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           210                            415 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           210                            415 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                          156                           469 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                          156                           469 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         46                         579 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         46                         579 
[1] "DEL PEAK  4(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE 
                         43                         582 
  DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE 
                         43                         582 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                          126                           499 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                          126                           499 
[1] "DEL PEAK  6(2Q32.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE 
                           87                           538 
  DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE 
                           87                           538 
[1] "DEL PEAK  7(2Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE 
                           85                           540 
  DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE 
                           85                           540 
[1] "DEL PEAK  8(2Q37.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE 
                          122                           503 
  DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE 
                          122                           503 
[1] "DEL PEAK  9(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE 
                          250                           375 
  DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE 
                          250                           375 
[1] "DEL PEAK 10(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE 
                          282                           343 
  DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE 
                          282                           343 
[1] "DEL PEAK 11(3Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE 
                           98                           527 
  DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE 
                           98                           527 
[1] "DEL PEAK 12(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE 
                            63                            562 
  DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE 
                            63                            562 
[1] "DEL PEAK 13(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE 
                          271                           354 
  DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE 
                          271                           354 
[1] "DEL PEAK 14(4P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE 
                          269                           356 
  DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE 
                          269                           356 
[1] "DEL PEAK 15(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE 
                          298                           327 
  DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE 
                          298                           327 
[1] "DEL PEAK 16(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE 
                          300                           325 
  DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE 
                          300                           325 
[1] "DEL PEAK 17(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE 
                          282                           343 
  DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE 
                          282                           343 
[1] "DEL PEAK 18(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE 
                          188                           437 
  DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE 
                          188                           437 
[1] "DEL PEAK 19(6Q16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE 
                          147                           478 
  DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE 
                          147                           478 
[1] "DEL PEAK 20(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE 
                        152                         473 
  DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE 
                        152                         473 
[1] "DEL PEAK 21(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE 
                          127                           498 
  DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE 
                          127                           498 
[1] "DEL PEAK 22(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE 
                          163                           462 
  DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE 
                          163                           462 
[1] "DEL PEAK 23(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE 
                          212                           413 
  DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE 
                          212                           413 
[1] "DEL PEAK 24(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE 
                        302                         323 
  DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE 
                        302                         323 
[1] "DEL PEAK 25(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE 
                          334                           291 
  DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE 
                          334                           291 
[1] "DEL PEAK 26(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE 
                           176                            449 
  DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE 
                           176                            449 
[1] "DEL PEAK 27(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE 
                           131                            494 
  DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE 
                           131                            494 
[1] "DEL PEAK 28(10P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE 
                            102                             523 
  DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE 
                            102                             523 
[1] "DEL PEAK 29(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE 
                           112                            513 
  DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE 
                           112                            513 
[1] "DEL PEAK 30(10Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE 
                           135                            490 
  DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE 
                           135                            490 
[1] "DEL PEAK 31(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE 
                            183                             442 
  DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE 
                            183                             442 
[1] "DEL PEAK 32(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE 
                           175                            450 
  DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE 
                           175                            450 
[1] "DEL PEAK 33(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE 
                         178                          447 
  DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE 
                         178                          447 
[1] "DEL PEAK 34(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE 
                           113                            512 
  DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE 
                           113                            512 
[1] "DEL PEAK 35(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE 
                           109                            516 
  DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE 
                           109                            516 
[1] "DEL PEAK 36(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE 
                            138                             487 
  DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE 
                            138                             487 
[1] "DEL PEAK 37(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE 
                           125                            500 
  DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE 
                           125                            500 
[1] "DEL PEAK 38(13Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE 
                            126                             499 
  DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE 
                            126                             499 
[1] "DEL PEAK 39(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE 
                           187                            438 
  DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE 
                           187                            438 
[1] "DEL PEAK 40(14Q32.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE 
                            190                             435 
  DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE 
                            190                             435 
[1] "DEL PEAK 41(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE 
                           183                            442 
  DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE 
                           183                            442 
[1] "DEL PEAK 42(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE 
                           178                            447 
  DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE 
                           178                            447 
[1] "DEL PEAK 43(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE 
                           148                            477 
  DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE 
                           148                            477 
[1] "DEL PEAK 44(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE 
                           265                            360 
  DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE 
                           265                            360 
[1] "DEL PEAK 45(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE 
                         267                          358 
  DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE 
                         267                          358 
[1] "DEL PEAK 46(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE 
                           103                            522 
  DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE 
                           103                            522 
[1] "DEL PEAK 47(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE 
                           292                            333 
  DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE 
                           292                            333 
[1] "DEL PEAK 48(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE 
                           323                            302 
  DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE 
                           323                            302 
[1] "DEL PEAK 49(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE 
                           249                            376 
  DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE 
                           249                            376 
[1] "DEL PEAK 50(19Q13.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE 
                            120                             505 
  DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE 
                            120                             505 
[1] "DEL PEAK 51(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE 
                            72                            553 
  DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE 
                            72                            553 
[1] "DEL PEAK 52(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE 
                           290                            335 
  DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE 
                           290                            335 
[1] "DEL PEAK 53(21Q22.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE 
                            305                             320 
  DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE 
                            305                             320 
[1] "DEL PEAK 54(22Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE 
                           230                            395 
  DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE 
                           230                            395 
[1] "DEL PEAK 55(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE 
                            235                             390 
  DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE 
                            235                             390 
[1] "DEL PEAK 56(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE 
                          150                           475 
  DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE 
                          150                           475 
[1] "DEL PEAK 57(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE 
                          143                           482 
  DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE 
                          143                           482 
[1] "DEL PEAK 58(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE 
                          146                           479 
  DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE 
                          146                           479 
[1] "DEL PEAK 59(XQ11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE 
                          103                           522 
  DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE 
                          103                           522 
[1] "DEL PEAK 60(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE 
                            96                            529 
  DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE 
                            96                            529 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 625 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 625 columns, 0 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       45     45     11
  AMP PEAK  1(1P36.22) WILD-TYPE    121    165    238
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           45                            121
  CLUS_2                           45                            165
  CLUS_3                           11                            238
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       40     36     17
  AMP PEAK  1(1P36.22) WILD-TYPE    208    121    155
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           40                            208
  CLUS_2                           36                            121
  CLUS_3                           17                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       36     23      8
  AMP PEAK  1(1P36.22) WILD-TYPE    198    106     84
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           36                            198
  CLUS_2                           23                            106
  CLUS_3                            8                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED       17     23      7     12      8
  AMP PEAK  1(1P36.22) WILD-TYPE     58    127     18     77    108
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           17                             58
  CLUS_2                           23                            127
  CLUS_3                            7                             18
  CLUS_4                           12                             77
  CLUS_5                            8                            108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       32     55     12
  AMP PEAK  1(1P36.22) WILD-TYPE    132    273    119
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           32                            132
  CLUS_2                           55                            273
  CLUS_3                           12                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED       34     20     27     13      5
  AMP PEAK  1(1P36.22) WILD-TYPE     93     85    202     82     62
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           34                             93
  CLUS_2                           20                             85
  CLUS_3                           27                            202
  CLUS_4                           13                             82
  CLUS_5                            5                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       26     37     20
  AMP PEAK  1(1P36.22) WILD-TYPE    118    172    151
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           26                            118
  CLUS_2                           37                            172
  CLUS_3                           20                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED       12     30     21      7     13
  AMP PEAK  1(1P36.22) WILD-TYPE     35     92    141     94     79
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           12                             35
  CLUS_2                           30                             92
  CLUS_3                           21                            141
  CLUS_4                            7                             94
  CLUS_5                           13                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       34     51     10
  AMP PEAK  2(1P34.2) WILD-TYPE    132    159    239
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          34                           132
  CLUS_2                          51                           159
  CLUS_3                          10                           239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       36     36     17
  AMP PEAK  2(1P34.2) WILD-TYPE    212    121    155
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          36                           212
  CLUS_2                          36                           121
  CLUS_3                          17                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       34     25      8
  AMP PEAK  2(1P34.2) WILD-TYPE    200    104     84
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          34                           200
  CLUS_2                          25                           104
  CLUS_3                           8                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED       14     24      4     18      7
  AMP PEAK  2(1P34.2) WILD-TYPE     61    126     21     71    109
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          14                            61
  CLUS_2                          24                           126
  CLUS_3                           4                            21
  CLUS_4                          18                            71
  CLUS_5                           7                           109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       33     50     12
  AMP PEAK  2(1P34.2) WILD-TYPE    131    278    119
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          33                           131
  CLUS_2                          50                           278
  CLUS_3                          12                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED       27     10     31     19      8
  AMP PEAK  2(1P34.2) WILD-TYPE    100     95    198     76     59
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          27                           100
  CLUS_2                          10                            95
  CLUS_3                          31                           198
  CLUS_4                          19                            76
  CLUS_5                           8                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       30     29     20
  AMP PEAK  2(1P34.2) WILD-TYPE    114    180    151
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          30                           114
  CLUS_2                          29                           180
  CLUS_3                          20                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED       12     24     16      8     19
  AMP PEAK  2(1P34.2) WILD-TYPE     35     98    146     93     73
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          12                            35
  CLUS_2                          24                            98
  CLUS_3                          16                           146
  CLUS_4                           8                            93
  CLUS_5                          19                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       98    121     30
  AMP PEAK  3(1Q21.3) WILD-TYPE     68     89    219
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          98                            68
  CLUS_2                         121                            89
  CLUS_3                          30                           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       99     96     37
  AMP PEAK  3(1Q21.3) WILD-TYPE    149     61    135
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          99                           149
  CLUS_2                          96                            61
  CLUS_3                          37                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED      103     59     25
  AMP PEAK  3(1Q21.3) WILD-TYPE    131     70     67
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         103                           131
  CLUS_2                          59                            70
  CLUS_3                          25                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED       44     62     11     44     26
  AMP PEAK  3(1Q21.3) WILD-TYPE     31     88     14     45     90
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          44                            31
  CLUS_2                          62                            88
  CLUS_3                          11                            14
  CLUS_4                          44                            45
  CLUS_5                          26                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       81    134     32
  AMP PEAK  3(1Q21.3) WILD-TYPE     83    194     99
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          81                            83
  CLUS_2                         134                           194
  CLUS_3                          32                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED       75     45     64     46     17
  AMP PEAK  3(1Q21.3) WILD-TYPE     52     60    165     49     50
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          75                            52
  CLUS_2                          45                            60
  CLUS_3                          64                           165
  CLUS_4                          46                            49
  CLUS_5                          17                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       76     83     48
  AMP PEAK  3(1Q21.3) WILD-TYPE     68    126    123
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          76                            68
  CLUS_2                          83                           126
  CLUS_3                          48                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED       25     64     46     27     45
  AMP PEAK  3(1Q21.3) WILD-TYPE     22     58    116     74     47
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          25                            22
  CLUS_2                          64                            58
  CLUS_3                          46                           116
  CLUS_4                          27                            74
  CLUS_5                          45                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q42.3) MUTATED       97    116     31
  AMP PEAK  4(1Q42.3) WILD-TYPE     69     94    218
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          97                            69
  CLUS_2                         116                            94
  CLUS_3                          31                           218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q42.3) MUTATED       86     99     43
  AMP PEAK  4(1Q42.3) WILD-TYPE    162     58    129
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          86                           162
  CLUS_2                          99                            58
  CLUS_3                          43                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q42.3) MUTATED       96     63     26
  AMP PEAK  4(1Q42.3) WILD-TYPE    138     66     66
D4V3, multiclass
        clus
vv       AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          96                           138
  CLUS_2                          63                            66
  CLUS_3                          26                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q42.3) MUTATED       43     54     10     48     30
  AMP PEAK  4(1Q42.3) WILD-TYPE     32     96     15     41     86
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          43                            32
  CLUS_2                          54                            96
  CLUS_3                          10                            15
  CLUS_4                          48                            41
  CLUS_5                          30                            86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q42.3) MUTATED       91    113     39
  AMP PEAK  4(1Q42.3) WILD-TYPE     73    215     92
D4V5, multiclass
        clus
vv       AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          91                            73
  CLUS_2                         113                           215
  CLUS_3                          39                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q42.3) MUTATED       77     40     55     51     20
  AMP PEAK  4(1Q42.3) WILD-TYPE     50     65    174     44     47
D4V6, multiclass
        clus
vv       AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          77                            50
  CLUS_2                          40                            65
  CLUS_3                          55                           174
  CLUS_4                          51                            44
  CLUS_5                          20                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q42.3) MUTATED       82     73     52
  AMP PEAK  4(1Q42.3) WILD-TYPE     62    136    119
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          82                            62
  CLUS_2                          73                           136
  CLUS_3                          52                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q42.3) MUTATED       27     54     46     31     49
  AMP PEAK  4(1Q42.3) WILD-TYPE     20     68    116     70     43
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q42.3) MUTATED AMP PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          27                            20
  CLUS_2                          54                            68
  CLUS_3                          46                           116
  CLUS_4                          31                            70
  CLUS_5                          49                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(2Q12.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q12.2) MUTATED       61     76     18
  AMP PEAK  5(2Q12.2) WILD-TYPE    105    134    231
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE
  CLUS_1                          61                           105
  CLUS_2                          76                           134
  CLUS_3                          18                           231
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q12.2) MUTATED       59     62     26
  AMP PEAK  5(2Q12.2) WILD-TYPE    189     95    146
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE
  CLUS_1                          59                           189
  CLUS_2                          62                            95
  CLUS_3                          26                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q12.2) MUTATED       59     48     13
  AMP PEAK  5(2Q12.2) WILD-TYPE    175     81     79
D5V3, multiclass
        clus
vv       AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE
  CLUS_1                          59                           175
  CLUS_2                          48                            81
  CLUS_3                          13                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q12.2) MUTATED       25     32      9     37     17
  AMP PEAK  5(2Q12.2) WILD-TYPE     50    118     16     52     99
D5V4, multiclass
        clus
vv       AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE
  CLUS_1                          25                            50
  CLUS_2                          32                           118
  CLUS_3                           9                            16
  CLUS_4                          37                            52
  CLUS_5                          17                            99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q12.2) MUTATED       64     73     18
  AMP PEAK  5(2Q12.2) WILD-TYPE    100    255    113
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE
  CLUS_1                          64                           100
  CLUS_2                          73                           255
  CLUS_3                          18                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q12.2) MUTATED       40     25     42     39      9
  AMP PEAK  5(2Q12.2) WILD-TYPE     87     80    187     56     58
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE
  CLUS_1                          40                            87
  CLUS_2                          25                            80
  CLUS_3                          42                           187
  CLUS_4                          39                            56
  CLUS_5                           9                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q12.2) MUTATED       56     48     31
  AMP PEAK  5(2Q12.2) WILD-TYPE     88    161    140
D5V7, multiclass
        clus
vv       AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE
  CLUS_1                          56                            88
  CLUS_2                          48                           161
  CLUS_3                          31                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q12.2) MUTATED       13     38     31     15     38
  AMP PEAK  5(2Q12.2) WILD-TYPE     34     84    131     86     54
D5V8, multiclass
        clus
vv       AMP PEAK  5(2Q12.2) MUTATED AMP PEAK  5(2Q12.2) WILD-TYPE
  CLUS_1                          13                            34
  CLUS_2                          38                            84
  CLUS_3                          31                           131
  CLUS_4                          15                            86
  CLUS_5                          38                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       68    170     49
  AMP PEAK  6(3Q26.2) WILD-TYPE     98     40    200
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          68                            98
  CLUS_2                         170                            40
  CLUS_3                          49                           200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       94    118     56
  AMP PEAK  6(3Q26.2) WILD-TYPE    154     39    116
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          94                           154
  CLUS_2                         118                            39
  CLUS_3                          56                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       98     93     26
  AMP PEAK  6(3Q26.2) WILD-TYPE    136     36     66
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          98                           136
  CLUS_2                          93                            36
  CLUS_3                          26                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED       33     60      8     76     40
  AMP PEAK  6(3Q26.2) WILD-TYPE     42     90     17     13     76
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          33                            42
  CLUS_2                          60                            90
  CLUS_3                           8                            17
  CLUS_4                          76                            13
  CLUS_5                          40                            76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      119    129     38
  AMP PEAK  6(3Q26.2) WILD-TYPE     45    199     93
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         119                            45
  CLUS_2                         129                           199
  CLUS_3                          38                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED       61     40     85     82     18
  AMP PEAK  6(3Q26.2) WILD-TYPE     66     65    144     13     49
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          61                            66
  CLUS_2                          40                            65
  CLUS_3                          85                           144
  CLUS_4                          82                            13
  CLUS_5                          18                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      104     79     63
  AMP PEAK  6(3Q26.2) WILD-TYPE     40    130    108
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         104                            40
  CLUS_2                          79                           130
  CLUS_3                          63                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED       23     54     60     29     80
  AMP PEAK  6(3Q26.2) WILD-TYPE     24     68    102     72     12
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          23                            24
  CLUS_2                          54                            68
  CLUS_3                          60                           102
  CLUS_4                          29                            72
  CLUS_5                          80                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       85    116     27
  AMP PEAK  7(5P15.33) WILD-TYPE     81     94    222
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           85                             81
  CLUS_2                          116                             94
  CLUS_3                           27                            222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       69    104     42
  AMP PEAK  7(5P15.33) WILD-TYPE    179     53    130
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           69                            179
  CLUS_2                          104                             53
  CLUS_3                           42                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       80     75     18
  AMP PEAK  7(5P15.33) WILD-TYPE    154     54     74
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           80                            154
  CLUS_2                           75                             54
  CLUS_3                           18                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       39     46      5     60     23
  AMP PEAK  7(5P15.33) WILD-TYPE     36    104     20     29     93
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           39                             36
  CLUS_2                           46                            104
  CLUS_3                            5                             20
  CLUS_4                           60                             29
  CLUS_5                           23                             93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       96    102     29
  AMP PEAK  7(5P15.33) WILD-TYPE     68    226    102
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           96                             68
  CLUS_2                          102                            226
  CLUS_3                           29                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       69     24     57     64     13
  AMP PEAK  7(5P15.33) WILD-TYPE     58     81    172     31     54
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           69                             58
  CLUS_2                           24                             81
  CLUS_3                           57                            172
  CLUS_4                           64                             31
  CLUS_5                           13                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       87     76     38
  AMP PEAK  7(5P15.33) WILD-TYPE     57    133    133
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           87                             57
  CLUS_2                           76                            133
  CLUS_3                           38                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       23     48     48     19     63
  AMP PEAK  7(5P15.33) WILD-TYPE     24     74    114     82     29
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           23                             24
  CLUS_2                           48                             74
  CLUS_3                           48                            114
  CLUS_4                           19                             82
  CLUS_5                           63                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(5P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P13.1) MUTATED       85    102     29
  AMP PEAK  8(5P13.1) WILD-TYPE     81    108    220
D8V1, multiclass
        clus
vv       AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE
  CLUS_1                          85                            81
  CLUS_2                         102                           108
  CLUS_3                          29                           220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P13.1) MUTATED       65     93     43
  AMP PEAK  8(5P13.1) WILD-TYPE    183     64    129
D8V2, multiclass
        clus
vv       AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE
  CLUS_1                          65                           183
  CLUS_2                          93                            64
  CLUS_3                          43                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P13.1) MUTATED       74     68     22
  AMP PEAK  8(5P13.1) WILD-TYPE    160     61     70
D8V3, multiclass
        clus
vv       AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE
  CLUS_1                          74                           160
  CLUS_2                          68                            61
  CLUS_3                          22                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P13.1) MUTATED       34     45      6     53     26
  AMP PEAK  8(5P13.1) WILD-TYPE     41    105     19     36     90
D8V4, multiclass
        clus
vv       AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE
  CLUS_1                          34                            41
  CLUS_2                          45                           105
  CLUS_3                           6                            19
  CLUS_4                          53                            36
  CLUS_5                          26                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P13.1) MUTATED       88     94     34
  AMP PEAK  8(5P13.1) WILD-TYPE     76    234     97
D8V5, multiclass
        clus
vv       AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE
  CLUS_1                          88                            76
  CLUS_2                          94                           234
  CLUS_3                          34                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P13.1) MUTATED       68     18     58     56     16
  AMP PEAK  8(5P13.1) WILD-TYPE     59     87    171     39     51
D8V6, multiclass
        clus
vv       AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE
  CLUS_1                          68                            59
  CLUS_2                          18                            87
  CLUS_3                          58                           171
  CLUS_4                          56                            39
  CLUS_5                          16                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P13.1) MUTATED       78     66     46
  AMP PEAK  8(5P13.1) WILD-TYPE     66    143    125
D8V7, multiclass
        clus
vv       AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE
  CLUS_1                          78                            66
  CLUS_2                          66                           143
  CLUS_3                          46                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5P13.1) MUTATED       21     43     49     22     55
  AMP PEAK  8(5P13.1) WILD-TYPE     26     79    113     79     37
D8V8, multiclass
        clus
vv       AMP PEAK  8(5P13.1) MUTATED AMP PEAK  8(5P13.1) WILD-TYPE
  CLUS_1                          21                            26
  CLUS_2                          43                            79
  CLUS_3                          49                           113
  CLUS_4                          22                            79
  CLUS_5                          55                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.1) MUTATED       94     74     24
  AMP PEAK  9(6P21.1) WILD-TYPE     72    136    225
D9V1, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          94                            72
  CLUS_2                          74                           136
  CLUS_3                          24                           225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.1) MUTATED       80     69     27
  AMP PEAK  9(6P21.1) WILD-TYPE    168     88    145
D9V2, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          80                           168
  CLUS_2                          69                            88
  CLUS_3                          27                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.1) MUTATED       80     41     18
  AMP PEAK  9(6P21.1) WILD-TYPE    154     88     74
D9V3, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          80                           154
  CLUS_2                          41                            88
  CLUS_3                          18                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P21.1) MUTATED       37     50     12     24     16
  AMP PEAK  9(6P21.1) WILD-TYPE     38    100     13     65    100
D9V4, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          37                            38
  CLUS_2                          50                           100
  CLUS_3                          12                            13
  CLUS_4                          24                            65
  CLUS_5                          16                           100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.1) MUTATED       60    111     19
  AMP PEAK  9(6P21.1) WILD-TYPE    104    217    112
D9V5, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          60                           104
  CLUS_2                         111                           217
  CLUS_3                          19                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P21.1) MUTATED       66     35     53     26     10
  AMP PEAK  9(6P21.1) WILD-TYPE     61     70    176     69     57
D9V6, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          66                            61
  CLUS_2                          35                            70
  CLUS_3                          53                           176
  CLUS_4                          26                            69
  CLUS_5                          10                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.1) MUTATED       58     70     38
  AMP PEAK  9(6P21.1) WILD-TYPE     86    139    133
D9V7, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          58                            86
  CLUS_2                          70                           139
  CLUS_3                          38                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P21.1) MUTATED       26     60     38     16     26
  AMP PEAK  9(6P21.1) WILD-TYPE     21     62    124     85     66
D9V8, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                          60                            62
  CLUS_3                          38                           124
  CLUS_4                          16                            85
  CLUS_5                          26                            66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6Q12) MUTATED       67     53     21
  AMP PEAK 10(6Q12) WILD-TYPE     99    157    228
D10V1, multiclass
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  CLUS_1                        67                          99
  CLUS_2                        53                         157
  CLUS_3                        21                         228
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6Q12) MUTATED       55     55     17
  AMP PEAK 10(6Q12) WILD-TYPE    193    102    155
D10V2, multiclass
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  CLUS_1                        55                         193
  CLUS_2                        55                         102
  CLUS_3                        17                         155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6Q12) MUTATED       57     35     15
  AMP PEAK 10(6Q12) WILD-TYPE    177     94     77
D10V3, multiclass
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  CLUS_1                        57                         177
  CLUS_2                        35                          94
  CLUS_3                        15                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6Q12) MUTATED       31     35     10     21     10
  AMP PEAK 10(6Q12) WILD-TYPE     44    115     15     68    106
D10V4, multiclass
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  CLUS_1                        31                          44
  CLUS_2                        35                         115
  CLUS_3                        10                          15
  CLUS_4                        21                          68
  CLUS_5                        10                         106
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6Q12) MUTATED       49     73     18
  AMP PEAK 10(6Q12) WILD-TYPE    115    255    113
D10V5, multiclass
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  CLUS_1                        49                         115
  CLUS_2                        73                         255
  CLUS_3                        18                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6Q12) MUTATED       49     25     37     23      6
  AMP PEAK 10(6Q12) WILD-TYPE     78     80    192     72     61
D10V6, multiclass
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  CLUS_1                        49                          78
  CLUS_2                        25                          80
  CLUS_3                        37                         192
  CLUS_4                        23                          72
  CLUS_5                         6                          61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6Q12) MUTATED       47     46     26
  AMP PEAK 10(6Q12) WILD-TYPE     97    163    145
D10V7, multiclass
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  CLUS_1                        47                          97
  CLUS_2                        46                         163
  CLUS_3                        26                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6Q12) MUTATED       24     36     25     12     22
  AMP PEAK 10(6Q12) WILD-TYPE     23     86    137     89     70
D10V8, multiclass
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  CLUS_1                        24                          23
  CLUS_2                        36                          86
