[1] "ofn"        "-oTTGCT-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/TGCT-TP/15111345/TGCT-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/TGCT-TP/15890416/transformed.cor.cli.txt"

nPatients in clinical file=150, in cluster file=147, common to both=147
[1] "Reduce the number of clustering variables from 70 to 63."
[1]  63 147
[1] "KIT MUTATION ANALYSIS"
[1] 3
  KIT MUTATED KIT WILD-TYPE 
           26           121 
  KIT MUTATED KIT WILD-TYPE 
           26           121 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            19            128 
  KRAS MUTATED KRAS WILD-TYPE 
            19            128 
[1] "ANKLE1 MUTATION ANALYSIS"
[1] 3
  ANKLE1 MUTATED ANKLE1 WILD-TYPE 
              12              135 
  ANKLE1 MUTATED ANKLE1 WILD-TYPE 
              12              135 
[1] "FAM104B MUTATION ANALYSIS"
[1] 3
  FAM104B MUTATED FAM104B WILD-TYPE 
                7               140 
  FAM104B MUTATED FAM104B WILD-TYPE 
                7               140 
[1] "CSGALNACT2 MUTATION ANALYSIS"
[1] 3
  CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE 
                   5                  142 
  CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE 
                   5                  142 
[1] "DDX11 MUTATION ANALYSIS"
[1] 3
  DDX11 MUTATED DDX11 WILD-TYPE 
              8             139 
  DDX11 MUTATED DDX11 WILD-TYPE 
              8             139 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             7            140 
  NRAS MUTATED NRAS WILD-TYPE 
             7            140 
[1] "PNPLA4 MUTATION ANALYSIS"
[1] 3
  PNPLA4 MUTATED PNPLA4 WILD-TYPE 
               5              142 
  PNPLA4 MUTATED PNPLA4 WILD-TYPE 
               5              142 
[1] "SERINC2 MUTATION ANALYSIS"
[1] 3
  SERINC2 MUTATED SERINC2 WILD-TYPE 
                4               143 
  SERINC2 MUTATED SERINC2 WILD-TYPE 
                4               143 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
              5             142 
  RBM10 MUTATED RBM10 WILD-TYPE 
              5             142 
[1] "DEK MUTATION ANALYSIS"
[1] 3
  DEK MUTATED DEK WILD-TYPE 
            5           142 
  DEK MUTATED DEK WILD-TYPE 
            5           142 
[1] "ERC1 MUTATION ANALYSIS"
[1] 3
  ERC1 MUTATED ERC1 WILD-TYPE 
             7            140 
  ERC1 MUTATED ERC1 WILD-TYPE 
             7            140 
[1] "HSF4 MUTATION ANALYSIS"
[1] 3
  HSF4 MUTATED HSF4 WILD-TYPE 
             6            141 
  HSF4 MUTATED HSF4 WILD-TYPE 
             6            141 
[1] "MUC6 MUTATION ANALYSIS"
[1] 3
  MUC6 MUTATED MUC6 WILD-TYPE 
            15            132 
  MUC6 MUTATED MUC6 WILD-TYPE 
            15            132 
[1] "FANK1 MUTATION ANALYSIS"
[1] 3
  FANK1 MUTATED FANK1 WILD-TYPE 
              4             143 
  FANK1 MUTATED FANK1 WILD-TYPE 
              4             143 
[1] "MLLT3 MUTATION ANALYSIS"
[1] 3
  MLLT3 MUTATED MLLT3 WILD-TYPE 
              4             143 
  MLLT3 MUTATED MLLT3 WILD-TYPE 
              4             143 
[1] "RHPN2 MUTATION ANALYSIS"
[1] 3
  RHPN2 MUTATED RHPN2 WILD-TYPE 
              6             141 
  RHPN2 MUTATED RHPN2 WILD-TYPE 
              6             141 
[1] "SP8 MUTATION ANALYSIS"
[1] 3
  SP8 MUTATED SP8 WILD-TYPE 
            6           141 
  SP8 MUTATED SP8 WILD-TYPE 
            6           141 
[1] "KRTAP1-1 MUTATION ANALYSIS"
[1] 3
  KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE 
                 3                144 
  KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE 
                 3                144 
[1] "ANKRD11 MUTATION ANALYSIS"
[1] 3
  ANKRD11 MUTATED ANKRD11 WILD-TYPE 
                7               140 
  ANKRD11 MUTATED ANKRD11 WILD-TYPE 
                7               140 
[1] "SPIN2A MUTATION ANALYSIS"
[1] 3
  SPIN2A MUTATED SPIN2A WILD-TYPE 
               3              144 
  SPIN2A MUTATED SPIN2A WILD-TYPE 
               3              144 
[1] "ATXN3 MUTATION ANALYSIS"
[1] 3
  ATXN3 MUTATED ATXN3 WILD-TYPE 
              3             144 
  ATXN3 MUTATED ATXN3 WILD-TYPE 
              3             144 
[1] "MEF2A MUTATION ANALYSIS"
[1] 3
  MEF2A MUTATED MEF2A WILD-TYPE 
              3             144 
  MEF2A MUTATED MEF2A WILD-TYPE 
              3             144 
[1] "SSBP3 MUTATION ANALYSIS"
[1] 3
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              3             144 
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              3             144 
[1] "KRTAP10-10 MUTATION ANALYSIS"
[1] 3
  KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE 
                   5                  142 
  KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE 
                   5                  142 
[1] "BCL11B MUTATION ANALYSIS"
[1] 3
  BCL11B MUTATED BCL11B WILD-TYPE 
               5              142 
  BCL11B MUTATED BCL11B WILD-TYPE 
               5              142 
[1] "FAM101B MUTATION ANALYSIS"
[1] 3
  FAM101B MUTATED FAM101B WILD-TYPE 
                4               143 
  FAM101B MUTATED FAM101B WILD-TYPE 
                4               143 
[1] "PSMD11 MUTATION ANALYSIS"
[1] 3
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               4              143 
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               4              143 
[1] "FAM8A1 MUTATION ANALYSIS"
[1] 3
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               3              144 
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               3              144 
[1] "SPTAN1 MUTATION ANALYSIS"
[1] 3
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               4              143 
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               4              143 
[1] "CRB2 MUTATION ANALYSIS"
[1] 3
  CRB2 MUTATED CRB2 WILD-TYPE 
             6            141 
  CRB2 MUTATED CRB2 WILD-TYPE 
             6            141 
[1] "OPLAH MUTATION ANALYSIS"
[1] 3
  OPLAH MUTATED OPLAH WILD-TYPE 
              4             143 
  OPLAH MUTATED OPLAH WILD-TYPE 
              4             143 
[1] "C22ORF43 MUTATION ANALYSIS"
[1] 3
  C22ORF43 MUTATED C22ORF43 WILD-TYPE 
                 3                144 
  C22ORF43 MUTATED C22ORF43 WILD-TYPE 
                 3                144 
[1] "GAS2L2 MUTATION ANALYSIS"
[1] 3
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
               3              144 
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
               3              144 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             141 
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             141 
[1] "MUC2 MUTATION ANALYSIS"
[1] 3
  MUC2 MUTATED MUC2 WILD-TYPE 
            16            131 
  MUC2 MUTATED MUC2 WILD-TYPE 
            16            131 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              5             142 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              5             142 
[1] "NAT10 MUTATION ANALYSIS"
[1] 3
  NAT10 MUTATED NAT10 WILD-TYPE 
              4             143 
  NAT10 MUTATED NAT10 WILD-TYPE 
              4             143 
[1] "INTS4 MUTATION ANALYSIS"
[1] 3
  INTS4 MUTATED INTS4 WILD-TYPE 
              3             144 
  INTS4 MUTATED INTS4 WILD-TYPE 
              3             144 
[1] "TTC38 MUTATION ANALYSIS"
[1] 3
  TTC38 MUTATED TTC38 WILD-TYPE 
              4             143 
  TTC38 MUTATED TTC38 WILD-TYPE 
              4             143 
[1] "RBM3 MUTATION ANALYSIS"
[1] 3
  RBM3 MUTATED RBM3 WILD-TYPE 
             3            144 
  RBM3 MUTATED RBM3 WILD-TYPE 
             3            144 
[1] "TCHH MUTATION ANALYSIS"
[1] 3
  TCHH MUTATED TCHH WILD-TYPE 
             5            142 
  TCHH MUTATED TCHH WILD-TYPE 
             5            142 
[1] "ZC3H11A MUTATION ANALYSIS"
[1] 3
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                3               144 
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                3               144 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
             4            143 
  RAC1 MUTATED RAC1 WILD-TYPE 
             4            143 
[1] "MTIF3 MUTATION ANALYSIS"
[1] 3
  MTIF3 MUTATED MTIF3 WILD-TYPE 
              3             144 
  MTIF3 MUTATED MTIF3 WILD-TYPE 
              3             144 
[1] "MFF MUTATION ANALYSIS"
[1] 3
  MFF MUTATED MFF WILD-TYPE 
            3           144 
  MFF MUTATED MFF WILD-TYPE 
            3           144 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               4              143 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               4              143 
[1] "CUX1 MUTATION ANALYSIS"
[1] 3
  CUX1 MUTATED CUX1 WILD-TYPE 
             5            142 
  CUX1 MUTATED CUX1 WILD-TYPE 
             5            142 
[1] "PCMTD1 MUTATION ANALYSIS"
[1] 3
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               5              142 
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               5              142 
[1] "EZH2 MUTATION ANALYSIS"
[1] 3
  EZH2 MUTATED EZH2 WILD-TYPE 
             4            143 
  EZH2 MUTATED EZH2 WILD-TYPE 
             4            143 
[1] "HTT MUTATION ANALYSIS"
[1] 3
  HTT MUTATED HTT WILD-TYPE 
            3           144 
  HTT MUTATED HTT WILD-TYPE 
            3           144 
[1] "GSX2 MUTATION ANALYSIS"
[1] 3
  GSX2 MUTATED GSX2 WILD-TYPE 
             4            143 
  GSX2 MUTATED GSX2 WILD-TYPE 
             4            143 
[1] "AHDC1 MUTATION ANALYSIS"
[1] 3
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              4             143 
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              4             143 
[1] "RFC3 MUTATION ANALYSIS"
[1] 3
  RFC3 MUTATED RFC3 WILD-TYPE 
             3            144 
  RFC3 MUTATED RFC3 WILD-TYPE 
             3            144 
[1] "CHD4 MUTATION ANALYSIS"
[1] 3
  CHD4 MUTATED CHD4 WILD-TYPE 
             4            143 
  CHD4 MUTATED CHD4 WILD-TYPE 
             4            143 
[1] "RUNX2 MUTATION ANALYSIS"
[1] 3
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              4             143 
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              4             143 
[1] "SP4 MUTATION ANALYSIS"
[1] 3
  SP4 MUTATED SP4 WILD-TYPE 
            4           143 
  SP4 MUTATED SP4 WILD-TYPE 
            4           143 
[1] "DIAPH1 MUTATION ANALYSIS"
[1] 3
  DIAPH1 MUTATED DIAPH1 WILD-TYPE 
               3              144 
  DIAPH1 MUTATED DIAPH1 WILD-TYPE 
               3              144 
[1] "PLEC MUTATION ANALYSIS"
[1] 3
  PLEC MUTATED PLEC WILD-TYPE 
            10            137 
  PLEC MUTATED PLEC WILD-TYPE 
            10            137 
[1] "NHS MUTATION ANALYSIS"
[1] 3
  NHS MUTATED NHS WILD-TYPE 
            3           144 
  NHS MUTATED NHS WILD-TYPE 
            3           144 
[1] "PIK3CD MUTATION ANALYSIS"
[1] 3
  PIK3CD MUTATED PIK3CD WILD-TYPE 
               4              143 
  PIK3CD MUTATED PIK3CD WILD-TYPE 
               4              143 
[1] "EPAS1 MUTATION ANALYSIS"
[1] 3
  EPAS1 MUTATED EPAS1 WILD-TYPE 
              5             142 
  EPAS1 MUTATED EPAS1 WILD-TYPE 
              5             142 
[1] "DLC1 MUTATION ANALYSIS"
[1] 3
  DLC1 MUTATED DLC1 WILD-TYPE 
             3            144 
  DLC1 MUTATED DLC1 WILD-TYPE 
             3            144 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 147 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 147 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = KIT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       14      9      3
  KIT WILD-TYPE     33     33     55
D1V1, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          14            33
  CLUS_2           9            33
  CLUS_3           3            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       19      2      5
  KIT WILD-TYPE     35     46     40
D1V2, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          19            35
  CLUS_2           2            46
  CLUS_3           5            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED       19      2      1      0
  KIT WILD-TYPE     28     12     33     21
D1V3, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          19            28
  CLUS_2           2            12
  CLUS_3           1            33
  CLUS_4           0            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       20      1      1
  KIT WILD-TYPE     29     23     42
D1V4, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          20            29
  CLUS_2           1            23
  CLUS_3           1            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       25      0      1
  KIT WILD-TYPE     43     40     38
D1V5, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          25            43
  CLUS_2           0            40
  CLUS_3           1            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIT MUTATED       25      0      0      1      0      0      0
  KIT WILD-TYPE     17     26     12     23      8     23     12
D1V6, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          25            17
  CLUS_2           0            26
  CLUS_3           0            12
  CLUS_4           1            23
  CLUS_5           0             8
  CLUS_6           0            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       23      2      1
  KIT WILD-TYPE     28     54     39
D1V7, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          23            28
  CLUS_2           2            54
  CLUS_3           1            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       25      0      1
  KIT WILD-TYPE     43     38     40
D1V8, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          25            43
  CLUS_2           0            38
  CLUS_3           1            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       25      0      1
  KIT WILD-TYPE     42     36     43
D1V9, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          25            42
  CLUS_2           0            36
  CLUS_3           1            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED       21      4      0      1
  KIT WILD-TYPE     15     28     38     40
D1V10, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          21            15
  CLUS_2           4            28
  CLUS_3           0            38
  CLUS_4           1            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        7     10      2
  KRAS WILD-TYPE     40     32     56
D2V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            7             40
  CLUS_2           10             32
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       13      0      6
  KRAS WILD-TYPE     41     48     39
D2V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           13             41
  CLUS_2            0             48
  CLUS_3            6             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       12      1      1      0
  KRAS WILD-TYPE     35     13     33     21
D2V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           12             35
  CLUS_2            1             13
  CLUS_3            1             33
  CLUS_4            0             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       13      0      1
  KRAS WILD-TYPE     36     24     42
D2V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           13             36
  CLUS_2            0             24
  CLUS_3            1             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       18      0      1
  KRAS WILD-TYPE     50     40     38
D2V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           18             50
  CLUS_2            0             40
  CLUS_3            1             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED       12      6      0      1      0      0      0
  KRAS WILD-TYPE     30     20     12     23      8     23     12
D2V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           12             30
  CLUS_2            6             20
  CLUS_3            0             12
  CLUS_4            1             23
  CLUS_5            0              8
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       16      2      1
  KRAS WILD-TYPE     35     54     39
D2V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           16             35
  CLUS_2            2             54
  CLUS_3            1             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       18      0      1
  KRAS WILD-TYPE     50     38     40
D2V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           18             50
  CLUS_2            0             38
  CLUS_3            1             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       18      0      1
  KRAS WILD-TYPE     49     36     43
D2V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           18             49
  CLUS_2            0             36
  CLUS_3            1             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        9      9      0      1
  KRAS WILD-TYPE     27     23     38     40
D2V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9             27
  CLUS_2            9             23
  CLUS_3            0             38
  CLUS_4            1             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = ANKLE1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKLE1 MUTATED        1      5      6
  ANKLE1 WILD-TYPE     46     37     52
D3V1, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              5               37
  CLUS_3              6               52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKLE1 MUTATED        4      2      6
  ANKLE1 WILD-TYPE     50     46     39
D3V2, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              2               46
  CLUS_3              6               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKLE1 MUTATED        4      0      3      1
  ANKLE1 WILD-TYPE     43     14     31     20
D3V3, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               14
  CLUS_3              3               31
  CLUS_4              1               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKLE1 MUTATED        4      0      4
  ANKLE1 WILD-TYPE     45     24     39
D3V4, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              4               45
  CLUS_2              0               24
  CLUS_3              4               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKLE1 MUTATED        7      2      3
  ANKLE1 WILD-TYPE     61     38     36
D3V5, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              7               61
  CLUS_2              2               38
  CLUS_3              3               36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKLE1 MUTATED        3      4      1      2      0      1      1
  ANKLE1 WILD-TYPE     39     22     11     22      8     22     11
D3V6, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              3               39
  CLUS_2              4               22
  CLUS_3              1               11
  CLUS_4              2               22
  CLUS_5              0                8
  CLUS_6              1               22
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKLE1 MUTATED        4      5      3
  ANKLE1 WILD-TYPE     47     51     37
D3V7, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              5               51
  CLUS_3              3               37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKLE1 MUTATED        7      2      3
  ANKLE1 WILD-TYPE     61     36     38
D3V8, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              7               61
  CLUS_2              2               36
  CLUS_3              3               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKLE1 MUTATED        7      2      3
  ANKLE1 WILD-TYPE     60     34     41
D3V9, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              7               60
  CLUS_2              2               34
  CLUS_3              3               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKLE1 MUTATED        2      5      2      3
  ANKLE1 WILD-TYPE     34     27     36     38
D3V10, multiclass
        clus
vv       ANKLE1 MUTATED ANKLE1 WILD-TYPE
  CLUS_1              2               34
  CLUS_2              5               27
  CLUS_3              2               36
  CLUS_4              3               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = FAM104B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        3      3      1
  FAM104B WILD-TYPE     44     39     57
D4V1, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               3                44
  CLUS_2               3                39
  CLUS_3               1                57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        4      1      2
  FAM104B WILD-TYPE     50     47     43
D4V2, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               4                50
  CLUS_2               1                47
  CLUS_3               2                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM104B MUTATED        3      1      0      1
  FAM104B WILD-TYPE     44     13     34     20
D4V3, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                13
  CLUS_3               0                34
  CLUS_4               1                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        2      0      3
  FAM104B WILD-TYPE     47     24     40
D4V4, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               2                47
  CLUS_2               0                24
  CLUS_3               3                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        5      2      0
  FAM104B WILD-TYPE     63     38     39
D4V5, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                63
  CLUS_2               2                38
  CLUS_3               0                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM104B MUTATED        5      0      1      0      0      1      0
  FAM104B WILD-TYPE     37     26     11     24      8     22     12
D4V6, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                37
  CLUS_2               0                26
  CLUS_3               1                11
  CLUS_4               0                24
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        5      2      0
  FAM104B WILD-TYPE     46     54     40
D4V7, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                46
  CLUS_2               2                54
  CLUS_3               0                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        5      2      0
  FAM104B WILD-TYPE     63     36     41
D4V8, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                63
  CLUS_2               2                36
  CLUS_3               0                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        5      1      1
  FAM104B WILD-TYPE     62     35     43
D4V9, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                62
  CLUS_2               1                35
  CLUS_3               1                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM104B MUTATED        2      3      1      1
  FAM104B WILD-TYPE     34     29     37     40
D4V10, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               2                34
  CLUS_2               3                29
  CLUS_3               1                37
  CLUS_4               1                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = CSGALNACT2 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      0      5
  CSGALNACT2 WILD-TYPE     47     42     53
D5V1, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   47
  CLUS_2                  0                   42
  CLUS_3                  5                   53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      3      2
  CSGALNACT2 WILD-TYPE     54     45     43
D5V2, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   54
  CLUS_2                  3                   45
  CLUS_3                  2                   43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        0      0      5      0
  CSGALNACT2 WILD-TYPE     47     14     29     21
D5V3, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   47
  CLUS_2                  0                   14
  CLUS_3                  5                   29
  CLUS_4                  0                   21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      3      2
  CSGALNACT2 WILD-TYPE     49     21     41
D5V4, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   49
  CLUS_2                  3                   21
  CLUS_3                  2                   41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      1      4
  CSGALNACT2 WILD-TYPE     68     39     35
D5V5, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   68
  CLUS_2                  1                   39
  CLUS_3                  4                   35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSGALNACT2 MUTATED        0      0      2      3      0      0      0
  CSGALNACT2 WILD-TYPE     42     26     10     21      8     23     12
D5V6, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   42
  CLUS_2                  0                   26
  CLUS_3                  2                   10
  CLUS_4                  3                   21
  CLUS_5                  0                    8
  CLUS_6                  0                   23
  CLUS_7                  0                   12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      1      4
  CSGALNACT2 WILD-TYPE     51     55     36
D5V7, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   51
  CLUS_2                  1                   55
  CLUS_3                  4                   36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      1      4
  CSGALNACT2 WILD-TYPE     68     37     37
D5V8, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   68
  CLUS_2                  1                   37
  CLUS_3                  4                   37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      1      4
  CSGALNACT2 WILD-TYPE     67     35     40
D5V9, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   67
  CLUS_2                  1                   35
  CLUS_3                  4                   40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        0      0      1      4
  CSGALNACT2 WILD-TYPE     36     32     37     37
D5V10, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   36
  CLUS_2                  0                   32
  CLUS_3                  1                   37
  CLUS_4                  4                   37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = DDX11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        3      2      3
  DDX11 WILD-TYPE     44     40     55
D6V1, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             2              40
  CLUS_3             3              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        1      4      3
  DDX11 WILD-TYPE     53     44     42
D6V2, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             4              44
  CLUS_3             3              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        2      1      1      3
  DDX11 WILD-TYPE     45     13     33     18
D6V3, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              13
  CLUS_3             1              33
  CLUS_4             3              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        2      0      5
  DDX11 WILD-TYPE     47     24     38
D6V4, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             0              24
  CLUS_3             5              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        3      4      1
  DDX11 WILD-TYPE     65     36     38
D6V5, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             4              36
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX11 MUTATED        1      2      1      0      1      2      1
  DDX11 WILD-TYPE     41     24     11     24      7     21     11
D6V6, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             2              24
  CLUS_3             1              11
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             2              21
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        1      6      1
  DDX11 WILD-TYPE     50     50     39
D6V7, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             6              50
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        3      4      1
  DDX11 WILD-TYPE     65     34     40
D6V8, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             4              34
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        3      3      2
  DDX11 WILD-TYPE     64     33     42
D6V9, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             3              33
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        0      3      4      1
  DDX11 WILD-TYPE     36     29     34     40
D6V10, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             0              36
  CLUS_2             3              29
  CLUS_3             4              34
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        4      3      0
  NRAS WILD-TYPE     43     39     58
D7V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            4             43
  CLUS_2            3             39
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        5      0      2
  NRAS WILD-TYPE     49     48     43
D7V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             48
  CLUS_3            2             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        5      0      0      0
  NRAS WILD-TYPE     42     14     34     21
D7V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            5             42
  CLUS_2            0             14
  CLUS_3            0             34
  CLUS_4            0             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        4      0      1
  NRAS WILD-TYPE     45     24     42
D7V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            4             45
  CLUS_2            0             24
  CLUS_3            1             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        7      0      0
  NRAS WILD-TYPE     61     40     39
D7V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            7             61
  CLUS_2            0             40
  CLUS_3            0             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAS MUTATED        6      1      0      0      0      0      0
  NRAS WILD-TYPE     36     25     12     24      8     23     12
D7V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            6             36
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        6      1      0
  NRAS WILD-TYPE     45     55     40
D7V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            6             45
  CLUS_2            1             55
  CLUS_3            0             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        7      0      0
  NRAS WILD-TYPE     61     38     41
D7V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            7             61
  CLUS_2            0             38
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        6      1      0
  NRAS WILD-TYPE     61     35     44
D7V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            6             61
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        4      3      0      0
  NRAS WILD-TYPE     32     29     38     41
D7V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            4             32
  CLUS_2            3             29
  CLUS_3            0             38
  CLUS_4            0             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = PNPLA4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      1      1
  PNPLA4 WILD-TYPE     44     41     57
D8V1, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               41
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        2      2      1
  PNPLA4 WILD-TYPE     52     46     44
D8V2, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              2               46
  CLUS_3              1               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA4 MUTATED        3      1      0      1
  PNPLA4 WILD-TYPE     44     13     34     20
D8V3, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               13
  CLUS_3              0               34
  CLUS_4              1               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        2      0      3
  PNPLA4 WILD-TYPE     47     24     40
D8V4, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              2               47
  CLUS_2              0               24
  CLUS_3              3               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      2      0
  PNPLA4 WILD-TYPE     65     38     39
D8V5, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              2               38
  CLUS_3              0               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PNPLA4 MUTATED        3      0      1      0      0      1      0
  PNPLA4 WILD-TYPE     39     26     11     24      8     22     12
D8V6, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               39
  CLUS_2              0               26
  CLUS_3              1               11
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              1               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      2      0
  PNPLA4 WILD-TYPE     48     54     40
D8V7, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               54
  CLUS_3              0               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      2      0
  PNPLA4 WILD-TYPE     65     36     41
D8V8, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              2               36
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      2      0
  PNPLA4 WILD-TYPE     64     34     44
D8V9, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              2               34
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA4 MUTATED        2      1      2      0
  PNPLA4 WILD-TYPE     34     31     36     41
D8V10, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              2               34
  CLUS_2              1               31
  CLUS_3              2               36
  CLUS_4              0               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = SERINC2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      0      3
  SERINC2 WILD-TYPE     46     42     55
D9V1, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                42
  CLUS_3               3                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      2      1
  SERINC2 WILD-TYPE     53     46     44
D9V2, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               2                46
  CLUS_3               1                44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERINC2 MUTATED        0      1      2      0
  SERINC2 WILD-TYPE     47     13     32     21
D9V3, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               0                47
  CLUS_2               1                13
  CLUS_3               2                32
  CLUS_4               0                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        0      0      3
  SERINC2 WILD-TYPE     49     24     40
D9V4, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               0                49
  CLUS_2               0                24
  CLUS_3               3                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      2      1
  SERINC2 WILD-TYPE     67     38     38
D9V5, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                67
  CLUS_2               2                38
  CLUS_3               1                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SERINC2 MUTATED        1      0      1      1      0      1      0
  SERINC2 WILD-TYPE     41     26     11     23      8     22     12
D9V6, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                41
  CLUS_2               0                26
  CLUS_3               1                11
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      2      1
  SERINC2 WILD-TYPE     50     54     39
D9V7, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                54
  CLUS_3               1                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      2      1
  SERINC2 WILD-TYPE     67     36     40
D9V8, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                67
  CLUS_2               2                36
  CLUS_3               1                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      1      2
  SERINC2 WILD-TYPE     66     35     42
D9V9, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                66
  CLUS_2               1                35
  CLUS_3               2                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERINC2 MUTATED        1      0      2      1
  SERINC2 WILD-TYPE     35     32     36     40
D9V10, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                35
  CLUS_2               0                32
  CLUS_3               2                36
  CLUS_4               1                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = RBM10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        2      2      1
  RBM10 WILD-TYPE     45     40     57
D10V1, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              40
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      0      2
  RBM10 WILD-TYPE     51     48     43
D10V2, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              48
  CLUS_3             2              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        3      0      1      1
  RBM10 WILD-TYPE     44     14     33     20
D10V3, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              14
  CLUS_3             1              33
  CLUS_4             1              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      0      2
  RBM10 WILD-TYPE     46     24     41
D10V4, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              46
  CLUS_2             0              24
  CLUS_3             2              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      0      2
  RBM10 WILD-TYPE     65     40     37
D10V5, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             0              40
  CLUS_3             2              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM10 MUTATED        1      2      0      1      0      0      1
  RBM10 WILD-TYPE     41     24     12     23      8     23     11
D10V6, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             2              24
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        2      1      2
  RBM10 WILD-TYPE     49     55     38
D10V7, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              55
  CLUS_3             2              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      0      2
  RBM10 WILD-TYPE     65     38     39
D10V8, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             0              38
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      0      2
  RBM10 WILD-TYPE     64     36     42
D10V9, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             0              36
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        1      2      0      2
  RBM10 WILD-TYPE     35     30     38     39
D10V10, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              35
  CLUS_2             2              30
  CLUS_3             0              38
  CLUS_4             2              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        0      4      1
  DEK WILD-TYPE     47     38     57
D11V1, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           0            47
  CLUS_2           4            38
  CLUS_3           1            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        2      1      2
  DEK WILD-TYPE     52     47     43
D11V2, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           2            52
  CLUS_2           1            47
  CLUS_3           2            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        3      1      1      0
  DEK WILD-TYPE     44     13     33     21
D11V3, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           3            44
  CLUS_2           1            13
  CLUS_3           1            33
  CLUS_4           0            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        4      0      1
  DEK WILD-TYPE     45     24     42
D11V4, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4            45
  CLUS_2           0            24
  CLUS_3           1            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        4      1      0
  DEK WILD-TYPE     64     39     39
D11V5, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4            64
  CLUS_2           1            39
  CLUS_3           0            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEK MUTATED        0      4      1      0      0      0      0
  DEK WILD-TYPE     42     22     11     24      8     23     12
D11V6, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           0            42
  CLUS_2           4            22
  CLUS_3           1            11
  CLUS_4           0            24
  CLUS_5           0             8
  CLUS_6           0            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        3      2      0
  DEK WILD-TYPE     48     54     40
D11V7, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           3            48
  CLUS_2           2            54
  CLUS_3           0            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        4      1      0
  DEK WILD-TYPE     64     37     41
D11V8, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4            64
  CLUS_2           1            37
  CLUS_3           0            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        4      0      1
  DEK WILD-TYPE     63     36     43
D11V9, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4            63
  CLUS_2           0            36
  CLUS_3           1            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        1      3      1      0
  DEK WILD-TYPE     35     29     37     41
D11V10, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           1            35
  CLUS_2           3            29
  CLUS_3           1            37
  CLUS_4           0            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = ERC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        3      2      2
  ERC1 WILD-TYPE     44     40     56
D12V1, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            2             40
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        2      2      3
  ERC1 WILD-TYPE     52     46     42
D12V2, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            2             46
  CLUS_3            3             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERC1 MUTATED        2      1      1      2
  ERC1 WILD-TYPE     45     13     33     19
D12V3, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             13
  CLUS_3            1             33
  CLUS_4            2             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        2      1      3
  ERC1 WILD-TYPE     47     23     40
D12V4, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            1             23
  CLUS_3            3             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        3      2      2
  ERC1 WILD-TYPE     65     38     37
D12V5, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            3             65
  CLUS_2            2             38
  CLUS_3            2             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERC1 MUTATED        3      0      0      1      1      1      1
  ERC1 WILD-TYPE     39     26     12     23      7     22     11
D12V6, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            3             39
  CLUS_2            0             26
  CLUS_3            0             12
  CLUS_4            1             23
  CLUS_5            1              7
  CLUS_6            1             22
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        2      3      2
  ERC1 WILD-TYPE     49     53     38
D12V7, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            3             53
  CLUS_3            2             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        3      2      2
  ERC1 WILD-TYPE     65     36     39
D12V8, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            3             65
  CLUS_2            2             36
  CLUS_3            2             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        3      2      2
  ERC1 WILD-TYPE     64     34     42
D12V9, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            3             64
  CLUS_2            2             34
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERC1 MUTATED        1      2      2      2
  ERC1 WILD-TYPE     35     30     36     39
D12V10, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            1             35
  CLUS_2            2             30
  CLUS_3            2             36
  CLUS_4            2             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = HSF4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      1      1
  HSF4 WILD-TYPE     43     41     57
D13V1, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            1             41
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      2      0
  HSF4 WILD-TYPE     50     46     45
D13V2, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            2             46
  CLUS_3            0             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF4 MUTATED        2      2      1      1
  HSF4 WILD-TYPE     45     12     33     20
D13V3, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            2             12
  CLUS_3            1             33
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        3      1      2
  HSF4 WILD-TYPE     46     23     41
D13V4, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            3             46
  CLUS_2            1             23
  CLUS_3            2             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      2      0
  HSF4 WILD-TYPE     64     38     39
D13V5, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             64
  CLUS_2            2             38
  CLUS_3            0             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSF4 MUTATED        4      0      1      0      1      0      0
  HSF4 WILD-TYPE     38     26     11     24      7     23     12
D13V6, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             38
  CLUS_2            0             26
  CLUS_3            1             11
  CLUS_4            0             24
  CLUS_5            1              7
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      2      0
  HSF4 WILD-TYPE     47     54     40
D13V7, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             54
  CLUS_3            0             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      2      0
  HSF4 WILD-TYPE     64     36     41
D13V8, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             64
  CLUS_2            2             36
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      2      0
  HSF4 WILD-TYPE     63     34     44
D13V9, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             63
  CLUS_2            2             34
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF4 MUTATED        3      1      2      0
  HSF4 WILD-TYPE     33     31     36     41
D13V10, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            3             33
  CLUS_2            1             31
  CLUS_3            2             36
  CLUS_4            0             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = MUC6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        6      3      6
  MUC6 WILD-TYPE     41     39     52
D14V1, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            6             41
  CLUS_2            3             39
  CLUS_3            6             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        4      5      6
  MUC6 WILD-TYPE     50     43     39
D14V2, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            5             43
  CLUS_3            6             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED        4      0      3      4
  MUC6 WILD-TYPE     43     14     31     17
D14V3, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             14
  CLUS_3            3             31
  CLUS_4            4             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        4      0      7
  MUC6 WILD-TYPE     45     24     36
D14V4, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            4             45
  CLUS_2            0             24
  CLUS_3            7             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        6      5      4
  MUC6 WILD-TYPE     62     35     35
D14V5, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            6             62
  CLUS_2            5             35
  CLUS_3            4             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC6 MUTATED        4      2      1      2      1      3      2
  MUC6 WILD-TYPE     38     24     11     22      7     20     10
D14V6, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            4             38
  CLUS_2            2             24
  CLUS_3            1             11
  CLUS_4            2             22
  CLUS_5            1              7
  CLUS_6            3             20
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        5      6      4
  MUC6 WILD-TYPE     46     50     36
D14V7, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            6             50
  CLUS_3            4             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        6      5      4
  MUC6 WILD-TYPE     62     33     37
D14V8, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            6             62
  CLUS_2            5             33
  CLUS_3            4             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        6      5      4
  MUC6 WILD-TYPE     61     31     40
D14V9, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            6             61
  CLUS_2            5             31
  CLUS_3            4             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED        3      3      5      4
  MUC6 WILD-TYPE     33     29     33     37
D14V10, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            3             33
  CLUS_2            3             29
  CLUS_3            5             33
  CLUS_4            4             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = FANK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        0      2      2
  FANK1 WILD-TYPE     47     40     56
D15V1, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             2              40
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        1      2      1
  FANK1 WILD-TYPE     53     46     44
D15V2, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             2              46
  CLUS_3             1              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANK1 MUTATED        1      0      0      2
  FANK1 WILD-TYPE     46     14     34     19
D15V3, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              14
  CLUS_3             0              34
  CLUS_4             2              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        1      0      2
  FANK1 WILD-TYPE     48     24     41
D15V4, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             0              24
  CLUS_3             2              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        2      2      0
  FANK1 WILD-TYPE     66     38     39
D15V5, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             2              38
  CLUS_3             0              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FANK1 MUTATED        1      1      0      0      0      2      0
  FANK1 WILD-TYPE     41     25     12     24      8     21     12
D15V6, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             2              21
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        1      3      0
  FANK1 WILD-TYPE     50     53     40
D15V7, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             3              53
  CLUS_3             0              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        2      2      0
  FANK1 WILD-TYPE     66     36     41
D15V8, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             2              36
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        2      2      0
  FANK1 WILD-TYPE     65     34     44
D15V9, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             2              34
  CLUS_3             0              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANK1 MUTATED        0      2      2      0
  FANK1 WILD-TYPE     36     30     36     41
D15V10, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             0              36
  CLUS_2             2              30
  CLUS_3             2              36
  CLUS_4             0              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = MLLT3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        2      0      2
  MLLT3 WILD-TYPE     45     42     56
D16V1, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              42
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        1      2      1
  MLLT3 WILD-TYPE     53     46     44
D16V2, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             2              46
  CLUS_3             1              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT3 MUTATED        0      0      0      1
  MLLT3 WILD-TYPE     47     14     34     20
D16V3, multiclass
[1] "Remove cluster labels:" "MLLT3 MUTATED"         
clus
  MLLT3 MUTATED MLLT3 WILD-TYPE 
              1             115 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAFY      TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAG5      TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAG9      TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGI      TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGN      TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGT      TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGY      TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAH4      TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAHG      TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAKG      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAOL      TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-YU-A90Q      TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-YU-A912      TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-ZM-AA0B      TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        0      0      1
  MLLT3 WILD-TYPE     49     24     42
D16V4, multiclass
[1] "Remove cluster labels:" "MLLT3 MUTATED"         
clus
  MLLT3 MUTATED MLLT3 WILD-TYPE 
              1             115 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAFY      TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAG5      TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAG9      TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGI      TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGN      TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGT      TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGY      TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAH4      TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAHG      TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAKG      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAOL      TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-YU-A90Q      TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-YU-A912      TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-ZM-AA0B      TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        1      2      1