  CLUS_3                        25                         137
  CLUS_4                        12                          89
  CLUS_5                        22                          70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q21) MUTATED       57     34     20
  AMP PEAK 11(6Q21) WILD-TYPE    109    176    229
D11V1, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        57                         109
  CLUS_2                        34                         176
  CLUS_3                        20                         229
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q21) MUTATED       43     38     17
  AMP PEAK 11(6Q21) WILD-TYPE    205    119    155
D11V2, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        43                         205
  CLUS_2                        38                         119
  CLUS_3                        17                         155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q21) MUTATED       44     21     14
  AMP PEAK 11(6Q21) WILD-TYPE    190    108     78
D11V3, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        44                         190
  CLUS_2                        21                         108
  CLUS_3                        14                          78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q21) MUTATED       25     27      8      8     11
  AMP PEAK 11(6Q21) WILD-TYPE     50    123     17     81    105
D11V4, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        25                          50
  CLUS_2                        27                         123
  CLUS_3                         8                          17
  CLUS_4                         8                          81
  CLUS_5                        11                         105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q21) MUTATED       33     61     16
  AMP PEAK 11(6Q21) WILD-TYPE    131    267    115
D11V5, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        33                         131
  CLUS_2                        61                         267
  CLUS_3                        16                         115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q21) MUTATED       45     20     31      9      5
  AMP PEAK 11(6Q21) WILD-TYPE     82     85    198     86     62
D11V6, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        45                          82
  CLUS_2                        20                          85
  CLUS_3                        31                         198
  CLUS_4                         9                          86
  CLUS_5                         5                          62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q21) MUTATED       29     39     22
  AMP PEAK 11(6Q21) WILD-TYPE    115    170    149
D11V7, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        29                         115
  CLUS_2                        39                         170
  CLUS_3                        22                         149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q21) MUTATED       19     33     18     11      9
  AMP PEAK 11(6Q21) WILD-TYPE     28     89    144     90     83
D11V8, multiclass
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  CLUS_1                        19                          28
  CLUS_2                        33                          89
  CLUS_3                        18                         144
  CLUS_4                        11                          90
  CLUS_5                         9                          83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7P22.3) MUTATED      128    148     77
  AMP PEAK 12(7P22.3) WILD-TYPE     38     62    172
D12V1, multiclass
        clus
vv       AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                         128                            38
  CLUS_2                         148                            62
  CLUS_3                          77                           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7P22.3) MUTATED      154    106     67
  AMP PEAK 12(7P22.3) WILD-TYPE     94     51    105
D12V2, multiclass
        clus
vv       AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                         154                            94
  CLUS_2                         106                            51
  CLUS_3                          67                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7P22.3) MUTATED      144     86     35
  AMP PEAK 12(7P22.3) WILD-TYPE     90     43     57
D12V3, multiclass
        clus
vv       AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                         144                            90
  CLUS_2                          86                            43
  CLUS_3                          35                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7P22.3) MUTATED       56     87     15     59     48
  AMP PEAK 12(7P22.3) WILD-TYPE     19     63     10     30     68
D12V4, multiclass
        clus
vv       AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          56                            19
  CLUS_2                          87                            63
  CLUS_3                          15                            10
  CLUS_4                          59                            30
  CLUS_5                          48                            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7P22.3) MUTATED      111    190     51
  AMP PEAK 12(7P22.3) WILD-TYPE     53    138     80
D12V5, multiclass
        clus
vv       AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                         111                            53
  CLUS_2                         190                           138
  CLUS_3                          51                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7P22.3) MUTATED       89     64    112     62     25
  AMP PEAK 12(7P22.3) WILD-TYPE     38     41    117     33     42
D12V6, multiclass
        clus
vv       AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          89                            38
  CLUS_2                          64                            41
  CLUS_3                         112                           117
  CLUS_4                          62                            33
  CLUS_5                          25                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7P22.3) MUTATED      102    120     77
  AMP PEAK 12(7P22.3) WILD-TYPE     42     89     94
D12V7, multiclass
        clus
vv       AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                         102                            42
  CLUS_2                         120                            89
  CLUS_3                          77                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7P22.3) MUTATED       37     79     83     40     60
  AMP PEAK 12(7P22.3) WILD-TYPE     10     43     79     61     32
D12V8, multiclass
        clus
vv       AMP PEAK 12(7P22.3) MUTATED AMP PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          37                            10
  CLUS_2                          79                            43
  CLUS_3                          83                            79
  CLUS_4                          40                            61
  CLUS_5                          60                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7P11.2) MUTATED      117    143     80
  AMP PEAK 13(7P11.2) WILD-TYPE     49     67    169
D13V1, multiclass
        clus
vv       AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE
  CLUS_1                         117                            49
  CLUS_2                         143                            67
  CLUS_3                          80                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7P11.2) MUTATED      150    103     64
  AMP PEAK 13(7P11.2) WILD-TYPE     98     54    108
D13V2, multiclass
        clus
vv       AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE
  CLUS_1                         150                            98
  CLUS_2                         103                            54
  CLUS_3                          64                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7P11.2) MUTATED      130     85     34
  AMP PEAK 13(7P11.2) WILD-TYPE    104     44     58
D13V3, multiclass
        clus
vv       AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE
  CLUS_1                         130                           104
  CLUS_2                          85                            44
  CLUS_3                          34                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7P11.2) MUTATED       48     79     19     57     46
  AMP PEAK 13(7P11.2) WILD-TYPE     27     71      6     32     70
D13V4, multiclass
        clus
vv       AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE
  CLUS_1                          48                            27
  CLUS_2                          79                            71
  CLUS_3                          19                             6
  CLUS_4                          57                            32
  CLUS_5                          46                            70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7P11.2) MUTATED      105    183     50
  AMP PEAK 13(7P11.2) WILD-TYPE     59    145     81
D13V5, multiclass
        clus
vv       AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE
  CLUS_1                         105                            59
  CLUS_2                         183                           145
  CLUS_3                          50                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7P11.2) MUTATED       79     57    119     59     24
  AMP PEAK 13(7P11.2) WILD-TYPE     48     48    110     36     43
D13V6, multiclass
        clus
vv       AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE
  CLUS_1                          79                            48
  CLUS_2                          57                            48
  CLUS_3                         119                           110
  CLUS_4                          59                            36
  CLUS_5                          24                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7P11.2) MUTATED      100    113     72
  AMP PEAK 13(7P11.2) WILD-TYPE     44     96     99
D13V7, multiclass
        clus
vv       AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE
  CLUS_1                         100                            44
  CLUS_2                         113                            96
  CLUS_3                          72                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7P11.2) MUTATED       34     80     75     38     58
  AMP PEAK 13(7P11.2) WILD-TYPE     13     42     87     63     34
D13V8, multiclass
        clus
vv       AMP PEAK 13(7P11.2) MUTATED AMP PEAK 13(7P11.2) WILD-TYPE
  CLUS_1                          34                            13
  CLUS_2                          80                            42
  CLUS_3                          75                            87
  CLUS_4                          38                            63
  CLUS_5                          58                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q21.2) MUTATED       99    139     79
  AMP PEAK 14(7Q21.2) WILD-TYPE     67     71    170
D14V1, multiclass
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  CLUS_1                          99                            67
  CLUS_2                         139                            71
  CLUS_3                          79                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q21.2) MUTATED      132     95     65
  AMP PEAK 14(7Q21.2) WILD-TYPE    116     62    107
D14V2, multiclass
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  CLUS_1                         132                           116
  CLUS_2                          95                            62
  CLUS_3                          65                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q21.2) MUTATED      115     83     34
  AMP PEAK 14(7Q21.2) WILD-TYPE    119     46     58
D14V3, multiclass
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  CLUS_1                         115                           119
  CLUS_2                          83                            46
  CLUS_3                          34                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7Q21.2) MUTATED       42     75     13     55     47
  AMP PEAK 14(7Q21.2) WILD-TYPE     33     75     12     34     69
D14V4, multiclass
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  CLUS_1                          42                            33
  CLUS_2                          75                            75
  CLUS_3                          13                            12
  CLUS_4                          55                            34
  CLUS_5                          47                            69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q21.2) MUTATED       94    171     50
  AMP PEAK 14(7Q21.2) WILD-TYPE     70    157     81
D14V5, multiclass
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  CLUS_1                          94                            70
  CLUS_2                         171                           157
  CLUS_3                          50                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7Q21.2) MUTATED       68     61    103     59     24
  AMP PEAK 14(7Q21.2) WILD-TYPE     59     44    126     36     43
D14V6, multiclass
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  CLUS_1                          68                            59
  CLUS_2                          61                            44
  CLUS_3                         103                           126
  CLUS_4                          59                            36
  CLUS_5                          24                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q21.2) MUTATED       95    102     67
  AMP PEAK 14(7Q21.2) WILD-TYPE     49    107    104
D14V7, multiclass
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  CLUS_1                          95                            49
  CLUS_2                         102                           107
  CLUS_3                          67                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(7Q21.2) MUTATED       26     69     74     38     57
  AMP PEAK 14(7Q21.2) WILD-TYPE     21     53     88     63     35
D14V8, multiclass
        clus
vv       AMP PEAK 14(7Q21.2) MUTATED AMP PEAK 14(7Q21.2) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                          69                            53
  CLUS_3                          74                            88
  CLUS_4                          38                            63
  CLUS_5                          57                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8P23.1) MUTATED       59     54    116
  AMP PEAK 15(8P23.1) WILD-TYPE    107    156    133
D15V1, multiclass
        clus
vv       AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          59                           107
  CLUS_2                          54                           156
  CLUS_3                         116                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8P23.1) MUTATED      119     33     54
  AMP PEAK 15(8P23.1) WILD-TYPE    129    124    118
D15V2, multiclass
        clus
vv       AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                         119                           129
  CLUS_2                          33                           124
  CLUS_3                          54                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8P23.1) MUTATED      109     20     30
  AMP PEAK 15(8P23.1) WILD-TYPE    125    109     62
D15V3, multiclass
        clus
vv       AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                         109                           125
  CLUS_2                          20                           109
  CLUS_3                          30                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8P23.1) MUTATED       18     74      2     17     48
  AMP PEAK 15(8P23.1) WILD-TYPE     57     76     23     72     68
D15V4, multiclass
        clus
vv       AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          18                            57
  CLUS_2                          74                            76
  CLUS_3                           2                            23
  CLUS_4                          17                            72
  CLUS_5                          48                            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8P23.1) MUTATED       40    146     42
  AMP PEAK 15(8P23.1) WILD-TYPE    124    182     89
D15V5, multiclass
        clus
vv       AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          40                           124
  CLUS_2                         146                           182
  CLUS_3                          42                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8P23.1) MUTATED       44     54     88     18     24
  AMP PEAK 15(8P23.1) WILD-TYPE     83     51    141     77     43
D15V6, multiclass
        clus
vv       AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          44                            83
  CLUS_2                          54                            51
  CLUS_3                          88                           141
  CLUS_4                          18                            77
  CLUS_5                          24                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8P23.1) MUTATED       33     92     59
  AMP PEAK 15(8P23.1) WILD-TYPE    111    117    112
D15V7, multiclass
        clus
vv       AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          33                           111
  CLUS_2                          92                           117
  CLUS_3                          59                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8P23.1) MUTATED       11     53     64     40     16
  AMP PEAK 15(8P23.1) WILD-TYPE     36     69     98     61     76
D15V8, multiclass
        clus
vv       AMP PEAK 15(8P23.1) MUTATED AMP PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          11                            36
  CLUS_2                          53                            69
  CLUS_3                          64                            98
  CLUS_4                          40                            61
  CLUS_5                          16                            76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8P11.21) MUTATED       67     87    118
  AMP PEAK 16(8P11.21) WILD-TYPE     99    123    131
D16V1, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           67                             99
  CLUS_2                           87                            123
  CLUS_3                          118                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8P11.21) MUTATED      120     68     60
  AMP PEAK 16(8P11.21) WILD-TYPE    128     89    112
D16V2, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                          120                            128
  CLUS_2                           68                             89
  CLUS_3                           60                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8P11.21) MUTATED      114     51     30
  AMP PEAK 16(8P11.21) WILD-TYPE    120     78     62
D16V3, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                          114                            120
  CLUS_2                           51                             78
  CLUS_3                           30                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8P11.21) MUTATED       28     75      6     40     46
  AMP PEAK 16(8P11.21) WILD-TYPE     47     75     19     49     70
D16V4, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           28                             47
  CLUS_2                           75                             75
  CLUS_3                            6                             19
  CLUS_4                           40                             49
  CLUS_5                           46                             70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8P11.21) MUTATED       68    155     48
  AMP PEAK 16(8P11.21) WILD-TYPE     96    173     83
D16V5, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           68                             96
  CLUS_2                          155                            173
  CLUS_3                           48                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8P11.21) MUTATED       52     61     94     43     21
  AMP PEAK 16(8P11.21) WILD-TYPE     75     44    135     52     46
D16V6, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           52                             75
  CLUS_2                           61                             44
  CLUS_3                           94                            135
  CLUS_4                           43                             52
  CLUS_5                           21                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(8P11.21) MUTATED       59     96     68
  AMP PEAK 16(8P11.21) WILD-TYPE     85    113    103
D16V7, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           59                             85
  CLUS_2                           96                            113
  CLUS_3                           68                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(8P11.21) MUTATED       16     60     69     39     39
  AMP PEAK 16(8P11.21) WILD-TYPE     31     62     93     62     53
D16V8, multiclass
        clus
vv       AMP PEAK 16(8P11.21) MUTATED AMP PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           16                             31
  CLUS_2                           60                             62
  CLUS_3                           69                             93
  CLUS_4                           39                             62
  CLUS_5                           39                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(8Q24.21) MUTATED      143    164    147
  AMP PEAK 17(8Q24.21) WILD-TYPE     23     46    102
D17V1, multiclass
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  CLUS_1                          143                             23
  CLUS_2                          164                             46
  CLUS_3                          147                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(8Q24.21) MUTATED      186    132     99
  AMP PEAK 17(8Q24.21) WILD-TYPE     62     25     73
D17V2, multiclass
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  CLUS_1                          186                             62
  CLUS_2                          132                             25
  CLUS_3                           99                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(8Q24.21) MUTATED      170    100     49
  AMP PEAK 17(8Q24.21) WILD-TYPE     64     29     43
D17V3, multiclass
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  CLUS_1                          170                             64
  CLUS_2                          100                             29
  CLUS_3                           49                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(8Q24.21) MUTATED       63    107     14     73     62
  AMP PEAK 17(8Q24.21) WILD-TYPE     12     43     11     16     54
D17V4, multiclass
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  CLUS_1                           63                             12
  CLUS_2                          107                             43
  CLUS_3                           14                             11
  CLUS_4                           73                             16
  CLUS_5                           62                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(8Q24.21) MUTATED      140    238     74
  AMP PEAK 17(8Q24.21) WILD-TYPE     24     90     57
D17V5, multiclass
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  CLUS_1                          140                             24
  CLUS_2                          238                             90
  CLUS_3                           74                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(8Q24.21) MUTATED      106     86    147     78     35
  AMP PEAK 17(8Q24.21) WILD-TYPE     21     19     82     17     32
D17V6, multiclass
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  CLUS_1                          106                             21
  CLUS_2                           86                             19
  CLUS_3                          147                             82
  CLUS_4                           78                             17
  CLUS_5                           35                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(8Q24.21) MUTATED      121    150    109
  AMP PEAK 17(8Q24.21) WILD-TYPE     23     59     62
D17V7, multiclass
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  CLUS_1                          121                             23
  CLUS_2                          150                             59
  CLUS_3                          109                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(8Q24.21) MUTATED       40    101    104     61     74
  AMP PEAK 17(8Q24.21) WILD-TYPE      7     21     58     40     18
D17V8, multiclass
        clus
vv       AMP PEAK 17(8Q24.21) MUTATED AMP PEAK 17(8Q24.21) WILD-TYPE
  CLUS_1                           40                              7
  CLUS_2                          101                             21
  CLUS_3                          104                             58
  CLUS_4                           61                             40
  CLUS_5                           74                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9P24.1) MUTATED       30     31     30
  AMP PEAK 18(9P24.1) WILD-TYPE    136    179    219
D18V1, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          30                           136
  CLUS_2                          31                           179
  CLUS_3                          30                           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9P24.1) MUTATED       37     27     20
  AMP PEAK 18(9P24.1) WILD-TYPE    211    130    152
D18V2, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          37                           211
  CLUS_2                          27                           130
  CLUS_3                          20                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9P24.1) MUTATED       37     25      8
  AMP PEAK 18(9P24.1) WILD-TYPE    197    104     84
D18V3, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          37                           197
  CLUS_2                          25                           104
  CLUS_3                           8                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9P24.1) MUTATED       18     20      4     14     14
  AMP PEAK 18(9P24.1) WILD-TYPE     57    130     21     75    102
D18V4, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          18                            57
  CLUS_2                          20                           130
  CLUS_3                           4                            21
  CLUS_4                          14                            75
  CLUS_5                          14                           102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9P24.1) MUTATED       34     41     15
  AMP PEAK 18(9P24.1) WILD-TYPE    130    287    116
D18V5, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          34                           130
  CLUS_2                          41                           287
  CLUS_3                          15                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9P24.1) MUTATED       23     11     37     15      4
  AMP PEAK 18(9P24.1) WILD-TYPE    104     94    192     80     63
D18V6, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          23                           104
  CLUS_2                          11                            94
  CLUS_3                          37                           192
  CLUS_4                          15                            80
  CLUS_5                           4                            63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9P24.1) MUTATED       27     28     17
  AMP PEAK 18(9P24.1) WILD-TYPE    117    181    154
D18V7, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          27                           117
  CLUS_2                          28                           181
  CLUS_3                          17                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9P24.1) MUTATED       12     16     21      8     15
  AMP PEAK 18(9P24.1) WILD-TYPE     35    106    141     93     77
D18V8, multiclass
        clus
vv       AMP PEAK 18(9P24.1) MUTATED AMP PEAK 18(9P24.1) WILD-TYPE
  CLUS_1                          12                            35
  CLUS_2                          16                           106
  CLUS_3                          21                           141
  CLUS_4                           8                            93
  CLUS_5                          15                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(9P13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(9P13.3) MUTATED       50     47     35
  AMP PEAK 19(9P13.3) WILD-TYPE    116    163    214
D19V1, multiclass
        clus
vv       AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE
  CLUS_1                          50                           116
  CLUS_2                          47                           163
  CLUS_3                          35                           214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(9P13.3) MUTATED       56     37     31
  AMP PEAK 19(9P13.3) WILD-TYPE    192    120    141
D19V2, multiclass
        clus
vv       AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE
  CLUS_1                          56                           192
  CLUS_2                          37                           120
  CLUS_3                          31                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(9P13.3) MUTATED       53     28      7
  AMP PEAK 19(9P13.3) WILD-TYPE    181    101     85
D19V3, multiclass
        clus
vv       AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE
  CLUS_1                          53                           181
  CLUS_2                          28                           101
  CLUS_3                           7                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(9P13.3) MUTATED       19     32      5     18     14
  AMP PEAK 19(9P13.3) WILD-TYPE     56    118     20     71    102
D19V4, multiclass
        clus
vv       AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE
  CLUS_1                          19                            56
  CLUS_2                          32                           118
  CLUS_3                           5                            20
  CLUS_4                          18                            71
  CLUS_5                          14                           102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(9P13.3) MUTATED       45     68     19
  AMP PEAK 19(9P13.3) WILD-TYPE    119    260    112
D19V5, multiclass
        clus
vv       AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE
  CLUS_1                          45                           119
  CLUS_2                          68                           260
  CLUS_3                          19                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(9P13.3) MUTATED       36     23     46     19      8
  AMP PEAK 19(9P13.3) WILD-TYPE     91     82    183     76     59
D19V6, multiclass
        clus
vv       AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE
  CLUS_1                          36                            91
  CLUS_2                          23                            82
  CLUS_3                          46                           183
  CLUS_4                          19                            76
  CLUS_5                           8                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(9P13.3) MUTATED       39     47     28
  AMP PEAK 19(9P13.3) WILD-TYPE    105    162    143
D19V7, multiclass
        clus
vv       AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE
  CLUS_1                          39                           105
  CLUS_2                          47                           162
  CLUS_3                          28                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(9P13.3) MUTATED       16     36     30     13     19
  AMP PEAK 19(9P13.3) WILD-TYPE     31     86    132     88     73
D19V8, multiclass
        clus
vv       AMP PEAK 19(9P13.3) MUTATED AMP PEAK 19(9P13.3) WILD-TYPE
  CLUS_1                          16                            31
  CLUS_2                          36                            86
  CLUS_3                          30                           132
  CLUS_4                          13                            88
  CLUS_5                          19                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(9Q34.3) MUTATED       68     78     39
  AMP PEAK 20(9Q34.3) WILD-TYPE     98    132    210
D20V1, multiclass
        clus
vv       AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE
  CLUS_1                          68                            98
  CLUS_2                          78                           132
  CLUS_3                          39                           210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(9Q34.3) MUTATED       71     61     38
  AMP PEAK 20(9Q34.3) WILD-TYPE    177     96    134
D20V2, multiclass
        clus
vv       AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE
  CLUS_1                          71                           177
  CLUS_2                          61                            96
  CLUS_3                          38                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(9Q34.3) MUTATED       61     49     16
  AMP PEAK 20(9Q34.3) WILD-TYPE    173     80     76
D20V3, multiclass
        clus
vv       AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE
  CLUS_1                          61                           173
  CLUS_2                          49                            80
  CLUS_3                          16                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(9Q34.3) MUTATED       25     39      8     32     22
  AMP PEAK 20(9Q34.3) WILD-TYPE     50    111     17     57     94
D20V4, multiclass
        clus
vv       AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE
  CLUS_1                          25                            50
  CLUS_2                          39                           111
  CLUS_3                           8                            17
  CLUS_4                          32                            57
  CLUS_5                          22                            94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(9Q34.3) MUTATED       62     93     29
  AMP PEAK 20(9Q34.3) WILD-TYPE    102    235    102
D20V5, multiclass
        clus
vv       AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE
  CLUS_1                          62                           102
  CLUS_2                          93                           235
  CLUS_3                          29                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(9Q34.3) MUTATED       41     30     66     34     13
  AMP PEAK 20(9Q34.3) WILD-TYPE     86     75    163     61     54
D20V6, multiclass
        clus
vv       AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE
  CLUS_1                          41                            86
  CLUS_2                          30                            75
  CLUS_3                          66                           163
  CLUS_4                          34                            61
  CLUS_5                          13                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(9Q34.3) MUTATED       54     54     41
  AMP PEAK 20(9Q34.3) WILD-TYPE     90    155    130
D20V7, multiclass
        clus
vv       AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE
  CLUS_1                          54                            90
  CLUS_2                          54                           155
  CLUS_3                          41                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(9Q34.3) MUTATED       15     40     41     20     33
  AMP PEAK 20(9Q34.3) WILD-TYPE     32     82    121     81     59
D20V8, multiclass
        clus
vv       AMP PEAK 20(9Q34.3) MUTATED AMP PEAK 20(9Q34.3) WILD-TYPE
  CLUS_1                          15                            32
  CLUS_2                          40                            82
  CLUS_3                          41                           121
  CLUS_4                          20                            81
  CLUS_5                          33                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(10P11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10P11.22) MUTATED       75     65     29
  AMP PEAK 21(10P11.22) WILD-TYPE     91    145    220
D21V1, multiclass
        clus
vv       AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE
  CLUS_1                            75                              91
  CLUS_2                            65                             145
  CLUS_3                            29                             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10P11.22) MUTATED       72     54     31
  AMP PEAK 21(10P11.22) WILD-TYPE    176    103    141
D21V2, multiclass
        clus
vv       AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE
  CLUS_1                            72                             176
  CLUS_2                            54                             103
  CLUS_3                            31                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10P11.22) MUTATED       69     31     20
  AMP PEAK 21(10P11.22) WILD-TYPE    165     98     72
D21V3, multiclass
        clus
vv       AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE
  CLUS_1                            69                             165
  CLUS_2                            31                              98
  CLUS_3                            20                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10P11.22) MUTATED       33     38      7     19     23
  AMP PEAK 21(10P11.22) WILD-TYPE     42    112     18     70     93
D21V4, multiclass
        clus
vv       AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE
  CLUS_1                            33                              42
  CLUS_2                            38                             112
  CLUS_3                             7                              18
  CLUS_4                            19                              70
  CLUS_5                            23                              93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10P11.22) MUTATED       44     93     31
  AMP PEAK 21(10P11.22) WILD-TYPE    120    235    100
D21V5, multiclass
        clus
vv       AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE
  CLUS_1                            44                             120
  CLUS_2                            93                             235
  CLUS_3                            31                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10P11.22) MUTATED       56     29     50     21     12
  AMP PEAK 21(10P11.22) WILD-TYPE     71     76    179     74     55
D21V6, multiclass
        clus
vv       AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE
  CLUS_1                            56                              71
  CLUS_2                            29                              76
  CLUS_3                            50                             179
  CLUS_4                            21                              74
  CLUS_5                            12                              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10P11.22) MUTATED       44     62     37
  AMP PEAK 21(10P11.22) WILD-TYPE    100    147    134
D21V7, multiclass
        clus
vv       AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE
  CLUS_1                            44                             100
  CLUS_2                            62                             147
  CLUS_3                            37                             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10P11.22) MUTATED       15     47     36     23     22
  AMP PEAK 21(10P11.22) WILD-TYPE     32     75    126     78     70
D21V8, multiclass
        clus
vv       AMP PEAK 21(10P11.22) MUTATED AMP PEAK 21(10P11.22) WILD-TYPE
  CLUS_1                            15                              32
  CLUS_2                            47                              75
  CLUS_3                            36                             126
  CLUS_4                            23                              78
  CLUS_5                            22                              70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(10Q22.2) MUTATED       43     56     26
  AMP PEAK 22(10Q22.2) WILD-TYPE    123    154    223
D22V1, multiclass
        clus
vv       AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE
  CLUS_1                           43                            123
  CLUS_2                           56                            154
  CLUS_3                           26                            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(10Q22.2) MUTATED       57     35     24
  AMP PEAK 22(10Q22.2) WILD-TYPE    191    122    148
D22V2, multiclass
        clus
vv       AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE
  CLUS_1                           57                            191
  CLUS_2                           35                            122
  CLUS_3                           24                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(10Q22.2) MUTATED       48     25     18
  AMP PEAK 22(10Q22.2) WILD-TYPE    186    104     74
D22V3, multiclass
        clus
vv       AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE
  CLUS_1                           48                            186
  CLUS_2                           25                            104
  CLUS_3                           18                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(10Q22.2) MUTATED       25     29      5     11     21
  AMP PEAK 22(10Q22.2) WILD-TYPE     50    121     20     78     95
D22V4, multiclass
        clus
vv       AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE
  CLUS_1                           25                             50
  CLUS_2                           29                            121
  CLUS_3                            5                             20
  CLUS_4                           11                             78
  CLUS_5                           21                             95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(10Q22.2) MUTATED       31     69     23
  AMP PEAK 22(10Q22.2) WILD-TYPE    133    259    108
D22V5, multiclass
        clus
vv       AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE
  CLUS_1                           31                            133
  CLUS_2                           69                            259
  CLUS_3                           23                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(10Q22.2) MUTATED       32     17     49     15     10
  AMP PEAK 22(10Q22.2) WILD-TYPE     95     88    180     80     57
D22V6, multiclass
        clus
vv       AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE
  CLUS_1                           32                             95
  CLUS_2                           17                             88
  CLUS_3                           49                            180
  CLUS_4                           15                             80
  CLUS_5                           10                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(10Q22.2) MUTATED       25     51     29
  AMP PEAK 22(10Q22.2) WILD-TYPE    119    158    142
D22V7, multiclass
        clus
vv       AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE
  CLUS_1                           25                            119
  CLUS_2                           51                            158
  CLUS_3                           29                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(10Q22.2) MUTATED        9     33     34     16     13
  AMP PEAK 22(10Q22.2) WILD-TYPE     38     89    128     85     79
D22V8, multiclass
        clus
vv       AMP PEAK 22(10Q22.2) MUTATED AMP PEAK 22(10Q22.2) WILD-TYPE
  CLUS_1                            9                             38
  CLUS_2                           33                             89
  CLUS_3                           34                            128
  CLUS_4                           16                             85
  CLUS_5                           13                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(10Q26.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(10Q26.13) MUTATED       48     42     29
  AMP PEAK 23(10Q26.13) WILD-TYPE    118    168    220
D23V1, multiclass
        clus
vv       AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE
  CLUS_1                            48                             118
  CLUS_2                            42                             168
  CLUS_3                            29                             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(10Q26.13) MUTATED       46     31     29
  AMP PEAK 23(10Q26.13) WILD-TYPE    202    126    143
D23V2, multiclass
        clus
vv       AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE
  CLUS_1                            46                             202
  CLUS_2                            31                             126
  CLUS_3                            29                             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(10Q26.13) MUTATED       46     19     20
  AMP PEAK 23(10Q26.13) WILD-TYPE    188    110     72
D23V3, multiclass
        clus
vv       AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE
  CLUS_1                            46                             188
  CLUS_2                            19                             110
  CLUS_3                            20                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(10Q26.13) MUTATED       26     25      7      6     21
  AMP PEAK 23(10Q26.13) WILD-TYPE     49    125     18     83     95
D23V4, multiclass
        clus
vv       AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE
  CLUS_1                            26                              49
  CLUS_2                            25                             125
  CLUS_3                             7                              18
  CLUS_4                             6                              83
  CLUS_5                            21                              95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(10Q26.13) MUTATED       20     65     33
  AMP PEAK 23(10Q26.13) WILD-TYPE    144    263     98
D23V5, multiclass
        clus
vv       AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE
  CLUS_1                            20                             144
  CLUS_2                            65                             263
  CLUS_3                            33                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(10Q26.13) MUTATED       37     18     42      8     13
  AMP PEAK 23(10Q26.13) WILD-TYPE     90     87    187     87     54
D23V6, multiclass
        clus
vv       AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE
  CLUS_1                            37                              90
  CLUS_2                            18                              87
  CLUS_3                            42                             187
  CLUS_4                             8                              87
  CLUS_5                            13                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(10Q26.13) MUTATED       20     47     32
  AMP PEAK 23(10Q26.13) WILD-TYPE    124    162    139
D23V7, multiclass
        clus
vv       AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE
  CLUS_1                            20                             124
  CLUS_2                            47                             162
  CLUS_3                            32                             139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(10Q26.13) MUTATED       10     33     30     20      6
  AMP PEAK 23(10Q26.13) WILD-TYPE     37     89    132     81     86
D23V8, multiclass
        clus
vv       AMP PEAK 23(10Q26.13) MUTATED AMP PEAK 23(10Q26.13) WILD-TYPE
  CLUS_1                            10                              37
  CLUS_2                            33                              89
  CLUS_3                            30                             132
  CLUS_4                            20                              81