  MLLT3 WILD-TYPE     67     38     38
D16V5, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              67
  CLUS_2             2              38
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLLT3 MUTATED        1      0      0      0      1      1      1
  MLLT3 WILD-TYPE     41     26     12     24      7     22     11
D16V6, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        1      2      1
  MLLT3 WILD-TYPE     50     54     39
D16V7, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              54
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        1      2      1
  MLLT3 WILD-TYPE     67     36     40
D16V8, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              67
  CLUS_2             2              36
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        1      2      1
  MLLT3 WILD-TYPE     66     34     43
D16V9, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              34
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT3 MUTATED        1      0      2      1
  MLLT3 WILD-TYPE     35     32     36     40
D16V10, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              35
  CLUS_2             0              32
  CLUS_3             2              36
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = RHPN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        2      1      3
  RHPN2 WILD-TYPE     45     41     55
D17V1, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              41
  CLUS_3             3              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        1      1      4
  RHPN2 WILD-TYPE     53     47     41
D17V2, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1              47
  CLUS_3             4              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED        3      0      2      1
  RHPN2 WILD-TYPE     44     14     32     20
D17V3, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              14
  CLUS_3             2              32
  CLUS_4             1              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     46     23     41
D17V4, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              46
  CLUS_2             1              23
  CLUS_3             2              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     65     39     37
D17V5, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             1              39
  CLUS_3             2              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHPN2 MUTATED        1      2      0      1      0      1      1
  RHPN2 WILD-TYPE     41     24     12     23      8     22     11
D17V6, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             2              24
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     48     55     38
D17V7, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              55
  CLUS_3             2              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     65     37     39
D17V8, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             1              37
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     64     35     42
D17V9, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             1              35
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED        1      2      1      2
  RHPN2 WILD-TYPE     35     30     37     39
D17V10, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             1              35
  CLUS_2             2              30
  CLUS_3             1              37
  CLUS_4             2              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = SP8 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      1      5
  SP8 WILD-TYPE     47     41     53
D18V1, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            47
  CLUS_2           1            41
  CLUS_3           5            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        1      3      2
  SP8 WILD-TYPE     53     45     43
D18V2, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           1            53
  CLUS_2           3            45
  CLUS_3           2            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP8 MUTATED        0      1      4      0
  SP8 WILD-TYPE     47     13     30     21
D18V3, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            47
  CLUS_2           1            13
  CLUS_3           4            30
  CLUS_4           0            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      3      2
  SP8 WILD-TYPE     49     21     41
D18V4, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            49
  CLUS_2           3            21
  CLUS_3           2            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      2      4
  SP8 WILD-TYPE     68     38     35
D18V5, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            68
  CLUS_2           2            38
  CLUS_3           4            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP8 MUTATED        0      0      1      4      1      0      0
  SP8 WILD-TYPE     42     26     11     20      7     23     12
D18V6, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            42
  CLUS_2           0            26
  CLUS_3           1            11
  CLUS_4           4            20
  CLUS_5           1             7
  CLUS_6           0            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      2      4
  SP8 WILD-TYPE     51     54     36
D18V7, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            51
  CLUS_2           2            54
  CLUS_3           4            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      2      4
  SP8 WILD-TYPE     68     36     37
D18V8, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            68
  CLUS_2           2            36
  CLUS_3           4            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      2      4
  SP8 WILD-TYPE     67     34     40
D18V9, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            67
  CLUS_2           2            34
  CLUS_3           4            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP8 MUTATED        0      0      2      4
  SP8 WILD-TYPE     36     32     36     37
D18V10, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            36
  CLUS_2           0            32
  CLUS_3           2            36
  CLUS_4           4            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = KRTAP1-1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        1      1      1
  KRTAP1-1 WILD-TYPE     46     41     57
D19V1, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                1                 41
  CLUS_3                1                 57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        2      1      0
  KRTAP1-1 WILD-TYPE     52     47     45
D19V2, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                1                 47
  CLUS_3                0                 45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP1-1 MUTATED        1      1      0      0
  KRTAP1-1 WILD-TYPE     46     13     34     21
D19V3, multiclass
[1] "Remove cluster labels:" "KRTAP1-1 MUTATED"      
clus
  KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE 
                 2                114 
        TCGA-2G-AAEW         TCGA-2G-AAEX         TCGA-2G-AAF1 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAF4         TCGA-2G-AAF6         TCGA-2G-AAF8 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFG         TCGA-2G-AAFJ         TCGA-2G-AAFL 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFM         TCGA-2G-AAFN         TCGA-2G-AAFY 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFZ         TCGA-2G-AAG0         TCGA-2G-AAG3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAG5         TCGA-2G-AAG6         TCGA-2G-AAG7 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAG8         TCGA-2G-AAG9         TCGA-2G-AAGC 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGF         TCGA-2G-AAGG         TCGA-2G-AAGI 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGJ         TCGA-2G-AAGK         TCGA-2G-AAGM 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGN         TCGA-2G-AAGO         TCGA-2G-AAGP 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGS         TCGA-2G-AAGT         TCGA-2G-AAGV 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGW         TCGA-2G-AAGX         TCGA-2G-AAGY 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGZ         TCGA-2G-AAH0         TCGA-2G-AAH3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAH4         TCGA-2G-AAH8         TCGA-2G-AAHA 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAHC         TCGA-2G-AAHG         TCGA-2G-AAHL 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAHP         TCGA-2G-AAHT         TCGA-2G-AAKG 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAKH         TCGA-2G-AAKL         TCGA-2G-AAKM 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAKO         TCGA-2G-AAL5         TCGA-2G-AAL7 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALF         TCGA-2G-AALG         TCGA-2G-AALN 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALO         TCGA-2G-AALP         TCGA-2G-AALQ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALS         TCGA-2G-AALT         TCGA-2G-AALW 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALX         TCGA-2G-AALZ         TCGA-2G-AAM2 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAM3         TCGA-2G-AAM4         TCGA-2X-A9D5 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2X-A9D6         TCGA-4K-AA1G         TCGA-4K-AA1H 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-4K-AA1I         TCGA-S6-A8JW         TCGA-S6-A8JX 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-S6-A8JY         TCGA-SN-A6IS         TCGA-SN-A84X 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-SO-A8JP         TCGA-VF-A8A8         TCGA-VF-A8AA 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-VF-A8AE         TCGA-W4-A7U2         TCGA-W4-A7U4 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-X3-A8G4         TCGA-XE-A8H1         TCGA-XE-A8H5 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-A9SE         TCGA-XE-AANI         TCGA-XE-AANJ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AANR         TCGA-XE-AANV         TCGA-XE-AAO3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAO4         TCGA-XE-AAO6         TCGA-XE-AAOB 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAOC         TCGA-XE-AAOD         TCGA-XE-AAOJ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAOL         TCGA-XY-A89B         TCGA-XY-A9T9 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A90P         TCGA-YU-A90Q         TCGA-YU-A90S 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A90W         TCGA-YU-A90Y         TCGA-YU-A912 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A94I         TCGA-YU-AA61         TCGA-ZM-AA05 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-ZM-AA0B         TCGA-ZM-AA0D         TCGA-ZM-AA0E 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        1      1      0
  KRTAP1-1 WILD-TYPE     48     23     43
D19V4, multiclass
[1] "Remove cluster labels:" "KRTAP1-1 MUTATED"      
clus
  KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE 
                 2                114 
        TCGA-2G-AAEW         TCGA-2G-AAEX         TCGA-2G-AAF1 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAF4         TCGA-2G-AAF6         TCGA-2G-AAF8 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFG         TCGA-2G-AAFJ         TCGA-2G-AAFL 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFM         TCGA-2G-AAFN         TCGA-2G-AAFY 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFZ         TCGA-2G-AAG0         TCGA-2G-AAG3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAG5         TCGA-2G-AAG6         TCGA-2G-AAG7 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAG8         TCGA-2G-AAG9         TCGA-2G-AAGC 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGF         TCGA-2G-AAGG         TCGA-2G-AAGI 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGJ         TCGA-2G-AAGK         TCGA-2G-AAGM 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGN         TCGA-2G-AAGO         TCGA-2G-AAGP 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGS         TCGA-2G-AAGT         TCGA-2G-AAGV 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGW         TCGA-2G-AAGX         TCGA-2G-AAGY 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGZ         TCGA-2G-AAH0         TCGA-2G-AAH3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAH4         TCGA-2G-AAH8         TCGA-2G-AAHA 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAHC         TCGA-2G-AAHG         TCGA-2G-AAHL 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAHP         TCGA-2G-AAHT         TCGA-2G-AAKG 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAKH         TCGA-2G-AAKL         TCGA-2G-AAKM 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAKO         TCGA-2G-AAL5         TCGA-2G-AAL7 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALF         TCGA-2G-AALG         TCGA-2G-AALN 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALO         TCGA-2G-AALP         TCGA-2G-AALQ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALS         TCGA-2G-AALT         TCGA-2G-AALW 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALX         TCGA-2G-AALZ         TCGA-2G-AAM2 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAM3         TCGA-2G-AAM4         TCGA-2X-A9D5 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2X-A9D6         TCGA-4K-AA1G         TCGA-4K-AA1H 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-4K-AA1I         TCGA-S6-A8JW         TCGA-S6-A8JX 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-S6-A8JY         TCGA-SN-A6IS         TCGA-SN-A84X 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-SO-A8JP         TCGA-VF-A8A8         TCGA-VF-A8AA 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-VF-A8AE         TCGA-W4-A7U2         TCGA-W4-A7U4 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-X3-A8G4         TCGA-XE-A8H1         TCGA-XE-A8H5 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-A9SE         TCGA-XE-AANI         TCGA-XE-AANJ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AANR         TCGA-XE-AANV         TCGA-XE-AAO3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAO4         TCGA-XE-AAO6         TCGA-XE-AAOB 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAOC         TCGA-XE-AAOD         TCGA-XE-AAOJ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAOL         TCGA-XY-A89B         TCGA-XY-A9T9 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A90P         TCGA-YU-A90Q         TCGA-YU-A90S 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A90W         TCGA-YU-A90Y         TCGA-YU-A912 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A94I         TCGA-YU-AA61         TCGA-ZM-AA05 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-ZM-AA0B         TCGA-ZM-AA0D         TCGA-ZM-AA0E 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        2      1      0
  KRTAP1-1 WILD-TYPE     66     39     39
D19V5, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 66
  CLUS_2                1                 39
  CLUS_3                0                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP1-1 MUTATED        2      0      1      0      0      0      0
  KRTAP1-1 WILD-TYPE     40     26     11     24      8     23     12
D19V6, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 40
  CLUS_2                0                 26
  CLUS_3                1                 11
  CLUS_4                0                 24
  CLUS_5                0                  8
  CLUS_6                0                 23
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        1      2      0
  KRTAP1-1 WILD-TYPE     50     54     40
D19V7, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                2                 54
  CLUS_3                0                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        2      1      0
  KRTAP1-1 WILD-TYPE     66     37     41
D19V8, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 66
  CLUS_2                1                 37
  CLUS_3                0                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        2      1      0
  KRTAP1-1 WILD-TYPE     65     35     44
D19V9, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 65
  CLUS_2                1                 35
  CLUS_3                0                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP1-1 MUTATED        1      1      1      0
  KRTAP1-1 WILD-TYPE     35     31     37     41
D19V10, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                1                 31
  CLUS_3                1                 37
  CLUS_4                0                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = ANKRD11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        3      2      2
  ANKRD11 WILD-TYPE     44     40     56
D20V1, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               2                40
  CLUS_3               2                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        5      0      2
  ANKRD11 WILD-TYPE     49     48     43
D20V2, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               5                49
  CLUS_2               0                48
  CLUS_3               2                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD11 MUTATED        3      1      2      0
  ANKRD11 WILD-TYPE     44     13     32     21
D20V3, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                13
  CLUS_3               2                32
  CLUS_4               0                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        4      1      1
  ANKRD11 WILD-TYPE     45     23     42
D20V4, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               4                45
  CLUS_2               1                23
  CLUS_3               1                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        5      0      2
  ANKRD11 WILD-TYPE     63     40     37
D20V5, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               5                63
  CLUS_2               0                40
  CLUS_3               2                37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD11 MUTATED        3      2      0      1      0      0      1
  ANKRD11 WILD-TYPE     39     24     12     23      8     23     11
D20V6, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                39
  CLUS_2               2                24
  CLUS_3               0                12
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               0                23
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        4      1      2
  ANKRD11 WILD-TYPE     47     55     38
D20V7, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                55
  CLUS_3               2                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        5      0      2
  ANKRD11 WILD-TYPE     63     38     39
D20V8, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               5                63
  CLUS_2               0                38
  CLUS_3               2                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        5      0      2
  ANKRD11 WILD-TYPE     62     36     42
D20V9, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               5                62
  CLUS_2               0                36
  CLUS_3               2                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD11 MUTATED        3      2      0      2
  ANKRD11 WILD-TYPE     33     30     38     39
D20V10, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                33
  CLUS_2               2                30
  CLUS_3               0                38
  CLUS_4               2                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = SPIN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        0      1      2
  SPIN2A WILD-TYPE     47     41     56
D21V1, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              0               47
  CLUS_2              1               41
  CLUS_3              2               56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      1      1
  SPIN2A WILD-TYPE     53     47     44
D21V2, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1               47
  CLUS_3              1               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPIN2A MUTATED        1      0      0      1
  SPIN2A WILD-TYPE     46     14     34     20
D21V3, multiclass
[1] "Remove cluster labels:" "SPIN2A MUTATED"        
clus
  SPIN2A MUTATED SPIN2A WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGM       TCGA-2G-AAGN 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS       TCGA-2G-AAGT 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      0      1
  SPIN2A WILD-TYPE     48     24     42
D21V4, multiclass
[1] "Remove cluster labels:" "SPIN2A MUTATED"        
clus
  SPIN2A MUTATED SPIN2A WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGM       TCGA-2G-AAGN 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS       TCGA-2G-AAGT 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      1      1
  SPIN2A WILD-TYPE     67     39     38
D21V5, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              1               67
  CLUS_2              1               39
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPIN2A MUTATED        0      1      1      1      0      0      0
  SPIN2A WILD-TYPE     42     25     11     23      8     23     12
D21V6, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              0               42
  CLUS_2              1               25
  CLUS_3              1               11
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      1      1
  SPIN2A WILD-TYPE     50     55     39
D21V7, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               55
  CLUS_3              1               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      1      1
  SPIN2A WILD-TYPE     67     37     40
D21V8, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              1               67
  CLUS_2              1               37
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      1      1
  SPIN2A WILD-TYPE     66     35     43
D21V9, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              1               66
  CLUS_2              1               35
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPIN2A MUTATED        0      1      1      1
  SPIN2A WILD-TYPE     36     31     37     40
D21V10, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              0               36
  CLUS_2              1               31
  CLUS_3              1               37
  CLUS_4              1               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = ATXN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        1      0      2
  ATXN3 WILD-TYPE     46     42     56
D22V1, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              42
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     54     46     44
D22V2, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             2              46
  CLUS_3             1              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3 MUTATED        0      1      1      1
  ATXN3 WILD-TYPE     47     13     33     20
D22V3, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              13
  CLUS_3             1              33
  CLUS_4             1              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     49     22     42
D22V4, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             2              22
  CLUS_3             1              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     68     38     38
D22V5, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             2              38
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATXN3 MUTATED        0      0      0      1      1      1      0
  ATXN3 WILD-TYPE     42     26     12     23      7     22     12
D22V6, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             1               7
  CLUS_6             1              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     51     54     39
D22V7, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              54
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     68     36     40
D22V8, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             2              36
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     67     34     43
D22V9, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2              34
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3 MUTATED        0      0      2      1
  ATXN3 WILD-TYPE     36     32     36     40
D22V10, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              36
  CLUS_2             0              32
  CLUS_3             2              36
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = MEF2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     46     41     57
D23V1, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              41
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     53     47     44
D23V2, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1              47
  CLUS_3             1              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEF2A MUTATED        0      1      1      0
  MEF2A WILD-TYPE     47     13     33     21
D23V3, multiclass
[1] "Remove cluster labels:" "MEF2A MUTATED"         
clus
  MEF2A MUTATED MEF2A WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3      TCGA-2G-AAG5 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8      TCGA-2G-AAG9 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG      TCGA-2G-AAGI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM      TCGA-2G-AAGN 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS      TCGA-2G-AAGT 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX      TCGA-2G-AAGY 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3      TCGA-2G-AAH4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC      TCGA-2G-AAHG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT      TCGA-2G-AAKG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ      TCGA-2G-AALS 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX      TCGA-2G-AALZ 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4      TCGA-2X-A9D5 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H      TCGA-4K-AA1I 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY      TCGA-SN-A6IS 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8      TCGA-VF-A8AA 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4      TCGA-X3-A8G4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE      TCGA-XE-AANI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV      TCGA-XE-AAO3 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB      TCGA-XE-AAOC 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ      TCGA-XE-AAOL 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P      TCGA-YU-A90Q 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        0      0      2
  MEF2A WILD-TYPE     49     24     41
D23V4, multiclass
[1] "Remove cluster labels:" "MEF2A MUTATED"         
clus
  MEF2A MUTATED MEF2A WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3      TCGA-2G-AAG5 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8      TCGA-2G-AAG9 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG      TCGA-2G-AAGI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM      TCGA-2G-AAGN 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS      TCGA-2G-AAGT 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX      TCGA-2G-AAGY 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3      TCGA-2G-AAH4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC      TCGA-2G-AAHG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT      TCGA-2G-AAKG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ      TCGA-2G-AALS 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX      TCGA-2G-AALZ 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4      TCGA-2X-A9D5 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H      TCGA-4K-AA1I 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY      TCGA-SN-A6IS 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8      TCGA-VF-A8AA 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4      TCGA-X3-A8G4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE      TCGA-XE-AANI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV      TCGA-XE-AAO3 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB      TCGA-XE-AAOC 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ      TCGA-XE-AAOL 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P      TCGA-YU-A90Q 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     67     39     38
D23V5, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              67
  CLUS_2             1              39
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MEF2A MUTATED        0      1      1      0      0      1      0
  MEF2A WILD-TYPE     42     25     11     24      8     22     12
D23V6, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             0              42
  CLUS_2             1              25
  CLUS_3             1              11
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     50     55     39
D23V7, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              55
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     67     37     40
D23V8, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              67
  CLUS_2             1              37
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     66     35     43
D23V9, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              66
  CLUS_2             1              35
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEF2A MUTATED        0      1      1      1
  MEF2A WILD-TYPE     36     31     37     40
D23V10, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             0              36
  CLUS_2             1              31
  CLUS_3             1              37
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = SSBP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        1      0      2
  SSBP3 WILD-TYPE     46     42     56
D24V1, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              42
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     54     46     44
D24V2, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             2              46
  CLUS_3             1              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSBP3 MUTATED        0      0      0      2
  SSBP3 WILD-TYPE     47     14     34     19
D24V3, multiclass
[1] "Remove cluster labels:" "SSBP3 MUTATED"         
clus
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFN      TCGA-2G-AAFY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3      TCGA-2G-AAG5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8      TCGA-2G-AAG9 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG      TCGA-2G-AAGI 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM      TCGA-2G-AAGN 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS      TCGA-2G-AAGT 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX      TCGA-2G-AAGY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3      TCGA-2G-AAH4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC      TCGA-2G-AAHG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT      TCGA-2G-AAKG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAOL      TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90Q 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      0      2
  SSBP3 WILD-TYPE     49     24     41
D24V4, multiclass
[1] "Remove cluster labels:" "SSBP3 MUTATED"         
clus
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFN      TCGA-2G-AAFY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3      TCGA-2G-AAG5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8      TCGA-2G-AAG9 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG      TCGA-2G-AAGI 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM      TCGA-2G-AAGN 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS      TCGA-2G-AAGT 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX      TCGA-2G-AAGY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3      TCGA-2G-AAH4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC      TCGA-2G-AAHG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT      TCGA-2G-AAKG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAOL      TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90Q 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     68     38     38
D24V5, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             2              38
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SSBP3 MUTATED        0      0      0      0      1      1      1
  SSBP3 WILD-TYPE     42     26     12     24      7     22     11
D24V6, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     51     54     39
D24V7, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              54
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     68     36     40
D24V8, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             2              36
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     67     34     43
D24V9, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2              34
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSBP3 MUTATED        0      0      2      1
  SSBP3 WILD-TYPE     36     32     36     40
D24V10, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              36
  CLUS_2             0              32
  CLUS_3             2              36
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = KRTAP10-10 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        2      1      2
  KRTAP10-10 WILD-TYPE     45     41     56
D25V1, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  2                   45
  CLUS_2                  1                   41
  CLUS_3                  2                   56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      1      1
  KRTAP10-10 WILD-TYPE     51     47     44
D25V2, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   51
  CLUS_2                  1                   47
  CLUS_3                  1                   44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-10 MUTATED        3      0      1      0
  KRTAP10-10 WILD-TYPE     44     14     33     21
D25V3, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   44
  CLUS_2                  0                   14
  CLUS_3                  1                   33
  CLUS_4                  0                   21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      1
  KRTAP10-10 WILD-TYPE     46     24     42
D25V4, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   46
  CLUS_2                  0                   24
  CLUS_3                  1                   42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      2
  KRTAP10-10 WILD-TYPE     65     40     37
D25V5, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   65
  CLUS_2                  0                   40
  CLUS_3                  2                   37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP10-10 MUTATED        2      1      0      1      0      0      1
  KRTAP10-10 WILD-TYPE     40     25     12     23      8     23     11
D25V6, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  2                   40
  CLUS_2                  1                   25
  CLUS_3                  0                   12
  CLUS_4                  1                   23
  CLUS_5                  0                    8
  CLUS_6                  0                   23
  CLUS_7                  1                   11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      2
  KRTAP10-10 WILD-TYPE     48     56     38
D25V7, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   48
  CLUS_2                  0                   56
  CLUS_3                  2                   38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      2
  KRTAP10-10 WILD-TYPE     65     38     39
D25V8, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   65
  CLUS_2                  0                   38
  CLUS_3                  2                   39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      2
  KRTAP10-10 WILD-TYPE     64     36     42
D25V9, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   64
  CLUS_2                  0                   36
  CLUS_3                  2                   42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-10 MUTATED        2      1      0      2
  KRTAP10-10 WILD-TYPE     34     31     38     39
D25V10, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  2                   34
  CLUS_2                  1                   31
  CLUS_3                  0                   38
  CLUS_4                  2                   39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = BCL11B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        3      1      1
  BCL11B WILD-TYPE     44     41     57
D26V1, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               41
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        3      0      2
  BCL11B WILD-TYPE     51     48     43
D26V2, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               48
  CLUS_3              2               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL11B MUTATED        2      1      1      0
  BCL11B WILD-TYPE     45     13     33     21
D26V3, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               13
  CLUS_3              1               33
  CLUS_4              0               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        3      0      1
  BCL11B WILD-TYPE     46     24     42
D26V4, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               46
  CLUS_2              0               24
  CLUS_3              1               42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        4      0      1
  BCL11B WILD-TYPE     64     40     38
D26V5, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              4               64
  CLUS_2              0               40
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCL11B MUTATED        3      1      0      1      0      0      0
  BCL11B WILD-TYPE     39     25     12     23      8     23     12
D26V6, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               39
  CLUS_2              1               25
  CLUS_3              0               12
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        3      1      1
  BCL11B WILD-TYPE     48     55     39
D26V7, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               55
  CLUS_3              1               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        4      0      1
  BCL11B WILD-TYPE     64     38     40
D26V8, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              4               64
  CLUS_2              0               38
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        4      0      1
  BCL11B WILD-TYPE     63     36     43
D26V9, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              4               63
  CLUS_2              0               36
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL11B MUTATED        2      2      0      1
  BCL11B WILD-TYPE     34     30     38     40
D26V10, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              2               34
  CLUS_2              2               30
  CLUS_3              0               38
  CLUS_4              1               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = FAM101B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        1      1      2
  FAM101B WILD-TYPE     46     41     56
D27V1, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                41
  CLUS_3               2                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        1      1      2
  FAM101B WILD-TYPE     53     47     43
D27V2, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                47
  CLUS_3               2                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM101B MUTATED        2      0      1      0
  FAM101B WILD-TYPE     45     14     33     21
D27V3, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                14
  CLUS_3               1                33
  CLUS_4               0                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        2      0      1
  FAM101B WILD-TYPE     47     24     42
D27V4, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                47
  CLUS_2               0                24
  CLUS_3               1                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        2      1      1
  FAM101B WILD-TYPE     66     39     38
D27V5, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                66
  CLUS_2               1                39
  CLUS_3               1                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM101B MUTATED        0      2      0      1      0      1      0
  FAM101B WILD-TYPE     42     24     12     23      8     22     12
D27V6, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               0                42
  CLUS_2               2                24
  CLUS_3               0                12
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        1      2      1
  FAM101B WILD-TYPE     50     54     39
D27V7, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                54
  CLUS_3               1                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        2      1      1
  FAM101B WILD-TYPE     66     37     40
D27V8, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                66
  CLUS_2               1                37
  CLUS_3               1                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        2      1      1
  FAM101B WILD-TYPE     65     35     43
D27V9, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                65
  CLUS_2               1                35
  CLUS_3               1                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM101B MUTATED        1      1      1      1
  FAM101B WILD-TYPE     35     31     37     40
D27V10, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               1                35
  CLUS_2               1                31
  CLUS_3               1                37
  CLUS_4               1                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = PSMD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        1      3      0
  PSMD11 WILD-TYPE     46     39     58
D28V1, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              3               39
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        4      0      0
  PSMD11 WILD-TYPE     50     48     45
D28V2, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               48
  CLUS_3              0               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        3      0      0      0
  PSMD11 WILD-TYPE     44     14     34     21
D28V3, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               14
  CLUS_3              0               34
  CLUS_4              0               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        3      0      0
  PSMD11 WILD-TYPE     46     24     43
D28V4, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              3               46
  CLUS_2              0               24
  CLUS_3              0               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        4      0      0
  PSMD11 WILD-TYPE     64     40     39
D28V5, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              4               64
  CLUS_2              0               40
  CLUS_3              0               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMD11 MUTATED        2      2      0      0      0      0      0
  PSMD11 WILD-TYPE     40     24     12     24      8     23     12
D28V6, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               40
  CLUS_2              2               24
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        3      1      0
  PSMD11 WILD-TYPE     48     55     40
D28V7, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               55
  CLUS_3              0               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        4      0      0
  PSMD11 WILD-TYPE     64     38     41
D28V8, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              4               64
  CLUS_2              0               38
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        3      1      0
  PSMD11 WILD-TYPE     64     35     44
D28V9, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              1               35
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        2      2      0      0
  PSMD11 WILD-TYPE     34     30     38     41
D28V10, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               34
  CLUS_2              2               30
  CLUS_3              0               38
  CLUS_4              0               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = FAM8A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        2      0      1
  FAM8A1 WILD-TYPE     45     42     57
D29V1, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               42
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        3      0      0
  FAM8A1 WILD-TYPE     51     48     45
D29V2, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               48
  CLUS_3              0               45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM8A1 MUTATED        1      0      0      0
  FAM8A1 WILD-TYPE     46     14     34     21
D29V3, multiclass
[1] "Remove cluster labels:" "FAM8A1 MUTATED"        
clus
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               1              115 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGY       TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAH4       TCGA-2G-AAH8       TCGA-2G-AAHC       TCGA-2G-AAHG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-VF-A8AA       TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-X3-A8G4       TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AANI       TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAO3       TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAOC       TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAOL       TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-YU-A90Q       TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-YU-A912       TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-ZM-AA0B       TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        1      0      0
  FAM8A1 WILD-TYPE     48     24     43
D29V4, multiclass
[1] "Remove cluster labels:" "FAM8A1 MUTATED"        
clus
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               1              115 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGY       TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAH4       TCGA-2G-AAH8       TCGA-2G-AAHC       TCGA-2G-AAHG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-VF-A8AA       TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-X3-A8G4       TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AANI       TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAO3       TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAOC       TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAOL       TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-YU-A90Q       TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-YU-A912       TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-ZM-AA0B       TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        3      0      0
  FAM8A1 WILD-TYPE     65     40     39
D29V5, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              0               40
  CLUS_3              0               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM8A1 MUTATED        3      0      0      0      0      0      0
  FAM8A1 WILD-TYPE     39     26     12     24      8     23     12
D29V6, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               39
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        3      0      0
  FAM8A1 WILD-TYPE     48     56     40
D29V7, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               56
  CLUS_3              0               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        3      0      0
  FAM8A1 WILD-TYPE     65     38     41
D29V8, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              0               38
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        3      0      0
  FAM8A1 WILD-TYPE     64     36     44
D29V9, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              0               36
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM8A1 MUTATED        3      0      0      0
  FAM8A1 WILD-TYPE     33     32     38     41
D29V10, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               33
  CLUS_2              0               32
  CLUS_3              0               38
  CLUS_4              0               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = SPTAN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      0      4
  SPTAN1 WILD-TYPE     47     42     54
D30V1, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              0               42
  CLUS_3              4               54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      2      2
  SPTAN1 WILD-TYPE     54     46     43
D30V2, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              2               46
  CLUS_3              2               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        0      0      2      0
  SPTAN1 WILD-TYPE     47     14     32     21
D30V3, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALN 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ       TCGA-2G-AALS 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX       TCGA-2G-AALZ 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4       TCGA-2X-A9D5 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H       TCGA-4K-AA1I 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY       TCGA-SN-A6IS 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      2      0
  SPTAN1 WILD-TYPE     49     22     43
D30V4, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALN 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ       TCGA-2G-AALS 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX       TCGA-2G-AALZ 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4       TCGA-2X-A9D5 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H       TCGA-4K-AA1I 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY       TCGA-SN-A6IS 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      0      4
  SPTAN1 WILD-TYPE     68     40     35
D30V5, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               68
  CLUS_2              0               40
  CLUS_3              4               35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPTAN1 MUTATED        0      0      0      4      0      0      0
  SPTAN1 WILD-TYPE     42     26     12     20      8     23     12
D30V6, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               42
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              4               20
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      0      4
  SPTAN1 WILD-TYPE     51     56     36
D30V7, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              0               56
  CLUS_3              4               36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      0      4
  SPTAN1 WILD-TYPE     68     38     37
D30V8, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               68
  CLUS_2              0               38
  CLUS_3              4               37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      0      4
  SPTAN1 WILD-TYPE     67     36     40
D30V9, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               67
  CLUS_2              0               36
  CLUS_3              4               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        0      0      0      4
  SPTAN1 WILD-TYPE     36     32     38     37
D30V10, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              0               36
  CLUS_2              0               32
  CLUS_3              0               38
  CLUS_4              4               37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = CRB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRB2 MUTATED        1      3      2
  CRB2 WILD-TYPE     46     39     56
D31V1, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            3             39
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRB2 MUTATED        2      1      3
  CRB2 WILD-TYPE     52     47     42
D31V2, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1             47
  CLUS_3            3             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRB2 MUTATED        4      0      1      1
  CRB2 WILD-TYPE     43     14     33     20
D31V3, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             14
  CLUS_3            1             33
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRB2 MUTATED        4      1      1
  CRB2 WILD-TYPE     45     23     42
D31V4, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            4             45
  CLUS_2            1             23
  CLUS_3            1             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRB2 MUTATED        4      1      1
  CRB2 WILD-TYPE     64     39     38
D31V5, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            4             64
  CLUS_2            1             39
  CLUS_3            1             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CRB2 MUTATED        1      3      1      1      0      0      0
  CRB2 WILD-TYPE     41     23     11     23      8     23     12
D31V6, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            3             23
  CLUS_3            1             11
  CLUS_4            1             23
  CLUS_5            0              8
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRB2 MUTATED        1      4      1
  CRB2 WILD-TYPE     50     52     39
D31V7, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            4             52
  CLUS_3            1             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRB2 MUTATED        4      1      1
  CRB2 WILD-TYPE     64     37     40
D31V8, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            4             64
  CLUS_2            1             37
  CLUS_3            1             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRB2 MUTATED        4      1      1
  CRB2 WILD-TYPE     63     35     43
D31V9, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            4             63
  CLUS_2            1             35
  CLUS_3            1             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRB2 MUTATED        0      4      1      1
  CRB2 WILD-TYPE     36     28     37     40
D31V10, multiclass
        clus
vv       CRB2 MUTATED CRB2 WILD-TYPE
  CLUS_1            0             36
  CLUS_2            4             28
  CLUS_3            1             37
  CLUS_4            1             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = OPLAH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      1      1
  OPLAH WILD-TYPE     45     41     57
D32V1, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              41
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      2      0
  OPLAH WILD-TYPE     52     46     45
D32V2, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2              46