  CLUS_5                             6                              86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11P13) MUTATED       55     60     23
  AMP PEAK 24(11P13) WILD-TYPE    111    150    226
D24V1, multiclass
        clus
vv       AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE
  CLUS_1                         55                          111
  CLUS_2                         60                          150
  CLUS_3                         23                          226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11P13) MUTATED       49     51     29
  AMP PEAK 24(11P13) WILD-TYPE    199    106    143
D24V2, multiclass
        clus
vv       AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE
  CLUS_1                         49                          199
  CLUS_2                         51                          106
  CLUS_3                         29                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11P13) MUTATED       42     35     20
  AMP PEAK 24(11P13) WILD-TYPE    192     94     72
D24V3, multiclass
        clus
vv       AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE
  CLUS_1                         42                          192
  CLUS_2                         35                           94
  CLUS_3                         20                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11P13) MUTATED       21     18      6     25     27
  AMP PEAK 24(11P13) WILD-TYPE     54    132     19     64     89
D24V4, multiclass
        clus
vv       AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE
  CLUS_1                         21                           54
  CLUS_2                         18                          132
  CLUS_3                          6                           19
  CLUS_4                         25                           64
  CLUS_5                         27                           89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11P13) MUTATED       45     65     26
  AMP PEAK 24(11P13) WILD-TYPE    119    263    105
D24V5, multiclass
        clus
vv       AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE
  CLUS_1                         45                          119
  CLUS_2                         65                          263
  CLUS_3                         26                          105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11P13) MUTATED       41     17     38     28     12
  AMP PEAK 24(11P13) WILD-TYPE     86     88    191     67     55
D24V6, multiclass
        clus
vv       AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE
  CLUS_1                         41                           86
  CLUS_2                         17                           88
  CLUS_3                         38                          191
  CLUS_4                         28                           67
  CLUS_5                         12                           55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11P13) MUTATED       42     42     33
  AMP PEAK 24(11P13) WILD-TYPE    102    167    138
D24V7, multiclass
        clus
vv       AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE
  CLUS_1                         42                          102
  CLUS_2                         42                          167
  CLUS_3                         33                          138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11P13) MUTATED       14     31     26     19     27
  AMP PEAK 24(11P13) WILD-TYPE     33     91    136     82     65
D24V8, multiclass
        clus
vv       AMP PEAK 24(11P13) MUTATED AMP PEAK 24(11P13) WILD-TYPE
  CLUS_1                         14                           33
  CLUS_2                         31                           91
  CLUS_3                         26                          136
  CLUS_4                         19                           82
  CLUS_5                         27                           65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11Q13.3) MUTATED       73    116     29
  AMP PEAK 25(11Q13.3) WILD-TYPE     93     94    220
D25V1, multiclass
        clus
vv       AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE
  CLUS_1                           73                             93
  CLUS_2                          116                             94
  CLUS_3                           29                            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11Q13.3) MUTATED       76     88     41
  AMP PEAK 25(11Q13.3) WILD-TYPE    172     69    131
D25V2, multiclass
        clus
vv       AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE
  CLUS_1                           76                            172
  CLUS_2                           88                             69
  CLUS_3                           41                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11Q13.3) MUTATED       69     83     10
  AMP PEAK 25(11Q13.3) WILD-TYPE    165     46     82
D25V3, multiclass
        clus
vv       AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE
  CLUS_1                           69                            165
  CLUS_2                           83                             46
  CLUS_3                           10                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(11Q13.3) MUTATED       33     35     11     63     20
  AMP PEAK 25(11Q13.3) WILD-TYPE     42    115     14     26     96
D25V4, multiclass
        clus
vv       AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE
  CLUS_1                           33                             42
  CLUS_2                           35                            115
  CLUS_3                           11                             14
  CLUS_4                           63                             26
  CLUS_5                           20                             96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11Q13.3) MUTATED       94    102     21
  AMP PEAK 25(11Q13.3) WILD-TYPE     70    226    110
D25V5, multiclass
        clus
vv       AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE
  CLUS_1                           94                             70
  CLUS_2                          102                            226
  CLUS_3                           21                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(11Q13.3) MUTATED       48     31     60     68     10
  AMP PEAK 25(11Q13.3) WILD-TYPE     79     74    169     27     57
D25V6, multiclass
        clus
vv       AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE
  CLUS_1                           48                             79
  CLUS_2                           31                             74
  CLUS_3                           60                            169
  CLUS_4                           68                             27
  CLUS_5                           10                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11Q13.3) MUTATED       83     66     43
  AMP PEAK 25(11Q13.3) WILD-TYPE     61    143    128
D25V7, multiclass
        clus
vv       AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE
  CLUS_1                           83                             61
  CLUS_2                           66                            143
  CLUS_3                           43                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(11Q13.3) MUTATED       17     47     42     20     66
  AMP PEAK 25(11Q13.3) WILD-TYPE     30     75    120     81     26
D25V8, multiclass
        clus
vv       AMP PEAK 25(11Q13.3) MUTATED AMP PEAK 25(11Q13.3) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                           47                             75
  CLUS_3                           42                            120
  CLUS_4                           20                             81
  CLUS_5                           66                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12P12.1) MUTATED       48    113     46
  AMP PEAK 26(12P12.1) WILD-TYPE    118     97    203
D26V1, multiclass
        clus
vv       AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE
  CLUS_1                           48                            118
  CLUS_2                          113                             97
  CLUS_3                           46                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12P12.1) MUTATED       73     79     46
  AMP PEAK 26(12P12.1) WILD-TYPE    175     78    126
D26V2, multiclass
        clus
vv       AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE
  CLUS_1                           73                            175
  CLUS_2                           79                             78
  CLUS_3                           46                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12P12.1) MUTATED       66     60     26
  AMP PEAK 26(12P12.1) WILD-TYPE    168     69     66
D26V3, multiclass
        clus
vv       AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE
  CLUS_1                           66                            168
  CLUS_2                           60                             69
  CLUS_3                           26                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12P12.1) MUTATED       25     39      8     47     33
  AMP PEAK 26(12P12.1) WILD-TYPE     50    111     17     42     83
D26V4, multiclass
        clus
vv       AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE
  CLUS_1                           25                             50
  CLUS_2                           39                            111
  CLUS_3                            8                             17
  CLUS_4                           47                             42
  CLUS_5                           33                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12P12.1) MUTATED       78     94     34
  AMP PEAK 26(12P12.1) WILD-TYPE     86    234     97
D26V5, multiclass
        clus
vv       AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE
  CLUS_1                           78                             86
  CLUS_2                           94                            234
  CLUS_3                           34                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12P12.1) MUTATED       44     24     79     47     12
  AMP PEAK 26(12P12.1) WILD-TYPE     83     81    150     48     55
D26V6, multiclass
        clus
vv       AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE
  CLUS_1                           44                             83
  CLUS_2                           24                             81
  CLUS_3                           79                            150
  CLUS_4                           47                             48
  CLUS_5                           12                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12P12.1) MUTATED       69     63     47
  AMP PEAK 26(12P12.1) WILD-TYPE     75    146    124
D26V7, multiclass
        clus
vv       AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE
  CLUS_1                           69                             75
  CLUS_2                           63                            146
  CLUS_3                           47                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12P12.1) MUTATED       17     42     48     25     47
  AMP PEAK 26(12P12.1) WILD-TYPE     30     80    114     76     45
D26V8, multiclass
        clus
vv       AMP PEAK 26(12P12.1) MUTATED AMP PEAK 26(12P12.1) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                           42                             80
  CLUS_3                           48                            114
  CLUS_4                           25                             76
  CLUS_5                           47                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(12Q15) MUTATED       35     86     40
  AMP PEAK 27(12Q15) WILD-TYPE    131    124    209
D27V1, multiclass
        clus
vv       AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE
  CLUS_1                         35                          131
  CLUS_2                         86                          124
  CLUS_3                         40                          209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(12Q15) MUTATED       56     54     40
  AMP PEAK 27(12Q15) WILD-TYPE    192    103    132
D27V2, multiclass
        clus
vv       AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE
  CLUS_1                         56                          192
  CLUS_2                         54                          103
  CLUS_3                         40                          132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(12Q15) MUTATED       55     36     26
  AMP PEAK 27(12Q15) WILD-TYPE    179     93     66
D27V3, multiclass
        clus
vv       AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE
  CLUS_1                         55                          179
  CLUS_2                         36                           93
  CLUS_3                         26                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(12Q15) MUTATED       20     36      5     25     31
  AMP PEAK 27(12Q15) WILD-TYPE     55    114     20     64     85
D27V4, multiclass
        clus
vv       AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE
  CLUS_1                         20                           55
  CLUS_2                         36                          114
  CLUS_3                          5                           20
  CLUS_4                         25                           64
  CLUS_5                         31                           85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(12Q15) MUTATED       53     77     30
  AMP PEAK 27(12Q15) WILD-TYPE    111    251    101
D27V5, multiclass
        clus
vv       AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE
  CLUS_1                         53                          111
  CLUS_2                         77                          251
  CLUS_3                         30                          101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(12Q15) MUTATED       39     20     65     26     10
  AMP PEAK 27(12Q15) WILD-TYPE     88     85    164     69     57
D27V6, multiclass
        clus
vv       AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE
  CLUS_1                         39                           88
  CLUS_2                         20                           85
  CLUS_3                         65                          164
  CLUS_4                         26                           69
  CLUS_5                         10                           57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(12Q15) MUTATED       45     53     32
  AMP PEAK 27(12Q15) WILD-TYPE     99    156    139
D27V7, multiclass
        clus
vv       AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE
  CLUS_1                         45                           99
  CLUS_2                         53                          156
  CLUS_3                         32                          139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(12Q15) MUTATED       14     28     42     19     27
  AMP PEAK 27(12Q15) WILD-TYPE     33     94    120     82     65
D27V8, multiclass
        clus
vv       AMP PEAK 27(12Q15) MUTATED AMP PEAK 27(12Q15) WILD-TYPE
  CLUS_1                         14                           33
  CLUS_2                         28                           94
  CLUS_3                         42                          120
  CLUS_4                         19                           82
  CLUS_5                         27                           65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(13Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q12.3) MUTATED      120     43     53
  AMP PEAK 28(13Q12.3) WILD-TYPE     46    167    196
D28V1, multiclass
        clus
vv       AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE
  CLUS_1                          120                             46
  CLUS_2                           43                            167
  CLUS_3                           53                            196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q12.3) MUTATED       95     54     48
  AMP PEAK 28(13Q12.3) WILD-TYPE    153    103    124
D28V2, multiclass
        clus
vv       AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE
  CLUS_1                           95                            153
  CLUS_2                           54                            103
  CLUS_3                           48                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q12.3) MUTATED      103     24     20
  AMP PEAK 28(13Q12.3) WILD-TYPE    131    105     72
D28V3, multiclass
        clus
vv       AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE
  CLUS_1                          103                            131
  CLUS_2                           24                            105
  CLUS_3                           20                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q12.3) MUTATED       36     62     12      9     28
  AMP PEAK 28(13Q12.3) WILD-TYPE     39     88     13     80     88
D28V4, multiclass
        clus
vv       AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE
  CLUS_1                           36                             39
  CLUS_2                           62                             88
  CLUS_3                           12                             13
  CLUS_4                            9                             80
  CLUS_5                           28                             88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q12.3) MUTATED       45    131     39
  AMP PEAK 28(13Q12.3) WILD-TYPE    119    197     92
D28V5, multiclass
        clus
vv       AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE
  CLUS_1                           45                            119
  CLUS_2                          131                            197
  CLUS_3                           39                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q12.3) MUTATED       72     42     73      9     19
  AMP PEAK 28(13Q12.3) WILD-TYPE     55     63    156     86     48
D28V6, multiclass
        clus
vv       AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE
  CLUS_1                           72                             55
  CLUS_2                           42                             63
  CLUS_3                           73                            156
  CLUS_4                            9                             86
  CLUS_5                           19                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q12.3) MUTATED       45     75     56
  AMP PEAK 28(13Q12.3) WILD-TYPE     99    134    115
D28V7, multiclass
        clus
vv       AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE
  CLUS_1                           45                             99
  CLUS_2                           75                            134
  CLUS_3                           56                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q12.3) MUTATED       28     47     53     39      9
  AMP PEAK 28(13Q12.3) WILD-TYPE     19     75    109     62     83
D28V8, multiclass
        clus
vv       AMP PEAK 28(13Q12.3) MUTATED AMP PEAK 28(13Q12.3) WILD-TYPE
  CLUS_1                           28                             19
  CLUS_2                           47                             75
  CLUS_3                           53                            109
  CLUS_4                           39                             62
  CLUS_5                            9                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(13Q22.1) MUTATED      131     55     57
  AMP PEAK 29(13Q22.1) WILD-TYPE     35    155    192
D29V1, multiclass
        clus
vv       AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE
  CLUS_1                          131                             35
  CLUS_2                           55                            155
  CLUS_3                           57                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(13Q22.1) MUTATED      101     72     48
  AMP PEAK 29(13Q22.1) WILD-TYPE    147     85    124
D29V2, multiclass
        clus
vv       AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE
  CLUS_1                          101                            147
  CLUS_2                           72                             85
  CLUS_3                           48                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(13Q22.1) MUTATED      104     43     18
  AMP PEAK 29(13Q22.1) WILD-TYPE    130     86     74
D29V3, multiclass
        clus
vv       AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE
  CLUS_1                          104                            130
  CLUS_2                           43                             86
  CLUS_3                           18                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(13Q22.1) MUTATED       50     56     12     17     30
  AMP PEAK 29(13Q22.1) WILD-TYPE     25     94     13     72     86
D29V4, multiclass
        clus
vv       AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE
  CLUS_1                           50                             25
  CLUS_2                           56                             94
  CLUS_3                           12                             13
  CLUS_4                           17                             72
  CLUS_5                           30                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(13Q22.1) MUTATED       66    135     40
  AMP PEAK 29(13Q22.1) WILD-TYPE     98    193     91
D29V5, multiclass
        clus
vv       AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE
  CLUS_1                           66                             98
  CLUS_2                          135                            193
  CLUS_3                           40                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(13Q22.1) MUTATED       80     45     77     20     19
  AMP PEAK 29(13Q22.1) WILD-TYPE     47     60    152     75     48
D29V6, multiclass
        clus
vv       AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE
  CLUS_1                           80                             47
  CLUS_2                           45                             60
  CLUS_3                           77                            152
  CLUS_4                           20                             75
  CLUS_5                           19                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(13Q22.1) MUTATED       59     87     55
  AMP PEAK 29(13Q22.1) WILD-TYPE     85    122    116
D29V7, multiclass
        clus
vv       AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE
  CLUS_1                           59                             85
  CLUS_2                           87                            122
  CLUS_3                           55                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(13Q22.1) MUTATED       36     53     58     35     19
  AMP PEAK 29(13Q22.1) WILD-TYPE     11     69    104     66     73
D29V8, multiclass
        clus
vv       AMP PEAK 29(13Q22.1) MUTATED AMP PEAK 29(13Q22.1) WILD-TYPE
  CLUS_1                           36                             11
  CLUS_2                           53                             69
  CLUS_3                           58                            104
  CLUS_4                           35                             66
  CLUS_5                           19                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(14Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(14Q13.3) MUTATED       34     69     10
  AMP PEAK 30(14Q13.3) WILD-TYPE    132    141    239
D30V1, multiclass
        clus
vv       AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE
  CLUS_1                           34                            132
  CLUS_2                           69                            141
  CLUS_3                           10                            239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(14Q13.3) MUTATED       34     53     20
  AMP PEAK 30(14Q13.3) WILD-TYPE    214    104    152
D30V2, multiclass
        clus
vv       AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE
  CLUS_1                           34                            214
  CLUS_2                           53                            104
  CLUS_3                           20                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(14Q13.3) MUTATED       29     45      8
  AMP PEAK 30(14Q13.3) WILD-TYPE    205     84     84
D30V3, multiclass
        clus
vv       AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE
  CLUS_1                           29                            205
  CLUS_2                           45                             84
  CLUS_3                            8                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(14Q13.3) MUTATED       13     20      3     39      7
  AMP PEAK 30(14Q13.3) WILD-TYPE     62    130     22     50    109
D30V4, multiclass
        clus
vv       AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE
  CLUS_1                           13                             62
  CLUS_2                           20                            130
  CLUS_3                            3                             22
  CLUS_4                           39                             50
  CLUS_5                            7                            109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(14Q13.3) MUTATED       54     45     13
  AMP PEAK 30(14Q13.3) WILD-TYPE    110    283    118
D30V5, multiclass
        clus
vv       AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE
  CLUS_1                           54                            110
  CLUS_2                           45                            283
  CLUS_3                           13                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(14Q13.3) MUTATED       22     16     24     41      9
  AMP PEAK 30(14Q13.3) WILD-TYPE    105     89    205     54     58
D30V6, multiclass
        clus
vv       AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE
  CLUS_1                           22                            105
  CLUS_2                           16                             89
  CLUS_3                           24                            205
  CLUS_4                           41                             54
  CLUS_5                            9                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(14Q13.3) MUTATED       46     27     26
  AMP PEAK 30(14Q13.3) WILD-TYPE     98    182    145
D30V7, multiclass
        clus
vv       AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE
  CLUS_1                           46                             98
  CLUS_2                           27                            182
  CLUS_3                           26                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(14Q13.3) MUTATED        8     24     16     10     41
  AMP PEAK 30(14Q13.3) WILD-TYPE     39     98    146     91     51
D30V8, multiclass
        clus
vv       AMP PEAK 30(14Q13.3) MUTATED AMP PEAK 30(14Q13.3) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           24                             98
  CLUS_3                           16                            146
  CLUS_4                           10                             91
  CLUS_5                           41                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(15Q26.1) MUTATED       67     75     26
  AMP PEAK 31(15Q26.1) WILD-TYPE     99    135    223
D31V1, multiclass
        clus
vv       AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE
  CLUS_1                           67                             99
  CLUS_2                           75                            135
  CLUS_3                           26                            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(15Q26.1) MUTATED       71     50     36
  AMP PEAK 31(15Q26.1) WILD-TYPE    177    107    136
D31V2, multiclass
        clus
vv       AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE
  CLUS_1                           71                            177
  CLUS_2                           50                            107
  CLUS_3                           36                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(15Q26.1) MUTATED       69     40     10
  AMP PEAK 31(15Q26.1) WILD-TYPE    165     89     82
D31V3, multiclass
        clus
vv       AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE
  CLUS_1                           69                            165
  CLUS_2                           40                             89
  CLUS_3                           10                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(15Q26.1) MUTATED       33     41     12     19     14
  AMP PEAK 31(15Q26.1) WILD-TYPE     42    109     13     70    102
D31V4, multiclass
        clus
vv       AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE
  CLUS_1                           33                             42
  CLUS_2                           41                            109
  CLUS_3                           12                             13
  CLUS_4                           19                             70
  CLUS_5                           14                            102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(15Q26.1) MUTATED       58     88     21
  AMP PEAK 31(15Q26.1) WILD-TYPE    106    240    110
D31V5, multiclass
        clus
vv       AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE
  CLUS_1                           58                            106
  CLUS_2                           88                            240
  CLUS_3                           21                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(15Q26.1) MUTATED       50     25     64     21      7
  AMP PEAK 31(15Q26.1) WILD-TYPE     77     80    165     74     60
D31V6, multiclass
        clus
vv       AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE
  CLUS_1                           50                             77
  CLUS_2                           25                             80
  CLUS_3                           64                            165
  CLUS_4                           21                             74
  CLUS_5                            7                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(15Q26.1) MUTATED       47     65     37
  AMP PEAK 31(15Q26.1) WILD-TYPE     97    144    134
D31V7, multiclass
        clus
vv       AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE
  CLUS_1                           47                             97
  CLUS_2                           65                            144
  CLUS_3                           37                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(15Q26.1) MUTATED       18     51     42     17     21
  AMP PEAK 31(15Q26.1) WILD-TYPE     29     71    120     84     71
D31V8, multiclass
        clus
vv       AMP PEAK 31(15Q26.1) MUTATED AMP PEAK 31(15Q26.1) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                           51                             71
  CLUS_3                           42                            120
  CLUS_4                           17                             84
  CLUS_5                           21                             71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(17Q12) MUTATED       98     87     37
  AMP PEAK 32(17Q12) WILD-TYPE     68    123    212
D32V1, multiclass
        clus
vv       AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE
  CLUS_1                         98                           68
  CLUS_2                         87                          123
  CLUS_3                         37                          212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(17Q12) MUTATED       95     71     42
  AMP PEAK 32(17Q12) WILD-TYPE    153     86    130
D32V2, multiclass
        clus
vv       AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE
  CLUS_1                         95                          153
  CLUS_2                         71                           86
  CLUS_3                         42                          130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(17Q12) MUTATED       91     44     19
  AMP PEAK 32(17Q12) WILD-TYPE    143     85     73
D32V3, multiclass
        clus
vv       AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE
  CLUS_1                         91                          143
  CLUS_2                         44                           85
  CLUS_3                         19                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(17Q12) MUTATED       38     49     11     27     29
  AMP PEAK 32(17Q12) WILD-TYPE     37    101     14     62     87
D32V4, multiclass
        clus
vv       AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE
  CLUS_1                         38                           37
  CLUS_2                         49                          101
  CLUS_3                         11                           14
  CLUS_4                         27                           62
  CLUS_5                         29                           87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(17Q12) MUTATED       68    117     35
  AMP PEAK 32(17Q12) WILD-TYPE     96    211     96
D32V5, multiclass
        clus
vv       AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE
  CLUS_1                         68                           96
  CLUS_2                        117                          211
  CLUS_3                         35                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(17Q12) MUTATED       63     35     80     29     13
  AMP PEAK 32(17Q12) WILD-TYPE     64     70    149     66     54
D32V6, multiclass
        clus
vv       AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE
  CLUS_1                         63                           64
  CLUS_2                         35                           70
  CLUS_3                         80                          149
  CLUS_4                         29                           66
  CLUS_5                         13                           54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(17Q12) MUTATED       54     83     49
  AMP PEAK 32(17Q12) WILD-TYPE     90    126    122
D32V7, multiclass
        clus
vv       AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE
  CLUS_1                         54                           90
  CLUS_2                         83                          126
  CLUS_3                         49                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(17Q12) MUTATED       23     58     56     21     28
  AMP PEAK 32(17Q12) WILD-TYPE     24     64    106     80     64
D32V8, multiclass
        clus
vv       AMP PEAK 32(17Q12) MUTATED AMP PEAK 32(17Q12) WILD-TYPE
  CLUS_1                         23                           24
  CLUS_2                         58                           64
  CLUS_3                         56                          106
  CLUS_4                         21                           80
  CLUS_5                         28                           64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(18P11.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(18P11.32) MUTATED       55     90     33
  AMP PEAK 33(18P11.32) WILD-TYPE    111    120    216
D33V1, multiclass
        clus
vv       AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE
  CLUS_1                            55                             111
  CLUS_2                            90                             120
  CLUS_3                            33                             216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(18P11.32) MUTATED       49     78     41
  AMP PEAK 33(18P11.32) WILD-TYPE    199     79    131
D33V2, multiclass
        clus
vv       AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE
  CLUS_1                            49                             199
  CLUS_2                            78                              79
  CLUS_3                            41                             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(18P11.32) MUTATED       62     50     15
  AMP PEAK 33(18P11.32) WILD-TYPE    172     79     77
D33V3, multiclass
        clus
vv       AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE
  CLUS_1                            62                             172
  CLUS_2                            50                              79
  CLUS_3                            15                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(18P11.32) MUTATED       28     40      6     38     15
  AMP PEAK 33(18P11.32) WILD-TYPE     47    110     19     51    101
D33V4, multiclass
        clus
vv       AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE
  CLUS_1                            28                              47
  CLUS_2                            40                             110
  CLUS_3                             6                              19
  CLUS_4                            38                              51
  CLUS_5                            15                             101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(18P11.32) MUTATED       68     86     22
  AMP PEAK 33(18P11.32) WILD-TYPE     96    242    109
D33V5, multiclass
        clus
vv       AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE
  CLUS_1                            68                              96
  CLUS_2                            86                             242
  CLUS_3                            22                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(18P11.32) MUTATED       51     26     50     42      7
  AMP PEAK 33(18P11.32) WILD-TYPE     76     79    179     53     60
D33V6, multiclass
        clus
vv       AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE
  CLUS_1                            51                              76
  CLUS_2                            26                              79
  CLUS_3                            50                             179
  CLUS_4                            42                              53
  CLUS_5                             7                              60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(18P11.32) MUTATED       57     61     34
  AMP PEAK 33(18P11.32) WILD-TYPE     87    148    137
D33V7, multiclass
        clus
vv       AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE
  CLUS_1                            57                              87
  CLUS_2                            61                             148
  CLUS_3                            34                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(18P11.32) MUTATED       17     40     37     18     40
  AMP PEAK 33(18P11.32) WILD-TYPE     30     82    125     83     52
D33V8, multiclass
        clus
vv       AMP PEAK 33(18P11.32) MUTATED AMP PEAK 33(18P11.32) WILD-TYPE
  CLUS_1                            17                              30
  CLUS_2                            40                              82
  CLUS_3                            37                             125
  CLUS_4                            18                              83
  CLUS_5                            40                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = AMP PEAK 34(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(18Q11.2) MUTATED       76     77     45
  AMP PEAK 34(18Q11.2) WILD-TYPE     90    133    204
D34V1, multiclass
        clus
vv       AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE
  CLUS_1                           76                             90
  CLUS_2                           77                            133
  CLUS_3                           45                            204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(18Q11.2) MUTATED       77     59     45
  AMP PEAK 34(18Q11.2) WILD-TYPE    171     98    127
D34V2, multiclass
        clus
vv       AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE
  CLUS_1                           77                            171
  CLUS_2                           59                             98
  CLUS_3                           45                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(18Q11.2) MUTATED       78     37     18
  AMP PEAK 34(18Q11.2) WILD-TYPE    156     92     74
D34V3, multiclass
        clus
vv       AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE
  CLUS_1                           78                            156
  CLUS_2                           37                             92
  CLUS_3                           18                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(18Q11.2) MUTATED       30     52     11     19     21
  AMP PEAK 34(18Q11.2) WILD-TYPE     45     98     14     70     95
D34V4, multiclass
        clus
vv       AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE
  CLUS_1                           30                             45
  CLUS_2                           52                             98
  CLUS_3                           11                             14
  CLUS_4                           19                             70
  CLUS_5                           21                             95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(18Q11.2) MUTATED       50    115     33
  AMP PEAK 34(18Q11.2) WILD-TYPE    114    213     98
D34V5, multiclass
        clus
vv       AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE
  CLUS_1                           50                            114
  CLUS_2                          115                            213
  CLUS_3                           33                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(18Q11.2) MUTATED       60     34     69     21     14
  AMP PEAK 34(18Q11.2) WILD-TYPE     67     71    160     74     53
D34V6, multiclass
        clus
vv       AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE
  CLUS_1                           60                             67
  CLUS_2                           34                             71
  CLUS_3                           69                            160
  CLUS_4                           21                             74
  CLUS_5                           14                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(18Q11.2) MUTATED       41     77     44
  AMP PEAK 34(18Q11.2) WILD-TYPE    103    132    127
D34V7, multiclass
        clus
vv       AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE
  CLUS_1                           41                            103
  CLUS_2                           77                            132
  CLUS_3                           44                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(18Q11.2) MUTATED       18     51     48     25     20
  AMP PEAK 34(18Q11.2) WILD-TYPE     29     71    114     76     72
D34V8, multiclass
        clus
vv       AMP PEAK 34(18Q11.2) MUTATED AMP PEAK 34(18Q11.2) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                           51                             71
  CLUS_3                           48                            114
  CLUS_4                           25                             76
  CLUS_5                           20                             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 35(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(19P13.2) MUTATED       28     39     12
  AMP PEAK 35(19P13.2) WILD-TYPE    138    171    237
D35V1, multiclass
        clus
vv       AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE
  CLUS_1                           28                            138
  CLUS_2                           39                            171
  CLUS_3                           12                            237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(19P13.2) MUTATED       31     32     12
  AMP PEAK 35(19P13.2) WILD-TYPE    217    125    160
D35V2, multiclass
        clus
vv       AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE
  CLUS_1                           31                            217
  CLUS_2                           32                            125
  CLUS_3                           12                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(19P13.2) MUTATED       27     25      9
  AMP PEAK 35(19P13.2) WILD-TYPE    207    104     83
D35V3, multiclass
        clus
vv       AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE
  CLUS_1                           27                            207
  CLUS_2                           25                            104
  CLUS_3                            9                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(19P13.2) MUTATED       11     16      4     18     12
  AMP PEAK 35(19P13.2) WILD-TYPE     64    134     21     71    104
D35V4, multiclass
        clus
vv       AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                           16                            134
  CLUS_3                            4                             21
  CLUS_4                           18                             71
  CLUS_5                           12                            104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(19P13.2) MUTATED       24     41     12
  AMP PEAK 35(19P13.2) WILD-TYPE    140    287    119
D35V5, multiclass
        clus
vv       AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE
  CLUS_1                           24                            140
  CLUS_2                           41                            287
  CLUS_3                           12                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(19P13.2) MUTATED       13     13     25     20      6
  AMP PEAK 35(19P13.2) WILD-TYPE    114     92    204     75     61
D35V6, multiclass
        clus
vv       AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE
  CLUS_1                           13                            114
  CLUS_2                           13                             92
  CLUS_3                           25                            204
  CLUS_4                           20                             75
  CLUS_5                            6                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(19P13.2) MUTATED       24     28     13
  AMP PEAK 35(19P13.2) WILD-TYPE    120    181    158
D35V7, multiclass
        clus
vv       AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE
  CLUS_1                           24                            120
  CLUS_2                           28                            181
  CLUS_3                           13                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(19P13.2) MUTATED        4     19     18      6     18
  AMP PEAK 35(19P13.2) WILD-TYPE     43    103    144     95     74
D35V8, multiclass
        clus
vv       AMP PEAK 35(19P13.2) MUTATED AMP PEAK 35(19P13.2) WILD-TYPE
  CLUS_1                            4                             43
  CLUS_2                           19                            103
  CLUS_3                           18                            144
  CLUS_4                            6                             95
  CLUS_5                           18                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 36(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(19Q12) MUTATED       86     75     24
  AMP PEAK 36(19Q12) WILD-TYPE     80    135    225
D36V1, multiclass
        clus
vv       AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE
  CLUS_1                         86                           80
  CLUS_2                         75                          135
  CLUS_3                         24                          225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(19Q12) MUTATED       63     69     41
  AMP PEAK 36(19Q12) WILD-TYPE    185     88    131
D36V2, multiclass
        clus
vv       AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE
  CLUS_1                         63                          185
  CLUS_2                         69                           88
  CLUS_3                         41                          131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(19Q12) MUTATED       79     32     23
  AMP PEAK 36(19Q12) WILD-TYPE    155     97     69
D36V3, multiclass
        clus
vv       AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE
  CLUS_1                         79                          155
  CLUS_2                         32                           97
  CLUS_3                         23                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(19Q12) MUTATED       44     36      7     21     26
  AMP PEAK 36(19Q12) WILD-TYPE     31    114     18     68     90
D36V4, multiclass
        clus
vv       AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE
  CLUS_1                         44                           31
  CLUS_2                         36                          114
  CLUS_3                          7                           18
  CLUS_4                         21                           68
  CLUS_5                         26                           90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(19Q12) MUTATED       63     88     33
  AMP PEAK 36(19Q12) WILD-TYPE    101    240     98
D36V5, multiclass
        clus
vv       AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE
  CLUS_1                         63                          101
  CLUS_2                         88                          240
  CLUS_3                         33                           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(19Q12) MUTATED       82     22     45     23     12
  AMP PEAK 36(19Q12) WILD-TYPE     45     83    184     72     55
D36V6, multiclass
        clus
vv       AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE
  CLUS_1                         82                           45
  CLUS_2                         22                           83
  CLUS_3                         45                          184
  CLUS_4                         23                           72
  CLUS_5                         12                           55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(19Q12) MUTATED       53     61     44
  AMP PEAK 36(19Q12) WILD-TYPE     91    148    127
D36V7, multiclass
        clus
vv       AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE
  CLUS_1                         53                           91
  CLUS_2                         61                          148
  CLUS_3                         44                          127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(19Q12) MUTATED       33     40     38     25     22
  AMP PEAK 36(19Q12) WILD-TYPE     14     82    124     76     70
D36V8, multiclass
        clus
vv       AMP PEAK 36(19Q12) MUTATED AMP PEAK 36(19Q12) WILD-TYPE
  CLUS_1                         33                           14
  CLUS_2                         40                           82
  CLUS_3                         38                          124
  CLUS_4                         25                           76
  CLUS_5                         22                           70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = AMP PEAK 37(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(19Q13.43) MUTATED       62     71     31
  AMP PEAK 37(19Q13.43) WILD-TYPE    104    139    218
D37V1, multiclass
        clus
vv       AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            62                             104
  CLUS_2                            71                             139
  CLUS_3                            31                             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(19Q13.43) MUTATED       70     49     34
  AMP PEAK 37(19Q13.43) WILD-TYPE    178    108    138
D37V2, multiclass
        clus
vv       AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            70                             178
  CLUS_2                            49                             108
  CLUS_3                            34                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(19Q13.43) MUTATED       66     34     20
  AMP PEAK 37(19Q13.43) WILD-TYPE    168     95     72
D37V3, multiclass
        clus
vv       AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            66                             168
  CLUS_2                            34                              95
  CLUS_3                            20                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(19Q13.43) MUTATED       23     37     10     23     27
  AMP PEAK 37(19Q13.43) WILD-TYPE     52    113     15     66     89
D37V4, multiclass
        clus
vv       AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            23                              52
  CLUS_2                            37                             113
  CLUS_3                            10                              15
  CLUS_4                            23                              66
  CLUS_5                            27                              89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(19Q13.43) MUTATED       47     88     28
  AMP PEAK 37(19Q13.43) WILD-TYPE    117    240    103
D37V5, multiclass
        clus
vv       AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            47                             117
  CLUS_2                            88                             240
  CLUS_3                            28                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(19Q13.43) MUTATED       51     24     52     24     12
  AMP PEAK 37(19Q13.43) WILD-TYPE     76     81    177     71     55
D37V6, multiclass
        clus
vv       AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            51                              76
  CLUS_2                            24                              81
  CLUS_3                            52                             177
  CLUS_4                            24                              71
  CLUS_5                            12                              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(19Q13.43) MUTATED       49     58     30
  AMP PEAK 37(19Q13.43) WILD-TYPE     95    151    141
D37V7, multiclass
        clus
vv       AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            49                              95
  CLUS_2                            58                             151
  CLUS_3                            30                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(19Q13.43) MUTATED       23     37     37     18     22
  AMP PEAK 37(19Q13.43) WILD-TYPE     24     85    125     83     70
D37V8, multiclass
        clus
vv       AMP PEAK 37(19Q13.43) MUTATED AMP PEAK 37(19Q13.43) WILD-TYPE
  CLUS_1                            23                              24
  CLUS_2                            37                              85
  CLUS_3                            37                             125
  CLUS_4                            18                              83
  CLUS_5                            22                              70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = AMP PEAK 38(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(20Q13.2) MUTATED      153    154    109
  AMP PEAK 38(20Q13.2) WILD-TYPE     13     56    140
D38V1, multiclass
        clus
vv       AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE
  CLUS_1                          153                             13
  CLUS_2                          154                             56
  CLUS_3                          109                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(20Q13.2) MUTATED      169    112    103
  AMP PEAK 38(20Q13.2) WILD-TYPE     79     45     69
D38V2, multiclass
        clus
vv       AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE
  CLUS_1                          169                             79
  CLUS_2                          112                             45
  CLUS_3                          103                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(20Q13.2) MUTATED      171     78     50
  AMP PEAK 38(20Q13.2) WILD-TYPE     63     51     42
D38V3, multiclass
        clus
vv       AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE
  CLUS_1                          171                             63
  CLUS_2                           78                             51
  CLUS_3                           50                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(20Q13.2) MUTATED       68     98     18     46     69
  AMP PEAK 38(20Q13.2) WILD-TYPE      7     52      7     43     47
D38V4, multiclass
        clus
vv       AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE
  CLUS_1                           68                              7
  CLUS_2                           98                             52
  CLUS_3                           18                              7
  CLUS_4                           46                             43
  CLUS_5                           69                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(20Q13.2) MUTATED      111    227     76
  AMP PEAK 38(20Q13.2) WILD-TYPE     53    101     55
D38V5, multiclass
        clus
vv       AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE
  CLUS_1                          111                             53
  CLUS_2                          227                            101
  CLUS_3                           76                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(20Q13.2) MUTATED      119     62    147     50     36
  AMP PEAK 38(20Q13.2) WILD-TYPE      8     43     82     45     31
D38V6, multiclass
        clus
vv       AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE
  CLUS_1                          119                              8
  CLUS_2                           62                             43
  CLUS_3                          147                             82
  CLUS_4                           50                             45
  CLUS_5                           36                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(20Q13.2) MUTATED       97    144    104
  AMP PEAK 38(20Q13.2) WILD-TYPE     47     65     67
D38V7, multiclass
        clus
vv       AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE
  CLUS_1                           97                             47
  CLUS_2                          144                             65
  CLUS_3                          104                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(20Q13.2) MUTATED       45     96     93     62     49
  AMP PEAK 38(20Q13.2) WILD-TYPE      2     26     69     39     43
D38V8, multiclass
        clus
vv       AMP PEAK 38(20Q13.2) MUTATED AMP PEAK 38(20Q13.2) WILD-TYPE
  CLUS_1                           45                              2
  CLUS_2                           96                             26
  CLUS_3                           93                             69
  CLUS_4                           62                             39
  CLUS_5                           49                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = AMP PEAK 39(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(XQ28) MUTATED       47     78     29
  AMP PEAK 39(XQ28) WILD-TYPE    119    132    220
D39V1, multiclass
        clus
vv       AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE
  CLUS_1                        47                         119
  CLUS_2                        78                         132
  CLUS_3                        29                         220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(XQ28) MUTATED       65     55     24
  AMP PEAK 39(XQ28) WILD-TYPE    183    102    148
D39V2, multiclass
        clus
vv       AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE
  CLUS_1                        65                         183
  CLUS_2                        55                         102
  CLUS_3                        24                         148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(XQ28) MUTATED       53     56      8
  AMP PEAK 39(XQ28) WILD-TYPE    181     73     84
D39V3, multiclass
        clus
vv       AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE
  CLUS_1                        53                         181
  CLUS_2                        56                          73
  CLUS_3                         8                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(XQ28) MUTATED       22     31      8     42     14
  AMP PEAK 39(XQ28) WILD-TYPE     53    119     17     47    102
D39V4, multiclass
        clus
vv       AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE
  CLUS_1                        22                          53
  CLUS_2                        31                         119
  CLUS_3                         8                          17
  CLUS_4                        42                          47
  CLUS_5                        14                         102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(XQ28) MUTATED       62     76     15
  AMP PEAK 39(XQ28) WILD-TYPE    102    252    116
D39V5, multiclass
        clus
vv       AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE
  CLUS_1                        62                         102
  CLUS_2                        76                         252
  CLUS_3                        15                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(XQ28) MUTATED       29     28     42     45      9
  AMP PEAK 39(XQ28) WILD-TYPE     98     77    187     50     58
D39V6, multiclass
        clus
vv       AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE
  CLUS_1                        29                          98
  CLUS_2                        28                          77
  CLUS_3                        42                         187
  CLUS_4                        45                          50
  CLUS_5                         9                          58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(XQ28) MUTATED       51     47     33
  AMP PEAK 39(XQ28) WILD-TYPE     93    162    138
D39V7, multiclass
        clus
vv       AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE
  CLUS_1                        51                          93
  CLUS_2                        47                         162
  CLUS_3                        33                         138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(XQ28) MUTATED        6     38     29     14     44
  AMP PEAK 39(XQ28) WILD-TYPE     41     84    133     87     48
D39V8, multiclass
        clus
vv       AMP PEAK 39(XQ28) MUTATED AMP PEAK 39(XQ28) WILD-TYPE
  CLUS_1                         6                          41
  CLUS_2                        38                          84
  CLUS_3                        29                         133
  CLUS_4                        14                          87
  CLUS_5                        44                          48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       90     98     22
  DEL PEAK  1(1P36.11) WILD-TYPE     76    112    227
D40V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           90                             76
  CLUS_2                           98                            112
  CLUS_3                           22                            227
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       85     68     39
  DEL PEAK  1(1P36.11) WILD-TYPE    163     89    133
D40V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           85                            163
  CLUS_2                           68                             89
  CLUS_3                           39                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       91     47     13
  DEL PEAK  1(1P36.11) WILD-TYPE    143     82     79
D40V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           91                            143
  CLUS_2                           47                             82
  CLUS_3                           13                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       36     54      9     30     22
  DEL PEAK  1(1P36.11) WILD-TYPE     39     96     16     59     94
D40V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           36                             39
  CLUS_2                           54                             96
  CLUS_3                            9                             16
  CLUS_4                           30                             59
  CLUS_5                           22                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       64    120     25
  DEL PEAK  1(1P36.11) WILD-TYPE    100    208    106
D40V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           64                            100
  CLUS_2                          120                            208
  CLUS_3                           25                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       64     35     69     30     11
  DEL PEAK  1(1P36.11) WILD-TYPE     63     70    160     65     56
D40V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           64                             63
  CLUS_2                           35                             70
  CLUS_3                           69                            160
  CLUS_4                           30                             65
  CLUS_5                           11                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       61     76     42
  DEL PEAK  1(1P36.11) WILD-TYPE     83    133    129
D40V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           61                             83
  CLUS_2                           76                            133
  CLUS_3                           42                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       24     55     44     25     31
  DEL PEAK  1(1P36.11) WILD-TYPE     23     67    118     76     61
D40V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                           55                             67
  CLUS_3                           44                            118
  CLUS_4                           25                             76
  CLUS_5                           31                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       68     77     11
  DEL PEAK  2(1P13.2) WILD-TYPE     98    133    238
D41V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          68                            98
  CLUS_2                          77                           133
  CLUS_3                          11                           238
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       64     68     15
  DEL PEAK  2(1P13.2) WILD-TYPE    184     89    157
D41V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          64                           184
  CLUS_2                          68                            89
  CLUS_3                          15                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       58     45     10
  DEL PEAK  2(1P13.2) WILD-TYPE    176     84     82
D41V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          58                           176
  CLUS_2                          45                            84
  CLUS_3                          10                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       24     36      9     31     13
  DEL PEAK  2(1P13.2) WILD-TYPE     51    114     16     58    103
D41V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          24                            51
  CLUS_2                          36                           114
  CLUS_3                           9                            16
  CLUS_4                          31                            58
  CLUS_5                          13                           103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       48     87     20
  DEL PEAK  2(1P13.2) WILD-TYPE    116    241    111
D41V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          48                           116
  CLUS_2                          87                           241
  CLUS_3                          20                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       40     21     54     33      7
  DEL PEAK  2(1P13.2) WILD-TYPE     87     84    175     62     60
D41V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          40                            87
  CLUS_2                          21                            84
  CLUS_3                          54                           175
  CLUS_4                          33                            62
  CLUS_5                           7                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       50     54     32
  DEL PEAK  2(1P13.2) WILD-TYPE     94    155    139
D41V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          50                            94
  CLUS_2                          54                           155
  CLUS_3                          32                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       14     36     35     19     32
  DEL PEAK  2(1P13.2) WILD-TYPE     33     86    127     82     60
D41V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                          36                            86
  CLUS_3                          35                           127
  CLUS_4                          19                            82
  CLUS_5                          32                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       19     17     10
  DEL PEAK  3(1Q44) WILD-TYPE    147    193    239
D42V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        19                         147
  CLUS_2                        17                         193
  CLUS_3                        10                         239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       21     15      6
  DEL PEAK  3(1Q44) WILD-TYPE    227    142    166
D42V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        21                         227
  CLUS_2                        15                         142
  CLUS_3                         6                         166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       23     11      3
  DEL PEAK  3(1Q44) WILD-TYPE    211    118     89
D42V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        23                         211
  CLUS_2                        11                         118
  CLUS_3                         3                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED       12     12      3      6      4
  DEL PEAK  3(1Q44) WILD-TYPE     63    138     22     83    112
D42V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        12                          63
  CLUS_2                        12                         138
  CLUS_3                         3                          22
  CLUS_4                         6                          83
  CLUS_5                         4                         112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       12     32      2
  DEL PEAK  3(1Q44) WILD-TYPE    152    296    129
D42V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        12                         152
  CLUS_2                        32                         296
  CLUS_3                         2                         129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED       14      5     21      6      0
  DEL PEAK  3(1Q44) WILD-TYPE    113    100    208     89     67
D42V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        14                         113
  CLUS_2                         5                         100
  CLUS_3                        21                         208
  CLUS_4                         6                          89
  CLUS_5                         0                          67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       12     17      9
  DEL PEAK  3(1Q44) WILD-TYPE    132    192    162
D42V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        12                         132
  CLUS_2                        17                         192
  CLUS_3                         9                         162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        6      8     14      4      6
  DEL PEAK  3(1Q44) WILD-TYPE     41    114    148     97     86
D42V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         6                          41
  CLUS_2                         8                         114
  CLUS_3                        14                         148
  CLUS_4                         4                          97
  CLUS_5                         6                          86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK  4(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       14     19     10
  DEL PEAK  4(1Q44) WILD-TYPE    152    191    239
D43V1, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        14                         152
  CLUS_2                        19                         191
  CLUS_3                        10                         239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       21     17      5
  DEL PEAK  4(1Q44) WILD-TYPE    227    140    167
D43V2, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        21                         227
  CLUS_2                        17                         140
  CLUS_3                         5                         167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       16     12      6
  DEL PEAK  4(1Q44) WILD-TYPE    218    117     86
D43V3, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        16                         218
  CLUS_2                        12                         117
  CLUS_3                         6                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q44) MUTATED        8      9      3      8      6
  DEL PEAK  4(1Q44) WILD-TYPE     67    141     22     81    110
D43V4, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         8                          67
  CLUS_2                         9                         141
  CLUS_3                         3                          22
  CLUS_4                         8                          81
  CLUS_5                         6                         110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       12     26      5
  DEL PEAK  4(1Q44) WILD-TYPE    152    302    126
D43V5, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        12                         152
  CLUS_2                        26                         302
  CLUS_3                         5                         126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q44) MUTATED        9      4     21      8      1
  DEL PEAK  4(1Q44) WILD-TYPE    118    101    208     87     66
D43V6, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         9                         118
  CLUS_2                         4                         101
  CLUS_3                        21                         208
  CLUS_4                         8                          87
  CLUS_5                         1                          66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q44) MUTATED       11     15     13
  DEL PEAK  4(1Q44) WILD-TYPE    133    194    158
D43V7, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        11                         133
  CLUS_2                        15                         194
  CLUS_3                        13                         158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q44) MUTATED        2      9     14      6      8
  DEL PEAK  4(1Q44) WILD-TYPE     45    113    148     95     84
D43V8, multiclass
        clus
vv       DEL PEAK  4(1Q44) MUTATED DEL PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         2                          45
  CLUS_2                         9                         113
  CLUS_3                        14                         148
  CLUS_4                         6                          95
  CLUS_5                         8                          84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       34     74     18
  DEL PEAK  5(2Q22.1) WILD-TYPE    132    136    231
D44V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          34                           132
  CLUS_2                          74                           136
  CLUS_3                          18                           231
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       31     68     20
  DEL PEAK  5(2Q22.1) WILD-TYPE    217     89    152
D44V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          31                           217
  CLUS_2                          68                            89
  CLUS_3                          20                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       29     55      6
  DEL PEAK  5(2Q22.1) WILD-TYPE    205     74     86
D44V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          29                           205
  CLUS_2                          55                            74
  CLUS_3                           6                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED       16     18      6     43      7
  DEL PEAK  5(2Q22.1) WILD-TYPE     59    132     19     46    109
D44V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          16                            59
  CLUS_2                          18                           132
  CLUS_3                           6                            19
  CLUS_4                          43                            46
  CLUS_5                           7                           109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       60     54     12
  DEL PEAK  5(2Q22.1) WILD-TYPE    104    274    119
D44V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          60                           104
  CLUS_2                          54                           274
  CLUS_3                          12                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED       31      7     37     46      5
  DEL PEAK  5(2Q22.1) WILD-TYPE     96     98    192     49     62
D44V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          31                            96
  CLUS_2                           7                            98
  CLUS_3                          37                           192
  CLUS_4                          46                            49
  CLUS_5                           5                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       58     31     20
  DEL PEAK  5(2Q22.1) WILD-TYPE     86    178    151
D44V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          58                            86
  CLUS_2                          31                           178
  CLUS_3                          20                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED       10     25     17     11     46
  DEL PEAK  5(2Q22.1) WILD-TYPE     37     97    145     90     46
D44V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          10                            37
  CLUS_2                          25                            97
  CLUS_3                          17                           145
  CLUS_4                          11                            90
  CLUS_5                          46                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK  6(2Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED       34     33     20
  DEL PEAK  6(2Q32.1) WILD-TYPE    132    177    229
D45V1, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                          34                           132
  CLUS_2                          33                           177
  CLUS_3                          20                           229
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED       34     31     14
  DEL PEAK  6(2Q32.1) WILD-TYPE    214    126    158
D45V2, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                          34                           214
  CLUS_2                          31                           126
  CLUS_3                          14                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED       29     22      6
  DEL PEAK  6(2Q32.1) WILD-TYPE    205    107     86
D45V3, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                          29                           205
  CLUS_2                          22                           107
  CLUS_3                           6                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q32.1) MUTATED       14     16      4     14      9
  DEL PEAK  6(2Q32.1) WILD-TYPE     61    134     21     75    107
D45V4, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                          14                            61
  CLUS_2                          16                           134
  CLUS_3                           4                            21
  CLUS_4                          14                            75
  CLUS_5                           9                           107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED       30     42     15
  DEL PEAK  6(2Q32.1) WILD-TYPE    134    286    116
D45V5, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                          30                           134
  CLUS_2                          42                           286
  CLUS_3                          15                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q32.1) MUTATED       28      9     25     15     10
  DEL PEAK  6(2Q32.1) WILD-TYPE     99     96    204     80     57
D45V6, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                          28                            99
  CLUS_2                           9                            96
  CLUS_3                          25                           204
  CLUS_4                          15                            80
  CLUS_5                          10                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED       26     27     18
  DEL PEAK  6(2Q32.1) WILD-TYPE    118    182    153
D45V7, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                          26                           118
  CLUS_2                          27                           182
  CLUS_3                          18                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q32.1) MUTATED        8     20     16     12     15
  DEL PEAK  6(2Q32.1) WILD-TYPE     39    102    146     89     77
D45V8, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           8                            39
  CLUS_2                          20                           102
  CLUS_3                          16                           146
  CLUS_4                          12                            89
  CLUS_5                          15                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK  7(2Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q33.3) MUTATED       31     39     15
  DEL PEAK  7(2Q33.3) WILD-TYPE    135    171    234
D46V1, multiclass
        clus
vv       DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE
  CLUS_1                          31                           135
  CLUS_2                          39                           171
  CLUS_3                          15                           234
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q33.3) MUTATED       29     39     14
  DEL PEAK  7(2Q33.3) WILD-TYPE    219    118    158
D46V2, multiclass
        clus
vv       DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE
  CLUS_1                          29                           219
  CLUS_2                          39                           118
  CLUS_3                          14                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q33.3) MUTATED       27     32      6
  DEL PEAK  7(2Q33.3) WILD-TYPE    207     97     86
D46V3, multiclass
        clus
vv       DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE
  CLUS_1                          27                           207
  CLUS_2                          32                            97
  CLUS_3                           6                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q33.3) MUTATED       15     16      3     23      8
  DEL PEAK  7(2Q33.3) WILD-TYPE     60    134     22     66    108
D46V4, multiclass
        clus
vv       DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE
  CLUS_1                          15                            60
  CLUS_2                          16                           134
  CLUS_3                           3                            22
  CLUS_4                          23                            66
  CLUS_5                           8                           108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q33.3) MUTATED       38     36     10
  DEL PEAK  7(2Q33.3) WILD-TYPE    126    292    121
D46V5, multiclass
        clus
vv       DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE
  CLUS_1                          38                           126
  CLUS_2                          36                           292
  CLUS_3                          10                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q33.3) MUTATED       22      9     23     25      5
  DEL PEAK  7(2Q33.3) WILD-TYPE    105     96    206     70     62
D46V6, multiclass
        clus
vv       DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE
  CLUS_1                          22                           105
  CLUS_2                           9                            96
  CLUS_3                          23                           206
  CLUS_4                          25                            70
  CLUS_5                           5                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q33.3) MUTATED       32     19     20
  DEL PEAK  7(2Q33.3) WILD-TYPE    112    190    151
D46V7, multiclass
        clus
vv       DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE
  CLUS_1                          32                           112
  CLUS_2                          19                           190
  CLUS_3                          20                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q33.3) MUTATED        6     16     15      9     25
  DEL PEAK  7(2Q33.3) WILD-TYPE     41    106    147     92     67
D46V8, multiclass
        clus
vv       DEL PEAK  7(2Q33.3) MUTATED DEL PEAK  7(2Q33.3) WILD-TYPE
  CLUS_1                           6                            41
  CLUS_2                          16                           106
  CLUS_3                          15                           147
  CLUS_4                           9                            92
  CLUS_5                          25                            67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK  8(2Q37.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.2) MUTATED       41     63     18
  DEL PEAK  8(2Q37.2) WILD-TYPE    125    147    231
D47V1, multiclass
        clus
vv       DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                          41                           125
  CLUS_2                          63                           147
  CLUS_3                          18                           231
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.2) MUTATED       39     55     23
  DEL PEAK  8(2Q37.2) WILD-TYPE    209    102    149
D47V2, multiclass
        clus
vv       DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                          39                           209
  CLUS_2                          55                           102
  CLUS_3                          23                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.2) MUTATED       42     41      9
  DEL PEAK  8(2Q37.2) WILD-TYPE    192     88     83
D47V3, multiclass
        clus
vv       DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                          42                           192
  CLUS_2                          41                            88
  CLUS_3                           9                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(2Q37.2) MUTATED       21     22      3     33     13
  DEL PEAK  8(2Q37.2) WILD-TYPE     54    128     22     56    103
D47V4, multiclass
        clus
vv       DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                          21                            54
  CLUS_2                          22                           128
  CLUS_3                           3                            22
  CLUS_4                          33                            56
  CLUS_5                          13                           103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.2) MUTATED       49     57     15
  DEL PEAK  8(2Q37.2) WILD-TYPE    115    271    116
D47V5, multiclass
        clus
vv       DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                          49                           115
  CLUS_2                          57                           271
  CLUS_3                          15                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(2Q37.2) MUTATED       32     16     32     36      5
  DEL PEAK  8(2Q37.2) WILD-TYPE     95     89    197     59     62
D47V6, multiclass
        clus
vv       DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                          32                            95
  CLUS_2                          16                            89
  CLUS_3                          32                           197
  CLUS_4                          36                            59
  CLUS_5                           5                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.2) MUTATED       41     38     28
  DEL PEAK  8(2Q37.2) WILD-TYPE    103    171    143
D47V7, multiclass
        clus
vv       DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                          41                           103
  CLUS_2                          38                           171
  CLUS_3                          28                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(2Q37.2) MUTATED       12     26     21     13     35
  DEL PEAK  8(2Q37.2) WILD-TYPE     35     96    141     88     57
D47V8, multiclass
        clus
vv       DEL PEAK  8(2Q37.2) MUTATED DEL PEAK  8(2Q37.2) WILD-TYPE
  CLUS_1                          12                            35
  CLUS_2                          26                            96
  CLUS_3                          21                           141
  CLUS_4                          13                            88
  CLUS_5                          35                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK  9(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P26.2) MUTATED       91    129     30
  DEL PEAK  9(3P26.2) WILD-TYPE     75     81    219
D48V1, multiclass
        clus
vv       DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE
  CLUS_1                          91                            75
  CLUS_2                         129                            81
  CLUS_3                          30                           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P26.2) MUTATED       86    104     45
  DEL PEAK  9(3P26.2) WILD-TYPE    162     53    127
D48V2, multiclass
        clus
vv       DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE
  CLUS_1                          86                           162
  CLUS_2                         104                            53
  CLUS_3                          45                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P26.2) MUTATED       84     82     17
  DEL PEAK  9(3P26.2) WILD-TYPE    150     47     75
D48V3, multiclass
        clus
vv       DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE
  CLUS_1                          84                           150
  CLUS_2                          82                            47
  CLUS_3                          17                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P26.2) MUTATED       33     49     12     69     20
  DEL PEAK  9(3P26.2) WILD-TYPE     42    101     13     20     96
D48V4, multiclass
        clus
vv       DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE
  CLUS_1                          33                            42
  CLUS_2                          49                           101
  CLUS_3                          12                            13
  CLUS_4                          69                            20
  CLUS_5                          20                            96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P26.2) MUTATED      100    118     31
  DEL PEAK  9(3P26.2) WILD-TYPE     64    210    100
D48V5, multiclass
        clus
vv       DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE
  CLUS_1                         100                            64
  CLUS_2                         118                           210
  CLUS_3                          31                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P26.2) MUTATED       64     30     71     74     10
  DEL PEAK  9(3P26.2) WILD-TYPE     63     75    158     21     57
D48V6, multiclass
        clus
vv       DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE
  CLUS_1                          64                            63
  CLUS_2                          30                            75
  CLUS_3                          71                           158
  CLUS_4                          74                            21
  CLUS_5                          10                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P26.2) MUTATED       94     69     54
  DEL PEAK  9(3P26.2) WILD-TYPE     50    140    117
D48V7, multiclass
        clus
vv       DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE
  CLUS_1                          94                            50
  CLUS_2                          69                           140
  CLUS_3                          54                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P26.2) MUTATED       23     49     45     27     73
  DEL PEAK  9(3P26.2) WILD-TYPE     24     73    117     74     19
D48V8, multiclass
        clus
vv       DEL PEAK  9(3P26.2) MUTATED DEL PEAK  9(3P26.2) WILD-TYPE
  CLUS_1                          23                            24
  CLUS_2                          49                            73
  CLUS_3                          45                           117
  CLUS_4                          27                            74
  CLUS_5                          73                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 10(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P14.2) MUTATED       95    142     45
  DEL PEAK 10(3P14.2) WILD-TYPE     71     68    204
D49V1, multiclass
        clus
vv       DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE
  CLUS_1                          95                            71
  CLUS_2                         142                            68
  CLUS_3                          45                           204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P14.2) MUTATED      107    117     45
  DEL PEAK 10(3P14.2) WILD-TYPE    141     40    127
D49V2, multiclass
        clus
vv       DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE
  CLUS_1                         107                           141
  CLUS_2                         117                            40
  CLUS_3                          45                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P14.2) MUTATED      100     93     18
  DEL PEAK 10(3P14.2) WILD-TYPE    134     36     74
D49V3, multiclass
        clus
vv       DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE
  CLUS_1                         100                           134
  CLUS_2                          93                            36
  CLUS_3                          18                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3P14.2) MUTATED       40     58     13     77     23
  DEL PEAK 10(3P14.2) WILD-TYPE     35     92     12     12     93
D49V4, multiclass
        clus
vv       DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE
  CLUS_1                          40                            35
  CLUS_2                          58                            92
  CLUS_3                          13                            12
  CLUS_4                          77                            12
  CLUS_5                          23                            93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P14.2) MUTATED      112    133     37
  DEL PEAK 10(3P14.2) WILD-TYPE     52    195     94
D49V5, multiclass
        clus
vv       DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE
  CLUS_1                         112                            52
  CLUS_2                         133                           195
  CLUS_3                          37                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3P14.2) MUTATED       69     38     81     83     11
  DEL PEAK 10(3P14.2) WILD-TYPE     58     67    148     12     56
D49V6, multiclass
        clus
vv       DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE
  CLUS_1                          69                            58
  CLUS_2                          38                            67
  CLUS_3                          81                           148
  CLUS_4                          83                            12
  CLUS_5                          11                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P14.2) MUTATED      103     86     58
  DEL PEAK 10(3P14.2) WILD-TYPE     41    123    113
D49V7, multiclass
        clus
vv       DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE
  CLUS_1                         103                            41
  CLUS_2                          86                           123
  CLUS_3                          58                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3P14.2) MUTATED       23     60     55     27     82
  DEL PEAK 10(3P14.2) WILD-TYPE     24     62    107     74     10
D49V8, multiclass
        clus
vv       DEL PEAK 10(3P14.2) MUTATED DEL PEAK 10(3P14.2) WILD-TYPE
  CLUS_1                          23                            24
  CLUS_2                          60                            62
  CLUS_3                          55                           107
  CLUS_4                          27                            74
  CLUS_5                          82                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 11(3Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q11.1) MUTATED       53     33     12