  CLUS_3             0              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        1      1      1      0
  OPLAH WILD-TYPE     46     13     33     21
D32V3, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              13
  CLUS_3             1              33
  CLUS_4             0              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        1      1      1
  OPLAH WILD-TYPE     48     23     42
D32V4, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              48
  CLUS_2             1              23
  CLUS_3             1              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      1      1
  OPLAH WILD-TYPE     66     39     38
D32V5, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              39
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OPLAH MUTATED        1      1      1      0      1      0      0
  OPLAH WILD-TYPE     41     25     11     24      7     23     12
D32V6, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             1              11
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             0              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      2      0
  OPLAH WILD-TYPE     49     54     40
D32V7, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              54
  CLUS_3             0              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      2      0
  OPLAH WILD-TYPE     66     36     41
D32V8, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              66
  CLUS_2             2              36
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      1      1
  OPLAH WILD-TYPE     65     35     43
D32V9, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        1      1      2      0
  OPLAH WILD-TYPE     35     31     36     41
D32V10, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              35
  CLUS_2             1              31
  CLUS_3             2              36
  CLUS_4             0              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = C22ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        0      2      1
  C22ORF43 WILD-TYPE     47     40     57
D33V1, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                2                 40
  CLUS_3                1                 57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     53     47     44
D33V2, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                 47
  CLUS_3                1                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C22ORF43 MUTATED        1      2      0      0
  C22ORF43 WILD-TYPE     46     12     34     21
D33V3, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                2                 12
  CLUS_3                0                 34
  CLUS_4                0                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     48     23     42
D33V4, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 48
  CLUS_2                1                 23
  CLUS_3                1                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     67     39     38
D33V5, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 67
  CLUS_2                1                 39
  CLUS_3                1                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C22ORF43 MUTATED        0      1      0      1      0      1      0
  C22ORF43 WILD-TYPE     42     25     12     23      8     22     12
D33V6, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                0                 42
  CLUS_2                1                 25
  CLUS_3                0                 12
  CLUS_4                1                 23
  CLUS_5                0                  8
  CLUS_6                1                 22
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     50     55     39
D33V7, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 55
  CLUS_3                1                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     67     37     40
D33V8, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 67
  CLUS_2                1                 37
  CLUS_3                1                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     66     35     43
D33V9, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 66
  CLUS_2                1                 35
  CLUS_3                1                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C22ORF43 MUTATED        1      0      1      1
  C22ORF43 WILD-TYPE     35     32     37     40
D33V10, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                0                 32
  CLUS_3                1                 37
  CLUS_4                1                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = GAS2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        1      1      1
  GAS2L2 WILD-TYPE     46     41     57
D34V1, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               41
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        0      1      2
  GAS2L2 WILD-TYPE     54     47     43
D34V2, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              1               47
  CLUS_3              2               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS2L2 MUTATED        1      0      1      1
  GAS2L2 WILD-TYPE     46     14     33     20
D34V3, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               14
  CLUS_3              1               33
  CLUS_4              1               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        1      0      2
  GAS2L2 WILD-TYPE     48     24     41
D34V4, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              0               24
  CLUS_3              2               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        1      1      1
  GAS2L2 WILD-TYPE     67     39     38
D34V5, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               67
  CLUS_2              1               39
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAS2L2 MUTATED        1      0      0      1      1      0      0
  GAS2L2 WILD-TYPE     41     26     12     23      7     23     12
D34V6, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               41
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              1               23
  CLUS_5              1                7
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        1      1      1
  GAS2L2 WILD-TYPE     50     55     39
D34V7, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               55
  CLUS_3              1               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        1      1      1
  GAS2L2 WILD-TYPE     67     37     40
D34V8, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               67
  CLUS_2              1               37
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAS2L2 MUTATED        1      1      1
  GAS2L2 WILD-TYPE     66     35     43
D34V9, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               66
  CLUS_2              1               35
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS2L2 MUTATED        1      0      1      1
  GAS2L2 WILD-TYPE     35     32     37     40
D34V10, multiclass
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  CLUS_1              1               35
  CLUS_2              0               32
  CLUS_3              1               37
  CLUS_4              1               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = CDC27 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        2      4      0
  CDC27 WILD-TYPE     45     38     58
D35V1, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             4              38
  CLUS_3             0              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        3      1      2
  CDC27 WILD-TYPE     51     47     43
D35V2, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1              47
  CLUS_3             2              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        4      1      0      0
  CDC27 WILD-TYPE     43     13     34     21
D35V3, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             1              13
  CLUS_3             0              34
  CLUS_4             0              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        4      1      0
  CDC27 WILD-TYPE     45     23     43
D35V4, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             4              45
  CLUS_2             1              23
  CLUS_3             0              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        5      1      0
  CDC27 WILD-TYPE     63     39     39
D35V5, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             5              63
  CLUS_2             1              39
  CLUS_3             0              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC27 MUTATED        1      4      0      0      1      0      0
  CDC27 WILD-TYPE     41     22     12     24      7     23     12
D35V6, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             4              22
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             0              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        3      3      0
  CDC27 WILD-TYPE     48     53     40
D35V7, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              53
  CLUS_3             0              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        5      1      0
  CDC27 WILD-TYPE     63     37     41
D35V8, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             5              63
  CLUS_2             1              37
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        5      1      0
  CDC27 WILD-TYPE     62     35     44
D35V9, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             1              35
  CLUS_3             0              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        1      4      1      0
  CDC27 WILD-TYPE     35     28     37     41
D35V10, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              35
  CLUS_2             4              28
  CLUS_3             1              37
  CLUS_4             0              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = MUC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        4      7      5
  MUC2 WILD-TYPE     43     35     53
D36V1, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            7             35
  CLUS_3            5             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        5      6      5
  MUC2 WILD-TYPE     49     42     40
D36V2, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            6             42
  CLUS_3            5             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED        4      0      6      1
  MUC2 WILD-TYPE     43     14     28     20
D36V3, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             14
  CLUS_3            6             28
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        4      4      3
  MUC2 WILD-TYPE     45     20     40
D36V4, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             45
  CLUS_2            4             20
  CLUS_3            3             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        7      3      6
  MUC2 WILD-TYPE     61     37     33
D36V5, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            7             61
  CLUS_2            3             37
  CLUS_3            6             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC2 MUTATED        4      3      1      3      1      2      2
  MUC2 WILD-TYPE     38     23     11     21      7     21     10
D36V6, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             38
  CLUS_2            3             23
  CLUS_3            1             11
  CLUS_4            3             21
  CLUS_5            1              7
  CLUS_6            2             21
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        7      4      5
  MUC2 WILD-TYPE     44     52     35
D36V7, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            7             44
  CLUS_2            4             52
  CLUS_3            5             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        7      4      5
  MUC2 WILD-TYPE     61     34     36
D36V8, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            7             61
  CLUS_2            4             34
  CLUS_3            5             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        7      3      6
  MUC2 WILD-TYPE     60     33     38
D36V9, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            7             60
  CLUS_2            3             33
  CLUS_3            6             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED        5      2      4      5
  MUC2 WILD-TYPE     31     30     34     36
D36V10, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            5             31
  CLUS_2            2             30
  CLUS_3            4             34
  CLUS_4            5             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = TPTE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        2      2      1
  TPTE2 WILD-TYPE     45     40     57
D37V1, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              40
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        2      0      3
  TPTE2 WILD-TYPE     52     48     42
D37V2, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              48
  CLUS_3             3              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        2      0      1      0
  TPTE2 WILD-TYPE     45     14     33     21
D37V3, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              14
  CLUS_3             1              33
  CLUS_4             0              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        2      0      1
  TPTE2 WILD-TYPE     47     24     42
D37V4, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             0              24
  CLUS_3             1              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        4      0      1
  TPTE2 WILD-TYPE     64     40     38
D37V5, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              64
  CLUS_2             0              40
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPTE2 MUTATED        3      1      0      0      0      0      1
  TPTE2 WILD-TYPE     39     25     12     24      8     23     11
D37V6, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              39
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        4      0      1
  TPTE2 WILD-TYPE     47     56     39
D37V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              56
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        4      0      1
  TPTE2 WILD-TYPE     64     38     40
D37V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              64
  CLUS_2             0              38
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        4      0      1
  TPTE2 WILD-TYPE     63     36     43
D37V9, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             0              36
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        2      2      0      1
  TPTE2 WILD-TYPE     34     30     38     40
D37V10, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              34
  CLUS_2             2              30
  CLUS_3             0              38
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = NAT10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        0      2      2
  NAT10 WILD-TYPE     47     40     56
D38V1, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             2              40
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        2      1      1
  NAT10 WILD-TYPE     52     47     44
D38V2, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1              47
  CLUS_3             1              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAT10 MUTATED        1      0      1      1
  NAT10 WILD-TYPE     46     14     33     20
D38V3, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              14
  CLUS_3             1              33
  CLUS_4             1              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        1      0      2
  NAT10 WILD-TYPE     48     24     41
D38V4, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             0              24
  CLUS_3             2              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        2      1      1
  NAT10 WILD-TYPE     66     39     38
D38V5, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              39
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAT10 MUTATED        0      2      0      0      0      1      1
  NAT10 WILD-TYPE     42     24     12     24      8     22     11
D38V6, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             2              24
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        2      1      1
  NAT10 WILD-TYPE     49     55     39
D38V7, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              55
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        2      1      1
  NAT10 WILD-TYPE     66     37     40
D38V8, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              37
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        2      1      1
  NAT10 WILD-TYPE     65     35     43
D38V9, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAT10 MUTATED        0      2      1      1
  NAT10 WILD-TYPE     36     30     37     40
D38V10, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             0              36
  CLUS_2             2              30
  CLUS_3             1              37
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = INTS4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        1      1      1
  INTS4 WILD-TYPE     46     41     57
D39V1, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              41
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        1      1      1
  INTS4 WILD-TYPE     53     47     44
D39V2, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1              47
  CLUS_3             1              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS4 MUTATED        1      1      0      0
  INTS4 WILD-TYPE     46     13     34     21
D39V3, multiclass
[1] "Remove cluster labels:" "INTS4 MUTATED"         
clus
  INTS4 MUTATED INTS4 WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAFY      TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAG5      TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAG9      TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAGI      TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAGN      TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAGT      TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAGY      TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAH4      TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAHG      TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAKG      TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAKO      TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AALG      TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AALQ      TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AALX      TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAM4      TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-4K-AA1H      TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-S6-A8JY      TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-VF-A8A8      TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-W4-A7U4      TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A9SE 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOF      TCGA-XE-AAOJ      TCGA-XE-AAOL 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P      TCGA-YU-A90Q 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        1      1      0
  INTS4 WILD-TYPE     48     23     43
D39V4, multiclass
[1] "Remove cluster labels:" "INTS4 MUTATED"         
clus
  INTS4 MUTATED INTS4 WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAFY      TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAG5      TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAG9      TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAGI      TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAGN      TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAGT      TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAGY      TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAH4      TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAHG      TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAKG      TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAKO      TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AALG      TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AALQ      TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AALX      TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-2G-AAM4      TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-4K-AA1H      TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-S6-A8JY      TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-VF-A8A8      TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-W4-A7U4      TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A9SE 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOF      TCGA-XE-AAOJ      TCGA-XE-AAOL 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P      TCGA-YU-A90Q 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"INTS4 WILD-TYPE" "INTS4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        2      1      0
  INTS4 WILD-TYPE     66     39     39
D39V5, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              39
  CLUS_3             0              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INTS4 MUTATED        1      1      0      0      0      1      0
  INTS4 WILD-TYPE     41     25     12     24      8     22     12
D39V6, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        2      1      0
  INTS4 WILD-TYPE     49     55     40
D39V7, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              55
  CLUS_3             0              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        2      1      0
  INTS4 WILD-TYPE     66     37     41
D39V8, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              37
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        2      1      0
  INTS4 WILD-TYPE     65     35     44
D39V9, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             0              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS4 MUTATED        1      1      1      0
  INTS4 WILD-TYPE     35     31     37     41
D39V10, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             1              35
  CLUS_2             1              31
  CLUS_3             1              37
  CLUS_4             0              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = TTC38 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        0      2      2
  TTC38 WILD-TYPE     47     40     56
D40V1, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             2              40
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        1      0      3
  TTC38 WILD-TYPE     53     48     42
D40V2, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              48
  CLUS_3             3              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC38 MUTATED        2      0      2      0
  TTC38 WILD-TYPE     45     14     32     21
D40V3, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              14
  CLUS_3             2              32
  CLUS_4             0              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      2      0
  TTC38 WILD-TYPE     47     22     43
D40V4, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             2              22
  CLUS_3             0              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      0      2
  TTC38 WILD-TYPE     66     40     37
D40V5, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             0              40
  CLUS_3             2              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTC38 MUTATED        1      1      0      2      0      0      0
  TTC38 WILD-TYPE     41     25     12     22      8     23     12
D40V6, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             2              22
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      0      2
  TTC38 WILD-TYPE     49     56     38
D40V7, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              56
  CLUS_3             2              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      0      2
  TTC38 WILD-TYPE     66     38     39
D40V8, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             0              38
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      0      2
  TTC38 WILD-TYPE     65     36     42
D40V9, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             0              36
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC38 MUTATED        0      2      0      2
  TTC38 WILD-TYPE     36     30     38     39
D40V10, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             0              36
  CLUS_2             2              30
  CLUS_3             0              38
  CLUS_4             2              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = RBM3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        0      2      1
  RBM3 WILD-TYPE     47     40     57
D41V1, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            2             40
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        2      1      0
  RBM3 WILD-TYPE     52     47     45
D41V2, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1             47
  CLUS_3            0             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM3 MUTATED        0      0      0      0
  RBM3 WILD-TYPE     47     14     34     21
D41V3, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        0      0      0
  RBM3 WILD-TYPE     49     24     43
D41V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        2      1      0
  RBM3 WILD-TYPE     66     39     39
D41V5, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             39
  CLUS_3            0             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM3 MUTATED        1      1      0      0      0      1      0
  RBM3 WILD-TYPE     41     25     12     24      8     22     12
D41V6, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        0      3      0
  RBM3 WILD-TYPE     51     53     40
D41V7, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            3             53
  CLUS_3            0             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        2      1      0
  RBM3 WILD-TYPE     66     37     41
D41V8, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             37
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        2      1      0
  RBM3 WILD-TYPE     65     35     44
D41V9, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM3 MUTATED        0      2      1      0
  RBM3 WILD-TYPE     36     30     37     41
D41V10, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            0             36
  CLUS_2            2             30
  CLUS_3            1             37
  CLUS_4            0             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = TCHH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHH MUTATED        3      1      1
  TCHH WILD-TYPE     44     41     57
D42V1, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             41
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHH MUTATED        4      1      0
  TCHH WILD-TYPE     50     47     45
D42V2, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            4             50
  CLUS_2            1             47
  CLUS_3            0             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCHH MUTATED        1      2      0      1
  TCHH WILD-TYPE     46     12     34     20
D42V3, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            1             46
  CLUS_2            2             12
  CLUS_3            0             34
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHH MUTATED        3      0      1
  TCHH WILD-TYPE     46     24     42
D42V4, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            3             46
  CLUS_2            0             24
  CLUS_3            1             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHH MUTATED        4      1      0
  TCHH WILD-TYPE     64     39     39
D42V5, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            4             64
  CLUS_2            1             39
  CLUS_3            0             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCHH MUTATED        3      1      0      0      0      1      0
  TCHH WILD-TYPE     39     25     12     24      8     22     12
D42V6, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            3             39
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHH MUTATED        3      2      0
  TCHH WILD-TYPE     48     54     40
D42V7, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             54
  CLUS_3            0             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHH MUTATED        4      1      0
  TCHH WILD-TYPE     64     37     41
D42V8, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            4             64
  CLUS_2            1             37
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHH MUTATED        4      1      0
  TCHH WILD-TYPE     63     35     44
D42V9, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            4             63
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCHH MUTATED        2      2      1      0
  TCHH WILD-TYPE     34     30     37     41
D42V10, multiclass
        clus
vv       TCHH MUTATED TCHH WILD-TYPE
  CLUS_1            2             34
  CLUS_2            2             30
  CLUS_3            1             37
  CLUS_4            0             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = ZC3H11A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        3      0      0
  ZC3H11A WILD-TYPE     44     42     58
D43V1, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                42
  CLUS_3               0                58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      1      0
  ZC3H11A WILD-TYPE     52     47     45
D43V2, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                47
  CLUS_3               0                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        1      1      0      0
  ZC3H11A WILD-TYPE     46     13     34     21
D43V3, multiclass
[1] "Remove cluster labels:" "ZC3H11A MUTATED"       
clus
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                2               114 
       TCGA-2G-AAEW        TCGA-2G-AAEX        TCGA-2G-AAF1        TCGA-2G-AAF4 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAF6        TCGA-2G-AAF8        TCGA-2G-AAFG        TCGA-2G-AAFI 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAFJ        TCGA-2G-AAFL        TCGA-2G-AAFM        TCGA-2G-AAFN 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAFY        TCGA-2G-AAFZ        TCGA-2G-AAG0        TCGA-2G-AAG3 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAG5        TCGA-2G-AAG6        TCGA-2G-AAG7        TCGA-2G-AAG8 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAG9        TCGA-2G-AAGC        TCGA-2G-AAGF        TCGA-2G-AAGG 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAGI        TCGA-2G-AAGJ        TCGA-2G-AAGK        TCGA-2G-AAGM 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAGN        TCGA-2G-AAGO        TCGA-2G-AAGP        TCGA-2G-AAGS 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAGT        TCGA-2G-AAGV        TCGA-2G-AAGW        TCGA-2G-AAGX 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAGY        TCGA-2G-AAGZ        TCGA-2G-AAH0        TCGA-2G-AAH3 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAH4        TCGA-2G-AAH8        TCGA-2G-AAHA        TCGA-2G-AAHC 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAHG        TCGA-2G-AAHL        TCGA-2G-AAHP        TCGA-2G-AAHT 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAKG        TCGA-2G-AAKH        TCGA-2G-AAKL        TCGA-2G-AAKM 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAKO        TCGA-2G-AAL5        TCGA-2G-AAL7        TCGA-2G-AALF 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AALG        TCGA-2G-AALN        TCGA-2G-AALO        TCGA-2G-AALP 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AALQ        TCGA-2G-AALS        TCGA-2G-AALT        TCGA-2G-AALW 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AALX        TCGA-2G-AALZ        TCGA-2G-AAM2        TCGA-2G-AAM3 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAM4        TCGA-2X-A9D5        TCGA-2X-A9D6        TCGA-4K-AA1G 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-4K-AA1H        TCGA-4K-AA1I        TCGA-S6-A8JW        TCGA-S6-A8JX 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-S6-A8JY        TCGA-SN-A6IS        TCGA-SN-A84X        TCGA-SO-A8JP 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-VF-A8A8        TCGA-VF-A8AA        TCGA-VF-A8AE        TCGA-W4-A7U2 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-W4-A7U4        TCGA-X3-A8G4        TCGA-XE-A8H1        TCGA-XE-A8H5 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-XE-A9SE        TCGA-XE-AANI        TCGA-XE-AANJ        TCGA-XE-AANR 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-XE-AANV        TCGA-XE-AAO3        TCGA-XE-AAO4        TCGA-XE-AAO6 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-XE-AAOB        TCGA-XE-AAOC        TCGA-XE-AAOD        TCGA-XE-AAOF 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-XE-AAOJ        TCGA-XE-AAOL        TCGA-XY-A89B        TCGA-XY-A9T9 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-YU-A90P        TCGA-YU-A90Q        TCGA-YU-A90W        TCGA-YU-A90Y 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-YU-A912        TCGA-YU-A94I        TCGA-YU-AA61        TCGA-ZM-AA0B 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-ZM-AA0D        TCGA-ZM-AA0E 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      0      0
  ZC3H11A WILD-TYPE     47     24     43
D43V4, multiclass
[1] "Remove cluster labels:" "ZC3H11A MUTATED"       
clus
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                2               114 
       TCGA-2G-AAEW        TCGA-2G-AAEX        TCGA-2G-AAF1        TCGA-2G-AAF4 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAF6        TCGA-2G-AAF8        TCGA-2G-AAFG        TCGA-2G-AAFI 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAFJ        TCGA-2G-AAFL        TCGA-2G-AAFM        TCGA-2G-AAFN 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAFY        TCGA-2G-AAFZ        TCGA-2G-AAG0        TCGA-2G-AAG3 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAG5        TCGA-2G-AAG6        TCGA-2G-AAG7        TCGA-2G-AAG8 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAG9        TCGA-2G-AAGC        TCGA-2G-AAGF        TCGA-2G-AAGG 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAGI        TCGA-2G-AAGJ        TCGA-2G-AAGK        TCGA-2G-AAGM 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAGN        TCGA-2G-AAGO        TCGA-2G-AAGP        TCGA-2G-AAGS 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAGT        TCGA-2G-AAGV        TCGA-2G-AAGW        TCGA-2G-AAGX 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAGY        TCGA-2G-AAGZ        TCGA-2G-AAH0        TCGA-2G-AAH3 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAH4        TCGA-2G-AAH8        TCGA-2G-AAHA        TCGA-2G-AAHC 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAHG        TCGA-2G-AAHL        TCGA-2G-AAHP        TCGA-2G-AAHT 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAKG        TCGA-2G-AAKH        TCGA-2G-AAKL        TCGA-2G-AAKM 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAKO        TCGA-2G-AAL5        TCGA-2G-AAL7        TCGA-2G-AALF 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AALG        TCGA-2G-AALN        TCGA-2G-AALO        TCGA-2G-AALP 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AALQ        TCGA-2G-AALS        TCGA-2G-AALT        TCGA-2G-AALW 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AALX        TCGA-2G-AALZ        TCGA-2G-AAM2        TCGA-2G-AAM3 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-2G-AAM4        TCGA-2X-A9D5        TCGA-2X-A9D6        TCGA-4K-AA1G 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-4K-AA1H        TCGA-4K-AA1I        TCGA-S6-A8JW        TCGA-S6-A8JX 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-S6-A8JY        TCGA-SN-A6IS        TCGA-SN-A84X        TCGA-SO-A8JP 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-VF-A8A8        TCGA-VF-A8AA        TCGA-VF-A8AE        TCGA-W4-A7U2 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-W4-A7U4        TCGA-X3-A8G4        TCGA-XE-A8H1        TCGA-XE-A8H5 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-XE-A9SE        TCGA-XE-AANI        TCGA-XE-AANJ        TCGA-XE-AANR 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-XE-AANV        TCGA-XE-AAO3        TCGA-XE-AAO4        TCGA-XE-AAO6 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-XE-AAOB        TCGA-XE-AAOC        TCGA-XE-AAOD        TCGA-XE-AAOF 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-XE-AAOJ        TCGA-XE-AAOL        TCGA-XY-A89B        TCGA-XY-A9T9 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-YU-A90P        TCGA-YU-A90Q        TCGA-YU-A90W        TCGA-YU-A90Y 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-YU-A912        TCGA-YU-A94I        TCGA-YU-AA61        TCGA-ZM-AA0B 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
       TCGA-ZM-AA0D        TCGA-ZM-AA0E 
"ZC3H11A WILD-TYPE" "ZC3H11A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      0      1
  ZC3H11A WILD-TYPE     66     40     38
D43V5, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                66
  CLUS_2               0                40
  CLUS_3               1                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H11A MUTATED        2      0      0      0      0      0      1
  ZC3H11A WILD-TYPE     40     26     12     24      8     23     11
D43V6, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                40
  CLUS_2               0                26
  CLUS_3               0                12
  CLUS_4               0                24
  CLUS_5               0                 8
  CLUS_6               0                23
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      0      1
  ZC3H11A WILD-TYPE     49     56     39
D43V7, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                56
  CLUS_3               1                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      0      1
  ZC3H11A WILD-TYPE     66     38     40
D43V8, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                66
  CLUS_2               0                38
  CLUS_3               1                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      0      1
  ZC3H11A WILD-TYPE     65     36     43
D43V9, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                65
  CLUS_2               0                36
  CLUS_3               1                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        2      0      0      1
  ZC3H11A WILD-TYPE     34     32     38     40
D43V10, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2                34
  CLUS_2               0                32
  CLUS_3               0                38
  CLUS_4               1                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = RAC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        0      2      2
  RAC1 WILD-TYPE     47     40     56
D44V1, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            2             40
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      0
  RAC1 WILD-TYPE     51     47     45
D44V2, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1             47
  CLUS_3            0             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        2      0      0      1
  RAC1 WILD-TYPE     45     14     34     20
D44V3, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             14
  CLUS_3            0             34
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        2      0      1
  RAC1 WILD-TYPE     47     24     42
D44V4, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            0             24
  CLUS_3            1             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      0
  RAC1 WILD-TYPE     65     39     39
D44V5, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             65
  CLUS_2            1             39
  CLUS_3            0             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAC1 MUTATED        3      0      0      0      0      1      0
  RAC1 WILD-TYPE     39     26     12     24      8     22     12
D44V6, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             39
  CLUS_2            0             26
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      0
  RAC1 WILD-TYPE     48     55     40
D44V7, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             55
  CLUS_3            0             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      0
  RAC1 WILD-TYPE     65     37     41
D44V8, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             65
  CLUS_2            1             37
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      0
  RAC1 WILD-TYPE     64     35     44
D44V9, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             64
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        3      0      1      0
  RAC1 WILD-TYPE     33     32     37     41
D44V10, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             33
  CLUS_2            0             32
  CLUS_3            1             37
  CLUS_4            0             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = MTIF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        1      1      1
  MTIF3 WILD-TYPE     46     41     57
D45V1, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              41
  CLUS_3             1              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        1      0      2
  MTIF3 WILD-TYPE     53     48     43
D45V2, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              48
  CLUS_3             2              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF3 MUTATED        2      0      1      0
  MTIF3 WILD-TYPE     45     14     33     21
D45V3, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              14
  CLUS_3             1              33
  CLUS_4             0              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     47     24     42
D45V4, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             0              24
  CLUS_3             1              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     66     40     38
D45V5, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             0              40
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTIF3 MUTATED        1      1      0      1      0      0      0
  MTIF3 WILD-TYPE     41     25     12     23      8     23     12
D45V6, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     49     56     39
D45V7, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              56
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     66     38     40
D45V8, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             0              38
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     65     36     43
D45V9, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             0              36
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF3 MUTATED        1      1      0      1
  MTIF3 WILD-TYPE     35     31     38     40
D45V10, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              35
  CLUS_2             1              31
  CLUS_3             0              38
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = MFF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MFF MUTATED        1      1      1
  MFF WILD-TYPE     46     41     57
D46V1, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            41
  CLUS_3           1            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MFF MUTATED        2      1      0
  MFF WILD-TYPE     52     47     45
D46V2, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           2            52
  CLUS_2           1            47
  CLUS_3           0            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFF MUTATED        2      0      0      1
  MFF WILD-TYPE     45     14     34     20
D46V3, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           2            45
  CLUS_2           0            14
  CLUS_3           0            34
  CLUS_4           1            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MFF MUTATED        2      0      1
  MFF WILD-TYPE     47     24     42
D46V4, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           2            47
  CLUS_2           0            24
  CLUS_3           1            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MFF MUTATED        2      1      0
  MFF WILD-TYPE     66     39     39
D46V5, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           2            66
  CLUS_2           1            39
  CLUS_3           0            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MFF MUTATED        1      1      0      0      0      1      0
  MFF WILD-TYPE     41     25     12     24      8     22     12
D46V6, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           1            41
  CLUS_2           1            25
  CLUS_3           0            12
  CLUS_4           0            24
  CLUS_5           0             8
  CLUS_6           1            22
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MFF MUTATED        2      1      0
  MFF WILD-TYPE     49     55     40
D46V7, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            55
  CLUS_3           0            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MFF MUTATED        2      1      0
  MFF WILD-TYPE     66     37     41
D46V8, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           2            66
  CLUS_2           1            37
  CLUS_3           0            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MFF MUTATED        2      1      0
  MFF WILD-TYPE     65     35     44
D46V9, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           2            65
  CLUS_2           1            35
  CLUS_3           0            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFF MUTATED        1      1      1      0
  MFF WILD-TYPE     35     31     37     41
D46V10, multiclass
        clus
vv       MFF MUTATED MFF WILD-TYPE
  CLUS_1           1            35
  CLUS_2           1            31
  CLUS_3           1            37
  CLUS_4           0            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = PABPC3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        1      1      2
  PABPC3 WILD-TYPE     46     41     56
D47V1, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               41
  CLUS_3              2               56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        2      0      2
  PABPC3 WILD-TYPE     52     48     43
D47V2, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               48
  CLUS_3              2               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC3 MUTATED        1      0      1      0
  PABPC3 WILD-TYPE     46     14     33     21
D47V3, multiclass
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGY 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY       TCGA-SN-A6IS 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        1      1      0
  PABPC3 WILD-TYPE     48     23     43
D47V4, multiclass
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGY 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY       TCGA-SN-A6IS 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        2      0      2
  PABPC3 WILD-TYPE     66     40     37
D47V5, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               66
  CLUS_2              0               40
  CLUS_3              2               37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PABPC3 MUTATED        2      0      0      1      0      0      1
  PABPC3 WILD-TYPE     40     26     12     23      8     23     11
D47V6, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               40
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        2      0      2
  PABPC3 WILD-TYPE     49     56     38
D47V7, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               56
  CLUS_3              2               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        2      0      2
  PABPC3 WILD-TYPE     66     38     39
D47V8, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               66
  CLUS_2              0               38
  CLUS_3              2               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        2      0      2
  PABPC3 WILD-TYPE     65     36     42
D47V9, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              0               36
  CLUS_3              2               42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC3 MUTATED        2      0      0      2
  PABPC3 WILD-TYPE     34     32     38     39
D47V10, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               34
  CLUS_2              0               32
  CLUS_3              0               38
  CLUS_4              2               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = CUX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        1      1      3
  CUX1 WILD-TYPE     46     41     55
D48V1, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             41
  CLUS_3            3             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      1      2
  CUX1 WILD-TYPE     52     47     43
D48V2, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1             47
  CLUS_3            2             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        1      0      1      1
  CUX1 WILD-TYPE     46     14     33     20
D48V3, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             14
  CLUS_3            1             33
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        1      0      2
  CUX1 WILD-TYPE     48     24     41
D48V4, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            0             24
  CLUS_3            2             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      1      2
  CUX1 WILD-TYPE     66     39     37
D48V5, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             39
  CLUS_3            2             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUX1 MUTATED        1      1      0      1      0      1      1
  CUX1 WILD-TYPE     41     25     12     23      8     22     11
D48V6, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            1             23
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      1      2
  CUX1 WILD-TYPE     49     55     38
D48V7, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             55
  CLUS_3            2             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      1      2
  CUX1 WILD-TYPE     66     37     39
D48V8, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             37
  CLUS_3            2             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      1      2
  CUX1 WILD-TYPE     65     35     42
D48V9, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             35
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        2      0      1      2
  CUX1 WILD-TYPE     34     32     37     39
D48V10, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             34
  CLUS_2            0             32
  CLUS_3            1             37
  CLUS_4            2             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = PCMTD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        2      3      0
  PCMTD1 WILD-TYPE     45     39     58
D49V1, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              3               39
  CLUS_3              0               58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        3      1      1
  PCMTD1 WILD-TYPE     51     47     44
D49V2, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1               47
  CLUS_3              1               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCMTD1 MUTATED        3      0      0      1
  PCMTD1 WILD-TYPE     44     14     34     20
D49V3, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               14
  CLUS_3              0               34
  CLUS_4              1               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        3      0      1
  PCMTD1 WILD-TYPE     46     24     42
D49V4, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              3               46
  CLUS_2              0               24
  CLUS_3              1               42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        4      1      0
  PCMTD1 WILD-TYPE     64     39     39
D49V5, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              4               64
  CLUS_2              1               39
  CLUS_3              0               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCMTD1 MUTATED        1      3      0      0      0      1      0
  PCMTD1 WILD-TYPE     41     23     12     24      8     22     12
D49V6, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              1               41
  CLUS_2              3               23
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              1               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        3      2      0
  PCMTD1 WILD-TYPE     48     54     40
D49V7, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               54
  CLUS_3              0               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        4      1      0
  PCMTD1 WILD-TYPE     64     37     41
D49V8, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              4               64
  CLUS_2              1               37
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        4      1      0
  PCMTD1 WILD-TYPE     63     35     44
D49V9, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              4               63
  CLUS_2              1               35
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCMTD1 MUTATED        2      2      1      0
  PCMTD1 WILD-TYPE     34     30     37     41
D49V10, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              2               34
  CLUS_2              2               30
  CLUS_3              1               37
  CLUS_4              0               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = EZH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      1      1
  EZH2 WILD-TYPE     45     41     57
D50V1, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             41
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      2      0
  EZH2 WILD-TYPE     52     46     45
D50V2, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            2             46
  CLUS_3            0             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED        0      0      0      1
  EZH2 WILD-TYPE     47     14     34     20
D50V3, multiclass
[1] "Remove cluster labels:" "EZH2 MUTATED"          
clus
  EZH2 MUTATED EZH2 WILD-TYPE 
             1            115 