  DEL PEAK 11(3Q11.1) WILD-TYPE    113    177    237
D50V1, multiclass
        clus
vv       DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE
  CLUS_1                          53                           113
  CLUS_2                          33                           177
  CLUS_3                          12                           237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q11.1) MUTATED       46     36     10
  DEL PEAK 11(3Q11.1) WILD-TYPE    202    121    162
D50V2, multiclass
        clus
vv       DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE
  CLUS_1                          46                           202
  CLUS_2                          36                           121
  CLUS_3                          10                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q11.1) MUTATED       38     22     11
  DEL PEAK 11(3Q11.1) WILD-TYPE    196    107     81
D50V3, multiclass
        clus
vv       DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE
  CLUS_1                          38                           196
  CLUS_2                          22                           107
  CLUS_3                          11                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(3Q11.1) MUTATED       25     18      6     14      8
  DEL PEAK 11(3Q11.1) WILD-TYPE     50    132     19     75    108
D50V4, multiclass
        clus
vv       DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE
  CLUS_1                          25                            50
  CLUS_2                          18                           132
  CLUS_3                           6                            19
  CLUS_4                          14                            75
  CLUS_5                           8                           108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q11.1) MUTATED       26     56     16
  DEL PEAK 11(3Q11.1) WILD-TYPE    138    272    115
D50V5, multiclass
        clus
vv       DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE
  CLUS_1                          26                           138
  CLUS_2                          56                           272
  CLUS_3                          16                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(3Q11.1) MUTATED       33     17     27     16      5
  DEL PEAK 11(3Q11.1) WILD-TYPE     94     88    202     79     62
D50V6, multiclass
        clus
vv       DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE
  CLUS_1                          33                            94
  CLUS_2                          17                            88
  CLUS_3                          27                           202
  CLUS_4                          16                            79
  CLUS_5                           5                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q11.1) MUTATED       30     33     22
  DEL PEAK 11(3Q11.1) WILD-TYPE    114    176    149
D50V7, multiclass
        clus
vv       DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE
  CLUS_1                          30                           114
  CLUS_2                          33                           176
  CLUS_3                          22                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(3Q11.1) MUTATED       14     21     23     11     16
  DEL PEAK 11(3Q11.1) WILD-TYPE     33    101    139     90     76
D50V8, multiclass
        clus
vv       DEL PEAK 11(3Q11.1) MUTATED DEL PEAK 11(3Q11.1) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                          21                           101
  CLUS_3                          23                           139
  CLUS_4                          11                            90
  CLUS_5                          16                            76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 12(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q26.31) MUTATED       47      7      9
  DEL PEAK 12(3Q26.31) WILD-TYPE    119    203    240
D51V1, multiclass
        clus
vv       DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE
  CLUS_1                           47                            119
  CLUS_2                            7                            203
  CLUS_3                            9                            240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q26.31) MUTATED       33     18      8
  DEL PEAK 12(3Q26.31) WILD-TYPE    215    139    164
D51V2, multiclass
        clus
vv       DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE
  CLUS_1                           33                            215
  CLUS_2                           18                            139
  CLUS_3                            8                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q26.31) MUTATED       28      7      6
  DEL PEAK 12(3Q26.31) WILD-TYPE    206    122     86
D51V3, multiclass
        clus
vv       DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE
  CLUS_1                           28                            206
  CLUS_2                            7                            122
  CLUS_3                            6                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(3Q26.31) MUTATED       16     14      5      1      5
  DEL PEAK 12(3Q26.31) WILD-TYPE     59    136     20     88    111
D51V4, multiclass
        clus
vv       DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE
  CLUS_1                           16                             59
  CLUS_2                           14                            136
  CLUS_3                            5                             20
  CLUS_4                            1                             88
  CLUS_5                            5                            111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q26.31) MUTATED       13     40     10
  DEL PEAK 12(3Q26.31) WILD-TYPE    151    288    121
D51V5, multiclass
        clus
vv       DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE
  CLUS_1                           13                            151
  CLUS_2                           40                            288
  CLUS_3                           10                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(3Q26.31) MUTATED       26     11     21      2      3
  DEL PEAK 12(3Q26.31) WILD-TYPE    101     94    208     93     64
D51V6, multiclass
        clus
vv       DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE
  CLUS_1                           26                            101
  CLUS_2                           11                             94
  CLUS_3                           21                            208
  CLUS_4                            2                             93
  CLUS_5                            3                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q26.31) MUTATED       15     27     11
  DEL PEAK 12(3Q26.31) WILD-TYPE    129    182    160
D51V7, multiclass
        clus
vv       DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE
  CLUS_1                           15                            129
  CLUS_2                           27                            182
  CLUS_3                           11                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(3Q26.31) MUTATED       15     16     11      9      2
  DEL PEAK 12(3Q26.31) WILD-TYPE     32    106    151     92     90
D51V8, multiclass
        clus
vv       DEL PEAK 12(3Q26.31) MUTATED DEL PEAK 12(3Q26.31) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                           16                            106
  CLUS_3                           11                            151
  CLUS_4                            9                             92
  CLUS_5                            2                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 13(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED      104    120     47
  DEL PEAK 13(4P16.3) WILD-TYPE     62     90    202
D52V1, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                         104                            62
  CLUS_2                         120                            90
  CLUS_3                          47                           202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED       98     95     59
  DEL PEAK 13(4P16.3) WILD-TYPE    150     62    113
D52V2, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          98                           150
  CLUS_2                          95                            62
  CLUS_3                          59                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED       94     72     34
  DEL PEAK 13(4P16.3) WILD-TYPE    140     57     58
D52V3, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          94                           140
  CLUS_2                          72                            57
  CLUS_3                          34                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4P16.3) MUTATED       46     50     12     52     40
  DEL PEAK 13(4P16.3) WILD-TYPE     29    100     13     37     76
D52V4, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          46                            29
  CLUS_2                          50                           100
  CLUS_3                          12                            13
  CLUS_4                          52                            37
  CLUS_5                          40                            76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED       97    127     47
  DEL PEAK 13(4P16.3) WILD-TYPE     67    201     84
D52V5, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          97                            67
  CLUS_2                         127                           201
  CLUS_3                          47                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4P16.3) MUTATED       79     40     72     54     26
  DEL PEAK 13(4P16.3) WILD-TYPE     48     65    157     41     41
D52V6, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          79                            48
  CLUS_2                          40                            65
  CLUS_3                          72                           157
  CLUS_4                          54                            41
  CLUS_5                          26                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED       93     73     69
  DEL PEAK 13(4P16.3) WILD-TYPE     51    136    102
D52V7, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          93                            51
  CLUS_2                          73                           136
  CLUS_3                          69                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4P16.3) MUTATED       37     54     49     42     53
  DEL PEAK 13(4P16.3) WILD-TYPE     10     68    113     59     39
D52V8, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          37                            10
  CLUS_2                          54                            68
  CLUS_3                          49                           113
  CLUS_4                          42                            59
  CLUS_5                          53                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 14(4P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4P15.2) MUTATED       98    126     45
  DEL PEAK 14(4P15.2) WILD-TYPE     68     84    204
D53V1, multiclass
        clus
vv       DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE
  CLUS_1                          98                            68
  CLUS_2                         126                            84
  CLUS_3                          45                           204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4P15.2) MUTATED       94     96     59
  DEL PEAK 14(4P15.2) WILD-TYPE    154     61    113
D53V2, multiclass
        clus
vv       DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE
  CLUS_1                          94                           154
  CLUS_2                          96                            61
  CLUS_3                          59                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4P15.2) MUTATED       92     73     34
  DEL PEAK 14(4P15.2) WILD-TYPE    142     56     58
D53V3, multiclass
        clus
vv       DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE
  CLUS_1                          92                           142
  CLUS_2                          73                            56
  CLUS_3                          34                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(4P15.2) MUTATED       45     47     12     54     41
  DEL PEAK 14(4P15.2) WILD-TYPE     30    103     13     35     75
D53V4, multiclass
        clus
vv       DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE
  CLUS_1                          45                            30
  CLUS_2                          47                           103
  CLUS_3                          12                            13
  CLUS_4                          54                            35
  CLUS_5                          41                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4P15.2) MUTATED       99    125     45
  DEL PEAK 14(4P15.2) WILD-TYPE     65    203     86
D53V5, multiclass
        clus
vv       DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE
  CLUS_1                          99                            65
  CLUS_2                         125                           203
  CLUS_3                          45                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(4P15.2) MUTATED       81     37     69     55     27
  DEL PEAK 14(4P15.2) WILD-TYPE     46     68    160     40     40
D53V6, multiclass
        clus
vv       DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE
  CLUS_1                          81                            46
  CLUS_2                          37                            68
  CLUS_3                          69                           160
  CLUS_4                          55                            40
  CLUS_5                          27                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4P15.2) MUTATED       93     71     65
  DEL PEAK 14(4P15.2) WILD-TYPE     51    138    106
D53V7, multiclass
        clus
vv       DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE
  CLUS_1                          93                            51
  CLUS_2                          71                           138
  CLUS_3                          65                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(4P15.2) MUTATED       34     54     47     39     55
  DEL PEAK 14(4P15.2) WILD-TYPE     13     68    115     62     37
D53V8, multiclass
        clus
vv       DEL PEAK 14(4P15.2) MUTATED DEL PEAK 14(4P15.2) WILD-TYPE
  CLUS_1                          34                            13
  CLUS_2                          54                            68
  CLUS_3                          47                           115
  CLUS_4                          39                            62
  CLUS_5                          55                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 15(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q22.1) MUTATED      111    138     49
  DEL PEAK 15(4Q22.1) WILD-TYPE     55     72    200
D54V1, multiclass
        clus
vv       DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE
  CLUS_1                         111                            55
  CLUS_2                         138                            72
  CLUS_3                          49                           200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q22.1) MUTATED      122     89     66
  DEL PEAK 15(4Q22.1) WILD-TYPE    126     68    106
D54V2, multiclass
        clus
vv       DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE
  CLUS_1                         122                           126
  CLUS_2                          89                            68
  CLUS_3                          66                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q22.1) MUTATED      122     66     31
  DEL PEAK 15(4Q22.1) WILD-TYPE    112     63     61
D54V3, multiclass
        clus
vv       DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE
  CLUS_1                         122                           112
  CLUS_2                          66                            63
  CLUS_3                          31                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(4Q22.1) MUTATED       54     67     13     44     41
  DEL PEAK 15(4Q22.1) WILD-TYPE     21     83     12     45     75
D54V4, multiclass
        clus
vv       DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE
  CLUS_1                          54                            21
  CLUS_2                          67                            83
  CLUS_3                          13                            12
  CLUS_4                          44                            45
  CLUS_5                          41                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q22.1) MUTATED       89    162     46
  DEL PEAK 15(4Q22.1) WILD-TYPE     75    166     85
D54V5, multiclass
        clus
vv       DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE
  CLUS_1                          89                            75
  CLUS_2                         162                           166
  CLUS_3                          46                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(4Q22.1) MUTATED       80     50     96     47     24
  DEL PEAK 15(4Q22.1) WILD-TYPE     47     55    133     48     43
D54V6, multiclass
        clus
vv       DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE
  CLUS_1                          80                            47
  CLUS_2                          50                            55
  CLUS_3                          96                           133
  CLUS_4                          47                            48
  CLUS_5                          24                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q22.1) MUTATED       84     94     73
  DEL PEAK 15(4Q22.1) WILD-TYPE     60    115     98
D54V7, multiclass
        clus
vv       DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE
  CLUS_1                          84                            60
  CLUS_2                          94                           115
  CLUS_3                          73                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(4Q22.1) MUTATED       28     68     67     41     47
  DEL PEAK 15(4Q22.1) WILD-TYPE     19     54     95     60     45
D54V8, multiclass
        clus
vv       DEL PEAK 15(4Q22.1) MUTATED DEL PEAK 15(4Q22.1) WILD-TYPE
  CLUS_1                          28                            19
  CLUS_2                          68                            54
  CLUS_3                          67                            95
  CLUS_4                          41                            60
  CLUS_5                          47                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 16(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(4Q34.3) MUTATED      115    136     49
  DEL PEAK 16(4Q34.3) WILD-TYPE     51     74    200
D55V1, multiclass
        clus
vv       DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE
  CLUS_1                         115                            51
  CLUS_2                         136                            74
  CLUS_3                          49                           200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(4Q34.3) MUTATED      122     92     67
  DEL PEAK 16(4Q34.3) WILD-TYPE    126     65    105
D55V2, multiclass
        clus
vv       DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE
  CLUS_1                         122                           126
  CLUS_2                          92                            65
  CLUS_3                          67                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(4Q34.3) MUTATED      113     62     38
  DEL PEAK 16(4Q34.3) WILD-TYPE    121     67     54
D55V3, multiclass
        clus
vv       DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE
  CLUS_1                         113                           121
  CLUS_2                          62                            67
  CLUS_3                          38                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(4Q34.3) MUTATED       54     65     12     40     42
  DEL PEAK 16(4Q34.3) WILD-TYPE     21     85     13     49     74
D55V4, multiclass
        clus
vv       DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE
  CLUS_1                          54                            21
  CLUS_2                          65                            85
  CLUS_3                          12                            13
  CLUS_4                          40                            49
  CLUS_5                          42                            74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(4Q34.3) MUTATED       89    161     50
  DEL PEAK 16(4Q34.3) WILD-TYPE     75    167     81
D55V5, multiclass
        clus
vv       DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE
  CLUS_1                          89                            75
  CLUS_2                         161                           167
  CLUS_3                          50                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(4Q34.3) MUTATED       89     48     98     42     23
  DEL PEAK 16(4Q34.3) WILD-TYPE     38     57    131     53     44
D55V6, multiclass
        clus
vv       DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE
  CLUS_1                          89                            38
  CLUS_2                          48                            57
  CLUS_3                          98                           131
  CLUS_4                          42                            53
  CLUS_5                          23                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(4Q34.3) MUTATED       81    101     77
  DEL PEAK 16(4Q34.3) WILD-TYPE     63    108     94
D55V7, multiclass
        clus
vv       DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE
  CLUS_1                          81                            63
  CLUS_2                         101                           108
  CLUS_3                          77                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(4Q34.3) MUTATED       36     73     64     44     42
  DEL PEAK 16(4Q34.3) WILD-TYPE     11     49     98     57     50
D55V8, multiclass
        clus
vv       DEL PEAK 16(4Q34.3) MUTATED DEL PEAK 16(4Q34.3) WILD-TYPE
  CLUS_1                          36                            11
  CLUS_2                          73                            49
  CLUS_3                          64                            98
  CLUS_4                          44                            57
  CLUS_5                          42                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 17(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q12.1) MUTATED      115    132     35
  DEL PEAK 17(5Q12.1) WILD-TYPE     51     78    214
D56V1, multiclass
        clus
vv       DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE
  CLUS_1                         115                            51
  CLUS_2                         132                            78
  CLUS_3                          35                           214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q12.1) MUTATED      105    115     48
  DEL PEAK 17(5Q12.1) WILD-TYPE    143     42    124
D56V2, multiclass
        clus
vv       DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE
  CLUS_1                         105                           143
  CLUS_2                         115                            42
  CLUS_3                          48                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q12.1) MUTATED      107     77     19
  DEL PEAK 17(5Q12.1) WILD-TYPE    127     52     73
D56V3, multiclass
        clus
vv       DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE
  CLUS_1                         107                           127
  CLUS_2                          77                            52
  CLUS_3                          19                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(5Q12.1) MUTATED       53     61     17     50     22
  DEL PEAK 17(5Q12.1) WILD-TYPE     22     89      8     39     94
D56V4, multiclass
        clus
vv       DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE
  CLUS_1                          53                            22
  CLUS_2                          61                            89
  CLUS_3                          17                             8
  CLUS_4                          50                            39
  CLUS_5                          22                            94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q12.1) MUTATED      105    144     32
  DEL PEAK 17(5Q12.1) WILD-TYPE     59    184     99
D56V5, multiclass
        clus
vv       DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE
  CLUS_1                         105                            59
  CLUS_2                         144                           184
  CLUS_3                          32                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(5Q12.1) MUTATED       97     42     78     54     10
  DEL PEAK 17(5Q12.1) WILD-TYPE     30     63    151     41     57
D56V6, multiclass
        clus
vv       DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE
  CLUS_1                          97                            30
  CLUS_2                          42                            63
  CLUS_3                          78                           151
  CLUS_4                          54                            41
  CLUS_5                          10                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q12.1) MUTATED       95     95     60
  DEL PEAK 17(5Q12.1) WILD-TYPE     49    114    111
D56V7, multiclass
        clus
vv       DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE
  CLUS_1                          95                            49
  CLUS_2                          95                           114
  CLUS_3                          60                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(5Q12.1) MUTATED       38     64     63     31     54
  DEL PEAK 17(5Q12.1) WILD-TYPE      9     58     99     70     38
D56V8, multiclass
        clus
vv       DEL PEAK 17(5Q12.1) MUTATED DEL PEAK 17(5Q12.1) WILD-TYPE
  CLUS_1                          38                             9
  CLUS_2                          64                            58
  CLUS_3                          63                            99
  CLUS_4                          31                            70
  CLUS_5                          54                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 18(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       67     89     32
  DEL PEAK 18(6P25.3) WILD-TYPE     99    121    217
D57V1, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          67                            99
  CLUS_2                          89                           121
  CLUS_3                          32                           217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       81     65     35
  DEL PEAK 18(6P25.3) WILD-TYPE    167     92    137
D57V2, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          81                           167
  CLUS_2                          65                            92
  CLUS_3                          35                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       68     48     14
  DEL PEAK 18(6P25.3) WILD-TYPE    166     81     78
D57V3, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          68                           166
  CLUS_2                          48                            81
  CLUS_3                          14                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6P25.3) MUTATED       30     41     10     32     17
  DEL PEAK 18(6P25.3) WILD-TYPE     45    109     15     57     99
D57V4, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          30                            45
  CLUS_2                          41                           109
  CLUS_3                          10                            15
  CLUS_4                          32                            57
  CLUS_5                          17                            99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       59    107     21
  DEL PEAK 18(6P25.3) WILD-TYPE    105    221    110
D57V5, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          59                           105
  CLUS_2                         107                           221
  CLUS_3                          21                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6P25.3) MUTATED       53     30     64     33      7
  DEL PEAK 18(6P25.3) WILD-TYPE     74     75    165     62     60
D57V6, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          53                            74
  CLUS_2                          30                            75
  CLUS_3                          64                           165
  CLUS_4                          33                            62
  CLUS_5                           7                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6P25.3) MUTATED       54     69     42
  DEL PEAK 18(6P25.3) WILD-TYPE     90    140    129
D57V7, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          54                            90
  CLUS_2                          69                           140
  CLUS_3                          42                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6P25.3) MUTATED       14     57     39     23     32
  DEL PEAK 18(6P25.3) WILD-TYPE     33     65    123     78     60
D57V8, multiclass
        clus
vv       DEL PEAK 18(6P25.3) MUTATED DEL PEAK 18(6P25.3) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                          57                            65
  CLUS_3                          39                           123
  CLUS_4                          23                            78
  CLUS_5                          32                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 19(6Q16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q16.3) MUTATED       41     83     23
  DEL PEAK 19(6Q16.3) WILD-TYPE    125    127    226
D58V1, multiclass
        clus
vv       DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE
  CLUS_1                          41                           125
  CLUS_2                          83                           127
  CLUS_3                          23                           226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q16.3) MUTATED       53     50     35
  DEL PEAK 19(6Q16.3) WILD-TYPE    195    107    137
D58V2, multiclass
        clus
vv       DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE
  CLUS_1                          53                           195
  CLUS_2                          50                           107
  CLUS_3                          35                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q16.3) MUTATED       54     41     13
  DEL PEAK 19(6Q16.3) WILD-TYPE    180     88     79
D58V3, multiclass
        clus
vv       DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE
  CLUS_1                          54                           180
  CLUS_2                          41                            88
  CLUS_3                          13                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q16.3) MUTATED       21     35      5     31     16
  DEL PEAK 19(6Q16.3) WILD-TYPE     54    115     20     58    100
D58V4, multiclass
        clus
vv       DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE
  CLUS_1                          21                            54
  CLUS_2                          35                           115
  CLUS_3                           5                            20
  CLUS_4                          31                            58
  CLUS_5                          16                           100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q16.3) MUTATED       46     77     24
  DEL PEAK 19(6Q16.3) WILD-TYPE    118    251    107
D58V5, multiclass
        clus
vv       DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE
  CLUS_1                          46                           118
  CLUS_2                          77                           251
  CLUS_3                          24                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q16.3) MUTATED       34     25     49     32      7
  DEL PEAK 19(6Q16.3) WILD-TYPE     93     80    180     63     60
D58V6, multiclass
        clus
vv       DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE
  CLUS_1                          34                            93
  CLUS_2                          25                            80
  CLUS_3                          49                           180
  CLUS_4                          32                            63
  CLUS_5                           7                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q16.3) MUTATED       44     50     34
  DEL PEAK 19(6Q16.3) WILD-TYPE    100    159    137
D58V7, multiclass
        clus
vv       DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE
  CLUS_1                          44                           100
  CLUS_2                          50                           159
  CLUS_3                          34                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q16.3) MUTATED       10     30     39     17     32
  DEL PEAK 19(6Q16.3) WILD-TYPE     37     92    123     84     60
D58V8, multiclass
        clus
vv       DEL PEAK 19(6Q16.3) MUTATED DEL PEAK 19(6Q16.3) WILD-TYPE
  CLUS_1                          10                            37
  CLUS_2                          30                            92
  CLUS_3                          39                           123
  CLUS_4                          17                            84
  CLUS_5                          32                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 20(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(6Q26) MUTATED       46     80     26
  DEL PEAK 20(6Q26) WILD-TYPE    120    130    223
D59V1, multiclass
        clus
vv       DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE
  CLUS_1                        46                         120
  CLUS_2                        80                         130
  CLUS_3                        26                         223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(6Q26) MUTATED       53     49     39
  DEL PEAK 20(6Q26) WILD-TYPE    195    108    133
D59V2, multiclass
        clus
vv       DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE
  CLUS_1                        53                         195
  CLUS_2                        49                         108
  CLUS_3                        39                         133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(6Q26) MUTATED       54     40     14
  DEL PEAK 20(6Q26) WILD-TYPE    180     89     78
D59V3, multiclass
        clus
vv       DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE
  CLUS_1                        54                         180
  CLUS_2                        40                          89
  CLUS_3                        14                          78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(6Q26) MUTATED       24     32      4     28     20
  DEL PEAK 20(6Q26) WILD-TYPE     51    118     21     61     96
D59V4, multiclass
        clus
vv       DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE
  CLUS_1                        24                          51
  CLUS_2                        32                         118
  CLUS_3                         4                          21
  CLUS_4                        28                          61
  CLUS_5                        20                          96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(6Q26) MUTATED       49     83     20
  DEL PEAK 20(6Q26) WILD-TYPE    115    245    111
D59V5, multiclass
        clus
vv       DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE
  CLUS_1                        49                         115
  CLUS_2                        83                         245
  CLUS_3                        20                         111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(6Q26) MUTATED       35     27     52     30      8
  DEL PEAK 20(6Q26) WILD-TYPE     92     78    177     65     59
D59V6, multiclass
        clus
vv       DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE
  CLUS_1                        35                          92
  CLUS_2                        27                          78
  CLUS_3                        52                         177
  CLUS_4                        30                          65
  CLUS_5                         8                          59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(6Q26) MUTATED       46     46     33
  DEL PEAK 20(6Q26) WILD-TYPE     98    163    138
D59V7, multiclass
        clus
vv       DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE
  CLUS_1                        46                          98
  CLUS_2                        46                         163
  CLUS_3                        33                         138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(6Q26) MUTATED       11     23     46     16     29
  DEL PEAK 20(6Q26) WILD-TYPE     36     99    116     85     63
D59V8, multiclass
        clus
vv       DEL PEAK 20(6Q26) MUTATED DEL PEAK 20(6Q26) WILD-TYPE
  CLUS_1                        11                          36
  CLUS_2                        23                          99
  CLUS_3                        46                         116
  CLUS_4                        16                          85
  CLUS_5                        29                          63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 21(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q31.1) MUTATED       44     65     18
  DEL PEAK 21(7Q31.1) WILD-TYPE    122    145    231
D60V1, multiclass
        clus
vv       DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE
  CLUS_1                          44                           122
  CLUS_2                          65                           145
  CLUS_3                          18                           231
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q31.1) MUTATED       55     42     22
  DEL PEAK 21(7Q31.1) WILD-TYPE    193    115    150
D60V2, multiclass
        clus
vv       DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE
  CLUS_1                          55                           193
  CLUS_2                          42                           115
  CLUS_3                          22                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q31.1) MUTATED       54     35      9
  DEL PEAK 21(7Q31.1) WILD-TYPE    180     94     83
D60V3, multiclass
        clus
vv       DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE
  CLUS_1                          54                           180
  CLUS_2                          35                            94
  CLUS_3                           9                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q31.1) MUTATED       22     31      7     25     13
  DEL PEAK 21(7Q31.1) WILD-TYPE     53    119     18     64    103
D60V4, multiclass
        clus
vv       DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE
  CLUS_1                          22                            53
  CLUS_2                          31                           119
  CLUS_3                           7                            18
  CLUS_4                          25                            64
  CLUS_5                          13                           103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q31.1) MUTATED       46     62     18
  DEL PEAK 21(7Q31.1) WILD-TYPE    118    266    113
D60V5, multiclass
        clus
vv       DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE
  CLUS_1                          46                           118
  CLUS_2                          62                           266
  CLUS_3                          18                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q31.1) MUTATED       38     19     37     24      8
  DEL PEAK 21(7Q31.1) WILD-TYPE     89     86    192     71     59
D60V6, multiclass
        clus
vv       DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE
  CLUS_1                          38                            89
  CLUS_2                          19                            86
  CLUS_3                          37                           192
  CLUS_4                          24                            71
  CLUS_5                           8                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q31.1) MUTATED       37     47     29
  DEL PEAK 21(7Q31.1) WILD-TYPE    107    162    142
D60V7, multiclass
        clus
vv       DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE
  CLUS_1                          37                           107
  CLUS_2                          47                           162
  CLUS_3                          29                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q31.1) MUTATED       12     36     27     14     24
  DEL PEAK 21(7Q31.1) WILD-TYPE     35     86    135     87     68
D60V8, multiclass
        clus
vv       DEL PEAK 21(7Q31.1) MUTATED DEL PEAK 21(7Q31.1) WILD-TYPE
  CLUS_1                          12                            35
  CLUS_2                          36                            86
  CLUS_3                          27                           135
  CLUS_4                          14                            87
  CLUS_5                          24                            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 22(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(7Q36.3) MUTATED       60     86     17
  DEL PEAK 22(7Q36.3) WILD-TYPE    106    124    232
D61V1, multiclass
        clus
vv       DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE
  CLUS_1                          60                           106
  CLUS_2                          86                           124
  CLUS_3                          17                           232
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(7Q36.3) MUTATED       57     63     35
  DEL PEAK 22(7Q36.3) WILD-TYPE    191     94    137
D61V2, multiclass
        clus
vv       DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE
  CLUS_1                          57                           191
  CLUS_2                          63                            94
  CLUS_3                          35                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(7Q36.3) MUTATED       61     45     13
  DEL PEAK 22(7Q36.3) WILD-TYPE    173     84     79
D61V3, multiclass
        clus
vv       DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE
  CLUS_1                          61                           173
  CLUS_2                          45                            84
  CLUS_3                          13                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(7Q36.3) MUTATED       31     36      5     31     16
  DEL PEAK 22(7Q36.3) WILD-TYPE     44    114     20     58    100
D61V4, multiclass
        clus
vv       DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE
  CLUS_1                          31                            44
  CLUS_2                          36                           114
  CLUS_3                           5                            20
  CLUS_4                          31                            58
  CLUS_5                          16                           100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(7Q36.3) MUTATED       65     77     21
  DEL PEAK 22(7Q36.3) WILD-TYPE     99    251    110
D61V5, multiclass
        clus
vv       DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE
  CLUS_1                          65                            99
  CLUS_2                          77                           251
  CLUS_3                          21                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(7Q36.3) MUTATED       52     23     46     34      8
  DEL PEAK 22(7Q36.3) WILD-TYPE     75     82    183     61     59
D61V6, multiclass
        clus
vv       DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE
  CLUS_1                          52                            75
  CLUS_2                          23                            82
  CLUS_3                          46                           183
  CLUS_4                          34                            61
  CLUS_5                           8                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(7Q36.3) MUTATED       58     55     35
  DEL PEAK 22(7Q36.3) WILD-TYPE     86    154    136
D61V7, multiclass
        clus
vv       DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE
  CLUS_1                          58                            86
  CLUS_2                          55                           154
  CLUS_3                          35                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(7Q36.3) MUTATED       16     41     41     17     33
  DEL PEAK 22(7Q36.3) WILD-TYPE     31     81    121     84     59
D61V8, multiclass
        clus
vv       DEL PEAK 22(7Q36.3) MUTATED DEL PEAK 22(7Q36.3) WILD-TYPE
  CLUS_1                          16                            31
  CLUS_2                          41                            81
  CLUS_3                          41                           121
  CLUS_4                          17                            84
  CLUS_5                          33                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 23(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(8P23.2) MUTATED       77    109     26
  DEL PEAK 23(8P23.2) WILD-TYPE     89    101    223
D62V1, multiclass
        clus
vv       DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE
  CLUS_1                          77                            89
  CLUS_2                         109                           101
  CLUS_3                          26                           223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(8P23.2) MUTATED       72     87     41
  DEL PEAK 23(8P23.2) WILD-TYPE    176     70    131
D62V2, multiclass
        clus
vv       DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE
  CLUS_1                          72                           176
  CLUS_2                          87                            70
  CLUS_3                          41                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(8P23.2) MUTATED       62     69     25
  DEL PEAK 23(8P23.2) WILD-TYPE    172     60     67
D62V3, multiclass
        clus
vv       DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE
  CLUS_1                          62                           172
  CLUS_2                          69                            60
  CLUS_3                          25                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(8P23.2) MUTATED       45     33      8     51     19
  DEL PEAK 23(8P23.2) WILD-TYPE     30    117     17     38     97
D62V4, multiclass
        clus
vv       DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE
  CLUS_1                          45                            30
  CLUS_2                          33                           117
  CLUS_3                           8                            17
  CLUS_4                          51                            38
  CLUS_5                          19                            97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(8P23.2) MUTATED       84     99     28
  DEL PEAK 23(8P23.2) WILD-TYPE     80    229    103
D62V5, multiclass
        clus
vv       DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE
  CLUS_1                          84                            80
  CLUS_2                          99                           229
  CLUS_3                          28                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(8P23.2) MUTATED       61     28     54     56     12
  DEL PEAK 23(8P23.2) WILD-TYPE     66     77    175     39     55
D62V6, multiclass
        clus
vv       DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE
  CLUS_1                          61                            66
  CLUS_2                          28                            77
  CLUS_3                          54                           175
  CLUS_4                          56                            39
  CLUS_5                          12                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(8P23.2) MUTATED       76     64     44
  DEL PEAK 23(8P23.2) WILD-TYPE     68    145    127
D62V7, multiclass
        clus
vv       DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE
  CLUS_1                          76                            68
  CLUS_2                          64                           145