    TCGA-2G-AAEW     TCGA-2G-AAEX     TCGA-2G-AAF1     TCGA-2G-AAF4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAF6     TCGA-2G-AAF8     TCGA-2G-AAFG     TCGA-2G-AAFI 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAFJ     TCGA-2G-AAFL     TCGA-2G-AAFM     TCGA-2G-AAFY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAFZ     TCGA-2G-AAG0     TCGA-2G-AAG3     TCGA-2G-AAG5 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAG6     TCGA-2G-AAG7     TCGA-2G-AAG8     TCGA-2G-AAG9 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGC     TCGA-2G-AAGF     TCGA-2G-AAGG     TCGA-2G-AAGI 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGJ     TCGA-2G-AAGK     TCGA-2G-AAGM     TCGA-2G-AAGN 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGO     TCGA-2G-AAGP     TCGA-2G-AAGS     TCGA-2G-AAGT 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGV     TCGA-2G-AAGW     TCGA-2G-AAGX     TCGA-2G-AAGY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGZ     TCGA-2G-AAH0     TCGA-2G-AAH3     TCGA-2G-AAH4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAH8     TCGA-2G-AAHA     TCGA-2G-AAHC     TCGA-2G-AAHG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAHL     TCGA-2G-AAHP     TCGA-2G-AAHT     TCGA-2G-AAKG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAKH     TCGA-2G-AAKL     TCGA-2G-AAKM     TCGA-2G-AAKO 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAL5     TCGA-2G-AAL7     TCGA-2G-AALF     TCGA-2G-AALG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALN     TCGA-2G-AALO     TCGA-2G-AALP     TCGA-2G-AALQ 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALS     TCGA-2G-AALT     TCGA-2G-AALW     TCGA-2G-AALX 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALZ     TCGA-2G-AAM2     TCGA-2G-AAM3     TCGA-2G-AAM4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2X-A9D5     TCGA-2X-A9D6     TCGA-4K-AA1G     TCGA-4K-AA1H 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-4K-AA1I     TCGA-S6-A8JW     TCGA-S6-A8JX     TCGA-S6-A8JY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-SN-A6IS     TCGA-SN-A84X     TCGA-SO-A8JP     TCGA-VF-A8A8 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-VF-A8AA     TCGA-VF-A8AE     TCGA-W4-A7U2     TCGA-W4-A7U4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-X3-A8G4     TCGA-XE-A8H1     TCGA-XE-A8H5     TCGA-XE-A9SE 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AANI     TCGA-XE-AANJ     TCGA-XE-AANR     TCGA-XE-AANV 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAO3     TCGA-XE-AAO4     TCGA-XE-AAO6     TCGA-XE-AAOB 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAOC     TCGA-XE-AAOD     TCGA-XE-AAOF     TCGA-XE-AAOJ 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAOL     TCGA-XY-A89B     TCGA-XY-A9T9     TCGA-YU-A90P 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-YU-A90Q     TCGA-YU-A90S     TCGA-YU-A90W     TCGA-YU-A90Y 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-YU-A912     TCGA-YU-A94I     TCGA-YU-AA61     TCGA-ZM-AA05 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-ZM-AA0B     TCGA-ZM-AA0D     TCGA-ZM-AA0E 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        0      0      1
  EZH2 WILD-TYPE     49     24     42
D50V4, multiclass
[1] "Remove cluster labels:" "EZH2 MUTATED"          
clus
  EZH2 MUTATED EZH2 WILD-TYPE 
             1            115 
    TCGA-2G-AAEW     TCGA-2G-AAEX     TCGA-2G-AAF1     TCGA-2G-AAF4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAF6     TCGA-2G-AAF8     TCGA-2G-AAFG     TCGA-2G-AAFI 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAFJ     TCGA-2G-AAFL     TCGA-2G-AAFM     TCGA-2G-AAFY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAFZ     TCGA-2G-AAG0     TCGA-2G-AAG3     TCGA-2G-AAG5 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAG6     TCGA-2G-AAG7     TCGA-2G-AAG8     TCGA-2G-AAG9 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGC     TCGA-2G-AAGF     TCGA-2G-AAGG     TCGA-2G-AAGI 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGJ     TCGA-2G-AAGK     TCGA-2G-AAGM     TCGA-2G-AAGN 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGO     TCGA-2G-AAGP     TCGA-2G-AAGS     TCGA-2G-AAGT 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGV     TCGA-2G-AAGW     TCGA-2G-AAGX     TCGA-2G-AAGY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGZ     TCGA-2G-AAH0     TCGA-2G-AAH3     TCGA-2G-AAH4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAH8     TCGA-2G-AAHA     TCGA-2G-AAHC     TCGA-2G-AAHG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAHL     TCGA-2G-AAHP     TCGA-2G-AAHT     TCGA-2G-AAKG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAKH     TCGA-2G-AAKL     TCGA-2G-AAKM     TCGA-2G-AAKO 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAL5     TCGA-2G-AAL7     TCGA-2G-AALF     TCGA-2G-AALG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALN     TCGA-2G-AALO     TCGA-2G-AALP     TCGA-2G-AALQ 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALS     TCGA-2G-AALT     TCGA-2G-AALW     TCGA-2G-AALX 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALZ     TCGA-2G-AAM2     TCGA-2G-AAM3     TCGA-2G-AAM4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2X-A9D5     TCGA-2X-A9D6     TCGA-4K-AA1G     TCGA-4K-AA1H 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-4K-AA1I     TCGA-S6-A8JW     TCGA-S6-A8JX     TCGA-S6-A8JY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-SN-A6IS     TCGA-SN-A84X     TCGA-SO-A8JP     TCGA-VF-A8A8 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-VF-A8AA     TCGA-VF-A8AE     TCGA-W4-A7U2     TCGA-W4-A7U4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-X3-A8G4     TCGA-XE-A8H1     TCGA-XE-A8H5     TCGA-XE-A9SE 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AANI     TCGA-XE-AANJ     TCGA-XE-AANR     TCGA-XE-AANV 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAO3     TCGA-XE-AAO4     TCGA-XE-AAO6     TCGA-XE-AAOB 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAOC     TCGA-XE-AAOD     TCGA-XE-AAOF     TCGA-XE-AAOJ 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAOL     TCGA-XY-A89B     TCGA-XY-A9T9     TCGA-YU-A90P 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-YU-A90Q     TCGA-YU-A90S     TCGA-YU-A90W     TCGA-YU-A90Y 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-YU-A912     TCGA-YU-A94I     TCGA-YU-AA61     TCGA-ZM-AA05 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-ZM-AA0B     TCGA-ZM-AA0D     TCGA-ZM-AA0E 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      2      0
  EZH2 WILD-TYPE     66     38     39
D50V5, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            2             38
  CLUS_3            0             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EZH2 MUTATED        2      0      0      0      0      2      0
  EZH2 WILD-TYPE     40     26     12     24      8     21     12
D50V6, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             40
  CLUS_2            0             26
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            2             21
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      2      0
  EZH2 WILD-TYPE     49     54     40
D50V7, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             54
  CLUS_3            0             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      2      0
  EZH2 WILD-TYPE     66     36     41
D50V8, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            2             36
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      2      0
  EZH2 WILD-TYPE     65     34     44
D50V9, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2             34
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED        2      0      2      0
  EZH2 WILD-TYPE     34     32     36     41
D50V10, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             34
  CLUS_2            0             32
  CLUS_3            2             36
  CLUS_4            0             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = HTT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        1      1      1
  HTT WILD-TYPE     46     41     57
D51V1, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            41
  CLUS_3           1            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        2      1      0
  HTT WILD-TYPE     52     47     45
D51V2, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           2            52
  CLUS_2           1            47
  CLUS_3           0            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTT MUTATED        1      1      0      0
  HTT WILD-TYPE     46     13     34     21
D51V3, multiclass
[1] "Remove cluster labels:" "HTT MUTATED"           
clus
  HTT MUTATED HTT WILD-TYPE 
            2           114 
   TCGA-2G-AAEW    TCGA-2G-AAEX    TCGA-2G-AAF1    TCGA-2G-AAF4    TCGA-2G-AAF6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAF8    TCGA-2G-AAFG    TCGA-2G-AAFJ    TCGA-2G-AAFL    TCGA-2G-AAFM 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAFN    TCGA-2G-AAFY    TCGA-2G-AAFZ    TCGA-2G-AAG0    TCGA-2G-AAG3 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAG5    TCGA-2G-AAG6    TCGA-2G-AAG7    TCGA-2G-AAG8    TCGA-2G-AAG9 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGC    TCGA-2G-AAGF    TCGA-2G-AAGG    TCGA-2G-AAGI    TCGA-2G-AAGJ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGK    TCGA-2G-AAGM    TCGA-2G-AAGN    TCGA-2G-AAGO    TCGA-2G-AAGP 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGS    TCGA-2G-AAGT    TCGA-2G-AAGV    TCGA-2G-AAGW    TCGA-2G-AAGX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGY    TCGA-2G-AAGZ    TCGA-2G-AAH0    TCGA-2G-AAH3    TCGA-2G-AAH4 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAH8    TCGA-2G-AAHA    TCGA-2G-AAHC    TCGA-2G-AAHG    TCGA-2G-AAHL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAHP    TCGA-2G-AAHT    TCGA-2G-AAKG    TCGA-2G-AAKH    TCGA-2G-AAKL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAKM    TCGA-2G-AAKO    TCGA-2G-AAL5    TCGA-2G-AAL7    TCGA-2G-AALF 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AALG    TCGA-2G-AALN    TCGA-2G-AALO    TCGA-2G-AALP    TCGA-2G-AALQ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AALS    TCGA-2G-AALT    TCGA-2G-AALW    TCGA-2G-AALX    TCGA-2G-AALZ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAM2    TCGA-2G-AAM3    TCGA-2G-AAM4    TCGA-2X-A9D5    TCGA-2X-A9D6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-4K-AA1G    TCGA-4K-AA1H    TCGA-4K-AA1I    TCGA-S6-A8JW    TCGA-S6-A8JX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S6-A8JY    TCGA-SN-A84X    TCGA-SO-A8JP    TCGA-VF-A8A8    TCGA-VF-A8AA 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-VF-A8AE    TCGA-W4-A7U2    TCGA-W4-A7U4    TCGA-X3-A8G4    TCGA-XE-A8H1 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-A8H5    TCGA-XE-A9SE    TCGA-XE-AANI    TCGA-XE-AANJ    TCGA-XE-AANR 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-AANV    TCGA-XE-AAO3    TCGA-XE-AAO4    TCGA-XE-AAO6    TCGA-XE-AAOB 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-AAOC    TCGA-XE-AAOD    TCGA-XE-AAOF    TCGA-XE-AAOJ    TCGA-XE-AAOL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XY-A89B    TCGA-XY-A9T9    TCGA-YU-A90P    TCGA-YU-A90Q    TCGA-YU-A90S 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-YU-A90W    TCGA-YU-A90Y    TCGA-YU-A912    TCGA-YU-A94I    TCGA-YU-AA61 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-ZM-AA05    TCGA-ZM-AA0B    TCGA-ZM-AA0D    TCGA-ZM-AA0E 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        1      1      0
  HTT WILD-TYPE     48     23     43
D51V4, multiclass
[1] "Remove cluster labels:" "HTT MUTATED"           
clus
  HTT MUTATED HTT WILD-TYPE 
            2           114 
   TCGA-2G-AAEW    TCGA-2G-AAEX    TCGA-2G-AAF1    TCGA-2G-AAF4    TCGA-2G-AAF6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAF8    TCGA-2G-AAFG    TCGA-2G-AAFJ    TCGA-2G-AAFL    TCGA-2G-AAFM 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAFN    TCGA-2G-AAFY    TCGA-2G-AAFZ    TCGA-2G-AAG0    TCGA-2G-AAG3 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAG5    TCGA-2G-AAG6    TCGA-2G-AAG7    TCGA-2G-AAG8    TCGA-2G-AAG9 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGC    TCGA-2G-AAGF    TCGA-2G-AAGG    TCGA-2G-AAGI    TCGA-2G-AAGJ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGK    TCGA-2G-AAGM    TCGA-2G-AAGN    TCGA-2G-AAGO    TCGA-2G-AAGP 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGS    TCGA-2G-AAGT    TCGA-2G-AAGV    TCGA-2G-AAGW    TCGA-2G-AAGX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGY    TCGA-2G-AAGZ    TCGA-2G-AAH0    TCGA-2G-AAH3    TCGA-2G-AAH4 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAH8    TCGA-2G-AAHA    TCGA-2G-AAHC    TCGA-2G-AAHG    TCGA-2G-AAHL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAHP    TCGA-2G-AAHT    TCGA-2G-AAKG    TCGA-2G-AAKH    TCGA-2G-AAKL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAKM    TCGA-2G-AAKO    TCGA-2G-AAL5    TCGA-2G-AAL7    TCGA-2G-AALF 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AALG    TCGA-2G-AALN    TCGA-2G-AALO    TCGA-2G-AALP    TCGA-2G-AALQ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AALS    TCGA-2G-AALT    TCGA-2G-AALW    TCGA-2G-AALX    TCGA-2G-AALZ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAM2    TCGA-2G-AAM3    TCGA-2G-AAM4    TCGA-2X-A9D5    TCGA-2X-A9D6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-4K-AA1G    TCGA-4K-AA1H    TCGA-4K-AA1I    TCGA-S6-A8JW    TCGA-S6-A8JX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S6-A8JY    TCGA-SN-A84X    TCGA-SO-A8JP    TCGA-VF-A8A8    TCGA-VF-A8AA 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-VF-A8AE    TCGA-W4-A7U2    TCGA-W4-A7U4    TCGA-X3-A8G4    TCGA-XE-A8H1 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-A8H5    TCGA-XE-A9SE    TCGA-XE-AANI    TCGA-XE-AANJ    TCGA-XE-AANR 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-AANV    TCGA-XE-AAO3    TCGA-XE-AAO4    TCGA-XE-AAO6    TCGA-XE-AAOB 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-AAOC    TCGA-XE-AAOD    TCGA-XE-AAOF    TCGA-XE-AAOJ    TCGA-XE-AAOL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XY-A89B    TCGA-XY-A9T9    TCGA-YU-A90P    TCGA-YU-A90Q    TCGA-YU-A90S 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-YU-A90W    TCGA-YU-A90Y    TCGA-YU-A912    TCGA-YU-A94I    TCGA-YU-AA61 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-ZM-AA05    TCGA-ZM-AA0B    TCGA-ZM-AA0D    TCGA-ZM-AA0E 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        2      1      0
  HTT WILD-TYPE     66     39     39
D51V5, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           2            66
  CLUS_2           1            39
  CLUS_3           0            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTT MUTATED        1      1      1      0      0      0      0
  HTT WILD-TYPE     41     25     11     24      8     23     12
D51V6, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           1            41
  CLUS_2           1            25
  CLUS_3           1            11
  CLUS_4           0            24
  CLUS_5           0             8
  CLUS_6           0            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        2      1      0
  HTT WILD-TYPE     49     55     40
D51V7, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            55
  CLUS_3           0            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        2      1      0
  HTT WILD-TYPE     66     37     41
D51V8, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           2            66
  CLUS_2           1            37
  CLUS_3           0            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        2      1      0
  HTT WILD-TYPE     65     35     44
D51V9, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           2            65
  CLUS_2           1            35
  CLUS_3           0            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTT MUTATED        1      1      1      0
  HTT WILD-TYPE     35     31     37     41
D51V10, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           1            35
  CLUS_2           1            31
  CLUS_3           1            37
  CLUS_4           0            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = GSX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        0      1      3
  GSX2 WILD-TYPE     47     41     55
D52V1, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            1             41
  CLUS_3            3             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        0      2      2
  GSX2 WILD-TYPE     54     46     43
D52V2, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            2             46
  CLUS_3            2             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSX2 MUTATED        1      0      3      0
  GSX2 WILD-TYPE     46     14     31     21
D52V3, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             14
  CLUS_3            3             31
  CLUS_4            0             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      3      0
  GSX2 WILD-TYPE     48     21     43
D52V4, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            3             21
  CLUS_3            0             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      1      2
  GSX2 WILD-TYPE     67     39     37
D52V5, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             67
  CLUS_2            1             39
  CLUS_3            2             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSX2 MUTATED        0      1      1      2      0      0      0
  GSX2 WILD-TYPE     42     25     11     22      8     23     12
D52V6, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             42
  CLUS_2            1             25
  CLUS_3            1             11
  CLUS_4            2             22
  CLUS_5            0              8
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      0      3
  GSX2 WILD-TYPE     50     56     37
D52V7, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            0             56
  CLUS_3            3             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      0      3
  GSX2 WILD-TYPE     67     38     38
D52V8, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             67
  CLUS_2            0             38
  CLUS_3            3             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      1      2
  GSX2 WILD-TYPE     66     35     42
D52V9, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            1             35
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSX2 MUTATED        0      1      1      2
  GSX2 WILD-TYPE     36     31     37     39
D52V10, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             36
  CLUS_2            1             31
  CLUS_3            1             37
  CLUS_4            2             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = AHDC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        2      0      2
  AHDC1 WILD-TYPE     45     42     56
D53V1, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              42
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      0      4
  AHDC1 WILD-TYPE     54     48     41
D53V2, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             0              48
  CLUS_3             4              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHDC1 MUTATED        0      1      3      0
  AHDC1 WILD-TYPE     47     13     31     21
D53V3, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              13
  CLUS_3             3              31
  CLUS_4             0              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      2      2
  AHDC1 WILD-TYPE     49     22     41
D53V4, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             2              22
  CLUS_3             2              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      0      4
  AHDC1 WILD-TYPE     68     40     35
D53V5, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             0              40
  CLUS_3             4              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AHDC1 MUTATED        0      0      0      2      0      0      2
  AHDC1 WILD-TYPE     42     26     12     22      8     23     10
D53V6, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             2              22
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      0      4
  AHDC1 WILD-TYPE     51     56     36
D53V7, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             0              56
  CLUS_3             4              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      0      4
  AHDC1 WILD-TYPE     68     38     37
D53V8, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             0              38
  CLUS_3             4              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      0      4
  AHDC1 WILD-TYPE     67     36     40
D53V9, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             0              36
  CLUS_3             4              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHDC1 MUTATED        0      0      0      4
  AHDC1 WILD-TYPE     36     32     38     37
D53V10, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              36
  CLUS_2             0              32
  CLUS_3             0              38
  CLUS_4             4              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = RFC3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFC3 MUTATED        1      1      1
  RFC3 WILD-TYPE     46     41     57
D54V1, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             41
  CLUS_3            1             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFC3 MUTATED        1      2      0
  RFC3 WILD-TYPE     53     46     45
D54V2, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            2             46
  CLUS_3            0             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFC3 MUTATED        1      1      1      0
  RFC3 WILD-TYPE     46     13     33     21
D54V3, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             13
  CLUS_3            1             33
  CLUS_4            0             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFC3 MUTATED        1      0      2
  RFC3 WILD-TYPE     48     24     41
D54V4, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            0             24
  CLUS_3            2             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFC3 MUTATED        1      2      0
  RFC3 WILD-TYPE     67     38     39
D54V5, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            1             67
  CLUS_2            2             38
  CLUS_3            0             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RFC3 MUTATED        0      1      1      0      0      1      0
  RFC3 WILD-TYPE     42     25     11     24      8     22     12
D54V6, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            0             42
  CLUS_2            1             25
  CLUS_3            1             11
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFC3 MUTATED        1      2      0
  RFC3 WILD-TYPE     50     54     40
D54V7, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             54
  CLUS_3            0             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFC3 MUTATED        1      2      0
  RFC3 WILD-TYPE     67     36     41
D54V8, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            1             67
  CLUS_2            2             36
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFC3 MUTATED        1      1      1
  RFC3 WILD-TYPE     66     35     43
D54V9, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            1             35
  CLUS_3            1             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFC3 MUTATED        0      1      2      0
  RFC3 WILD-TYPE     36     31     36     41
D54V10, multiclass
        clus
vv       RFC3 MUTATED RFC3 WILD-TYPE
  CLUS_1            0             36
  CLUS_2            1             31
  CLUS_3            2             36
  CLUS_4            0             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = CHD4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD4 MUTATED        1      1      2
  CHD4 WILD-TYPE     46     41     56
D55V1, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             41
  CLUS_3            2             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD4 MUTATED        1      1      2
  CHD4 WILD-TYPE     53     47     43
D55V2, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1             47
  CLUS_3            2             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD4 MUTATED        2      0      1      1
  CHD4 WILD-TYPE     45     14     33     20
D55V3, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             14
  CLUS_3            1             33
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD4 MUTATED        2      0      2
  CHD4 WILD-TYPE     47     24     41
D55V4, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            0             24
  CLUS_3            2             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD4 MUTATED        2      1      1
  CHD4 WILD-TYPE     66     39     38
D55V5, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             39
  CLUS_3            1             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHD4 MUTATED        1      1      1      0      0      0      1
  CHD4 WILD-TYPE     41     25     11     24      8     23     11
D55V6, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            1             25
  CLUS_3            1             11
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            0             23
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD4 MUTATED        1      2      1
  CHD4 WILD-TYPE     50     54     39
D55V7, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             54
  CLUS_3            1             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD4 MUTATED        2      1      1
  CHD4 WILD-TYPE     66     37     40
D55V8, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             37
  CLUS_3            1             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD4 MUTATED        2      0      2
  CHD4 WILD-TYPE     65     36     42
D55V9, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            0             36
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD4 MUTATED        1      1      1      1
  CHD4 WILD-TYPE     35     31     37     40
D55V10, multiclass
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  CLUS_1            1             35
  CLUS_2            1             31
  CLUS_3            1             37
  CLUS_4            1             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = RUNX2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        1      1      2
  RUNX2 WILD-TYPE     46     41     56
D56V1, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              41
  CLUS_3             2              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        1      1      2
  RUNX2 WILD-TYPE     53     47     43
D56V2, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1              47
  CLUS_3             2              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        1      0      1      1
  RUNX2 WILD-TYPE     46     14     33     20
D56V3, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              14
  CLUS_3             1              33
  CLUS_4             1              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        1      0      2
  RUNX2 WILD-TYPE     48     24     41
D56V4, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             0              24
  CLUS_3             2              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      1      1
  RUNX2 WILD-TYPE     66     39     38
D56V5, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              39
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUNX2 MUTATED        1      1      0      1      0      1      0
  RUNX2 WILD-TYPE     41     25     12     23      8     22     12
D56V6, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      1      1
  RUNX2 WILD-TYPE     49     55     39
D56V7, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              55
  CLUS_3             1              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      1      1
  RUNX2 WILD-TYPE     66     37     40
D56V8, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              37
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      1      1
  RUNX2 WILD-TYPE     65     35     43
D56V9, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        0      2      1      1
  RUNX2 WILD-TYPE     36     30     37     40
D56V10, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             0              36
  CLUS_2             2              30
  CLUS_3             1              37
  CLUS_4             1              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = SP4 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      1      3
  SP4 WILD-TYPE     47     41     55
D57V1, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            47
  CLUS_2           1            41
  CLUS_3           3            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      4      0
  SP4 WILD-TYPE     54     44     45
D57V2, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            54
  CLUS_2           4            44
  CLUS_3           0            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        0      0      2      0
  SP4 WILD-TYPE     47     14     32     21
D57V3, multiclass
[1] "Remove cluster labels:" "SP4 MUTATED"           
clus
  SP4 MUTATED SP4 WILD-TYPE 
            2           114 
   TCGA-2G-AAEW    TCGA-2G-AAEX    TCGA-2G-AAF1    TCGA-2G-AAF4    TCGA-2G-AAF6 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAF8    TCGA-2G-AAFG    TCGA-2G-AAFI    TCGA-2G-AAFJ    TCGA-2G-AAFL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAFM    TCGA-2G-AAFN    TCGA-2G-AAFY    TCGA-2G-AAFZ    TCGA-2G-AAG0 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAG3    TCGA-2G-AAG5    TCGA-2G-AAG6    TCGA-2G-AAG7    TCGA-2G-AAG8 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAG9    TCGA-2G-AAGC    TCGA-2G-AAGF    TCGA-2G-AAGG    TCGA-2G-AAGI 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGJ    TCGA-2G-AAGK    TCGA-2G-AAGM    TCGA-2G-AAGN    TCGA-2G-AAGO 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGP    TCGA-2G-AAGS    TCGA-2G-AAGT    TCGA-2G-AAGV    TCGA-2G-AAGW 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGX    TCGA-2G-AAGY    TCGA-2G-AAGZ    TCGA-2G-AAH0    TCGA-2G-AAH3 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAH4    TCGA-2G-AAH8    TCGA-2G-AAHA    TCGA-2G-AAHC    TCGA-2G-AAHG 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAHL    TCGA-2G-AAHP    TCGA-2G-AAHT    TCGA-2G-AAKH    TCGA-2G-AAKL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAKM    TCGA-2G-AAKO    TCGA-2G-AAL5    TCGA-2G-AAL7    TCGA-2G-AALF 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AALG    TCGA-2G-AALN    TCGA-2G-AALP    TCGA-2G-AALQ    TCGA-2G-AALS 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AALT    TCGA-2G-AALW    TCGA-2G-AALX    TCGA-2G-AALZ    TCGA-2G-AAM2 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAM3    TCGA-2G-AAM4    TCGA-2X-A9D5    TCGA-2X-A9D6    TCGA-4K-AA1G 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-4K-AA1H    TCGA-4K-AA1I    TCGA-S6-A8JW    TCGA-S6-A8JX    TCGA-S6-A8JY 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-SN-A6IS    TCGA-SN-A84X    TCGA-SO-A8JP    TCGA-VF-A8A8    TCGA-VF-A8AA 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-VF-A8AE    TCGA-W4-A7U2    TCGA-W4-A7U4    TCGA-X3-A8G4    TCGA-XE-A8H1 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-A8H5    TCGA-XE-A9SE    TCGA-XE-AANI    TCGA-XE-AANJ    TCGA-XE-AANR 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-AANV    TCGA-XE-AAO3    TCGA-XE-AAO4    TCGA-XE-AAO6    TCGA-XE-AAOB 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-AAOC    TCGA-XE-AAOD    TCGA-XE-AAOF    TCGA-XE-AAOJ    TCGA-XE-AAOL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XY-A89B    TCGA-XY-A9T9    TCGA-YU-A90P    TCGA-YU-A90Q    TCGA-YU-A90S 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-YU-A90W    TCGA-YU-A90Y    TCGA-YU-A912    TCGA-YU-A94I    TCGA-YU-AA61 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-ZM-AA05    TCGA-ZM-AA0B    TCGA-ZM-AA0D    TCGA-ZM-AA0E 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      1      1
  SP4 WILD-TYPE     49     23     42
D57V4, multiclass
[1] "Remove cluster labels:" "SP4 MUTATED"           
clus
  SP4 MUTATED SP4 WILD-TYPE 
            2           114 
   TCGA-2G-AAEW    TCGA-2G-AAEX    TCGA-2G-AAF1    TCGA-2G-AAF4    TCGA-2G-AAF6 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAF8    TCGA-2G-AAFG    TCGA-2G-AAFI    TCGA-2G-AAFJ    TCGA-2G-AAFL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAFM    TCGA-2G-AAFN    TCGA-2G-AAFY    TCGA-2G-AAFZ    TCGA-2G-AAG0 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAG3    TCGA-2G-AAG5    TCGA-2G-AAG6    TCGA-2G-AAG7    TCGA-2G-AAG8 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAG9    TCGA-2G-AAGC    TCGA-2G-AAGF    TCGA-2G-AAGG    TCGA-2G-AAGI 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGJ    TCGA-2G-AAGK    TCGA-2G-AAGM    TCGA-2G-AAGN    TCGA-2G-AAGO 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGP    TCGA-2G-AAGS    TCGA-2G-AAGT    TCGA-2G-AAGV    TCGA-2G-AAGW 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGX    TCGA-2G-AAGY    TCGA-2G-AAGZ    TCGA-2G-AAH0    TCGA-2G-AAH3 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAH4    TCGA-2G-AAH8    TCGA-2G-AAHA    TCGA-2G-AAHC    TCGA-2G-AAHG 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAHL    TCGA-2G-AAHP    TCGA-2G-AAHT    TCGA-2G-AAKH    TCGA-2G-AAKL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAKM    TCGA-2G-AAKO    TCGA-2G-AAL5    TCGA-2G-AAL7    TCGA-2G-AALF 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AALG    TCGA-2G-AALN    TCGA-2G-AALP    TCGA-2G-AALQ    TCGA-2G-AALS 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AALT    TCGA-2G-AALW    TCGA-2G-AALX    TCGA-2G-AALZ    TCGA-2G-AAM2 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAM3    TCGA-2G-AAM4    TCGA-2X-A9D5    TCGA-2X-A9D6    TCGA-4K-AA1G 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-4K-AA1H    TCGA-4K-AA1I    TCGA-S6-A8JW    TCGA-S6-A8JX    TCGA-S6-A8JY 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-SN-A6IS    TCGA-SN-A84X    TCGA-SO-A8JP    TCGA-VF-A8A8    TCGA-VF-A8AA 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-VF-A8AE    TCGA-W4-A7U2    TCGA-W4-A7U4    TCGA-X3-A8G4    TCGA-XE-A8H1 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-A8H5    TCGA-XE-A9SE    TCGA-XE-AANI    TCGA-XE-AANJ    TCGA-XE-AANR 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-AANV    TCGA-XE-AAO3    TCGA-XE-AAO4    TCGA-XE-AAO6    TCGA-XE-AAOB 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-AAOC    TCGA-XE-AAOD    TCGA-XE-AAOF    TCGA-XE-AAOJ    TCGA-XE-AAOL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XY-A89B    TCGA-XY-A9T9    TCGA-YU-A90P    TCGA-YU-A90Q    TCGA-YU-A90S 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-YU-A90W    TCGA-YU-A90Y    TCGA-YU-A912    TCGA-YU-A94I    TCGA-YU-AA61 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-ZM-AA05    TCGA-ZM-AA0B    TCGA-ZM-AA0D    TCGA-ZM-AA0E 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      3      1
  SP4 WILD-TYPE     68     37     38
D57V5, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            68
  CLUS_2           3            37
  CLUS_3           1            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP4 MUTATED        0      0      1      1      1      1      0
  SP4 WILD-TYPE     42     26     11     23      7     22     12
D57V6, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            42
  CLUS_2           0            26
  CLUS_3           1            11
  CLUS_4           1            23
  CLUS_5           1             7
  CLUS_6           1            22
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      3      1
  SP4 WILD-TYPE     51     53     39
D57V7, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            51
  CLUS_2           3            53
  CLUS_3           1            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      3      1
  SP4 WILD-TYPE     68     35     40
D57V8, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            68
  CLUS_2           3            35
  CLUS_3           1            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      3      1
  SP4 WILD-TYPE     67     33     43
D57V9, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            67
  CLUS_2           3            33
  CLUS_3           1            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        0      0      3      1
  SP4 WILD-TYPE     36     32     35     40
D57V10, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            36
  CLUS_2           0            32
  CLUS_3           3            35
  CLUS_4           1            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DIAPH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        1      1      1
  DIAPH1 WILD-TYPE     46     41     57
D58V1, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               41
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        2      0      1
  DIAPH1 WILD-TYPE     52     48     44
D58V2, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               48
  CLUS_3              1               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH1 MUTATED        1      0      1      0
  DIAPH1 WILD-TYPE     46     14     33     21
D58V3, multiclass
[1] "Remove cluster labels:" "DIAPH1 MUTATED"        
clus
  DIAPH1 MUTATED DIAPH1 WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAGY       TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAH4       TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAHG       TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAKG       TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAKO       TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AALG       TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AALQ       TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AALX       TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAM4       TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-4K-AA1H       TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-S6-A8JY       TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-VF-A8A8       TCGA-VF-A8AA       TCGA-VF-A8AE       TCGA-W4-A7U2 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-W4-A7U4       TCGA-X3-A8G4       TCGA-XE-A8H1       TCGA-XE-A8H5 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-XE-A9SE       TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-XE-AAO3       TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-XE-AAOC       TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-XE-AAOL       TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-YU-A90Q       TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-YU-A912       TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-ZM-AA0B       TCGA-ZM-AA0D 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        1      0      1
  DIAPH1 WILD-TYPE     48     24     42
D58V4, multiclass
[1] "Remove cluster labels:" "DIAPH1 MUTATED"        
clus
  DIAPH1 MUTATED DIAPH1 WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAGY       TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAH4       TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAHG       TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAKG       TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAKO       TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AALG       TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AALQ       TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AALX       TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-2G-AAM4       TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-4K-AA1H       TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-S6-A8JY       TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-VF-A8A8       TCGA-VF-A8AA       TCGA-VF-A8AE       TCGA-W4-A7U2 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-W4-A7U4       TCGA-X3-A8G4       TCGA-XE-A8H1       TCGA-XE-A8H5 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-XE-A9SE       TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-XE-AAO3       TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-XE-AAOC       TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-XE-AAOL       TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-YU-A90Q       TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-YU-A912       TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
      TCGA-ZM-AA0B       TCGA-ZM-AA0D 
"DIAPH1 WILD-TYPE" "DIAPH1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        2      0      1
  DIAPH1 WILD-TYPE     66     40     38
D58V5, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2               66
  CLUS_2              0               40
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DIAPH1 MUTATED        2      0      0      1      0      0      0
  DIAPH1 WILD-TYPE     40     26     12     23      8     23     12
D58V6, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2               40
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        1      1      1
  DIAPH1 WILD-TYPE     50     55     39
D58V7, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               55
  CLUS_3              1               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        2      0      1
  DIAPH1 WILD-TYPE     66     38     40
D58V8, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2               66
  CLUS_2              0               38
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH1 MUTATED        2      0      1
  DIAPH1 WILD-TYPE     65     36     43
D58V9, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              0               36
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH1 MUTATED        1      1      0      1
  DIAPH1 WILD-TYPE     35     31     38     40
D58V10, multiclass
        clus
vv       DIAPH1 MUTATED DIAPH1 WILD-TYPE
  CLUS_1              1               35
  CLUS_2              1               31
  CLUS_3              0               38
  CLUS_4              1               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = PLEC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        6      0      4
  PLEC WILD-TYPE     41     42     54
D59V1, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            6             41
  CLUS_2            0             42
  CLUS_3            4             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        5      1      4
  PLEC WILD-TYPE     49     47     41
D59V2, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            5             49
  CLUS_2            1             47
  CLUS_3            4             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEC MUTATED        2      2      4      1
  PLEC WILD-TYPE     45     12     30     20
D59V3, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            2             45
  CLUS_2            2             12
  CLUS_3            4             30
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        2      4      3
  PLEC WILD-TYPE     47     20     40
D59V4, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            2             47
  CLUS_2            4             20
  CLUS_3            3             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        4      2      4
  PLEC WILD-TYPE     64     38     35
D59V5, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            4             64
  CLUS_2            2             38
  CLUS_3            4             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLEC MUTATED        4      0      1      2      1      0      2
  PLEC WILD-TYPE     38     26     11     22      7     23     10
D59V6, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            4             38
  CLUS_2            0             26
  CLUS_3            1             11
  CLUS_4            2             22
  CLUS_5            1              7
  CLUS_6            0             23
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        4      2      4
  PLEC WILD-TYPE     47     54     36
D59V7, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             54
  CLUS_3            4             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        4      2      4
  PLEC WILD-TYPE     64     36     37
D59V8, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            4             64
  CLUS_2            2             36
  CLUS_3            4             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        4      1      5
  PLEC WILD-TYPE     63     35     39
D59V9, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            4             63
  CLUS_2            1             35
  CLUS_3            5             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEC MUTATED        4      0      1      5
  PLEC WILD-TYPE     32     32     37     36
D59V10, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            4             32
  CLUS_2            0             32
  CLUS_3            1             37
  CLUS_4            5             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = NHS MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NHS MUTATED        1      0      2
  NHS WILD-TYPE     46     42     56
D60V1, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           1            46
  CLUS_2           0            42
  CLUS_3           2            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NHS MUTATED        2      1      0
  NHS WILD-TYPE     52     47     45
D60V2, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           2            52
  CLUS_2           1            47
  CLUS_3           0            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHS MUTATED        1      1      0      1
  NHS WILD-TYPE     46     13     34     20
D60V3, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            13
  CLUS_3           0            34
  CLUS_4           1            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NHS MUTATED        2      0      1
  NHS WILD-TYPE     47     24     42
D60V4, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           2            47
  CLUS_2           0            24
  CLUS_3           1            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NHS MUTATED        2      1      0
  NHS WILD-TYPE     66     39     39
D60V5, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           2            66
  CLUS_2           1            39
  CLUS_3           0            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NHS MUTATED        2      0      0      0      0      1      0
  NHS WILD-TYPE     40     26     12     24      8     22     12
D60V6, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           2            40
  CLUS_2           0            26
  CLUS_3           0            12
  CLUS_4           0            24
  CLUS_5           0             8
  CLUS_6           1            22
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NHS MUTATED        2      1      0
  NHS WILD-TYPE     49     55     40
D60V7, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            55
  CLUS_3           0            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NHS MUTATED        2      1      0
  NHS WILD-TYPE     66     37     41
D60V8, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           2            66
  CLUS_2           1            37
  CLUS_3           0            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NHS MUTATED        2      1      0
  NHS WILD-TYPE     65     35     44
D60V9, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           2            65
  CLUS_2           1            35
  CLUS_3           0            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHS MUTATED        1      1      1      0
  NHS WILD-TYPE     35     31     37     41
D60V10, multiclass
        clus
vv       NHS MUTATED NHS WILD-TYPE
  CLUS_1           1            35
  CLUS_2           1            31
  CLUS_3           1            37
  CLUS_4           0            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = PIK3CD MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     44     42     57
D61V1, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               42
  CLUS_3              1               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     51     48     44
D61V2, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               48
  CLUS_3              1               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CD MUTATED        2      0      0      0
  PIK3CD WILD-TYPE     45     14     34     21
D61V3, multiclass
[1] "Remove cluster labels:" "PIK3CD MUTATED"        
clus
  PIK3CD MUTATED PIK3CD WILD-TYPE 
               2              114 
      TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4       TCGA-2G-AAF6 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI       TCGA-2G-AAFJ 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN       TCGA-2G-AAFY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3       TCGA-2G-AAG5 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8       TCGA-2G-AAG9 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG       TCGA-2G-AAGI 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM       TCGA-2G-AAGN 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS       TCGA-2G-AAGT 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        2      0      0
  PIK3CD WILD-TYPE     47     24     43
D61V4, multiclass
[1] "Remove cluster labels:" "PIK3CD MUTATED"        
clus
  PIK3CD MUTATED PIK3CD WILD-TYPE 
               2              114 
      TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4       TCGA-2G-AAF6 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI       TCGA-2G-AAFJ 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN       TCGA-2G-AAFY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3       TCGA-2G-AAG5 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8       TCGA-2G-AAG9 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG       TCGA-2G-AAGI 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM       TCGA-2G-AAGN 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS       TCGA-2G-AAGT 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     65     40     38
D61V5, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               65
  CLUS_2              0               40
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CD MUTATED        3      0      0      0      0      0      1
  PIK3CD WILD-TYPE     39     26     12     24      8     23     11
D61V6, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               39
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     48     56     39
D61V7, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               56
  CLUS_3              1               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     65     38     40
D61V8, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               65
  CLUS_2              0               38
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     64     36     43
D61V9, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               64
  CLUS_2              0               36
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CD MUTATED        3      0      0      1
  PIK3CD WILD-TYPE     33     32     38     40
D61V10, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               33
  CLUS_2              0               32
  CLUS_3              0               38
  CLUS_4              1               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = EPAS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      0      3
  EPAS1 WILD-TYPE     45     42     55
D62V1, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              42
  CLUS_3             3              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      1      2
  EPAS1 WILD-TYPE     52     47     43
D62V2, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1              47
  CLUS_3             2              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPAS1 MUTATED        1      0      2      1
  EPAS1 WILD-TYPE     46     14     32     20
D62V3, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              14
  CLUS_3             2              32
  CLUS_4             1              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        1      1      2
  EPAS1 WILD-TYPE     48     23     41
D62V4, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             1              23
  CLUS_3             2              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      1      2
  EPAS1 WILD-TYPE     66     39     37
D62V5, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              39
  CLUS_3             2              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPAS1 MUTATED        2      0      0      1      0      1      1
  EPAS1 WILD-TYPE     40     26     12     23      8     22     11
D62V6, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              40
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      1      2
  EPAS1 WILD-TYPE     49     55     38
D62V7, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              55
  CLUS_3             2              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      1      2
  EPAS1 WILD-TYPE     66     37     39
D62V8, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              37
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      1      2
  EPAS1 WILD-TYPE     65     35     42
D62V9, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPAS1 MUTATED        2      0      1      2
  EPAS1 WILD-TYPE     34     32     37     39
D62V10, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              34
  CLUS_2             0              32
  CLUS_3             1              37
  CLUS_4             2              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DLC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      1      0
  DLC1 WILD-TYPE     45     41     58
D63V1, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             41
  CLUS_3            0             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        1      1      1
  DLC1 WILD-TYPE     53     47     44
D63V2, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1             47
  CLUS_3            1             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        2      0      0      1
  DLC1 WILD-TYPE     45     14     34     20
D63V3, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             14
  CLUS_3            0             34
  CLUS_4            1             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      0      1
  DLC1 WILD-TYPE     47     24     42
D63V4, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            0             24
  CLUS_3            1             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      1      0
  DLC1 WILD-TYPE     66     39     39
D63V5, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             39
  CLUS_3            0             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLC1 MUTATED        1      1      0      0      0      1      0
  DLC1 WILD-TYPE     41     25     12     24      8     22     12
D63V6, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      1      0
  DLC1 WILD-TYPE     49     55     40
D63V7, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             55
  CLUS_3            0             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      1      0
  DLC1 WILD-TYPE     66     37     41
D63V8, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             37
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      1      0
  DLC1 WILD-TYPE     65     35     44
D63V9, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        1      1      1      0
  DLC1 WILD-TYPE     35     31     37     41
D63V10, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             35
  CLUS_2            1             31
  CLUS_3            1             37
  CLUS_4            0             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