  CLUS_3                          44                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(8P23.2) MUTATED       26     39     48     19     52
  DEL PEAK 23(8P23.2) WILD-TYPE     21     83    114     82     40
D62V8, multiclass
        clus
vv       DEL PEAK 23(8P23.2) MUTATED DEL PEAK 23(8P23.2) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                          39                            83
  CLUS_3                          48                           114
  CLUS_4                          19                            82
  CLUS_5                          52                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 24(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P23) MUTATED      113    135     54
  DEL PEAK 24(9P23) WILD-TYPE     53     75    195
D63V1, multiclass
        clus
vv       DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE
  CLUS_1                       113                          53
  CLUS_2                       135                          75
  CLUS_3                        54                         195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P23) MUTATED      118     95     70
  DEL PEAK 24(9P23) WILD-TYPE    130     62    102
D63V2, multiclass
        clus
vv       DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE
  CLUS_1                       118                         130
  CLUS_2                        95                          62
  CLUS_3                        70                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P23) MUTATED      117     66     31
  DEL PEAK 24(9P23) WILD-TYPE    117     63     61
D63V3, multiclass
        clus
vv       DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE
  CLUS_1                       117                         117
  CLUS_2                        66                          63
  CLUS_3                        31                          61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P23) MUTATED       45     67     11     50     41
  DEL PEAK 24(9P23) WILD-TYPE     30     83     14     39     75
D63V4, multiclass
        clus
vv       DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE
  CLUS_1                        45                          30
  CLUS_2                        67                          83
  CLUS_3                        11                          14
  CLUS_4                        50                          39
  CLUS_5                        41                          75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P23) MUTATED       94    160     47
  DEL PEAK 24(9P23) WILD-TYPE     70    168     84
D63V5, multiclass
        clus
vv       DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE
  CLUS_1                        94                          70
  CLUS_2                       160                         168
  CLUS_3                        47                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P23) MUTATED       82     43     98     54     24
  DEL PEAK 24(9P23) WILD-TYPE     45     62    131     41     43
D63V6, multiclass
        clus
vv       DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE
  CLUS_1                        82                          45
  CLUS_2                        43                          62
  CLUS_3                        98                         131
  CLUS_4                        54                          41
  CLUS_5                        24                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P23) MUTATED       84     99     77
  DEL PEAK 24(9P23) WILD-TYPE     60    110     94
D63V7, multiclass
        clus
vv       DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE
  CLUS_1                        84                          60
  CLUS_2                        99                         110
  CLUS_3                        77                          94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P23) MUTATED       28     65     72     41     54
  DEL PEAK 24(9P23) WILD-TYPE     19     57     90     60     38
D63V8, multiclass
        clus
vv       DEL PEAK 24(9P23) MUTATED DEL PEAK 24(9P23) WILD-TYPE
  CLUS_1                        28                          19
  CLUS_2                        65                          57
  CLUS_3                        72                          90
  CLUS_4                        41                          60
  CLUS_5                        54                          38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 25(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9P21.3) MUTATED      114    164     56
  DEL PEAK 25(9P21.3) WILD-TYPE     52     46    193
D64V1, multiclass
        clus
vv       DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE
  CLUS_1                         114                            52
  CLUS_2                         164                            46
  CLUS_3                          56                           193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9P21.3) MUTATED      121    120     75
  DEL PEAK 25(9P21.3) WILD-TYPE    127     37     97
D64V2, multiclass
        clus
vv       DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE
  CLUS_1                         121                           127
  CLUS_2                         120                            37
  CLUS_3                          75                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9P21.3) MUTATED      120     97     31
  DEL PEAK 25(9P21.3) WILD-TYPE    114     32     61
D64V3, multiclass
        clus
vv       DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE
  CLUS_1                         120                           114
  CLUS_2                          97                            32
  CLUS_3                          31                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9P21.3) MUTATED       49     70     15     77     37
  DEL PEAK 25(9P21.3) WILD-TYPE     26     80     10     12     79
D64V4, multiclass
        clus
vv       DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE
  CLUS_1                          49                            26
  CLUS_2                          70                            80
  CLUS_3                          15                            10
  CLUS_4                          77                            12
  CLUS_5                          37                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9P21.3) MUTATED      124    158     51
  DEL PEAK 25(9P21.3) WILD-TYPE     40    170     80
D64V5, multiclass
        clus
vv       DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE
  CLUS_1                         124                            40
  CLUS_2                         158                           170
  CLUS_3                          51                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9P21.3) MUTATED       85     43    102     80     23
  DEL PEAK 25(9P21.3) WILD-TYPE     42     62    127     15     44
D64V6, multiclass
        clus
vv       DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE
  CLUS_1                          85                            42
  CLUS_2                          43                            62
  CLUS_3                         102                           127
  CLUS_4                          80                            15
  CLUS_5                          23                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9P21.3) MUTATED      109     99     86
  DEL PEAK 25(9P21.3) WILD-TYPE     35    110     85
D64V7, multiclass
        clus
vv       DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE
  CLUS_1                         109                            35
  CLUS_2                          99                           110
  CLUS_3                          86                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9P21.3) MUTATED       32     70     68     44     80
  DEL PEAK 25(9P21.3) WILD-TYPE     15     52     94     57     12
D64V8, multiclass
        clus
vv       DEL PEAK 25(9P21.3) MUTATED DEL PEAK 25(9P21.3) WILD-TYPE
  CLUS_1                          32                            15
  CLUS_2                          70                            52
  CLUS_3                          68                            94
  CLUS_4                          44                            57
  CLUS_5                          80                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 26(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q21.11) MUTATED       68     83     25
  DEL PEAK 26(9Q21.11) WILD-TYPE     98    127    224
D65V1, multiclass
        clus
vv       DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE
  CLUS_1                           68                             98
  CLUS_2                           83                            127
  CLUS_3                           25                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q21.11) MUTATED       58     67     42
  DEL PEAK 26(9Q21.11) WILD-TYPE    190     90    130
D65V2, multiclass
        clus
vv       DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE
  CLUS_1                           58                            190
  CLUS_2                           67                             90
  CLUS_3                           42                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q21.11) MUTATED       67     44     16
  DEL PEAK 26(9Q21.11) WILD-TYPE    167     85     76
D65V3, multiclass
        clus
vv       DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE
  CLUS_1                           67                            167
  CLUS_2                           44                             85
  CLUS_3                           16                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(9Q21.11) MUTATED       32     35      4     35     21
  DEL PEAK 26(9Q21.11) WILD-TYPE     43    115     21     54     95
D65V4, multiclass
        clus
vv       DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE
  CLUS_1                           32                             43
  CLUS_2                           35                            115
  CLUS_3                            4                             21
  CLUS_4                           35                             54
  CLUS_5                           21                             95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q21.11) MUTATED       68     79     29
  DEL PEAK 26(9Q21.11) WILD-TYPE     96    249    102
D65V5, multiclass
        clus
vv       DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE
  CLUS_1                           68                             96
  CLUS_2                           79                            249
  CLUS_3                           29                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(9Q21.11) MUTATED       61     19     45     36     15
  DEL PEAK 26(9Q21.11) WILD-TYPE     66     86    184     59     52
D65V6, multiclass
        clus
vv       DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE
  CLUS_1                           61                             66
  CLUS_2                           19                             86
  CLUS_3                           45                            184
  CLUS_4                           36                             59
  CLUS_5                           15                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q21.11) MUTATED       58     46     50
  DEL PEAK 26(9Q21.11) WILD-TYPE     86    163    121
D65V7, multiclass
        clus
vv       DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE
  CLUS_1                           58                             86
  CLUS_2                           46                            163
  CLUS_3                           50                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(9Q21.11) MUTATED       22     31     38     27     36
  DEL PEAK 26(9Q21.11) WILD-TYPE     25     91    124     74     56
D65V8, multiclass
        clus
vv       DEL PEAK 26(9Q21.11) MUTATED DEL PEAK 26(9Q21.11) WILD-TYPE
  CLUS_1                           22                             25
  CLUS_2                           31                             91
  CLUS_3                           38                            124
  CLUS_4                           27                             74
  CLUS_5                           36                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 27(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       39     74     18
  DEL PEAK 27(10P15.3) WILD-TYPE    127    136    231
D66V1, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           39                            127
  CLUS_2                           74                            136
  CLUS_3                           18                            231
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       42     49     31
  DEL PEAK 27(10P15.3) WILD-TYPE    206    108    141
D66V2, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           42                            206
  CLUS_2                           49                            108
  CLUS_3                           31                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       36     45     14
  DEL PEAK 27(10P15.3) WILD-TYPE    198     84     78
D66V3, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           36                            198
  CLUS_2                           45                             84
  CLUS_3                           14                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10P15.3) MUTATED       15     24      7     35     14
  DEL PEAK 27(10P15.3) WILD-TYPE     60    126     18     54    102
D66V4, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           15                             60
  CLUS_2                           24                            126
  CLUS_3                            7                             18
  CLUS_4                           35                             54
  CLUS_5                           14                            102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       50     61     20
  DEL PEAK 27(10P15.3) WILD-TYPE    114    267    111
D66V5, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           50                            114
  CLUS_2                           61                            267
  CLUS_3                           20                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10P15.3) MUTATED       30     20     39     36      6
  DEL PEAK 27(10P15.3) WILD-TYPE     97     85    190     59     61
D66V6, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           30                             97
  CLUS_2                           20                             85
  CLUS_3                           39                            190
  CLUS_4                           36                             59
  CLUS_5                            6                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       44     40     28
  DEL PEAK 27(10P15.3) WILD-TYPE    100    169    143
D66V7, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           44                            100
  CLUS_2                           40                            169
  CLUS_3                           28                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10P15.3) MUTATED       14     24     22     16     36
  DEL PEAK 27(10P15.3) WILD-TYPE     33     98    140     85     56
D66V8, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           14                             33
  CLUS_2                           24                             98
  CLUS_3                           22                            140
  CLUS_4                           16                             85
  CLUS_5                           36                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 28(10P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       25     67     10
  DEL PEAK 28(10P11.21) WILD-TYPE    141    143    239
D67V1, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            25                             141
  CLUS_2                            67                             143
  CLUS_3                            10                             239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       23     53     21
  DEL PEAK 28(10P11.21) WILD-TYPE    225    104    151
D67V2, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            23                             225
  CLUS_2                            53                             104
  CLUS_3                            21                             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       24     45      9
  DEL PEAK 28(10P11.21) WILD-TYPE    210     84     83
D67V3, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            24                             210
  CLUS_2                            45                              84
  CLUS_3                             9                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10P11.21) MUTATED       11     16      4     39      8
  DEL PEAK 28(10P11.21) WILD-TYPE     64    134     21     50    108
D67V4, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            11                              64
  CLUS_2                            16                             134
  CLUS_3                             4                              21
  CLUS_4                            39                              50
  CLUS_5                             8                             108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       49     40     12
  DEL PEAK 28(10P11.21) WILD-TYPE    115    288    119
D67V5, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            49                             115
  CLUS_2                            40                             288
  CLUS_3                            12                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10P11.21) MUTATED       24      9     25     41      2
  DEL PEAK 28(10P11.21) WILD-TYPE    103     96    204     54     65
D67V6, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            24                             103
  CLUS_2                             9                              96
  CLUS_3                            25                             204
  CLUS_4                            41                              54
  CLUS_5                             2                              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       42     26     21
  DEL PEAK 28(10P11.21) WILD-TYPE    102    183    150
D67V7, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            42                             102
  CLUS_2                            26                             183
  CLUS_3                            21                             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10P11.21) MUTATED        9     13     16     11     40
  DEL PEAK 28(10P11.21) WILD-TYPE     38    109    146     90     52
D67V8, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                             9                              38
  CLUS_2                            13                             109
  CLUS_3                            16                             146
  CLUS_4                            11                              90
  CLUS_5                            40                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 29(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q21.1) MUTATED       39     57     16
  DEL PEAK 29(10Q21.1) WILD-TYPE    127    153    233
D68V1, multiclass
        clus
vv       DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE
  CLUS_1                           39                            127
  CLUS_2                           57                            153
  CLUS_3                           16                            233
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q21.1) MUTATED       28     54     22
  DEL PEAK 29(10Q21.1) WILD-TYPE    220    103    150
D68V2, multiclass
        clus
vv       DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE
  CLUS_1                           28                            220
  CLUS_2                           54                            103
  CLUS_3                           22                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q21.1) MUTATED       36     36     10
  DEL PEAK 29(10Q21.1) WILD-TYPE    198     93     82
D68V3, multiclass
        clus
vv       DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE
  CLUS_1                           36                            198
  CLUS_2                           36                             93
  CLUS_3                           10                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(10Q21.1) MUTATED       13     24      5     31      9
  DEL PEAK 29(10Q21.1) WILD-TYPE     62    126     20     58    107
D68V4, multiclass
        clus
vv       DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE
  CLUS_1                           13                             62
  CLUS_2                           24                            126
  CLUS_3                            5                             20
  CLUS_4                           31                             58
  CLUS_5                            9                            107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q21.1) MUTATED       43     56     13
  DEL PEAK 29(10Q21.1) WILD-TYPE    121    272    118
D68V5, multiclass
        clus
vv       DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE
  CLUS_1                           43                            121
  CLUS_2                           56                            272
  CLUS_3                           13                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(10Q21.1) MUTATED       37     13     29     31      2
  DEL PEAK 29(10Q21.1) WILD-TYPE     90     92    200     64     65
D68V6, multiclass
        clus
vv       DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE
  CLUS_1                           37                             90
  CLUS_2                           13                             92
  CLUS_3                           29                            200
  CLUS_4                           31                             64
  CLUS_5                            2                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q21.1) MUTATED       39     32     24
  DEL PEAK 29(10Q21.1) WILD-TYPE    105    177    147
D68V7, multiclass
        clus
vv       DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE
  CLUS_1                           39                            105
  CLUS_2                           32                            177
  CLUS_3                           24                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(10Q21.1) MUTATED       12     22     14     16     31
  DEL PEAK 29(10Q21.1) WILD-TYPE     35    100    148     85     61
D68V8, multiclass
        clus
vv       DEL PEAK 29(10Q21.1) MUTATED DEL PEAK 29(10Q21.1) WILD-TYPE
  CLUS_1                           12                             35
  CLUS_2                           22                            100
  CLUS_3                           14                            148
  CLUS_4                           16                             85
  CLUS_5                           31                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 30(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(10Q22.3) MUTATED       54     65     16
  DEL PEAK 30(10Q22.3) WILD-TYPE    112    145    233
D69V1, multiclass
        clus
vv       DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE
  CLUS_1                           54                            112
  CLUS_2                           65                            145
  CLUS_3                           16                            233
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(10Q22.3) MUTATED       45     58     23
  DEL PEAK 30(10Q22.3) WILD-TYPE    203     99    149
D69V2, multiclass
        clus
vv       DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE
  CLUS_1                           45                            203
  CLUS_2                           58                             99
  CLUS_3                           23                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(10Q22.3) MUTATED       45     43      9
  DEL PEAK 30(10Q22.3) WILD-TYPE    189     86     83
D69V3, multiclass
        clus
vv       DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE
  CLUS_1                           45                            189
  CLUS_2                           43                             86
  CLUS_3                            9                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(10Q22.3) MUTATED       19     27      6     36      9
  DEL PEAK 30(10Q22.3) WILD-TYPE     56    123     19     53    107
D69V4, multiclass
        clus
vv       DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE
  CLUS_1                           19                             56
  CLUS_2                           27                            123
  CLUS_3                            6                             19
  CLUS_4                           36                             53
  CLUS_5                            9                            107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(10Q22.3) MUTATED       51     71     13
  DEL PEAK 30(10Q22.3) WILD-TYPE    113    257    118
D69V5, multiclass
        clus
vv       DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE
  CLUS_1                           51                            113
  CLUS_2                           71                            257
  CLUS_3                           13                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(10Q22.3) MUTATED       41     21     34     36      3
  DEL PEAK 30(10Q22.3) WILD-TYPE     86     84    195     59     64
D69V6, multiclass
        clus
vv       DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE
  CLUS_1                           41                             86
  CLUS_2                           21                             84
  CLUS_3                           34                            195
  CLUS_4                           36                             59
  CLUS_5                            3                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(10Q22.3) MUTATED       49     39     24
  DEL PEAK 30(10Q22.3) WILD-TYPE     95    170    147
D69V7, multiclass
        clus
vv       DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE
  CLUS_1                           49                             95
  CLUS_2                           39                            170
  CLUS_3                           24                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(10Q22.3) MUTATED       15     30     17     14     36
  DEL PEAK 30(10Q22.3) WILD-TYPE     32     92    145     87     56
D69V8, multiclass
        clus
vv       DEL PEAK 30(10Q22.3) MUTATED DEL PEAK 30(10Q22.3) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                           30                             92
  CLUS_3                           17                            145
  CLUS_4                           14                             87
  CLUS_5                           36                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 31(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(10Q23.31) MUTATED       69     91     23
  DEL PEAK 31(10Q23.31) WILD-TYPE     97    119    226
D70V1, multiclass
        clus
vv       DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE
  CLUS_1                            69                              97
  CLUS_2                            91                             119
  CLUS_3                            23                             226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(10Q23.31) MUTATED       59     73     37
  DEL PEAK 31(10Q23.31) WILD-TYPE    189     84    135
D70V2, multiclass
        clus
vv       DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE
  CLUS_1                            59                             189
  CLUS_2                            73                              84
  CLUS_3                            37                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(10Q23.31) MUTATED       67     49     12
  DEL PEAK 31(10Q23.31) WILD-TYPE    167     80     80
D70V3, multiclass
        clus
vv       DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE
  CLUS_1                            67                             167
  CLUS_2                            49                              80
  CLUS_3                            12                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(10Q23.31) MUTATED       26     44      6     39     13
  DEL PEAK 31(10Q23.31) WILD-TYPE     49    106     19     50    103
D70V4, multiclass
        clus
vv       DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE
  CLUS_1                            26                              49
  CLUS_2                            44                             106
  CLUS_3                             6                              19
  CLUS_4                            39                              50
  CLUS_5                            13                             103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(10Q23.31) MUTATED       62    103     18
  DEL PEAK 31(10Q23.31) WILD-TYPE    102    225    113
D70V5, multiclass
        clus
vv       DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE
  CLUS_1                            62                             102
  CLUS_2                           103                             225
  CLUS_3                            18                             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(10Q23.31) MUTATED       57     27     53     40      6
  DEL PEAK 31(10Q23.31) WILD-TYPE     70     78    176     55     61
D70V6, multiclass
        clus
vv       DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE
  CLUS_1                            57                              70
  CLUS_2                            27                              78
  CLUS_3                            53                             176
  CLUS_4                            40                              55
  CLUS_5                             6                              61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(10Q23.31) MUTATED       60     58     37
  DEL PEAK 31(10Q23.31) WILD-TYPE     84    151    134
D70V7, multiclass
        clus
vv       DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE
  CLUS_1                            60                              84
  CLUS_2                            58                             151
  CLUS_3                            37                             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(10Q23.31) MUTATED       21     41     32     21     40
  DEL PEAK 31(10Q23.31) WILD-TYPE     26     81    130     80     52
D70V8, multiclass
        clus
vv       DEL PEAK 31(10Q23.31) MUTATED DEL PEAK 31(10Q23.31) WILD-TYPE
  CLUS_1                            21                              26
  CLUS_2                            41                              81
  CLUS_3                            32                             130
  CLUS_4                            21                              80
  CLUS_5                            40                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 32(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(11P15.5) MUTATED       61     95     19
  DEL PEAK 32(11P15.5) WILD-TYPE    105    115    230
D71V1, multiclass
        clus
vv       DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE
  CLUS_1                           61                            105
  CLUS_2                           95                            115
  CLUS_3                           19                            230
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(11P15.5) MUTATED       62     71     28
  DEL PEAK 32(11P15.5) WILD-TYPE    186     86    144
D71V2, multiclass
        clus
vv       DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE
  CLUS_1                           62                            186
  CLUS_2                           71                             86
  CLUS_3                           28                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(11P15.5) MUTATED       53     59     13
  DEL PEAK 32(11P15.5) WILD-TYPE    181     70     79
D71V3, multiclass
        clus
vv       DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE
  CLUS_1                           53                            181
  CLUS_2                           59                             70
  CLUS_3                           13                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(11P15.5) MUTATED       25     33      9     42     16
  DEL PEAK 32(11P15.5) WILD-TYPE     50    117     16     47    100
D71V4, multiclass
        clus
vv       DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE
  CLUS_1                           25                             50
  CLUS_2                           33                            117
  CLUS_3                            9                             16
  CLUS_4                           42                             47
  CLUS_5                           16                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(11P15.5) MUTATED       68     80     27
  DEL PEAK 32(11P15.5) WILD-TYPE     96    248    104
D71V5, multiclass
        clus
vv       DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE
  CLUS_1                           68                             96
  CLUS_2                           80                            248
  CLUS_3                           27                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(11P15.5) MUTATED       46     22     54     43     10
  DEL PEAK 32(11P15.5) WILD-TYPE     81     83    175     52     57
D71V6, multiclass
        clus
vv       DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE
  CLUS_1                           46                             81
  CLUS_2                           22                             83
  CLUS_3                           54                            175
  CLUS_4                           43                             52
  CLUS_5                           10                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(11P15.5) MUTATED       60     48     40
  DEL PEAK 32(11P15.5) WILD-TYPE     84    161    131
D71V7, multiclass
        clus
vv       DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE
  CLUS_1                           60                             84
  CLUS_2                           48                            161
  CLUS_3                           40                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(11P15.5) MUTATED       14     36     36     20     42
  DEL PEAK 32(11P15.5) WILD-TYPE     33     86    126     81     50
D71V8, multiclass
        clus
vv       DEL PEAK 32(11P15.5) MUTATED DEL PEAK 32(11P15.5) WILD-TYPE
  CLUS_1                           14                             33
  CLUS_2                           36                             86
  CLUS_3                           36                            126
  CLUS_4                           20                             81
  CLUS_5                           42                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 33(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(11Q25) MUTATED       58    101     19
  DEL PEAK 33(11Q25) WILD-TYPE    108    109    230
D72V1, multiclass
        clus
vv       DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE
  CLUS_1                         58                          108
  CLUS_2                        101                          109
  CLUS_3                         19                          230
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(11Q25) MUTATED       63     77     30
  DEL PEAK 33(11Q25) WILD-TYPE    185     80    142
D72V2, multiclass
        clus
vv       DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE
  CLUS_1                         63                          185
  CLUS_2                         77                           80
  CLUS_3                         30                          142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(11Q25) MUTATED       56     58     18
  DEL PEAK 33(11Q25) WILD-TYPE    178     71     74
D72V3, multiclass
        clus
vv       DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE
  CLUS_1                         56                          178
  CLUS_2                         58                           71
  CLUS_3                         18                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(11Q25) MUTATED       25     38      7     47     15
  DEL PEAK 33(11Q25) WILD-TYPE     50    112     18     42    101
D72V4, multiclass
        clus
vv       DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE
  CLUS_1                         25                           50
  CLUS_2                         38                          112
  CLUS_3                          7                           18
  CLUS_4                         47                           42
  CLUS_5                         15                          101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(11Q25) MUTATED       74     79     24
  DEL PEAK 33(11Q25) WILD-TYPE     90    249    107
D72V5, multiclass
        clus
vv       DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE
  CLUS_1                         74                           90
  CLUS_2                         79                          249
  CLUS_3                         24                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(11Q25) MUTATED       39     23     55     51      9
  DEL PEAK 33(11Q25) WILD-TYPE     88     82    174     44     58
D72V6, multiclass
        clus
vv       DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE
  CLUS_1                         39                           88
  CLUS_2                         23                           82
  CLUS_3                         55                          174
  CLUS_4                         51                           44
  CLUS_5                          9                           58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(11Q25) MUTATED       66     53     37
  DEL PEAK 33(11Q25) WILD-TYPE     78    156    134
D72V7, multiclass
        clus
vv       DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE
  CLUS_1                         66                           78
  CLUS_2                         53                          156
  CLUS_3                         37                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(11Q25) MUTATED       12     37     39     18     50
  DEL PEAK 33(11Q25) WILD-TYPE     35     85    123     83     42
D72V8, multiclass
        clus
vv       DEL PEAK 33(11Q25) MUTATED DEL PEAK 33(11Q25) WILD-TYPE
  CLUS_1                         12                           35
  CLUS_2                         37                           85
  CLUS_3                         39                          123
  CLUS_4                         18                           83
  CLUS_5                         50                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 34(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(12P13.1) MUTATED       64     32     17
  DEL PEAK 34(12P13.1) WILD-TYPE    102    178    232
D73V1, multiclass
        clus
vv       DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE
  CLUS_1                           64                            102
  CLUS_2                           32                            178
  CLUS_3                           17                            232
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(12P13.1) MUTATED       50     34     21
  DEL PEAK 34(12P13.1) WILD-TYPE    198    123    151
D73V2, multiclass
        clus
vv       DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE
  CLUS_1                           50                            198
  CLUS_2                           34                            123
  CLUS_3                           21                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(12P13.1) MUTATED       44     20     13
  DEL PEAK 34(12P13.1) WILD-TYPE    190    109     79
D73V3, multiclass
        clus
vv       DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE
  CLUS_1                           44                            190
  CLUS_2                           20                            109
  CLUS_3                           13                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(12P13.1) MUTATED       30     19     10      7     11
  DEL PEAK 34(12P13.1) WILD-TYPE     45    131     15     82    105
D73V4, multiclass
        clus
vv       DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE
  CLUS_1                           30                             45
  CLUS_2                           19                            131
  CLUS_3                           10                             15
  CLUS_4                            7                             82
  CLUS_5                           11                            105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(12P13.1) MUTATED       32     61     20
  DEL PEAK 34(12P13.1) WILD-TYPE    132    267    111
D73V5, multiclass
        clus
vv       DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE
  CLUS_1                           32                            132
  CLUS_2                           61                            267
  CLUS_3                           20                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(12P13.1) MUTATED       45     16     38      7      7
  DEL PEAK 34(12P13.1) WILD-TYPE     82     89    191     88     60
D73V6, multiclass
        clus
vv       DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE
  CLUS_1                           45                             82
  CLUS_2                           16                             89
  CLUS_3                           38                            191
  CLUS_4                            7                             88
  CLUS_5                            7                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(12P13.1) MUTATED       32     41     28
  DEL PEAK 34(12P13.1) WILD-TYPE    112    168    143
D73V7, multiclass
        clus
vv       DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE
  CLUS_1                           32                            112
  CLUS_2                           41                            168
  CLUS_3                           28                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(12P13.1) MUTATED       20     25     30     19      7
  DEL PEAK 34(12P13.1) WILD-TYPE     27     97    132     82     85
D73V8, multiclass
        clus
vv       DEL PEAK 34(12P13.1) MUTATED DEL PEAK 34(12P13.1) WILD-TYPE
  CLUS_1                           20                             27
  CLUS_2                           25                             97
  CLUS_3                           30                            132
  CLUS_4                           19                             82
  CLUS_5                            7                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 35(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(12Q23.1) MUTATED       51     51      7
  DEL PEAK 35(12Q23.1) WILD-TYPE    115    159    242
D74V1, multiclass
        clus
vv       DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE
  CLUS_1                           51                            115
  CLUS_2                           51                            159
  CLUS_3                            7                            242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(12Q23.1) MUTATED       42     41     20
  DEL PEAK 35(12Q23.1) WILD-TYPE    206    116    152
D74V2, multiclass
        clus
vv       DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE
  CLUS_1                           42                            206
  CLUS_2                           41                            116
  CLUS_3                           20                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(12Q23.1) MUTATED       40     30      8
  DEL PEAK 35(12Q23.1) WILD-TYPE    194     99     84
D74V3, multiclass
        clus
vv       DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE
  CLUS_1                           40                            194
  CLUS_2                           30                             99
  CLUS_3                            8                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(12Q23.1) MUTATED       19     24      9     19      7
  DEL PEAK 35(12Q23.1) WILD-TYPE     56    126     16     70    109
D74V4, multiclass
        clus
vv       DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE
  CLUS_1                           19                             56
  CLUS_2                           24                            126
  CLUS_3                            9                             16
  CLUS_4                           19                             70
  CLUS_5                            7                            109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(12Q23.1) MUTATED       34     59     16
  DEL PEAK 35(12Q23.1) WILD-TYPE    130    269    115
D74V5, multiclass
        clus
vv       DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE
  CLUS_1                           34                            130
  CLUS_2                           59                            269
  CLUS_3                           16                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(12Q23.1) MUTATED       33     13     39     19      5
  DEL PEAK 35(12Q23.1) WILD-TYPE     94     92    190     76     62
D74V6, multiclass
        clus
vv       DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE
  CLUS_1                           33                             94
  CLUS_2                           13                             92
  CLUS_3                           39                            190
  CLUS_4                           19                             76
  CLUS_5                            5                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(12Q23.1) MUTATED       34     37     28
  DEL PEAK 35(12Q23.1) WILD-TYPE    110    172    143
D74V7, multiclass
        clus
vv       DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE
  CLUS_1                           34                            110
  CLUS_2                           37                            172
  CLUS_3                           28                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(12Q23.1) MUTATED       10     30     24     15     20
  DEL PEAK 35(12Q23.1) WILD-TYPE     37     92    138     86     72
D74V8, multiclass
        clus
vv       DEL PEAK 35(12Q23.1) MUTATED DEL PEAK 35(12Q23.1) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           30                             92
  CLUS_3                           24                            138
  CLUS_4                           15                             86
  CLUS_5                           20                             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 36(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(13Q12.11) MUTATED       20    101     17
  DEL PEAK 36(13Q12.11) WILD-TYPE    146    109    232
D75V1, multiclass
        clus
vv       DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE
  CLUS_1                            20                             146
  CLUS_2                           101                             109
  CLUS_3                            17                             232
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(13Q12.11) MUTATED       49     60     22
  DEL PEAK 36(13Q12.11) WILD-TYPE    199     97    150
D75V2, multiclass
        clus
vv       DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE
  CLUS_1                            49                             199
  CLUS_2                            60                              97
  CLUS_3                            22                             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(13Q12.11) MUTATED       40     56     17
  DEL PEAK 36(13Q12.11) WILD-TYPE    194     73     75
D75V3, multiclass
        clus
vv       DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE
  CLUS_1                            40                             194
  CLUS_2                            56                              73
  CLUS_3                            17                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(13Q12.11) MUTATED       26     23      4     45     15
  DEL PEAK 36(13Q12.11) WILD-TYPE     49    127     21     44    101
D75V4, multiclass
        clus
vv       DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE
  CLUS_1                            26                              49
  CLUS_2                            23                             127
  CLUS_3                             4                              21
  CLUS_4                            45                              44
  CLUS_5                            15                             101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(13Q12.11) MUTATED       67     50     21
  DEL PEAK 36(13Q12.11) WILD-TYPE     97    278    110
D75V5, multiclass
        clus
vv       DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE
  CLUS_1                            67                              97
  CLUS_2                            50                             278
  CLUS_3                            21                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(13Q12.11) MUTATED       28     17     35     50      8
  DEL PEAK 36(13Q12.11) WILD-TYPE     99     88    194     45     59
D75V6, multiclass
        clus
vv       DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE
  CLUS_1                            28                              99
  CLUS_2                            17                              88
  CLUS_3                            35                             194
  CLUS_4                            50                              45
  CLUS_5                             8                              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(13Q12.11) MUTATED       57     35     31
  DEL PEAK 36(13Q12.11) WILD-TYPE     87    174    140
D75V7, multiclass
        clus
vv       DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE
  CLUS_1                            57                              87
  CLUS_2                            35                             174
  CLUS_3                            31                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(13Q12.11) MUTATED        8     27     25     14     49
  DEL PEAK 36(13Q12.11) WILD-TYPE     39     95    137     87     43
D75V8, multiclass
        clus
vv       DEL PEAK 36(13Q12.11) MUTATED DEL PEAK 36(13Q12.11) WILD-TYPE
  CLUS_1                             8                              39
  CLUS_2                            27                              95
  CLUS_3                            25                             137
  CLUS_4                            14                              87
  CLUS_5                            49                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 37(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(13Q14.2) MUTATED        9     99     17
  DEL PEAK 37(13Q14.2) WILD-TYPE    157    111    232
D76V1, multiclass
        clus
vv       DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE
  CLUS_1                            9                            157
  CLUS_2                           99                            111
  CLUS_3                           17                            232
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(13Q14.2) MUTATED       41     55     21
  DEL PEAK 37(13Q14.2) WILD-TYPE    207    102    151
D76V2, multiclass
        clus
vv       DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE
  CLUS_1                           41                            207
  CLUS_2                           55                            102
  CLUS_3                           21                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(13Q14.2) MUTATED       36     56     18
  DEL PEAK 37(13Q14.2) WILD-TYPE    198     73     74
D76V3, multiclass
        clus
vv       DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE
  CLUS_1                           36                            198
  CLUS_2                           56                             73
  CLUS_3                           18                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(13Q14.2) MUTATED       26     21      5     43     15
  DEL PEAK 37(13Q14.2) WILD-TYPE     49    129     20     46    101
D76V4, multiclass
        clus
vv       DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE
  CLUS_1                           26                             49
  CLUS_2                           21                            129
  CLUS_3                            5                             20
  CLUS_4                           43                             46
  CLUS_5                           15                            101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(13Q14.2) MUTATED       62     45     17
  DEL PEAK 37(13Q14.2) WILD-TYPE    102    283    114
D76V5, multiclass
        clus
vv       DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE
  CLUS_1                           62                            102
  CLUS_2                           45                            283
  CLUS_3                           17                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(13Q14.2) MUTATED       24     15     31     48      6
  DEL PEAK 37(13Q14.2) WILD-TYPE    103     90    198     47     61
D76V6, multiclass
        clus
vv       DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE
  CLUS_1                           24                            103
  CLUS_2                           15                             90
  CLUS_3                           31                            198
  CLUS_4                           48                             47
  CLUS_5                            6                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(13Q14.2) MUTATED       53     29     25
  DEL PEAK 37(13Q14.2) WILD-TYPE     91    180    146
D76V7, multiclass
        clus
vv       DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE
  CLUS_1                           53                             91
  CLUS_2                           29                            180
  CLUS_3                           25                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(13Q14.2) MUTATED        8     21     21     11     46
  DEL PEAK 37(13Q14.2) WILD-TYPE     39    101    141     90     46
D76V8, multiclass
        clus
vv       DEL PEAK 37(13Q14.2) MUTATED DEL PEAK 37(13Q14.2) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           21                            101
  CLUS_3                           21                            141
  CLUS_4                           11                             90
  CLUS_5                           46                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 38(13Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(13Q21.31) MUTATED        8     98     20
  DEL PEAK 38(13Q21.31) WILD-TYPE    158    112    229
D77V1, multiclass
        clus
vv       DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE
  CLUS_1                             8                             158
  CLUS_2                            98                             112
  CLUS_3                            20                             229
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(13Q21.31) MUTATED       43     52     22
  DEL PEAK 38(13Q21.31) WILD-TYPE    205    105    150
D77V2, multiclass
        clus
vv       DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE
  CLUS_1                            43                             205
  CLUS_2                            52                             105
  CLUS_3                            22                             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(13Q21.31) MUTATED       40     52     16
  DEL PEAK 38(13Q21.31) WILD-TYPE    194     77     76
D77V3, multiclass
        clus
vv       DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE
  CLUS_1                            40                             194
  CLUS_2                            52                              77
  CLUS_3                            16                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(13Q21.31) MUTATED       21     26      7     40     14
  DEL PEAK 38(13Q21.31) WILD-TYPE     54    124     18     49    102
D77V4, multiclass
        clus
vv       DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE
  CLUS_1                            21                              54
  CLUS_2                            26                             124
  CLUS_3                             7                              18
  CLUS_4                            40                              49
  CLUS_5                            14                             102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(13Q21.31) MUTATED       57     52     17
  DEL PEAK 38(13Q21.31) WILD-TYPE    107    276    114
D77V5, multiclass
        clus
vv       DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE
  CLUS_1                            57                             107
  CLUS_2                            52                             276
  CLUS_3                            17                             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(13Q21.31) MUTATED       25     14     37     44      6
  DEL PEAK 38(13Q21.31) WILD-TYPE    102     91    192     51     61
D77V6, multiclass
        clus
vv       DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE
  CLUS_1                            25                             102
  CLUS_2                            14                              91
  CLUS_3                            37                             192
  CLUS_4                            44                              51
  CLUS_5                             6                              61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(13Q21.31) MUTATED       49     33     27
  DEL PEAK 38(13Q21.31) WILD-TYPE     95    176    144
D77V7, multiclass
        clus
vv       DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE
  CLUS_1                            49                              95
  CLUS_2                            33                             176
  CLUS_3                            27                             144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(13Q21.31) MUTATED        6     28     19     13     43
  DEL PEAK 38(13Q21.31) WILD-TYPE     41     94    143     88     49
D77V8, multiclass
        clus
vv       DEL PEAK 38(13Q21.31) MUTATED DEL PEAK 38(13Q21.31) WILD-TYPE
  CLUS_1                             6                              41
  CLUS_2                            28                              94
  CLUS_3                            19                             143
  CLUS_4                            13                              88
  CLUS_5                            43                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 39(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(14Q23.3) MUTATED       80     74     33
  DEL PEAK 39(14Q23.3) WILD-TYPE     86    136    216
D78V1, multiclass
        clus
vv       DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE
  CLUS_1                           80                             86
  CLUS_2                           74                            136
  CLUS_3                           33                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(14Q23.3) MUTATED       74     62     38
  DEL PEAK 39(14Q23.3) WILD-TYPE    174     95    134
D78V2, multiclass
        clus
vv       DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE
  CLUS_1                           74                            174
  CLUS_2                           62                             95
  CLUS_3                           38                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(14Q23.3) MUTATED       74     33     21
  DEL PEAK 39(14Q23.3) WILD-TYPE    160     96     71
D78V3, multiclass
        clus
vv       DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE
  CLUS_1                           74                            160
  CLUS_2                           33                             96
  CLUS_3                           21                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(14Q23.3) MUTATED       40     40      7     16     25
  DEL PEAK 39(14Q23.3) WILD-TYPE     35    110     18     73     91
D78V4, multiclass
        clus
vv       DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE
  CLUS_1                           40                             35
  CLUS_2                           40                            110
  CLUS_3                            7                             18
  CLUS_4                           16                             73
  CLUS_5                           25                             91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(14Q23.3) MUTATED       52    104     31
  DEL PEAK 39(14Q23.3) WILD-TYPE    112    224    100
D78V5, multiclass
        clus
vv       DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE
  CLUS_1                           52                            112
  CLUS_2                          104                            224
  CLUS_3                           31                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(14Q23.3) MUTATED       69     28     57     19     14
  DEL PEAK 39(14Q23.3) WILD-TYPE     58     77    172     76     53
D78V6, multiclass
        clus
vv       DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE
  CLUS_1                           69                             58
  CLUS_2                           28                             77
  CLUS_3                           57                            172
  CLUS_4                           19                             76
  CLUS_5                           14                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(14Q23.3) MUTATED       50     64     43
  DEL PEAK 39(14Q23.3) WILD-TYPE     94    145    128
D78V7, multiclass
        clus
vv       DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE
  CLUS_1                           50                             94
  CLUS_2                           64                            145
  CLUS_3                           43                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(14Q23.3) MUTATED       27     44     45     22     19
  DEL PEAK 39(14Q23.3) WILD-TYPE     20     78    117     79     73
D78V8, multiclass
        clus
vv       DEL PEAK 39(14Q23.3) MUTATED DEL PEAK 39(14Q23.3) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                           44                             78
  CLUS_3                           45                            117
  CLUS_4                           22                             79
  CLUS_5                           19                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 40(14Q32.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(14Q32.32) MUTATED       74     81     35
  DEL PEAK 40(14Q32.32) WILD-TYPE     92    129    214
D79V1, multiclass
        clus
vv       DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE
  CLUS_1                            74                              92
  CLUS_2                            81                             129
  CLUS_3                            35                             214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(14Q32.32) MUTATED       78     58     40
  DEL PEAK 40(14Q32.32) WILD-TYPE    170     99    132
D79V2, multiclass
        clus
vv       DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE
  CLUS_1                            78                             170
  CLUS_2                            58                              99
  CLUS_3                            40                             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(14Q32.32) MUTATED       76     38     22
  DEL PEAK 40(14Q32.32) WILD-TYPE    158     91     70
D79V3, multiclass
        clus
vv       DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE
  CLUS_1                            76                             158
  CLUS_2                            38                              91
  CLUS_3                            22                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(14Q32.32) MUTATED       37     42      9     20     28
  DEL PEAK 40(14Q32.32) WILD-TYPE     38    108     16     69     88
D79V4, multiclass
        clus
vv       DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE
  CLUS_1                            37                              38
  CLUS_2                            42                             108
  CLUS_3                             9                              16
  CLUS_4                            20                              69
  CLUS_5                            28                              88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(14Q32.32) MUTATED       50    106     34
  DEL PEAK 40(14Q32.32) WILD-TYPE    114    222     97
D79V5, multiclass
        clus
vv       DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE
  CLUS_1                            50                             114
  CLUS_2                           106                             222
  CLUS_3                            34                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(14Q32.32) MUTATED       58     27     64     24     17
  DEL PEAK 40(14Q32.32) WILD-TYPE     69     78    165     71     50
D79V6, multiclass
        clus
vv       DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE
  CLUS_1                            58                              69
  CLUS_2                            27                              78
  CLUS_3                            64                             165
  CLUS_4                            24                              71
  CLUS_5                            17                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(14Q32.32) MUTATED       49     62     49
  DEL PEAK 40(14Q32.32) WILD-TYPE     95    147    122
D79V7, multiclass
        clus
vv       DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE
  CLUS_1                            49                              95
  CLUS_2                            62                             147
  CLUS_3                            49                             122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(14Q32.32) MUTATED       24     42     45     25     24
  DEL PEAK 40(14Q32.32) WILD-TYPE     23     80    117     76     68
D79V8, multiclass
        clus
vv       DEL PEAK 40(14Q32.32) MUTATED DEL PEAK 40(14Q32.32) WILD-TYPE
  CLUS_1                            24                              23
  CLUS_2                            42                              80
  CLUS_3                            45                             117
  CLUS_4                            25                              76
  CLUS_5                            24                              68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 41(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(15Q11.2) MUTATED       72     85     26
  DEL PEAK 41(15Q11.2) WILD-TYPE     94    125    223
D80V1, multiclass
        clus
vv       DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE
  CLUS_1                           72                             94
  CLUS_2                           85                            125
  CLUS_3                           26                            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(15Q11.2) MUTATED       75     56     42
  DEL PEAK 41(15Q11.2) WILD-TYPE    173    101    130
D80V2, multiclass
        clus
vv       DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE
  CLUS_1                           75                            173
  CLUS_2                           56                            101
  CLUS_3                           42                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(15Q11.2) MUTATED       77     39     13
  DEL PEAK 41(15Q11.2) WILD-TYPE    157     90     79
D80V3, multiclass
        clus
vv       DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE
  CLUS_1                           77                            157
  CLUS_2                           39                             90
  CLUS_3                           13                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(15Q11.2) MUTATED       32     45      8     26     18
  DEL PEAK 41(15Q11.2) WILD-TYPE     43    105     17     63     98
D80V4, multiclass
        clus
vv       DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE
  CLUS_1                           32                             43
  CLUS_2                           45                            105
  CLUS_3                            8                             17
  CLUS_4                           26                             63
  CLUS_5                           18                             98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(15Q11.2) MUTATED       52    105     26
  DEL PEAK 41(15Q11.2) WILD-TYPE    112    223    105
D80V5, multiclass
        clus
vv       DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE
  CLUS_1                           52                            112
  CLUS_2                          105                            223
  CLUS_3                           26                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(15Q11.2) MUTATED       60     26     59     29      9
  DEL PEAK 41(15Q11.2) WILD-TYPE     67     79    170     66     58
D80V6, multiclass
        clus
vv       DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE
  CLUS_1                           60                             67
  CLUS_2                           26                             79
  CLUS_3                           59                            170
  CLUS_4                           29                             66
  CLUS_5                            9                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(15Q11.2) MUTATED       50     68     41
  DEL PEAK 41(15Q11.2) WILD-TYPE     94    141    130
D80V7, multiclass
        clus
vv       DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE
  CLUS_1                           50                             94
  CLUS_2                           68                            141
  CLUS_3                           41                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(15Q11.2) MUTATED       20     40     49     21     29
  DEL PEAK 41(15Q11.2) WILD-TYPE     27     82    113     80     63
D80V8, multiclass
        clus
vv       DEL PEAK 41(15Q11.2) MUTATED DEL PEAK 41(15Q11.2) WILD-TYPE
  CLUS_1                           20                             27
  CLUS_2                           40                             82
  CLUS_3                           49                            113
  CLUS_4                           21                             80
  CLUS_5                           29                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 42(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(16P13.3) MUTATED       87     67     24
  DEL PEAK 42(16P13.3) WILD-TYPE     79    143    225
D81V1, multiclass
        clus
vv       DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE
  CLUS_1                           87                             79
  CLUS_2                           67                            143
  CLUS_3                           24                            225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(16P13.3) MUTATED       75     57     35
  DEL PEAK 42(16P13.3) WILD-TYPE    173    100    137
D81V2, multiclass
        clus
vv       DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE
  CLUS_1                           75                            173
  CLUS_2                           57                            100
  CLUS_3                           35                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(16P13.3) MUTATED       61     41     16
  DEL PEAK 42(16P13.3) WILD-TYPE    173     88     76
D81V3, multiclass
        clus
vv       DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE
  CLUS_1                           61                            173
  CLUS_2                           41                             88
  CLUS_3                           16                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(16P13.3) MUTATED       40     34     12     16     16
  DEL PEAK 42(16P13.3) WILD-TYPE     35    116     13     73    100
D81V4, multiclass
        clus
vv       DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE
  CLUS_1                           40                             35
  CLUS_2                           34                            116
  CLUS_3                           12                             13
  CLUS_4                           16                             73
  CLUS_5                           16                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(16P13.3) MUTATED       60     93     24
  DEL PEAK 42(16P13.3) WILD-TYPE    104    235    107
D81V5, multiclass
        clus
vv       DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE
  CLUS_1                           60                            104
  CLUS_2                           93                            235
  CLUS_3                           24                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(16P13.3) MUTATED       65     28     58     18      8
  DEL PEAK 42(16P13.3) WILD-TYPE     62     77    171     77     59
D81V6, multiclass
        clus
vv       DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE
  CLUS_1                           65                             62
  CLUS_2                           28                             77
  CLUS_3                           58                            171
  CLUS_4                           18                             77
  CLUS_5                            8                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(16P13.3) MUTATED       57     60     37
  DEL PEAK 42(16P13.3) WILD-TYPE     87    149    134
D81V7, multiclass
        clus
vv       DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE
  CLUS_1                           57                             87
  CLUS_2                           60                            149
  CLUS_3                           37                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(16P13.3) MUTATED       32     45     39     20     18
  DEL PEAK 42(16P13.3) WILD-TYPE     15     77    123     81     74
D81V8, multiclass
        clus
vv       DEL PEAK 42(16P13.3) MUTATED DEL PEAK 42(16P13.3) WILD-TYPE
  CLUS_1                           32                             15
  CLUS_2                           45                             77
  CLUS_3                           39                            123
  CLUS_4                           20                             81
  CLUS_5                           18                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 43(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(16P13.3) MUTATED       69     59     20
  DEL PEAK 43(16P13.3) WILD-TYPE     97    151    229
D82V1, multiclass
        clus
vv       DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE
  CLUS_1                           69                             97
  CLUS_2                           59                            151
  CLUS_3                           20                            229
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(16P13.3) MUTATED       58     50     31
  DEL PEAK 43(16P13.3) WILD-TYPE    190    107    141
D82V2, multiclass
        clus
vv       DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE
  CLUS_1                           58                            190
  CLUS_2                           50                            107
  CLUS_3                           31                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(16P13.3) MUTATED       55     34     16
  DEL PEAK 43(16P13.3) WILD-TYPE    179     95     76
D82V3, multiclass
        clus
vv       DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE
  CLUS_1                           55                            179
  CLUS_2                           34                             95
  CLUS_3                           16                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(16P13.3) MUTATED       38     30      9     13     15
  DEL PEAK 43(16P13.3) WILD-TYPE     37    120     16     76    101
D82V4, multiclass
        clus
vv       DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE
  CLUS_1                           38                             37
  CLUS_2                           30                            120
  CLUS_3                            9                             16
  CLUS_4                           13                             76
  CLUS_5                           15                            101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(16P13.3) MUTATED       56     72     19
  DEL PEAK 43(16P13.3) WILD-TYPE    108    256    112
D82V5, multiclass
        clus
vv       DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE
  CLUS_1                           56                            108
  CLUS_2                           72                            256
  CLUS_3                           19                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(16P13.3) MUTATED       60     20     44     15      8
  DEL PEAK 43(16P13.3) WILD-TYPE     67     85    185     80     59
D82V6, multiclass
        clus
vv       DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE
  CLUS_1                           60                             67
  CLUS_2                           20                             85
  CLUS_3                           44                            185
  CLUS_4                           15                             80
  CLUS_5                            8                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(16P13.3) MUTATED       49     49     29
  DEL PEAK 43(16P13.3) WILD-TYPE     95    160    142
D82V7, multiclass
        clus
vv       DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE
  CLUS_1                           49                             95
  CLUS_2                           49                            160
  CLUS_3                           29                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(16P13.3) MUTATED       30     39     27     16     15
  DEL PEAK 43(16P13.3) WILD-TYPE     17     83    135     85     77
D82V8, multiclass
        clus
vv       DEL PEAK 43(16P13.3) MUTATED DEL PEAK 43(16P13.3) WILD-TYPE
  CLUS_1                           30                             17
  CLUS_2                           39                             83
  CLUS_3                           27                            135
  CLUS_4                           16                             85
  CLUS_5                           15                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 44(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(16Q23.1) MUTATED      109     91     65
  DEL PEAK 44(16Q23.1) WILD-TYPE     57    119    184
D83V1, multiclass
        clus
vv       DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE
  CLUS_1                          109                             57
  CLUS_2                           91                            119
  CLUS_3                           65                            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(16Q23.1) MUTATED      125     65     55
  DEL PEAK 44(16Q23.1) WILD-TYPE    123     92    117
D83V2, multiclass
        clus
vv       DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE
  CLUS_1                          125                            123
  CLUS_2                           65                             92
  CLUS_3                           55                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(16Q23.1) MUTATED      107     49     32
  DEL PEAK 44(16Q23.1) WILD-TYPE    127     80     60
D83V3, multiclass
        clus
vv       DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE
  CLUS_1                          107                            127
  CLUS_2                           49                             80
  CLUS_3                           32                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(16Q23.1) MUTATED       50     63     15     19     41
  DEL PEAK 44(16Q23.1) WILD-TYPE     25     87     10     70     75
D83V4, multiclass
        clus
vv       DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE
  CLUS_1                           50                             25
  CLUS_2                           63                             87
  CLUS_3                           15                             10
  CLUS_4                           19                             70
  CLUS_5                           41                             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(16Q23.1) MUTATED       68    156     40
  DEL PEAK 44(16Q23.1) WILD-TYPE     96    172     91
D83V5, multiclass
        clus
vv       DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE
  CLUS_1                           68                             96
  CLUS_2                          156                            172
  CLUS_3                           40                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(16Q23.1) MUTATED       74     51     97     21     21
  DEL PEAK 44(16Q23.1) WILD-TYPE     53     54    132     74     46
D83V6, multiclass
        clus
vv       DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE
  CLUS_1                           74                             53
  CLUS_2                           51                             54
  CLUS_3                           97                            132
  CLUS_4                           21                             74
  CLUS_5                           21                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(16Q23.1) MUTATED       64    100     56
  DEL PEAK 44(16Q23.1) WILD-TYPE     80    109    115
D83V7, multiclass
        clus
vv       DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE
  CLUS_1                           64                             80
  CLUS_2                          100                            109
  CLUS_3                           56                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(16Q23.1) MUTATED       32     67     65     35     21
  DEL PEAK 44(16Q23.1) WILD-TYPE     15     55     97     66     71
D83V8, multiclass
        clus
vv       DEL PEAK 44(16Q23.1) MUTATED DEL PEAK 44(16Q23.1) WILD-TYPE
  CLUS_1                           32                             15
  CLUS_2                           67                             55
  CLUS_3                           65                             97
  CLUS_4                           35                             66
  CLUS_5                           21                             71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 45(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(17P12) MUTATED      121    103     43
  DEL PEAK 45(17P12) WILD-TYPE     45    107    206
D84V1, multiclass
        clus
vv       DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE
  CLUS_1                        121                           45
  CLUS_2                        103                          107
  CLUS_3                         43                          206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(17P12) MUTATED      120     80     51
  DEL PEAK 45(17P12) WILD-TYPE    128     77    121
D84V2, multiclass
        clus
vv       DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE
  CLUS_1                        120                          128
  CLUS_2                         80                           77
  CLUS_3                         51                          121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(17P12) MUTATED      110     50     24
  DEL PEAK 45(17P12) WILD-TYPE    124     79     68
D84V3, multiclass
        clus
vv       DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE
  CLUS_1                        110                          124
  CLUS_2                         50                           79
  CLUS_3                         24                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(17P12) MUTATED       51     62     15     27     29
  DEL PEAK 45(17P12) WILD-TYPE     24     88     10     62     87
D84V4, multiclass
        clus
vv       DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE
  CLUS_1                         51                           24
  CLUS_2                         62                           88
  CLUS_3                         15                           10
  CLUS_4                         27                           62
  CLUS_5                         29                           87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(17P12) MUTATED       74    155     37
  DEL PEAK 45(17P12) WILD-TYPE     90    173     94
D84V5, multiclass
        clus
vv       DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE
  CLUS_1                         74                           90
  CLUS_2                        155                          173
  CLUS_3                         37                           94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(17P12) MUTATED       87     46     92     27     14
  DEL PEAK 45(17P12) WILD-TYPE     40     59    137     68     53
D84V6, multiclass
        clus
vv       DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE
  CLUS_1                         87                           40
  CLUS_2                         46                           59
  CLUS_3                         92                          137
  CLUS_4                         27                           68
  CLUS_5                         14                           53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(17P12) MUTATED       69     97     62
  DEL PEAK 45(17P12) WILD-TYPE     75    112    109
D84V7, multiclass
        clus
vv       DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE
  CLUS_1                         69                           75
  CLUS_2                         97                          112
  CLUS_3                         62                          109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(17P12) MUTATED       33     70     67     30     28
  DEL PEAK 45(17P12) WILD-TYPE     14     52     95     71     64
D84V8, multiclass
        clus
vv       DEL PEAK 45(17P12) MUTATED DEL PEAK 45(17P12) WILD-TYPE
  CLUS_1                         33                           14
  CLUS_2                         70                           52
  CLUS_3                         67                           95
  CLUS_4                         30                           71
  CLUS_5                         28                           64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 46(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(17Q24.3) MUTATED       48     36     19
  DEL PEAK 46(17Q24.3) WILD-TYPE    118    174    230
D85V1, multiclass
        clus
vv       DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE
  CLUS_1                           48                            118
  CLUS_2                           36                            174
  CLUS_3                           19                            230
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(17Q24.3) MUTATED       41     31     19
  DEL PEAK 46(17Q24.3) WILD-TYPE    207    126    153
D85V2, multiclass
        clus
vv       DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE
  CLUS_1                           41                            207
  CLUS_2                           31                            126
  CLUS_3                           19                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(17Q24.3) MUTATED       41     21      9
  DEL PEAK 46(17Q24.3) WILD-TYPE    193    108     83
D85V3, multiclass
        clus
vv       DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE
  CLUS_1                           41                            193
  CLUS_2                           21                            108
  CLUS_3                            9                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(17Q24.3) MUTATED       22     21      4     13     11
  DEL PEAK 46(17Q24.3) WILD-TYPE     53    129     21     76    105
D85V4, multiclass
        clus
vv       DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE
  CLUS_1                           22                             53
  CLUS_2                           21                            129
  CLUS_3                            4                             21
  CLUS_4                           13                             76
  CLUS_5                           11                            105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(17Q24.3) MUTATED       23     65     14
  DEL PEAK 46(17Q24.3) WILD-TYPE    141    263    117
D85V5, multiclass
        clus
vv       DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE
  CLUS_1                           23                            141
  CLUS_2                           65                            263
  CLUS_3                           14                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(17Q24.3) MUTATED       31     19     29     15      8
  DEL PEAK 46(17Q24.3) WILD-TYPE     96     86    200     80     59
D85V6, multiclass
        clus
vv       DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE
  CLUS_1                           31                             96
  CLUS_2                           19                             86
  CLUS_3                           29                            200
  CLUS_4                           15                             80
  CLUS_5                            8                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(17Q24.3) MUTATED       23     35     23
  DEL PEAK 46(17Q24.3) WILD-TYPE    121    174    148
D85V7, multiclass
        clus
vv       DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE
  CLUS_1                           23                            121
  CLUS_2                           35                            174
  CLUS_3                           23                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(17Q24.3) MUTATED       11     19     22     15     14
  DEL PEAK 46(17Q24.3) WILD-TYPE     36    103    140     86     78
D85V8, multiclass
        clus
vv       DEL PEAK 46(17Q24.3) MUTATED DEL PEAK 46(17Q24.3) WILD-TYPE
  CLUS_1                           11                             36
  CLUS_2                           19                            103
  CLUS_3                           22                            140
  CLUS_4                           15                             86
  CLUS_5                           14                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 47(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(18Q12.2) MUTATED      107    132     53
  DEL PEAK 47(18Q12.2) WILD-TYPE     59     78    196
D86V1, multiclass
        clus
vv       DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE
  CLUS_1                          107                             59
  CLUS_2                          132                             78
  CLUS_3                           53                            196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(18Q12.2) MUTATED      119     88     63
  DEL PEAK 47(18Q12.2) WILD-TYPE    129     69    109
D86V2, multiclass
        clus
vv       DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE
  CLUS_1                          119                            129
  CLUS_2                           88                             69
  CLUS_3                           63                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(18Q12.2) MUTATED      113     67     34
  DEL PEAK 47(18Q12.2) WILD-TYPE    121     62     58
D86V3, multiclass
        clus
vv       DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE
  CLUS_1                          113                            121
  CLUS_2                           67                             62
  CLUS_3                           34                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(18Q12.2) MUTATED       40     62     16     47     49
  DEL PEAK 47(18Q12.2) WILD-TYPE     35     88      9     42     67
D86V4, multiclass
        clus
vv       DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE
  CLUS_1                           40                             35
  CLUS_2                           62                             88
  CLUS_3                           16                              9
  CLUS_4                           47                             42
  CLUS_5                           49                             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(18Q12.2) MUTATED       86    157     49
  DEL PEAK 47(18Q12.2) WILD-TYPE     78    171     82
D86V5, multiclass
        clus
vv       DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE
  CLUS_1                           86                             78
  CLUS_2                          157                            171
  CLUS_3                           49                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(18Q12.2) MUTATED       75     41    100     52     24
  DEL PEAK 47(18Q12.2) WILD-TYPE     52     64    129     43     43
D86V6, multiclass
        clus
vv       DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE
  CLUS_1                           75                             52
  CLUS_2                           41                             64
  CLUS_3                          100                            129
  CLUS_4                           52                             43
  CLUS_5                           24                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(18Q12.2) MUTATED       78     97     72
  DEL PEAK 47(18Q12.2) WILD-TYPE     66    112     99
D86V7, multiclass
        clus
vv       DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE
  CLUS_1                           78                             66
  CLUS_2                           97                            112
  CLUS_3                           72                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(18Q12.2) MUTATED       28     61     72     36     50
  DEL PEAK 47(18Q12.2) WILD-TYPE     19     61     90     65     42
D86V8, multiclass
        clus
vv       DEL PEAK 47(18Q12.2) MUTATED DEL PEAK 47(18Q12.2) WILD-TYPE
  CLUS_1                           28                             19
  CLUS_2                           61                             61
  CLUS_3                           72                             90
  CLUS_4                           36                             65
  CLUS_5                           50                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 48(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(18Q21.2) MUTATED      116    145     62
  DEL PEAK 48(18Q21.2) WILD-TYPE     50     65    187
D87V1, multiclass
        clus
vv       DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE
  CLUS_1                          116                             50
  CLUS_2                          145                             65
  CLUS_3                           62                            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(18Q21.2) MUTATED      138     94     69
  DEL PEAK 48(18Q21.2) WILD-TYPE    110     63    103
D87V2, multiclass
        clus
vv       DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE
  CLUS_1                          138                            110
  CLUS_2                           94                             63
  CLUS_3                           69                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(18Q21.2) MUTATED      128     72     38
  DEL PEAK 48(18Q21.2) WILD-TYPE    106     57     54
D87V3, multiclass
        clus
vv       DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE
  CLUS_1                          128                            106
  CLUS_2                           72                             57
  CLUS_3                           38                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(18Q21.2) MUTATED       46     73     18     49     52
  DEL PEAK 48(18Q21.2) WILD-TYPE     29     77      7     40     64
D87V4, multiclass
        clus
vv       DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE
  CLUS_1                           46                             29
  CLUS_2                           73                             77
  CLUS_3                           18                              7
  CLUS_4                           49                             40
  CLUS_5                           52                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(18Q21.2) MUTATED       91    179     53
  DEL PEAK 48(18Q21.2) WILD-TYPE     73    149     78
D87V5, multiclass
        clus
vv       DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE
  CLUS_1                           91                             73
  CLUS_2                          179                            149
  CLUS_3                           53                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(18Q21.2) MUTATED       81     50    111     55     26
  DEL PEAK 48(18Q21.2) WILD-TYPE     46     55    118     40     41
D87V6, multiclass
        clus
vv       DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE
  CLUS_1                           81                             46
  CLUS_2                           50                             55
  CLUS_3                          111                            118
  CLUS_4                           55                             40
  CLUS_5                           26                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(18Q21.2) MUTATED       81    113     78
  DEL PEAK 48(18Q21.2) WILD-TYPE     63     96     93
D87V7, multiclass
        clus
vv       DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE
  CLUS_1                           81                             63
  CLUS_2                          113                             96
  CLUS_3                           78                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(18Q21.2) MUTATED       27     72     79     41     53
  DEL PEAK 48(18Q21.2) WILD-TYPE     20     50     83     60     39
D87V8, multiclass
        clus
vv       DEL PEAK 48(18Q21.2) MUTATED DEL PEAK 48(18Q21.2) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                           72                             50
  CLUS_3                           79                             83
  CLUS_4                           41                             60
  CLUS_5                           53                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 49(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(19P13.3) MUTATED      111    113     25
  DEL PEAK 49(19P13.3) WILD-TYPE     55     97    224
D88V1, multiclass
        clus
vv       DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                          111                             55
  CLUS_2                          113                             97
  CLUS_3                           25                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(19P13.3) MUTATED       92     96     45
  DEL PEAK 49(19P13.3) WILD-TYPE    156     61    127
D88V2, multiclass
        clus
vv       DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                           92                            156
  CLUS_2                           96                             61
  CLUS_3                           45                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(19P13.3) MUTATED       94     64     14
  DEL PEAK 49(19P13.3) WILD-TYPE    140     65     78
D88V3, multiclass
        clus
vv       DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                           94                            140
  CLUS_2                           64                             65
  CLUS_3                           14                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(19P13.3) MUTATED       55     50     12     38     17
  DEL PEAK 49(19P13.3) WILD-TYPE     20    100     13     51     99
D88V4, multiclass
        clus
vv       DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                           55                             20
  CLUS_2                           50                            100
  CLUS_3                           12                             13
  CLUS_4                           38                             51
  CLUS_5                           17                             99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(19P13.3) MUTATED       96    125     27
  DEL PEAK 49(19P13.3) WILD-TYPE     68    203    104
D88V5, multiclass
        clus
vv       DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                           96                             68
  CLUS_2                          125                            203
  CLUS_3                           27                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(19P13.3) MUTATED      100     35     63     43      7
  DEL PEAK 49(19P13.3) WILD-TYPE     27     70    166     52     60
D88V6, multiclass
        clus
vv       DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                          100                             27
  CLUS_2                           35                             70
  CLUS_3                           63                            166
  CLUS_4                           43                             52
  CLUS_5                            7                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(19P13.3) MUTATED       89     81     44
  DEL PEAK 49(19P13.3) WILD-TYPE     55    128    127
D88V7, multiclass
        clus
vv       DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                           89                             55
  CLUS_2                           81                            128
  CLUS_3                           44                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(19P13.3) MUTATED       37     65     46     24     42
  DEL PEAK 49(19P13.3) WILD-TYPE     10     57    116     77     50
D88V8, multiclass
        clus
vv       DEL PEAK 49(19P13.3) MUTATED DEL PEAK 49(19P13.3) WILD-TYPE
  CLUS_1                           37                             10
  CLUS_2                           65                             57
  CLUS_3                           46                            116
  CLUS_4                           24                             77
  CLUS_5                           42                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = DEL PEAK 50(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(19Q13.11) MUTATED       58     51     11
  DEL PEAK 50(19Q13.11) WILD-TYPE    108    159    238
D89V1, multiclass
        clus
vv       DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE
  CLUS_1                            58                             108
  CLUS_2                            51                             159
  CLUS_3                            11                             238
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(19Q13.11) MUTATED       38     63     12
  DEL PEAK 50(19Q13.11) WILD-TYPE    210     94    160
D89V2, multiclass
        clus
vv       DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE
  CLUS_1                            38                             210
  CLUS_2                            63                              94
  CLUS_3                            12                             160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(19Q13.11) MUTATED       40     35      8
  DEL PEAK 50(19Q13.11) WILD-TYPE    194     94     84
D89V3, multiclass
        clus
vv       DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE
  CLUS_1                            40                             194
  CLUS_2                            35                              94
  CLUS_3                             8                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(19Q13.11) MUTATED       27     24      1     24      7
  DEL PEAK 50(19Q13.11) WILD-TYPE     48    126     24     65    109
D89V4, multiclass
        clus
vv       DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE
  CLUS_1                            27                              48
  CLUS_2                            24                             126
  CLUS_3                             1                              24
  CLUS_4                            24                              65
  CLUS_5                             7                             109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(19Q13.11) MUTATED       52     54     13
  DEL PEAK 50(19Q13.11) WILD-TYPE    112    274    118
D89V5, multiclass
        clus
vv       DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE
  CLUS_1                            52                             112
  CLUS_2                            54                             274
  CLUS_3                            13                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(19Q13.11) MUTATED       47     19     24     27      2
  DEL PEAK 50(19Q13.11) WILD-TYPE     80     86    205     68     65
D89V6, multiclass
        clus
vv       DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE
  CLUS_1                            47                              80
  CLUS_2                            19                              86
  CLUS_3                            24                             205
  CLUS_4                            27                              68
  CLUS_5                             2                              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(19Q13.11) MUTATED       46     38     20
  DEL PEAK 50(19Q13.11) WILD-TYPE     98    171    151
D89V7, multiclass
        clus
vv       DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE
  CLUS_1                            46                              98
  CLUS_2                            38                             171
  CLUS_3                            20                             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(19Q13.11) MUTATED       16     28     19     14     27
  DEL PEAK 50(19Q13.11) WILD-TYPE     31     94    143     87     65
D89V8, multiclass
        clus
vv       DEL PEAK 50(19Q13.11) MUTATED DEL PEAK 50(19Q13.11) WILD-TYPE
  CLUS_1                            16                              31
  CLUS_2                            28                              94
  CLUS_3                            19                             143
  CLUS_4                            14                              87
  CLUS_5                            27                              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = DEL PEAK 51(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(20P12.1) MUTATED       19     39     14
  DEL PEAK 51(20P12.1) WILD-TYPE    147    171    235
D90V1, multiclass
        clus
vv       DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE
  CLUS_1                           19                            147
  CLUS_2                           39                            171
  CLUS_3                           14                            235
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(20P12.1) MUTATED       28     28     14
  DEL PEAK 51(20P12.1) WILD-TYPE    220    129    158
D90V2, multiclass
        clus
vv       DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE
  CLUS_1                           28                            220
  CLUS_2                           28                            129
  CLUS_3                           14                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(20P12.1) MUTATED       30     18      7
  DEL PEAK 51(20P12.1) WILD-TYPE    204    111     85
D90V3, multiclass
        clus
vv       DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE
  CLUS_1                           30                            204
  CLUS_2                           18                            111
  CLUS_3                            7                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(20P12.1) MUTATED       15     19      4      9      8
  DEL PEAK 51(20P12.1) WILD-TYPE     60    131     21     80    108
D90V4, multiclass
        clus
vv       DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE
  CLUS_1                           15                             60
  CLUS_2                           19                            131
  CLUS_3                            4                             21
  CLUS_4                            9                             80
  CLUS_5                            8                            108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(20P12.1) MUTATED       23     37     12
  DEL PEAK 51(20P12.1) WILD-TYPE    141    291    119
D90V5, multiclass
        clus
vv       DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE
  CLUS_1                           23                            141
  CLUS_2                           37                            291
  CLUS_3                           12                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(20P12.1) MUTATED       26      9     23     12      2
  DEL PEAK 51(20P12.1) WILD-TYPE    101     96    206     83     65
D90V6, multiclass
        clus
vv       DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE
  CLUS_1                           26                            101
  CLUS_2                            9                             96
  CLUS_3                           23                            206
  CLUS_4                           12                             83
  CLUS_5                            2                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(20P12.1) MUTATED       24     24     18
  DEL PEAK 51(20P12.1) WILD-TYPE    120    185    153
D90V7, multiclass
        clus
vv       DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE
  CLUS_1                           24                            120
  CLUS_2                           24                            185
  CLUS_3                           18                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(20P12.1) MUTATED        6     21     18      9     12
  DEL PEAK 51(20P12.1) WILD-TYPE     41    101    144     92     80
D90V8, multiclass
        clus
vv       DEL PEAK 51(20P12.1) MUTATED DEL PEAK 51(20P12.1) WILD-TYPE
  CLUS_1                            6                             41
  CLUS_2                           21                            101
  CLUS_3                           18                            144
  CLUS_4                            9                             92
  CLUS_5                           12                             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = DEL PEAK 52(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(21Q11.2) MUTATED      103    125     62
  DEL PEAK 52(21Q11.2) WILD-TYPE     63     85    187
D91V1, multiclass
        clus
vv       DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE
  CLUS_1                          103                             63
  CLUS_2                          125                             85
  CLUS_3                           62                            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(21Q11.2) MUTATED      121     87     67
  DEL PEAK 52(21Q11.2) WILD-TYPE    127     70    105
D91V2, multiclass
        clus
vv       DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE
  CLUS_1                          121                            127
  CLUS_2                           87                             70
  CLUS_3                           67                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(21Q11.2) MUTATED       96     75     29
  DEL PEAK 52(21Q11.2) WILD-TYPE    138     54     63
D91V3, multiclass
        clus
vv       DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE
  CLUS_1                           96                            138
  CLUS_2                           75                             54
  CLUS_3                           29                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(21Q11.2) MUTATED       48     53     18     48     33
  DEL PEAK 52(21Q11.2) WILD-TYPE     27     97      7     41     83
D91V4, multiclass
        clus
vv       DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE
  CLUS_1                           48                             27
  CLUS_2                           53                             97
  CLUS_3                           18                              7
  CLUS_4                           48                             41
  CLUS_5                           33                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(21Q11.2) MUTATED       95    150     45
  DEL PEAK 52(21Q11.2) WILD-TYPE     69    178     86
D91V5, multiclass
        clus
vv       DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE
  CLUS_1                           95                             69
  CLUS_2                          150                            178
  CLUS_3                           45                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(21Q11.2) MUTATED       77     35    105     52     21
  DEL PEAK 52(21Q11.2) WILD-TYPE     50     70    124     43     46
D91V6, multiclass
        clus
vv       DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE
  CLUS_1                           77                             50
  CLUS_2                           35                             70
  CLUS_3                          105                            124
  CLUS_4                           52                             43
  CLUS_5                           21                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(21Q11.2) MUTATED       85     98     69
  DEL PEAK 52(21Q11.2) WILD-TYPE     59    111    102
D91V7, multiclass
        clus
vv       DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE
  CLUS_1                           85                             59
  CLUS_2                           98                            111
  CLUS_3                           69                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(21Q11.2) MUTATED       31     66     62     42     51
  DEL PEAK 52(21Q11.2) WILD-TYPE     16     56    100     59     41
D91V8, multiclass
        clus
vv       DEL PEAK 52(21Q11.2) MUTATED DEL PEAK 52(21Q11.2) WILD-TYPE
  CLUS_1                           31                             16
  CLUS_2                           66                             56
  CLUS_3                           62                            100
  CLUS_4                           42                             59
  CLUS_5                           51                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = DEL PEAK 53(21Q22.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(21Q22.13) MUTATED      104    136     65
  DEL PEAK 53(21Q22.13) WILD-TYPE     62     74    184
D92V1, multiclass
        clus
vv       DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE
  CLUS_1                           104                              62
  CLUS_2                           136                              74
  CLUS_3                            65                             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(21Q22.13) MUTATED      132     84     70
  DEL PEAK 53(21Q22.13) WILD-TYPE    116     73    102
D92V2, multiclass
        clus
vv       DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE
  CLUS_1                           132                             116
  CLUS_2                            84                              73
  CLUS_3                            70                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(21Q22.13) MUTATED      101     76     32
  DEL PEAK 53(21Q22.13) WILD-TYPE    133     53     60
D92V3, multiclass
        clus
vv       DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE
  CLUS_1                           101                             133
  CLUS_2                            76                              53
  CLUS_3                            32                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 53(21Q22.13) MUTATED       46     59     18     48     38
  DEL PEAK 53(21Q22.13) WILD-TYPE     29     91      7     41     78
D92V4, multiclass
        clus
vv       DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE
  CLUS_1                            46                              29
  CLUS_2                            59                              91
  CLUS_3                            18                               7
  CLUS_4                            48                              41
  CLUS_5                            38                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(21Q22.13) MUTATED       93    165     47
  DEL PEAK 53(21Q22.13) WILD-TYPE     71    163     84
D92V5, multiclass
        clus
vv       DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE
  CLUS_1                            93                              71
  CLUS_2                           165                             163
  CLUS_3                            47                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 53(21Q22.13) MUTATED       77     42    112     52     22
  DEL PEAK 53(21Q22.13) WILD-TYPE     50     63    117     43     45
D92V6, multiclass
        clus
vv       DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE
  CLUS_1                            77                              50
  CLUS_2                            42                              63
  CLUS_3                           112                             117
  CLUS_4                            52                              43
  CLUS_5                            22                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 53(21Q22.13) MUTATED       88    103     72
  DEL PEAK 53(21Q22.13) WILD-TYPE     56    106     99
D92V7, multiclass
        clus
vv       DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE
  CLUS_1                            88                              56
  CLUS_2                           103                             106
  CLUS_3                            72                              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 53(21Q22.13) MUTATED       29     71     70     42     51
  DEL PEAK 53(21Q22.13) WILD-TYPE     18     51     92     59     41
D92V8, multiclass
        clus
vv       DEL PEAK 53(21Q22.13) MUTATED DEL PEAK 53(21Q22.13) WILD-TYPE
  CLUS_1                            29                              18
  CLUS_2                            71                              51
  CLUS_3                            70                              92
  CLUS_4                            42                              59
  CLUS_5                            51                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = DEL PEAK 54(22Q11.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 54(22Q11.1) MUTATED      101     97     32
  DEL PEAK 54(22Q11.1) WILD-TYPE     65    113    217
D93V1, multiclass
        clus
vv       DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE
  CLUS_1                          101                             65
  CLUS_2                           97                            113
  CLUS_3                           32                            217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 54(22Q11.1) MUTATED       99     67     47
  DEL PEAK 54(22Q11.1) WILD-TYPE    149     90    125
D93V2, multiclass
        clus
vv       DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE
  CLUS_1                           99                            149
  CLUS_2                           67                             90
  CLUS_3                           47                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 54(22Q11.1) MUTATED       92     46     25
  DEL PEAK 54(22Q11.1) WILD-TYPE    142     83     67
D93V3, multiclass
        clus
vv       DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE
  CLUS_1                           92                            142
  CLUS_2                           46                             83
  CLUS_3                           25                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 54(22Q11.1) MUTATED       46     55     12     23     27
  DEL PEAK 54(22Q11.1) WILD-TYPE     29     95     13     66     89
D93V4, multiclass
        clus
vv       DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE
  CLUS_1                           46                             29
  CLUS_2                           55                             95
  CLUS_3                           12                             13
  CLUS_4                           23                             66
  CLUS_5                           27                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 54(22Q11.1) MUTATED       66    132     31
  DEL PEAK 54(22Q11.1) WILD-TYPE     98    196    100
D93V5, multiclass
        clus
vv       DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE
  CLUS_1                           66                             98
  CLUS_2                          132                            196
  CLUS_3                           31                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 54(22Q11.1) MUTATED       77     37     75     25     15
  DEL PEAK 54(22Q11.1) WILD-TYPE     50     68    154     70     52
D93V6, multiclass
        clus
vv       DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE
  CLUS_1                           77                             50
  CLUS_2                           37                             68
  CLUS_3                           75                            154
  CLUS_4                           25                             70
  CLUS_5                           15                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 54(22Q11.1) MUTATED       58     83     51
  DEL PEAK 54(22Q11.1) WILD-TYPE     86    126    120
D93V7, multiclass
        clus
vv       DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE
  CLUS_1                           58                             86
  CLUS_2                           83                            126
  CLUS_3                           51                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 54(22Q11.1) MUTATED       27     60     50     31     24
  DEL PEAK 54(22Q11.1) WILD-TYPE     20     62    112     70     68
D93V8, multiclass
        clus
vv       DEL PEAK 54(22Q11.1) MUTATED DEL PEAK 54(22Q11.1) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                           60                             62
  CLUS_3                           50                            112
  CLUS_4                           31                             70
  CLUS_5                           24                             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = DEL PEAK 55(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 55(22Q13.31) MUTATED       96    106     33
  DEL PEAK 55(22Q13.31) WILD-TYPE     70    104    216
D94V1, multiclass
        clus
vv       DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE
  CLUS_1                            96                              70
  CLUS_2                           106                             104
  CLUS_3                            33                             216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 55(22Q13.31) MUTATED       98     72     48
  DEL PEAK 55(22Q13.31) WILD-TYPE    150     85    124
D94V2, multiclass
        clus
vv       DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE
  CLUS_1                            98                             150
  CLUS_2                            72                              85
  CLUS_3                            48                             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 55(22Q13.31) MUTATED       93     46     26
  DEL PEAK 55(22Q13.31) WILD-TYPE    141     83     66
D94V3, multiclass
        clus
vv       DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE
  CLUS_1                            93                             141
  CLUS_2                            46                              83
  CLUS_3                            26                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 55(22Q13.31) MUTATED       46     55     11     24     29
  DEL PEAK 55(22Q13.31) WILD-TYPE     29     95     14     65     87
D94V4, multiclass
        clus
vv       DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE
  CLUS_1                            46                              29
  CLUS_2                            55                              95
  CLUS_3                            11                              14
  CLUS_4                            24                              65
  CLUS_5                            29                              87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 55(22Q13.31) MUTATED       67    138     29
  DEL PEAK 55(22Q13.31) WILD-TYPE     97    190    102
D94V5, multiclass
        clus
vv       DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE
  CLUS_1                            67                              97
  CLUS_2                           138                             190
  CLUS_3                            29                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 55(22Q13.31) MUTATED       78     38     76     27     15
  DEL PEAK 55(22Q13.31) WILD-TYPE     49     67    153     68     52
D94V6, multiclass
        clus
vv       DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE
  CLUS_1                            78                              49
  CLUS_2                            38                              67
  CLUS_3                            76                             153
  CLUS_4                            27                              68
  CLUS_5                            15                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 55(22Q13.31) MUTATED       61     89     52
  DEL PEAK 55(22Q13.31) WILD-TYPE     83    120    119
D94V7, multiclass
        clus
vv       DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE
  CLUS_1                            61                              83
  CLUS_2                            89                             120
  CLUS_3                            52                             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 55(22Q13.31) MUTATED       29     62     54     31     26
  DEL PEAK 55(22Q13.31) WILD-TYPE     18     60    108     70     66
D94V8, multiclass
        clus
vv       DEL PEAK 55(22Q13.31) MUTATED DEL PEAK 55(22Q13.31) WILD-TYPE
  CLUS_1                            29                              18
  CLUS_2                            62                              60
  CLUS_3                            54                             108
  CLUS_4                            31                              70
  CLUS_5                            26                              66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = DEL PEAK 56(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 56(XP22.2) MUTATED       51     81     18
  DEL PEAK 56(XP22.2) WILD-TYPE    115    129    231
D95V1, multiclass
        clus
vv       DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE
  CLUS_1                          51                           115
  CLUS_2                          81                           129
  CLUS_3                          18                           231
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 56(XP22.2) MUTATED       57     60     27
  DEL PEAK 56(XP22.2) WILD-TYPE    191     97    145
D95V2, multiclass
        clus
vv       DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE
  CLUS_1                          57                           191
  CLUS_2                          60                            97
  CLUS_3                          27                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 56(XP22.2) MUTATED       55     48     13
  DEL PEAK 56(XP22.2) WILD-TYPE    179     81     79
D95V3, multiclass
        clus
vv       DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE
  CLUS_1                          55                           179
  CLUS_2                          48                            81
  CLUS_3                          13                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 56(XP22.2) MUTATED       25     32      8     36     15
  DEL PEAK 56(XP22.2) WILD-TYPE     50    118     17     53    101
D95V4, multiclass
        clus
vv       DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE
  CLUS_1                          25                            50
  CLUS_2                          32                           118
  CLUS_3                           8                            17
  CLUS_4                          36                            53
  CLUS_5                          15                           101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 56(XP22.2) MUTATED       60     73     17
  DEL PEAK 56(XP22.2) WILD-TYPE    104    255    114
D95V5, multiclass
        clus
vv       DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE
  CLUS_1                          60                           104
  CLUS_2                          73                           255
  CLUS_3                          17                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 56(XP22.2) MUTATED       43     18     43     39      7
  DEL PEAK 56(XP22.2) WILD-TYPE     84     87    186     56     60
D95V6, multiclass
        clus
vv       DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE
  CLUS_1                          43                            84
  CLUS_2                          18                            87
  CLUS_3                          43                           186
  CLUS_4                          39                            56
  CLUS_5                           7                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 56(XP22.2) MUTATED       48     53     37
  DEL PEAK 56(XP22.2) WILD-TYPE     96    156    134
D95V7, multiclass
        clus
vv       DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE
  CLUS_1                          48                            96
  CLUS_2                          53                           156
  CLUS_3                          37                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 56(XP22.2) MUTATED       14     33     33     19     39
  DEL PEAK 56(XP22.2) WILD-TYPE     33     89    129     82     53
D95V8, multiclass
        clus
vv       DEL PEAK 56(XP22.2) MUTATED DEL PEAK 56(XP22.2) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                          33                            89
  CLUS_3                          33                           129
  CLUS_4                          19                            82
  CLUS_5                          39                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = DEL PEAK 57(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 57(XP21.1) MUTATED       47     83     13
  DEL PEAK 57(XP21.1) WILD-TYPE    119    127    236
D96V1, multiclass
        clus
vv       DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE
  CLUS_1                          47                           119
  CLUS_2                          83                           127
  CLUS_3                          13                           236
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 57(XP21.1) MUTATED       54     57     24
  DEL PEAK 57(XP21.1) WILD-TYPE    194    100    148
D96V2, multiclass
        clus
vv       DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE
  CLUS_1                          54                           194
  CLUS_2                          57                           100
  CLUS_3                          24                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 57(XP21.1) MUTATED       45     53     11
  DEL PEAK 57(XP21.1) WILD-TYPE    189     76     81
D96V3, multiclass
        clus
vv       DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE
  CLUS_1                          45                           189
  CLUS_2                          53                            76
  CLUS_3                          11                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 57(XP21.1) MUTATED       24     24      8     39     14
  DEL PEAK 57(XP21.1) WILD-TYPE     51    126     17     50    102
D96V4, multiclass
        clus
vv       DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE
  CLUS_1                          24                            51
  CLUS_2                          24                           126
  CLUS_3                           8                            17
  CLUS_4                          39                            50
  CLUS_5                          14                           102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 57(XP21.1) MUTATED       60     69     14
  DEL PEAK 57(XP21.1) WILD-TYPE    104    259    117
D96V5, multiclass
        clus
vv       DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE
  CLUS_1                          60                           104
  CLUS_2                          69                           259
  CLUS_3                          14                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 57(XP21.1) MUTATED       34     17     43     41      8
  DEL PEAK 57(XP21.1) WILD-TYPE     93     88    186     54     59
D96V6, multiclass
        clus
vv       DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE
  CLUS_1                          34                            93
  CLUS_2                          17                            88
  CLUS_3                          43                           186
  CLUS_4                          41                            54
  CLUS_5                           8                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 57(XP21.1) MUTATED       50     45     35
  DEL PEAK 57(XP21.1) WILD-TYPE     94    164    136
D96V7, multiclass
        clus
vv       DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE
  CLUS_1                          50                            94
  CLUS_2                          45                           164
  CLUS_3                          35                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 57(XP21.1) MUTATED       14     30     27     18     41
  DEL PEAK 57(XP21.1) WILD-TYPE     33     92    135     83     51
D96V8, multiclass
        clus
vv       DEL PEAK 57(XP21.1) MUTATED DEL PEAK 57(XP21.1) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                          30                            92
  CLUS_3                          27                           135
  CLUS_4                          18                            83
  CLUS_5                          41                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = DEL PEAK 58(XP11.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 58(XP11.3) MUTATED       44     90     12
  DEL PEAK 58(XP11.3) WILD-TYPE    122    120    237
D97V1, multiclass
        clus
vv       DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE
  CLUS_1                          44                           122
  CLUS_2                          90                           120
  CLUS_3                          12                           237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 58(XP11.3) MUTATED       55     61     22
  DEL PEAK 58(XP11.3) WILD-TYPE    193     96    150
D97V2, multiclass
        clus
vv       DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE
  CLUS_1                          55                           193
  CLUS_2                          61                            96
  CLUS_3                          22                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 58(XP11.3) MUTATED       48     57      8
  DEL PEAK 58(XP11.3) WILD-TYPE    186     72     84
D97V3, multiclass
        clus
vv       DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE
  CLUS_1                          48                           186
  CLUS_2                          57                            72
  CLUS_3                           8                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 58(XP11.3) MUTATED       23     25      8     45     12
  DEL PEAK 58(XP11.3) WILD-TYPE     52    125     17     44    104
D97V4, multiclass
        clus
vv       DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE
  CLUS_1                          23                            52
  CLUS_2                          25                           125
  CLUS_3                           8                            17
  CLUS_4                          45                            44
  CLUS_5                          12                           104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 58(XP11.3) MUTATED       61     72     13
  DEL PEAK 58(XP11.3) WILD-TYPE    103    256    118
D97V5, multiclass
        clus
vv       DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE
  CLUS_1                          61                           103
  CLUS_2                          72                           256
  CLUS_3                          13                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 58(XP11.3) MUTATED       34     18     41     47      6
  DEL PEAK 58(XP11.3) WILD-TYPE     93     87    188     48     61
D97V6, multiclass
        clus
vv       DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE
  CLUS_1                          34                            93
  CLUS_2                          18                            87
  CLUS_3                          41                           188
  CLUS_4                          47                            48
  CLUS_5                           6                            61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 58(XP11.3) MUTATED       51     47     34
  DEL PEAK 58(XP11.3) WILD-TYPE     93    162    137
D97V7, multiclass
        clus
vv       DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE
  CLUS_1                          51                            93
  CLUS_2                          47                           162
  CLUS_3                          34                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 58(XP11.3) MUTATED       11     32     27     15     47
  DEL PEAK 58(XP11.3) WILD-TYPE     36     90    135     86     45
D97V8, multiclass
        clus
vv       DEL PEAK 58(XP11.3) MUTATED DEL PEAK 58(XP11.3) WILD-TYPE
  CLUS_1                          11                            36
  CLUS_2                          32                            90
  CLUS_3                          27                           135
  CLUS_4                          15                            86
  CLUS_5                          47                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = DEL PEAK 59(XQ11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 59(XQ11.2) MUTATED       37     54     12
  DEL PEAK 59(XQ11.2) WILD-TYPE    129    156    237
D98V1, multiclass
        clus
vv       DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE
  CLUS_1                          37                           129
  CLUS_2                          54                           156
  CLUS_3                          12                           237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 59(XQ11.2) MUTATED       43     34     18
  DEL PEAK 59(XQ11.2) WILD-TYPE    205    123    154
D98V2, multiclass
        clus
vv       DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE
  CLUS_1                          43                           205
  CLUS_2                          34                           123
  CLUS_3                          18                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 59(XQ11.2) MUTATED       40     31      5
  DEL PEAK 59(XQ11.2) WILD-TYPE    194     98     87
D98V3, multiclass
        clus
vv       DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE
  CLUS_1                          40                           194
  CLUS_2                          31                            98
  CLUS_3                           5                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 59(XQ11.2) MUTATED       19     23      7     18      9
  DEL PEAK 59(XQ11.2) WILD-TYPE     56    127     18     71    107
D98V4, multiclass
        clus
vv       DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE
  CLUS_1                          19                            56
  CLUS_2                          23                           127
  CLUS_3                           7                            18
  CLUS_4                          18                            71
  CLUS_5                           9                           107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 59(XQ11.2) MUTATED       33     60     10
  DEL PEAK 59(XQ11.2) WILD-TYPE    131    268    121
D98V5, multiclass
        clus
vv       DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE
  CLUS_1                          33                           131
  CLUS_2                          60                           268
  CLUS_3                          10                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 59(XQ11.2) MUTATED       25     16     37     20      5
  DEL PEAK 59(XQ11.2) WILD-TYPE    102     89    192     75     62
D98V6, multiclass
        clus
vv       DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE
  CLUS_1                          25                           102
  CLUS_2                          16                            89
  CLUS_3                          37                           192
  CLUS_4                          20                            75
  CLUS_5                           5                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 59(XQ11.2) MUTATED       30     38     20
  DEL PEAK 59(XQ11.2) WILD-TYPE    114    171    151
D98V7, multiclass
        clus
vv       DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE
  CLUS_1                          30                           114
  CLUS_2                          38                           171
  CLUS_3                          20                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 59(XQ11.2) MUTATED        9     25     25      9     20
  DEL PEAK 59(XQ11.2) WILD-TYPE     38     97    137     92     72
D98V8, multiclass
        clus
vv       DEL PEAK 59(XQ11.2) MUTATED DEL PEAK 59(XQ11.2) WILD-TYPE
  CLUS_1                           9                            38
  CLUS_2                          25                            97
  CLUS_3                          25                           137
  CLUS_4                           9                            92
  CLUS_5                          20                            72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = DEL PEAK 60(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 60(XQ21.33) MUTATED       37     47     12
  DEL PEAK 60(XQ21.33) WILD-TYPE    129    163    237
D99V1, multiclass
        clus
vv       DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE
  CLUS_1                           37                            129
  CLUS_2                           47                            163
  CLUS_3                           12                            237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 60(XQ21.33) MUTATED       38     34     16
  DEL PEAK 60(XQ21.33) WILD-TYPE    210    123    156
D99V2, multiclass
        clus
vv       DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE
  CLUS_1                           38                            210
  CLUS_2                           34                            123
  CLUS_3                           16                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 60(XQ21.33) MUTATED       41     27      6
  DEL PEAK 60(XQ21.33) WILD-TYPE    193    102     86
D99V3, multiclass
        clus
vv       DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE
  CLUS_1                           41                            193
  CLUS_2                           27                            102
  CLUS_3                            6                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 60(XQ21.33) MUTATED       20     24      5     16      9
  DEL PEAK 60(XQ21.33) WILD-TYPE     55    126     20     73    107
D99V4, multiclass
        clus
vv       DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE
  CLUS_1                           20                             55
  CLUS_2                           24                            126
  CLUS_3                            5                             20
  CLUS_4                           16                             73
  CLUS_5                            9                            107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 60(XQ21.33) MUTATED       32     54     10
  DEL PEAK 60(XQ21.33) WILD-TYPE    132    274    121
D99V5, multiclass
        clus
vv       DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE
  CLUS_1                           32                            132
  CLUS_2                           54                            274
  CLUS_3                           10                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 60(XQ21.33) MUTATED       27     18     30     17      4
  DEL PEAK 60(XQ21.33) WILD-TYPE    100     87    199     78     63
D99V6, multiclass
        clus
vv       DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE
  CLUS_1                           27                            100
  CLUS_2                           18                             87
  CLUS_3                           30                            199
  CLUS_4                           17                             78
  CLUS_5                            4                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 60(XQ21.33) MUTATED       31     31     19
  DEL PEAK 60(XQ21.33) WILD-TYPE    113    178    152
D99V7, multiclass
        clus
vv       DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE
  CLUS_1                           31                            113
  CLUS_2                           31                            178
  CLUS_3                           19                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 60(XQ21.33) MUTATED        9     24     21     10     17
  DEL PEAK 60(XQ21.33) WILD-TYPE     38     98    141     91     75
D99V8, multiclass
        clus
vv       DEL PEAK 60(XQ21.33) MUTATED DEL PEAK 60(XQ21.33) WILD-TYPE
  CLUS_1                            9                             38
  CLUS_2                           24                             98
  CLUS_3                           21                            141
  CLUS_4                           10                             91
  CLUS_5                           17                             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
